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<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0M4</accession>
    <name>A0A392N0M4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023308">
        <property type="protein sequence ID" value="MCH92729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0M4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="83"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH92729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="393" mass="44643" checksum="F852058050090F6C" modified="2018-12-05" version="1" fragment="single">MCCFQLMQEDNSTLLIPSDMPPDLAQLLLQFRHIFDSPTSLPPQRAHDHSIPLMDESRVVKVRPYRYPHSQKAQIELMVDDMLQQGIIKPSTSPFSSPIILVKKKDGTWRFCTDYRALNALTIKDSFPLPTVDELLDELFGAKFFSKLDLRSGYHQILMNPRDRHKTAFRTHHGHYEWLVMPFGLSNAPASFQSLMNHVFQSVLRKFVLVFFDDILVYSPSWLTHLDHLKLVLQLLSDHQLFVKLSKCSFGMTEVEYLGHVVSGMGVTMDKHKVQAIVDWPIPSNVKQLRGFLGLTGYYRRFIKSYATIAAPLTELLKKDHFLWSPTATAAFNALKIAVTTAPVLVLPNFCQPFVLETDASNIGIGAVLSQLGHPIAYFSKKLGPNVQRQSAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2I0</accession>
    <name>A0A392N2I0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026100">
        <property type="protein sequence ID" value="MCH93931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="38"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="3">
        <location>
            <begin position="166"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="228"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="286" mass="32878" checksum="705AD6F6CAF57859" modified="2018-12-05" version="1">MASPNLEGLSIHEEEEEGFSFDFDEGGEEQISLQWCLXRSIHFKSMQVRMADLWKPVKGVIIKEAKPGLFLFSFNHPLDMEAVLNGGPWTFDNNTLLLDRVQIGMQVENIPLFHTEFWVQIHNLPTGLMKEAVGMKLANYIGAFVEYDKNNNSSFWRQYMRVRVKVDVRHPLKKDTKVKDKAGQWCTVNFKYEKLGVFCFVCGVMGHAENKCEIRYAMETDDGTRAWTGDIRADPRRQSGRQTSRWLREERGGREGRSDGATWGQRNNTVETPTXXAASYKAITEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA01</accession>
    <name>A0A392NA01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BHLH transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032487">
        <property type="protein sequence ID" value="MCH96502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46266:SF3">
        <property type="entry name" value="TRANSCRIPTION FACTOR EGL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46266">
        <property type="entry name" value="TRANSCRIPTION FACTOR TT8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="223"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="235" mass="26641" checksum="F74C7FECDEBD375D" modified="2018-12-05" version="1" fragment="single">MKGVIELGTTDMVMEDLSIIQQIKTSLSNILSVDDPINGQATLNSRNNEDVAFDHIDYNVELIPEVGNDIINTTISPNGSSNALQTNQLPDETFMVESWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNNNQKMTLVDPLSYDCHYQKILSELLTSNDQLTMGMHFQNFHQDSSFRVWNKRGPVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLIESQEENDYREGTRLEADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NER9</accession>
    <name>A0A392NER9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033994">
        <property type="protein sequence ID" value="MCH97064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NER9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16521" checksum="7D6AFD78CBCBD0A7" modified="2018-12-05" version="1" fragment="single">MHFMAEFHRNGKLLKGLNSTFIALIPKDGSPQRSVISESQTAFVKDRQILDGILIANEVMDEARKIKKELMLIKVDFEKAYDSFADDTLLLGTKSWANVRALRTVLVLFEMMSGLKVNFNKSMLVGVNIDDSWFRAAATALHCKVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGY2</accession>
    <name>A0A392NGY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pumilio 24-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039418">
        <property type="protein sequence ID" value="MCH99116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040059">
        <property type="entry name" value="PUM3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13389">
        <property type="entry name" value="PUMILIO HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13389:SF0">
        <property type="entry name" value="PUMILIO HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13583" checksum="F0C4F4CB2B6CC466" modified="2018-12-05" version="1" fragment="single">GFGGILHPTLDDKINSLHKAIASLAALPKSEDSQEEHVLENFFSSRTIRKLILDCPNFASILWEEALKGKSELWSHGHSCKVISAFLESSDSKVQKLAKKELQPLIDNGTLKKQKSREEATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJD3</accession>
    <name>A0A392NJD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040101">
        <property type="protein sequence ID" value="MCH99359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="193"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="23287" checksum="0D9CC7222BE15177" modified="2018-12-05" version="1" fragment="single">MEVTDNEVCKTLTNNQIKQWTRKGKLSSVKLTVKYAILNKIAAVNWVPTSHSSDVATGLGRFIYVVGTKTKVDFGSYIFEQTIQHARTLSVKMPIAFPTLLCGIILSQQPGILVSTDVACKRESALSLDYRLFEGTHVSDIATTSVKKPAGVLTRKQMIADLKDVSKALGEKKFKIDRVIQALVLEEEAIAVENEEGQPEGTATGDDVEEQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTG1</accession>
    <name>A0A392NTG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Importin-5</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051229">
        <property type="protein sequence ID" value="MCI03113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12113" checksum="01CB0DFE1082B4D7" modified="2018-12-05" version="1" fragment="single">MQETDRDLSAIVLRLLARCIQIFSSFFTDQLIKQIADELNDTIKKIIKFEIEKAQEEGTSEDLYEPLSLEEPTEEAVQLIATAIDTFGDQFMLHVDTLMSNVVVFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTM7</accession>
    <name>A0A392NTM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LON protease mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase S16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051434">
        <property type="protein sequence ID" value="MCI03197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005759">
        <property type="term" value="C:mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051131">
        <property type="term" value="P:chaperone-mediated protein complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007005">
        <property type="term" value="P:mitochondrion organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43718">
        <property type="entry name" value="LON PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43718:SF2">
        <property type="entry name" value="LON PROTEASE HOMOLOG, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Lon proteolytic" evidence="4">
        <location>
            <begin position="1"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI03197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="16879" checksum="8A53F0E5F20A0626" modified="2018-12-05" version="1" fragment="single">MGLAWTAMGGSTLYIETTLVEDGDGKGALHTTGQLGDVMKESAQIAHTVARAILLEKEPENPFFANTKLHLHVPAGATPKDGPSAGCTMTTSLLSLALKKPVKKDLAMTGEVKEKTIAARRSEVKTLIFPSANKRDFDELAPNVKEGLDVHFVDDYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTZ1</accession>
    <name>A0A392NTZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051790">
        <property type="protein sequence ID" value="MCI03311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="49"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="241" mass="27264" checksum="2EC7A7F4BDA1D763" modified="2018-12-05" version="1" fragment="single">MAPFSLEEVREVIWSCDGNKCPGPDGFNFNFLKACWEIIKGDIMAFLFEFYNTASLPKAFTASFLALIPKKDHPQVLSDYRPICLVSSMYKILAKVLATRLKKVLGKLISPVQSAFLPNRQILDGVLVVNELLDLAKRRKDKCLMFKVDFERAYDTVNWNFLEYMMTRMGFTVGWRQWIRACVFQSSMSVLVNGSPTEDFTVGKGLRQGDPLSPFLFLIVAEGLTGLMSKAVDGSLFHGYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NY50</accession>
    <name>A0A392NY50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056284">
        <property type="protein sequence ID" value="MCI04721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NY50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017242371" evidence="1">
        <location>
            <begin position="26"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13943" checksum="0C110F3A2A91B60E" modified="2018-12-05" version="1">MNHLMMNYWILNLISHSLLLPLCDHQKNPSILPSPTNSVIDFISFSSNHDLFNELLNDFHPPTPIPSENLNTDLEHTQKDLNKDLQLDDEIQLDLDALSDTISSFQNFVNNNSLVKRLYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3H9</accession>
    <name>A0A392P3H9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative phenylalanine-tRNA ligase alpha subunit</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060304">
        <property type="protein sequence ID" value="MCI05969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3H9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009328">
        <property type="term" value="C:phenylalanine-tRNA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF40">
        <property type="entry name" value="PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538">
        <property type="entry name" value="PHENYLALANYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phenylalanyl-tRNA synthetase" evidence="6">
        <location>
            <begin position="8"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI05969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11055" checksum="00E78FFFE577CFD2" modified="2018-12-05" version="1" fragment="single">MILHFDLGLVCDRKLSLKDLMKVLRDFFKHLGMTKLKFKPAFNPYTEPSMEIFGYHEGFKKYVEVGNSGMFRPEMLRPMGLPEDVQVIAWGLSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P955</accession>
    <name>A0A392P955_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068433">
        <property type="protein sequence ID" value="MCI08277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P955"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5272" checksum="0B41FDDB5739B636" modified="2018-12-05" version="1" fragment="single">AWVETGFEDHDDGSNRDTWTKSSSGAIGSENRLESTYLFIQMEQCAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJP0</accession>
    <name>A0A392PJP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078945">
        <property type="protein sequence ID" value="MCI11125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6720" checksum="3A511ED48ABC2F30" modified="2018-12-05" version="1">MCIRLDLLQSTVRAGVLWYISAGHQRPYELPDVEHAGNESCHPLTVSLDLLMDSGVSTHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK50</accession>
    <name>A0A392PK50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Apyrase 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GDA1/CD39 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084277">
        <property type="protein sequence ID" value="MCI12463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017110">
        <property type="term" value="F:nucleoside diphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009134">
        <property type="term" value="P:nucleoside diphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.150">
        <property type="entry name" value="Exopolyphosphatase. Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000407">
        <property type="entry name" value="GDA1_CD39_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11782">
        <property type="entry name" value="ADENOSINE/GUANOSINE DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11782:SF128">
        <property type="entry name" value="GDA1_CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01150">
        <property type="entry name" value="GDA1_CD39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="9"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600407-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI12463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="24659" checksum="434BFF949E703671" modified="2018-12-05" version="1" fragment="single">TYGALDLGGSSLQVTFEAGYGLNEAFDKSVAYVFKKNKLRLGGTVKHPCLQNGYKSQYTCSRCLAVEKEKEVESPKVVNGSVNAVGGGKGVLKTPVRLVGAPNWQECSAIAKVAVNLSEWSDVGQGLDCEVNPCALRENLPRPLGHFYVISGFFVVYRFFNLTSEATIDDVLEKGREFCEKKWDVAKKSVAPQPFIEQYCFRAPYVASLLREGLHITDRHITVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMA1</accession>
    <name>A0A392PMA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Polynucleotidyl transferase ribonuclease H fold</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086255">
        <property type="protein sequence ID" value="MCI12944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF59">
        <property type="entry name" value="CCHC-TYPE INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI12944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="25349" checksum="F56561A11A5C89F2" modified="2018-12-05" version="1" fragment="single">MGLGGVLIQSGKVVAYVSRQLKTHERNYPTHDLELAAVVFTLKIWRHYLYGSRFEVFSDHQSLKYLFNQKELNMRQRRWFEFLKDYDFKLSYHPGKANVVADALSRKSLHMSSLMAKELDLIEEFRDLSLVCEVTPRSVRLGMLKLTNPFLEEIKECQKRDQKLAEKLKLIREGKETDFGVDENGVVRYHGRVCVPGVPELKKMILEEGHRSGLSIHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMZ9</accession>
    <name>A0A392PMZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088368">
        <property type="protein sequence ID" value="MCI13471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4589" checksum="8EDD511F374A30D2" modified="2018-12-05" version="1" fragment="single">MELRSNGLTSSETGYGSRRTKRCVCLNRAKAGARQVRSFIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUA4</accession>
    <name>A0A392PUA4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glucose-induced degradation protein 8</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092687">
        <property type="protein sequence ID" value="MCI14505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006594">
        <property type="entry name" value="LisH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050618">
        <property type="entry name" value="Ubq-SigPath_Reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12864">
        <property type="entry name" value="RAN BINDING PROTEIN 9-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08513">
        <property type="entry name" value="LisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00667">
        <property type="entry name" value="LisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50896">
        <property type="entry name" value="LISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10132" checksum="8525A4810059ED52" modified="2018-12-05" version="1" fragment="single">AASKKVITREEWERKLNNVNIRKEDMNKLVMNFLVTEGFVEAAEKFRKESGTEPDIDLATITDRMAVKKAVQXGNVEDAIEKVNDLNPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXI6</accession>
    <name>A0A392PXI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">G1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the plant homeotic and developmental regulators ALOG protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099624">
        <property type="protein sequence ID" value="MCI16150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009299">
        <property type="term" value="P:mRNA transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009416">
        <property type="term" value="P:response to light stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040222">
        <property type="entry name" value="ALOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006936">
        <property type="entry name" value="ALOG_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31165">
        <property type="entry name" value="PROTEIN G1-LIKE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31165:SF95">
        <property type="entry name" value="PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04852">
        <property type="entry name" value="ALOG_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51697">
        <property type="entry name" value="ALOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="ALOG" evidence="9">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="89"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="103"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI16150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13326" checksum="A262F24705641AB5" modified="2018-12-05" version="1" fragment="single">GANVLEFLRYLDQFGKTKVHTQICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQAKARGISYEKKKRKRPPQXPPPPPPPSNATTSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZW7</accession>
    <name>A0A392PZW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">P-loop containing nucleoside triphosphate hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104656">
        <property type="protein sequence ID" value="MCI17267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056653">
        <property type="entry name" value="DUF7751"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051701">
        <property type="entry name" value="Mito_OM_Translocase_MSP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644">
        <property type="entry name" value="AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644:SF83">
        <property type="entry name" value="P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24933">
        <property type="entry name" value="DUF7751"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7751" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="31"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="65"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF24933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI17267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14043" checksum="0597FE36B6B681BB" modified="2018-12-05" version="1" fragment="single">ISYHLMNTKEPEYRNGKLVISANSLSQGLSLFQGGKSSGNLKTNDSNKENVVEDIAGAKNDVRSDNQAPENKNDTSIPVTKKEGENSTPAKVEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0G6</accession>
    <name>A0A392Q0G6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative pectate lyase 13-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the polysaccharide lyase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105589">
        <property type="protein sequence ID" value="MCI17467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030570">
        <property type="term" value="F:pectate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018082">
        <property type="entry name" value="AmbAllergen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045032">
        <property type="entry name" value="PEL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683:SF11">
        <property type="entry name" value="PECTATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683">
        <property type="entry name" value="PECTATE LYASE 18-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00807">
        <property type="entry name" value="AMBALLERGEN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI17467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9535" checksum="1E73239D1CDC114A" modified="2018-12-05" version="1" fragment="single">MGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQXXXXXXXXXTDMTINLRHELIFNSFKTVDGRGANVEITGHGCITLQYISNIIIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3Q7</accession>
    <name>A0A392Q3Q7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-ketoacyl-CoA synthase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a very-long-chain acyl-CoA + malonyl-CoA + H(+) = a very-long-chain 3-oxoacyl-CoA + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:32727"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:90725"/>
            <dbReference type="ChEBI" id="CHEBI:90736"/>
            <dbReference type="EC" id="2.3.1.199"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112945">
        <property type="protein sequence ID" value="MCI19033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3Q7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009922">
        <property type="term" value="F:fatty acid elongase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012392">
        <property type="entry name" value="3-ktacl-CoA_syn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013601">
        <property type="entry name" value="FAE1_typ3_polyketide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31561">
        <property type="entry name" value="3-KETOACYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08392">
        <property type="entry name" value="FAE1_CUT1_RppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017178360" evidence="3">
        <location>
            <begin position="16"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="FAE" evidence="4">
        <location>
            <begin position="14"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00047375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI19033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="20910" checksum="254DCF8E77231ABB" modified="2018-12-05" version="1" fragment="single">MGSIVLLFLFGLYYAKRSPPIYMVDFACYKPEKERKISVESFVEMLEDSGQFGDETLQFQRRILSRAGLGDETSLPNGIMSRPPNLSMKEARLEAEAVMFGALDALFAKTGVNPKDIDILVVNCSLFNPTPSLSAMIVNHYKLRTNIKSYNLGGMGCSAGLISIDLAKDLLKANPNSYAVVLSTENLTLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q417</accession>
    <name>A0A392Q417_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Importin subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the importin alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111176">
        <property type="protein sequence ID" value="MCI18642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q417"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23316">
        <property type="entry name" value="IMPORTIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI18642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4993" checksum="0091E61524837254" modified="2018-12-05" version="1" fragment="single">IQAVIDAGVCGRLVQLLLHPSPEVLIPALRTLGNIVIGDDMQTQVKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q424</accession>
    <name>A0A392Q424_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">23-bisphosphoglycerate-independent phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111225">
        <property type="protein sequence ID" value="MCI18652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q424"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004619">
        <property type="term" value="F:phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006007">
        <property type="term" value="P:glucose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005995">
        <property type="entry name" value="Pgm_bpd_ind"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31637">
        <property type="entry name" value="2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31637:SF7">
        <property type="entry name" value="2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metalloenzyme" evidence="4">
        <location>
            <begin position="14"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI18652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8009" checksum="04BA95379A163D17" modified="2018-12-05" version="1" fragment="single">DKAGKPLLKDGKVQILTSHTLEPVPIAIGGPGLASGVRFRNDVPTGGLANVAATVMNLHGFEAPSDYETTLIEVVDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5V4</accession>
    <name>A0A392Q5V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Auxilin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111140">
        <property type="protein sequence ID" value="MCI18635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="9"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="20782" checksum="5192F30AFDA5C3C7" modified="2018-12-05" version="1" fragment="single">MNDFDGLLASDFGLKPQGKSAPMAPPTKSSSNHPNSTSLNFDFGSRSVRTSDSLYGSSTVRHNRDAASFDDLFTTTTGSKPRGADSPFDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVFDGVPGLKSTGKVNFENVFASPKTESGAFDDLLVGFGKESKGSAKKGSEKDDKRGSDFDDLLPGFGSSRSPSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6S2</accession>
    <name>A0A392Q6S2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115589">
        <property type="protein sequence ID" value="MCI19602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6S2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7177" checksum="41A9A28569E69007" modified="2018-12-05" version="1" fragment="single">TEPSTVHKDLLNVTNKSINKMQLKDKVSSLQVALSDLLVTTGNAVIYHISNGFPANSSTHPVATSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q830</accession>
    <name>A0A392Q830_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADP-dependent malic enzyme</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114679">
        <property type="protein sequence ID" value="MCI19415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23406">
        <property type="entry name" value="MALIC ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23406:SF73">
        <property type="entry name" value="NAD-DEPENDENT MALIC ENZYME 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Malic enzyme NAD-binding" evidence="1">
        <location>
            <begin position="5"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9182" checksum="488BAC9B36A2A2A0" modified="2018-12-05" version="1" fragment="single">MRESVSTKPAIFAMSNPTMNAECTAIDAFNHAGESIVFASGSPFENVDLGNGXVGHVNQANNMYLFPGIGLGSLLSGARHITDGMLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCP4</accession>
    <name>A0A392QCP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cleavage and polyadenylation specificity factor subunit 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127535">
        <property type="protein sequence ID" value="MCI21924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058543">
        <property type="entry name" value="Beta-prop_RSE1/DDB1/CPSF1_2nd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23726">
        <property type="entry name" value="Beta-prop_RSE1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RSE1/DDB1/CPSF1 second beta-propeller" evidence="1">
        <location>
            <begin position="8"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="21780" checksum="D6E3AD2A7D258FB4" modified="2018-12-05" version="1" fragment="single">PASFDGSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVVCYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDALTKEVPKDSQKGDKVSDGVVSQGRKDALNMKVVELAMQRWSGKHSRPFLFGILSDGTILCYHAYLYENPDGTSKVEDSISAGGPIGLSNTSVSRLRNLRFVRVPLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QK60</accession>
    <name>A0A392QK60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pleiotropic drug resistance protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010140700">
        <property type="protein sequence ID" value="MCI24297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QK60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48040:SF35">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 39-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48040">
        <property type="entry name" value="PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7823" checksum="D086911040C64949" modified="2018-12-05" version="1" fragment="single">VGLELPTIEVRFKDINVEAQVYVGSRALPSLLNFFVNVIEGCLNNLQIIPSPKKQLHILQNVSGIIKPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKT5</accession>
    <name>A0A392QKT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010139877">
        <property type="protein sequence ID" value="MCI24156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47212">
        <property type="entry name" value="ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47212:SF15">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL N-ACETYGLUCOSAMINLYTRANSFERASE SUBUNIT P-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6216" checksum="D469CF96FB32C145" modified="2018-12-05" version="1" fragment="single">MWGFISMFDFRHGHFTRKLIADKSQSSKHSGGVVHSKNKFEVLNNIDEDCQGTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QN25</accession>
    <name>A0A392QN25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149407">
        <property type="protein sequence ID" value="MCI25791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="68"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18821" checksum="D9CAD1032F1D533F" modified="2018-12-05" version="1" fragment="single">VDSERTTTHVINLERSPKKRALTPIDSHATSSSDLKEVVPMGVQKVLVTLRSKFSWLQDVCQALREADDLLNGERAKFKEEIERLXXXXXXXXXXSTQLTTAKDSLQELSKKYDKLEQIHKETFEELRHLKESKEKSDKAFDDLASELASLSNRVKNLGGSRIGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRA7</accession>
    <name>A0A392QRA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151047">
        <property type="protein sequence ID" value="MCI26056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15592" checksum="A00219A0DABAC6B4" modified="2018-12-05" version="1" fragment="single">MEEPPLKHVRGKRGSSATASSWQEREMTRQQEGGQRAWRVQRQPEVDEKEQDDEQEEEQNGVVDENMMDAGGDEDEEVAVQVAKINAATFTYPEPEPTEFPGGPSDKGVLSFYAGHIARHIFDGQVREVLTVVSHGRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVX0</accession>
    <name>A0A392QVX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163209">
        <property type="protein sequence ID" value="MCI28042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF1">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13856" checksum="621EB33B46E0114D" modified="2018-12-05" version="1" fragment="single">DSLLAEEVIPNLVTDEVNALLTMVPSHDEIKTAVFALNKDSAPGPDGFGAFFFQTYWDIVKIDVINAMLEFFTTSWILPGFNSNIIALLPKTPEASSIDHYRPIAMANFKFKVISKIIADRLAPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYI5</accession>
    <name>A0A392QYI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division cycle and apoptosis regulator protein 1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010170297">
        <property type="protein sequence ID" value="MCI29097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025224">
        <property type="entry name" value="CCAR1/CCAR2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14304">
        <property type="entry name" value="CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14304:SF11">
        <property type="entry name" value="SAP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="9236" checksum="61B4CDA35AF1F07A" modified="2018-12-05" version="1" fragment="single">MERREKERERDRKRALEVKLERTPVRSSKDPRSTSKDPRGSSLTKEAKSSRRDSPHRGALHRHRSPVKEKRREYICK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R329</accession>
    <name>A0A392R329_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181243">
        <property type="protein sequence ID" value="MCI30657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R329"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7860" checksum="D568668A35C1DA98" modified="2018-12-05" version="1">MLTFDGTLFRHRVFKADTVAASKSSILMLLCRREYADLTEKKHATSSIWDLSAPVTAVHAWPRLLQELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R567</accession>
    <name>A0A392R567_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185707">
        <property type="protein sequence ID" value="MCI31244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R567"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="7"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7786" checksum="152A13D41E257AEA" modified="2018-12-05" version="1" fragment="single">AGNVGFSNILHAELLAVYHGLILAWVLDIKELWCHSDSKTVIKLLSESVNVWHHYAAIIHNIKDLLARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAE2</accession>
    <name>A0A392RAE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205771">
        <property type="protein sequence ID" value="MCI33608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="126"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="98"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI33608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16350" checksum="035E74F102C8F2F3" modified="2018-12-05" version="1" fragment="single">MDFKNKKVIEFMELKQGNMTVAEYAAKFESLCKFSPHYNTVEAENDKCVKFESGLHPDIKHNIRFAEIRSFNTLVTKSRICDDDARAKNNYYKAIKGKSQDRGKPYEGKGKESIGKSDEKKMNDGKCYKCGEIGHRFFECPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAP2</accession>
    <name>A0A392RAP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010197339">
        <property type="protein sequence ID" value="MCI32625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13277" checksum="02A688211F59DCE5" modified="2018-12-05" version="1">MMHLRYTLTILYEASPTGLCLQAGHPDHQYFAIYGQQTTLPMIKRSSTNLAWRSNIIIPYFIISIVSYTPKQRSHSTYSSVILMPTQGKHSIGCTTLLTSGGTQDREQSGRLPARSSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFC3</accession>
    <name>A0A392RFC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Adenosine 3'-phospho 5'-phosphosulfate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleotide-sugar transporter family. UDP-galactose:UMP antiporter (TC 2.A.7.11) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212312">
        <property type="protein sequence ID" value="MCI34285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046964">
        <property type="term" value="F:3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013657">
        <property type="entry name" value="SCL35B1-4/HUT1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10778:SF8">
        <property type="entry name" value="ADENOSINE 3'-PHOSPHO 5'-PHOSPHOSULFATE TRANSPORTER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10778">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35 MEMBER B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08449">
        <property type="entry name" value="UAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0050">Antiport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI34285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8125" checksum="21F171116F6CE253" modified="2018-12-05" version="1" fragment="single">MGAFIPGLRRKYPIHEYLSAVLLVVGLILFTLADAHTSPNFSVVGVVMITGALVMDSFLGNLQEAIFTMNPDTTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RHP8</accession>
    <name>A0A392RHP8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010220418">
        <property type="protein sequence ID" value="MCI35115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RHP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052232">
        <property type="entry name" value="RLK_Ser/Thr-Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984">
        <property type="entry name" value="OS01G0323000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984:SF4">
        <property type="entry name" value="OS01G0631700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI35115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9418" checksum="0D4F5A0A745F3334" modified="2018-12-05" version="1" fragment="single">YVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVSNNYKCSHFLLLSLSSIESDVTMVFHIADKILIIVMTGESC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJQ0</accession>
    <name>A0A392RJQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010229066">
        <property type="protein sequence ID" value="MCI35990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4418" checksum="789A152E72DB7033" modified="2018-12-05" version="1" fragment="single">TAGDEEDDVALPKSQLTGEVVLPLVPVLLLLDLDISNVTEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNK5</accession>
    <name>A0A392RNK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010241025">
        <property type="protein sequence ID" value="MCI37126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8998" checksum="558190A7098E87C9" modified="2018-12-05" version="1">MWEALRNDITKDLDRIQNGDLNELIEFQMKTREWVEEVNKEFEVVQLKKKGRLSIPDNFFNETTVTNQLWRENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPR9</accession>
    <name>A0A392RPR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010258144">
        <property type="protein sequence ID" value="MCI38658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6021" checksum="1B422B36F9A57E0B" modified="2018-12-05" version="1" fragment="single">DLYRIGVDCLEAGCELRPIYLDRKLEYSGIFMGRVDVFSGGLKVEECASKYEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPW8</accession>
    <name>A0A392RPW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ADP-ribosylation factor GTPase-activating protein AGD4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010258904">
        <property type="protein sequence ID" value="MCI38708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4011" checksum="6CE91617BFD11B4B" modified="2018-12-05" version="1" fragment="single">GAKPSIKDAAGHTALERAMEMGAITDEQLFIMLVEHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRT0</accession>
    <name>A0A392RRT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010254101">
        <property type="protein sequence ID" value="MCI38295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7880" checksum="224D8DDBB55C957E" modified="2018-12-05" version="1" fragment="single">ASVSCASRRQEWRGAPVIKDGKQDGIGLLRVARIHVARRTPSCVHHARCAGKVARRAAAKSIYRNAIFRSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RW14</accession>
    <name>A0A392RW14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278871">
        <property type="protein sequence ID" value="MCI40362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RW14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="7320" checksum="1629C13AE396A0B8" modified="2018-12-05" version="1" fragment="single">VKWVNIPREVKEVKNKKKTWTKGDHPREWDIYYAFYKEQQKSDGWNDGVTKDHPKETYPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3P8</accession>
    <name>A0A392S3P8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010318421">
        <property type="protein sequence ID" value="MCI43511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3P8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9770" checksum="4B3CB69B2CAE4502" modified="2018-12-05" version="1" fragment="single">SGMDLASEDPAILQLNKWDPSETQVGLSEFREAFISPTREILLLHSYQKEALLFPLVKGDCYDFSYKGLLGLTYSSLHTNINTCKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S409</accession>
    <name>A0A392S409_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010313125">
        <property type="protein sequence ID" value="MCI43117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S409"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4455" checksum="D40FE663A49A5213" modified="2018-12-05" version="1" fragment="single">IERTRLIQNRIDRSSRSNAGRYGGATGKRGLECSGNGSKCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4Z8</accession>
    <name>A0A392S4Z8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010321557">
        <property type="protein sequence ID" value="MCI43749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3609" checksum="E2026AABB005E7B4" modified="2018-12-05" version="1" fragment="single">SIRVSEWRLSKLYMGEDVGRHYVGMRPVRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S705</accession>
    <name>A0A392S705_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lipoxygenase</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332968">
        <property type="protein sequence ID" value="MCI44608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S705"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.375.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001246">
        <property type="entry name" value="LipOase_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00468">
        <property type="entry name" value="PLTLPOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoxygenase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="63"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI44608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8512" checksum="183C57900804C2CB" modified="2018-12-05" version="1" fragment="single">TPAPLVYYRQEELETLRGDGTGERKEWERIYDYDVYNDLGQPDKNAALARPTLGGSSTLPYPRRGRTGRKPTLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8C6</accession>
    <name>A0A392S8C6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010337363">
        <property type="protein sequence ID" value="MCI44939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9899" checksum="FD48AFBEDB227AD0" modified="2018-12-05" version="1" fragment="single">MTPTAKGWAKWLVRNFGSCSNETEIIMSRCHVIYAIMRGEPIQTGEMIARSIKRMISGPDSYIGHPFIITTLCRLRDVPAEEDIDAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAA6</accession>
    <name>A0A392SAA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010336775">
        <property type="protein sequence ID" value="MCI44900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6486" checksum="B201E3B901A3490C" modified="2018-12-05" version="1" fragment="single">FPITNRTMTDRGYCNCYTPDEYESYQQCPLDNYGQTSDARLEETMIKFMEMQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDS8</accession>
    <name>A0A392SDS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010367308">
        <property type="protein sequence ID" value="MCI47103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8127" checksum="47E2E4B24D33AFD8" modified="2018-12-05" version="1" fragment="single">NGIPTDEFPLERGLRQGNPLSPFLFLLAAEGLHVLMEAMVENHFFLGYSIGTQNPISVSHLQFADDTLLLGTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFT8</accession>
    <name>A0A392SFT8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010376682">
        <property type="protein sequence ID" value="MCI47761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="98" mass="11610" checksum="22266C00F515E6D4" modified="2018-12-05" version="1" fragment="single">MTNYWLYLAHGHLPEDEKEAKTLQRKASSYCLMYDKLYRRGISIPLLKCIDEDDVDYVLREIHEGINRQHLGGKSLARKALRAGYYWPTMQRDAREHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHF3</accession>
    <name>A0A392SHF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010385266">
        <property type="protein sequence ID" value="MCI48333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7943" checksum="B6B620B70BA94534" modified="2018-12-05" version="1" fragment="single">MSRGGDEKKVKEIADKFNVNIVAAEADDDKDRMLKDFIADLMKKFEDGEISHQVFIDKMKARLDKLNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T177</accession>
    <name>A0A392T177_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010473867">
        <property type="protein sequence ID" value="MCI54075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T177"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3477" checksum="78C57DB1ADB2FE3E" modified="2018-12-05" version="1" fragment="single">GSCAARRVVCFRVGSFLSAAPGAGCAAPHADPFGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7K1</accession>
    <name>A0A392T7K1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010522153">
        <property type="protein sequence ID" value="MCI57009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6086" checksum="86E8B8AFEAA3A148" modified="2018-12-05" version="1" fragment="single">MAARTNAQIAEALATMADIMARDHQPEREDETRLERFMKHKPPTFIGGYNPEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THK1</accession>
    <name>A0A392THK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010585400">
        <property type="protein sequence ID" value="MCI60639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3786" checksum="F11399D99F3E19B2" modified="2018-12-05" version="1" fragment="single">EQWQTDSGDQNGGEQTKAVIRTAVDRCWVGHKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI81</accession>
    <name>A0A392TI81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010576019">
        <property type="protein sequence ID" value="MCI60137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7358" checksum="2E7BF41E4E49BDC8" modified="2018-12-05" version="1">MTVVEVGDRCERGGENSGVRERANGDGDVMLAAVAVVNSGETAGGYGEQARERARTMKEMVNWENKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIU6</accession>
    <name>A0A392TIU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010579911">
        <property type="protein sequence ID" value="MCI60357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9259" checksum="6684EA9E4B3C83A4" modified="2018-12-05" version="1" fragment="single">TLLIRACSPSDHASELEWHSLLSFAQARNFRIPAVFLSLSIAEARKFQFFSFSCRCSEELSECPSLSSAFSRPASVLGKQVLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKR5</accession>
    <name>A0A392TKR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010605274">
        <property type="protein sequence ID" value="MCI61733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7453" checksum="D659A84C710A3BED" modified="2018-12-05" version="1" fragment="single">FSLLASISELEARQVRKFQGQSEHQRVPARSGEMPPLGETSIARRALNVFLVKFKSKGVAGRAFIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TU65</accession>
    <name>A0A392TU65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010661582">
        <property type="protein sequence ID" value="MCI64713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TU65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="1906" checksum="4DDD8383BC6AE798" modified="2018-12-05" version="1" fragment="single">ILPPARRAGADGALCRVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW61</accession>
    <name>A0A392TW61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010666334">
        <property type="protein sequence ID" value="MCI64934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4886" checksum="DA9C508847939965" modified="2018-12-05" version="1" fragment="single">NRESPLNIRAETLLDKGPPITGPNIAVPRLNTQLAMEGSSRGEGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TY13</accession>
    <name>A0A392TY13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010674906">
        <property type="protein sequence ID" value="MCI65387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TY13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4022" checksum="B03D8B630F286677" modified="2018-12-05" version="1" fragment="single">MVAHQNRFGKDSEKIKAWIKALSEVAEFKGHSIHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZ83</accession>
    <name>A0A392TZ83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010693836">
        <property type="protein sequence ID" value="MCI66349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZ83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8469" checksum="3E73AA2F6987D7CE" modified="2018-12-05" version="1" fragment="single">HRCAKRQFLLLLVDDEVVSPDDGTAADLVDPGPGEEVIAEHQHPPTDSEHFHLSTAALRGPPSPRTLRLEGRINELQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZQ9</accession>
    <name>A0A392TZQ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694207">
        <property type="protein sequence ID" value="MCI66368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="78" mass="9392" checksum="8F14FF5C5DA1BB07" modified="2018-12-05" version="1" fragment="single">ADFRKADIRFPKQLPVKPNMDRSKYCRYHRSHRHVTEDCVHLKDAIEILIQKGYARKYVKEGERETNEAQMAIDARYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0B3</accession>
    <name>A0A392U0B3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sodium-dependent phosphate transport protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010704481">
        <property type="protein sequence ID" value="MCI66883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0B3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017409364" evidence="1">
        <location>
            <begin position="21"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7599" checksum="0E606B279B147000" modified="2018-12-05" version="1" fragment="single">MAGFQLGCALLLTLAPIIMSQGGIFGPVVSGFLWVLVWLSVASSTPDRNPQISKYELEYILNKRQQSFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U192</accession>
    <name>A0A392U192_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acylamino-acid-releasing enzyme</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010709909">
        <property type="protein sequence ID" value="MCI67139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U192"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI67139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9478" checksum="0DD962892977D3C6" modified="2018-12-05" version="1" fragment="single">WNCFHCQRKGHFKRDCLELKDNDESAHVVEDEGYEHGEALVMSSWEPEESGTQNSDDARDSEELGDFGLVVSEELERSCMLQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U3J8</accession>
    <name>A0A392U3J8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010721412">
        <property type="protein sequence ID" value="MCI67668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U3J8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5259" checksum="EC7C4D9FC28267E9" modified="2018-12-05" version="1" fragment="single">VRLTPATMSVHLCPAHACDNVLSVFVWLTPATMFPLCPANACDNVSSLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5N7</accession>
    <name>A0A392U5N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010722492">
        <property type="protein sequence ID" value="MCI67726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8052" checksum="F00C1C78295CCF1A" modified="2018-12-05" version="1" fragment="single">MAQRALADAMKLMANAMAQEAVSRTADRVAQEARRGGEDELRLERFMNNKPPIFKGGYDPDGAQTWLEGIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U855</accession>
    <name>A0A392U855_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010739534">
        <property type="protein sequence ID" value="MCI68610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U855"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8851" checksum="072E8E74EC1A48F0" modified="2018-12-05" version="1" fragment="single">RDLKVTQLVDDEGRWKLEVLVACLPVSLLHKIAAIPPPEESAGADSAYCIEDIAGSFSISDVYHALCRFDDGNGVANWKHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U968</accession>
    <name>A0A392U968_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010765645">
        <property type="protein sequence ID" value="MCI69932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U968"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4965" checksum="607840C148DB2A95" modified="2018-12-05" version="1" fragment="single">IGVTAGTTPSDGVIAAQRRFDDPSHLLINRLDQKNENFRSIDLVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAA7</accession>
    <name>A0A392UAA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010776160">
        <property type="protein sequence ID" value="MCI70441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3533" checksum="DAB3BF85E9D9A8C3" modified="2018-12-05" version="1" fragment="single">MGAGRAYGLEAALGACLTTPGAMRAKFLGVLLLAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFC2</accession>
    <name>A0A392UFC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010795318">
        <property type="protein sequence ID" value="MCI71384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2945" checksum="A9A5D457A25D409F" modified="2018-12-05" version="1" fragment="single">KMINRGNVQDAKVLDKWKALPPKHGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJ17</accession>
    <name>A0A392UJ17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010803097">
        <property type="protein sequence ID" value="MCI71745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJ17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7835" checksum="3AA5FF2669662F0D" modified="2018-12-05" version="1" fragment="single">MANFEVRRVLVDPGSSVDIMYAHTFETIQLIERNLTPYVGSDLQGFNGSTNKPWGYVDLIVTVGANETAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMS2</accession>
    <name>A0A392UMS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010867056">
        <property type="protein sequence ID" value="MCI74752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2536" checksum="447989FA3A2EFAE3" modified="2018-12-05" version="1" fragment="single">MPPSVAPAAPVDPVLDQTSPFYVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ80</accession>
    <name>A0A392UQ80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010873308">
        <property type="protein sequence ID" value="MCI75008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2076" checksum="1E2BC63C1264F8B2" modified="2018-12-05" version="1" fragment="single">MAEANPPPPPHRRTLGDYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQA9</accession>
    <name>A0A392UQA9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010892103">
        <property type="protein sequence ID" value="MCI75839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5880" checksum="53590D80E8EF8619" modified="2018-12-05" version="1" fragment="single">MKNGSLHSHGGGIMARLQAIRLSASVVCRTAYGVKKNKNNNNNNNNNNNNNNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URL4</accession>
    <name>A0A392URL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010872100">
        <property type="protein sequence ID" value="MCI74970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7948" checksum="B4BE58D91034AC6D" modified="2018-12-05" version="1" fragment="single">MAARTNAQIAEALAAMAGIMARDHQPGREDEARLERFMKHKPPTFTGGYNPEGAVKWLEEVEIIFEAMRCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ88</accession>
    <name>A0A392UZ88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010992711">
        <property type="protein sequence ID" value="MCI80309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4109" checksum="8A0A82C69EA368DD" modified="2018-12-05" version="1" fragment="single">MQDSGTEYVAFDPEPERTLRKRLRAARLARAAMGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0L9</accession>
    <name>A0A392V0L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011003166">
        <property type="protein sequence ID" value="MCI80779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0L9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="5969" checksum="9461C1FC5068F6EE" modified="2018-12-05" version="1" fragment="single">LPLSSSFSIRPPPPPLTLTTHPPSLPLFCPDLPRRDVASPSSGAIDLGVATPPCFHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2C8</accession>
    <name>A0A392V2C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011013166">
        <property type="protein sequence ID" value="MCI81201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5803" checksum="075E94BA41B36F98" modified="2018-12-05" version="1" fragment="single">MLKLTNDFLEKVVEKQKTGARLSKFKTLIEQGKKVDVEIDKHGVMRCRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7K6</accession>
    <name>A0A392V7K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011043487">
        <property type="protein sequence ID" value="MCI82440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3594" checksum="25C4A65C5DA041E9" modified="2018-12-05" version="1" fragment="single">MLTEAQAVHRSLIEDGPFINSVIKGNDNLNLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V824</accession>
    <name>A0A392V824_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydrolipoyllysine-residue acetyltransferase component</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011056166">
        <property type="protein sequence ID" value="MCI82985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V824"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="27"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="6963" checksum="51C43133310CFC32" modified="2018-12-05" version="1" fragment="single">EGETAPVGAPIGLLAETPEDIAEAQAKAKSVKSASSSSSSSSSSSSSSSSSPTPPVADSPPPVTSQSSPPPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEN8</accession>
    <name>A0A392VEN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011151237">
        <property type="protein sequence ID" value="MCI86848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6133" checksum="40974B863C2F7724" modified="2018-12-05" version="1" fragment="single">RLATGSDDKSGRNVPTGDGWQRLATSSPPPRQATSGDLKNGARRHLATSTQNRAFVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VH71</accession>
    <name>A0A392VH71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011137072">
        <property type="protein sequence ID" value="MCI86311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VH71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5612" checksum="66C3CAAD91D34CEF" modified="2018-12-05" version="1" fragment="single">WRALATTGDQLAQRPVPLAQRAFKINALAKRANHRSATYTRIQAQARNLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHG1</accession>
    <name>A0A392VHG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011151352">
        <property type="protein sequence ID" value="MCI86852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7208" checksum="F0F930C54DB1CC94" modified="2018-12-05" version="1" fragment="single">MNTKQVKESVKEHVELFAVFASLKLESGVKMEEPPVVCEFPDVFPGDVADVPPEREMEFTIDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJK1</accession>
    <name>A0A392VJK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011183295">
        <property type="protein sequence ID" value="MCI88087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3372" checksum="2E880490A7A668AA" modified="2018-12-05" version="1" fragment="single">MLRLSKIRKEDDDQSSSTAGSEDEEVEDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJM9</accession>
    <name>A0A392VJM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011172393">
        <property type="protein sequence ID" value="MCI87673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4900" checksum="69BF4A09BE34B1CE" modified="2018-12-05" version="1" fragment="single">SKPGYSALRASATGYSSLRAFATGYSALRAFANGYSALRALISKVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMJ8</accession>
    <name>A0A392VMJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011180176">
        <property type="protein sequence ID" value="MCI87965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7438" checksum="1176B710348015FD" modified="2018-12-05" version="1" fragment="single">KRTGPVENDREPHPTVCPSHHWSLPDAEGGVPHNPDSKHPKHGSDAPTVLWSVSENAPSNLVSGGTADSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNW0</accession>
    <name>A0A392VNW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011192308">
        <property type="protein sequence ID" value="MCI88415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5130" checksum="E207FE664562E61B" modified="2018-12-05" version="1" fragment="single">EGEDDGVLEPVKGLDYKYFHYRFSSGPVNNRGGNAGQGENEDEGNDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VT31</accession>
    <name>A0A392VT31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011275449">
        <property type="protein sequence ID" value="MCI91558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VT31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="16" mass="2017" checksum="09C7F32092F665A9" modified="2018-12-05" version="1" fragment="single">MQCFLWRKWCDGSDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTG7</accession>
    <name>A0A392VTG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011253156">
        <property type="protein sequence ID" value="MCI90749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3539" checksum="1BC8945BEA36CF92" modified="2018-12-05" version="1" fragment="single">MMNRAIGERRREAENVASGDGDGGEGFGWERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW85</accession>
    <name>A0A392VW85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011258664">
        <property type="protein sequence ID" value="MCI90945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7818" checksum="163C0C1DCEEDB6EF" modified="2018-12-05" version="1" fragment="single">KVKIEGESAKKKKGSKKRKSEDVKIVESITKQRHDKKPKSDDSDTESDDGSLAKKLKQRSSEDKAKEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWP7</accession>
    <name>A0A392VWP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011262861">
        <property type="protein sequence ID" value="MCI91105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7360" checksum="49B6393671AA9C59" modified="2018-12-05" version="1" fragment="single">TAETPCFDCEVSSPSPSIVTDHPPAYSPVASPTYTASHTAGIAPDLSRCVAEVSHGFKLRQDEERSNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2G3</accession>
    <name>A0A392W2G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011368405">
        <property type="protein sequence ID" value="MCI94854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5138" checksum="82B4AD5D0D4DD7A2" modified="2018-12-05" version="1" fragment="single">MLTVDEVAELHGITSDIHSLSRVHSSICWQQSRMLWLREGDANSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2J7</accession>
    <name>A0A392W2J7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011343943">
        <property type="protein sequence ID" value="MCI93979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2J7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008390">
        <property type="entry name" value="AWPM-19"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05512">
        <property type="entry name" value="AWPM-19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3191" checksum="C71BB79BAAB3F0A1" modified="2018-12-05" version="1" fragment="single">KTMEAFLIILSATQLFYIAAIHGAAAIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5V7</accession>
    <name>A0A392W5V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011345782">
        <property type="protein sequence ID" value="MCI94050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="5039" checksum="1B64AFBA6A6FD8C0" modified="2018-12-05" version="1" fragment="single">MEINYSDFDLVIEQAVDFEALNANGFDVEHFFTDQGWSQFFDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6K1</accession>
    <name>A0A392W6K1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011385423">
        <property type="protein sequence ID" value="MCI95389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI95389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5556" checksum="421D22A602680377" modified="2018-12-05" version="1" fragment="single">MGLGGVLMQRGKVVAYASRQLKTHERNYPTHDLELAAVVFTLKIWRHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7C1</accession>
    <name>A0A392W7C1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011393768">
        <property type="protein sequence ID" value="MCI95673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7C1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4975" checksum="21FFF01E3A910326" modified="2018-12-05" version="1" fragment="single">FFVVQVEVGLFLVVVVHVLVGFVVLVEIQIVVVVVVVVVEVQRMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WCJ4</accession>
    <name>A0A392WCJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011445891">
        <property type="protein sequence ID" value="MCI97509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WCJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5372" checksum="B12E87AA8F0FEB73" modified="2018-12-05" version="1" fragment="single">MERAARWWMTIDLKAKWRFVEYALKSRSQEVRNCNGKLMQAALGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYH0</accession>
    <name>A0A392MYH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022962">
        <property type="protein sequence ID" value="MCH92570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017477396" evidence="1">
        <location>
            <begin position="29"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="63"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17491" checksum="4A2374297E56888A" modified="2018-12-05" version="1" fragment="single">MILGCGGTYVRLCMIYGLLLQGCSLSNCSRGAATSIAPPDSSSNKGHPKAVPSLKDLVRVYKPEIILLINLQIHDSMRGDWRLTSFWGYSDSARRRQSWNLLRDLASTSTDPWCIIGDFNDLLSSDDKRGGPERPSWLYNGFRNAVSDCSFLDMPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2Y6</accession>
    <name>A0A392N2Y6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026701">
        <property type="protein sequence ID" value="MCH94180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2Y6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10742" checksum="78D7B35C9D7F0BB1" modified="2018-12-05" version="1" fragment="single">VKEKYEWRSFDDDDDDDDDENGGGGGGDDDDDDDDEEEDDDDDDDDDDDPDDDDDDENGDGGDDDDDDDENGDGGDDDDDDDGDDDENGDDEFYDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3Y6</accession>
    <name>A0A392N3Y6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026975">
        <property type="protein sequence ID" value="MCH94292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3Y6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="63"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="83"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="20429" checksum="C715DEEDD2C0DCA5" modified="2018-12-05" version="1">MRGNRMNRPGNFSAGGPSRPSHQNQNRGRQGTEPYNRPQNHRGPNHSGNQGIRGNQVKKKQTCFKCGEEGHYVIDCGAQDTLCYNCKKPGHFARDCRAPKAAPSANANQGGRPAARGRVYYIGTGASGQASNAIRGDHQIAGLSRNYSVFALFSGNLEFKCVARQGSADLMSLDDEYANGGADNEANWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGQ5</accession>
    <name>A0A392NGQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arabinogalactan peptide 23-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037902">
        <property type="protein sequence ID" value="MCH98543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044702">
        <property type="entry name" value="AGP23/40"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34672:SF2">
        <property type="entry name" value="ARABINOGALACTAN PROTEIN 23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34672">
        <property type="entry name" value="POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017261207" evidence="2">
        <location>
            <begin position="23"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="5829" checksum="BA2E6368B2311B00" modified="2018-12-05" version="1">MDMRKVTCAVLIAAASMSAVMASTEVPAPAPGPSSGASAAIPIVGSLVGASLVSFIALFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIM9</accession>
    <name>A0A392NIM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041169">
        <property type="protein sequence ID" value="MCH99737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11607" checksum="E6C4EFFA604AB646" modified="2018-12-05" version="1">MPKGYMKVCALKMENRVLHWIIAHVLRPKFGSFARVGNLEVDLMYLLKNGTKVDWHHFIIDRMFEIKNGGKTPALSFCSMIGAILDNFGIVANDVVVTPRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLC2</accession>
    <name>A0A392NLC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043817">
        <property type="protein sequence ID" value="MCI00631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11829" checksum="651B40829DE8F30C" modified="2018-12-05" version="1" fragment="single">GIWRIAPFIQQQQELCLEVARRTEVYGVLRQQKSDATYVIWNLRVAQDRLVWRGAQMGKFKTMCVTATCASRRTDGAAREHGNLRKSRHFNMEQGSIRGSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLY1</accession>
    <name>A0A392NLY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042235">
        <property type="protein sequence ID" value="MCI00106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12690" checksum="7882333E6FD20846" modified="2018-12-05" version="1" fragment="single">PHGAPEVVAEPQHADPVPVAEPHPDPAPAAEEDDGEQLDEEPTEFPGGPKDTTVLALYGGHFARYEYESYHRLALTPVSHGRKLRQFDIEVLDEQWFRERLTMTGLADLAKTGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0X3</accession>
    <name>A0A392P0X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057715">
        <property type="protein sequence ID" value="MCI05160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P0X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5560" checksum="0783A24F2219FDB3" modified="2018-12-05" version="1">MNQVRSKKSDFGFEHQNLREAQAIRPDSKGSESKVKFLKSIKSEGHVSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P174</accession>
    <name>A0A392P174_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cryptochrome-1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059649">
        <property type="protein sequence ID" value="MCI05758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003904">
        <property type="term" value="F:deoxyribodipyrimidine photo-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032922">
        <property type="term" value="P:circadian regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043153">
        <property type="term" value="P:entrainment of circadian clock by photoperiod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036155">
        <property type="entry name" value="Crypto/Photolyase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002081">
        <property type="entry name" value="Cryptochrome/DNA_photolyase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006050">
        <property type="entry name" value="DNA_photolyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455">
        <property type="entry name" value="CRYPTOCHROME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11455:SF60">
        <property type="entry name" value="CRYPTOCHROME 2B APOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00875">
        <property type="entry name" value="DNA_photolyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52425">
        <property type="entry name" value="Cryptochrome/photolyase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51645">
        <property type="entry name" value="PHR_CRY_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Photolyase/cryptochrome alpha/beta" evidence="1">
        <location>
            <begin position="4"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9764" checksum="9C0D75C98FFBD2C2" modified="2018-12-05" version="1" fragment="single">MGMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGXXXXXXXXXXXXKQSLVHLDQSLKSLGAGLVLIKTDSTVKALLEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3T6</accession>
    <name>A0A392P3T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062547">
        <property type="protein sequence ID" value="MCI06647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717:SF3">
        <property type="entry name" value="OS04G0544400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717">
        <property type="entry name" value="OS12G0527900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20626" checksum="D78FFFBDD20141EE" modified="2018-12-05" version="1">MDDIEGAEKLYDEWVSVRPADDSRVSNLIIGWYLKNGELDKAXXXXXXXXXXXXXXXXXXXXXXXXXXIAEKRISDALSCLKKAFVVTSDSTNWKPKPVKLAAFLKLCRDEDDMESAEVLIELLRQSGYHKDEVYASLIGNDELSSTIERIDDIVDSENMDDDXXXXXXXXSQVVFNQVDSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4L7</accession>
    <name>A0A392P4L7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein related</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061196">
        <property type="protein sequence ID" value="MCI06236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4L7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11383" checksum="4A4C50DEC86D74B7" modified="2018-12-05" version="1">MCRTSSSTSANKPTLKEGLKVMRKQVSQKESNAKSVKDEDDSEEDVESESAKHVNALTGICLSDAESCDEELSYEELAATYKDLFSRSTEVCKALEKRKKVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6I5</accession>
    <name>A0A392P6I5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger CCCH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065145">
        <property type="protein sequence ID" value="MCI07364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14735" checksum="131933EF4EA7C614" modified="2018-12-05" version="1" fragment="single">MPALLKESNSDCQTLNPANCDLPQPSNIISAADVECRNLSANMAANQTVKEWQSVTVXVPVKATINDVIVLSDSDEEDVNIEVTSAGRKGVESPDTNIWHCSGIYGSGTRRPVSLSALKRWSESEFDSASSHLEFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P766</accession>
    <name>A0A392P766_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Branched-chain-amino-acid aminotransferase-like protein 2</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067218">
        <property type="protein sequence ID" value="MCI07941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P766"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="entry name" value="D-amino Acid Aminotransferase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050571">
        <property type="entry name" value="Class-IV_PLP-Dep_Aminotrnsfr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42743">
        <property type="entry name" value="AMINO-ACID AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42743:SF11">
        <property type="entry name" value="AMINODEOXYCHORISMATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="D-aminoacid aminotransferase-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7491" checksum="50712B6CD68834E8" modified="2018-12-05" version="1" fragment="single">NLDSKIHHNNLLNIILAKIEANNGNADDAIMLGHDGCVAETNATNIGKMDSRDKSIKLKSQCTDSNELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9T6</accession>
    <name>A0A392P9T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068136">
        <property type="protein sequence ID" value="MCI08200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5528" checksum="F0CD229B0BB1C7AC" modified="2018-12-05" version="1">MPSSTLKGGRALKVVEDEHVILADTNCYIDRQRVAMELVIYATPASGDPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEQ9</accession>
    <name>A0A392PEQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074560">
        <property type="protein sequence ID" value="MCI09969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="12353" checksum="CCE9ABA8ADD10809" modified="2018-12-05" version="1" fragment="single">MKTILEYQHNIHIAPVYYNHGKPNLFRIYVDVIMSDLKHQLNSLLHYREQRRVTAIKYRRPSVYSKGIVVFTNMKLQNDVDVKTIFSIFYKNITKGPIELDAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJK7</accession>
    <name>A0A392PJK7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">methenyltetrahydrofolate cyclohydrolase</fullName>
            <ecNumber evidence="2">3.5.4.9</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.9" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010080336">
        <property type="protein sequence ID" value="MCI11486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10860:FF:000005">
        <property type="entry name" value="C-1-tetrahydrofolate synthase, cytoplasmic, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10860">
        <property type="entry name" value="Leucine Dehydrogenase, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminoacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48099">
        <property type="entry name" value="C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48099:SF13">
        <property type="entry name" value="METHYLENETETRAHYDROFOLATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="Aminoacid dehydrogenase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tetrahydrofolate dehydrogenase/cyclohydrolase catalytic" evidence="7">
        <location>
            <begin position="11"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI11486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12297" checksum="1598D18409FCEE5B" modified="2018-12-05" version="1" fragment="single">TDDNGHSAAILEGKAIAKQIKLKVADEISRMKGEIGKFPKLAVVLVGDRRDSHTFIHIKLKACEKVGIETVVSELPENCTENELLDVVSSFNDDKDVHGIVVQLPLPQVRNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLA5</accession>
    <name>A0A392PLA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nudix hydrolase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084769">
        <property type="protein sequence ID" value="MCI12584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047631">
        <property type="term" value="F:ADP-ribose diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003293">
        <property type="entry name" value="Nudix_hydrolase6-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040618">
        <property type="entry name" value="Pre-Nudix"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994:SF30">
        <property type="entry name" value="NUDIX HYDROLASE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994">
        <property type="entry name" value="NUDIX HYDROLASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18290">
        <property type="entry name" value="Nudix_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pre-nudix hydrolase" evidence="3">
        <location>
            <begin position="26"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI12584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="8906" checksum="773DD7F4AD344A3A" modified="2018-12-05" version="1" fragment="single">MSVAASPALPLGGHLCENGFECVEILPATNDAHGGVIVDLKDPMDPEIFATLLKSSLLQWKKQGKDGVWIKLPIELVNLVEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNG7</accession>
    <name>A0A392PNG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087725">
        <property type="protein sequence ID" value="MCI13302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7164" checksum="DC85C9F0D8265FB7" modified="2018-12-05" version="1">MIADLEEVSQILGDRKIKVDRVIQALKLEDDTVAVEHEEAQPNDNVVDDLGVDVQGEDYDASPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUF4</accession>
    <name>A0A392PUF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095174">
        <property type="protein sequence ID" value="MCI15139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3116" checksum="3ACB6A31E8519710" modified="2018-12-05" version="1" fragment="single">ASAFAKVLDEAGVILLFRDKVYLHPDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUU2</accession>
    <name>A0A392PUU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative reverse transcriptase (RNA-dependent DNA polymerase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098332">
        <property type="protein sequence ID" value="MCI15861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19803" checksum="857585B57DFF5565" modified="2018-12-05" version="1" fragment="single">MHVKFDDKEPDQVSELVEGISRSQVSDDEASEPPRFSEHINFSVPQEVQNQGISENPTAEATSEPVEEVVPPRNTFKYKSSHPEELILGNKDSPRKTRSDFRNEESLFGLISMVEPAKVEEALKDDAWIVAMQEELNQFQRNDVWSLVPRPSHKNIIGTKWVFRNKLNEEGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWV4</accession>
    <name>A0A392PWV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101497">
        <property type="protein sequence ID" value="MCI16578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5161" checksum="BB98106D75D9E670" modified="2018-12-05" version="1" fragment="single">MRGCFFCSVPHPWPSVHDYQPSGRHGTPAFDPWEVVEREFSCSHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PY22</accession>
    <name>A0A392PY22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099876">
        <property type="protein sequence ID" value="MCI16206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PY22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045358">
        <property type="entry name" value="Ty3_capsid"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19259">
        <property type="entry name" value="Ty3_capsid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ty3 transposon capsid-like protein" evidence="1">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14984" checksum="14842CDBB1BC3AC1" modified="2018-12-05" version="1" fragment="single">MEGPTIHWFNLWKDSTEELTWNNFKEALIVRFGEGRLENPFEELKDLKQTTCVEDYIAEFELYSSQCGRLPEQQFLGYFVGGLRHDIRSRVRTFKPRNRYHAMQLARDVEQEFTVLQESGQSSGSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9S7</accession>
    <name>A0A392Q9S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117663">
        <property type="protein sequence ID" value="MCI20005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12248" checksum="CF0F74A1237F89F0" modified="2018-12-05" version="1" fragment="single">MEKGEAKTAEAEVIPMSQMKEGEDAVEEVRVGEEKEGKTEYLEKGRNVNIEKEAVTKESVFVRKYKPMPEDVNWAQSGVVAIVRNGEAIPVVQNRIADAGFKELAIIPMGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QEE3</accession>
    <name>A0A392QEE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010126030">
        <property type="protein sequence ID" value="MCI21645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QEE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7465" checksum="9DF8276419497360" modified="2018-12-05" version="1" fragment="single">MIRNSKYEIMLFNLTEFQFNAFIVDTVFNSSSPLNRPTRKETLVRTCTIFASLVKLDLECCLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QK09</accession>
    <name>A0A392QK09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010137037">
        <property type="protein sequence ID" value="MCI23625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QK09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7325" checksum="471364ECBAFFFAEA" modified="2018-12-05" version="1">MNIPQGLIHKWNLKKELNRARTVIGVNESDNRSIDCNRDGGRREWWEWEGGFREVEGLKSGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMT0</accession>
    <name>A0A392QMT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-xylosidase/alpha-L-arabinofuranosidase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010143810">
        <property type="protein sequence ID" value="MCI24836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009044">
        <property type="term" value="F:xylan 1,4-beta-xylosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031222">
        <property type="term" value="P:arabinan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="entry name" value="Glycoside hydrolase, family 3, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044993">
        <property type="entry name" value="BXL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721:SF23">
        <property type="entry name" value="BETA-XYLOSIDASE_ALPHA-L-ARABINOFURANOSIDASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721">
        <property type="entry name" value="SUGAR HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017434830" evidence="2">
        <location>
            <begin position="34"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI24836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14628" checksum="C15179CD79C11E2B" modified="2018-12-05" version="1" fragment="single">MASTENRAPNVSVFLCFLILFATILLSCGRVSSQTSPVFACDVAKNPALANYXFCKKSLGVNARVKDLVSRLTLQEKIGNLVNSAVDVSRLGIPRYEWWSEALHGVSNVGPGTHFSNVVPGSTSFPMPILIAASFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPC7</accession>
    <name>A0A392QPC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149539">
        <property type="protein sequence ID" value="MCI25809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5491" checksum="03B9DB082670BC46" modified="2018-12-05" version="1" fragment="single">AYPAATTAAYLTPTSTTAAYPTVDGSPVTVKAFQVGGGGVVERKWVEDDSESGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QXL6</accession>
    <name>A0A392QXL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pre-mRNA-splicing factor SLU7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010169816">
        <property type="protein sequence ID" value="MCI29038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QXL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6407" checksum="7ED731E1CD3EA1A8" modified="2018-12-05" version="1" fragment="single">MVLLLFCSQRLRHNWPTVNKSHTPTAAEEENFATWGTDVPDDLVLDQKKLAEALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYV5</accession>
    <name>A0A392QYV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin-conjugating enzyme</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172940">
        <property type="protein sequence ID" value="MCI29488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5442" checksum="4077AFC606C82882" modified="2018-12-05" version="1" fragment="single">AIVPDVIDIDNDEDSADLVLVGEKVVKMNKGKTIESVHNGYGDHQTMVCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2X8</accession>
    <name>A0A392R2X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010183118">
        <property type="protein sequence ID" value="MCI30913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14535" checksum="BE3C9884A7EFB68F" modified="2018-12-05" version="1" fragment="single">RTGAPQVVAPRHKSNDFRFEHVCRRKCSSLHFARRDYSFARNIATRKCLFARLRSRNPLVAKTLSYEDMLVTSFSCGSFGFAEKATFSPQSSVTHPRGGNHVIDNDETLDRRLFSSMGFEGTDASSGPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R796</accession>
    <name>A0A392R796_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192855">
        <property type="protein sequence ID" value="MCI32117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R796"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="3"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12092" checksum="CD16F05FEB58DDC7" modified="2018-12-05" version="1" fragment="single">QMQKEHAVEVEKLKKEAANLTRERDDAITVSSGLAEEKTTLEKEVEGLQVAVDASLDEGFSFALDRVRVLFPELDEHRLSEADAMKEIEDVKLVDATPPSAVDATISPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAG8</accession>
    <name>A0A392RAG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Calcineurin-like metallo-phosphoesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205491">
        <property type="protein sequence ID" value="MCI33571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027629">
        <property type="entry name" value="DevT-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35769">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35769:SF2">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6562" checksum="E6B8C3FD1834ED4B" modified="2018-12-05" version="1" fragment="single">YGIKDMDGSAKRIQKAALGTPEDHFLILLAHNGPTGLGSDLNDICGKDWELDGGGDHGDPGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF93</accession>
    <name>A0A392RF93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CNGC5-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217206">
        <property type="protein sequence ID" value="MCI34802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6760" checksum="AD394D7FA1713CDB" modified="2018-12-05" version="1" fragment="single">STVAESTHLMKILKTYEEASGQEINLTKSEVFFSKNLSIAAQEDLSKIMGVRHVLGTEFGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RHJ0</accession>
    <name>A0A392RHJ0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010221951">
        <property type="protein sequence ID" value="MCI35286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RHJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9760" checksum="23093CF5EE956676" modified="2018-12-05" version="1" fragment="single">MAVADMEKTAFMTESGNYYYNVMPFGLKNAGATYQRMMNKVFRGEIGDMLKVYMDDMIVKSHEEIDHTTHLQKVFEQDRKHNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQX7</accession>
    <name>A0A392RQX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein vip1</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010262720">
        <property type="protein sequence ID" value="MCI39023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32343:SF37">
        <property type="entry name" value="BINDING PARTNER OF ACD11 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32343">
        <property type="entry name" value="SERINE/ARGININE-RICH SPLICING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="2"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI39023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6747" checksum="A9200A0B4A376BA0" modified="2018-12-05" version="1" fragment="single">IKTVKVSNVSLGATERDIQEFFSFSGDIHYVELRSYDERSQIAYVTFKDSQGAETAVLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSV1</accession>
    <name>A0A392RSV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GATA transcription factor 24-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010265702">
        <property type="protein sequence ID" value="MCI39292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045280">
        <property type="entry name" value="TIFY-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010399">
        <property type="entry name" value="Tify_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46125:SF7">
        <property type="entry name" value="GATA TRANSCRIPTION FACTOR 19-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46125">
        <property type="entry name" value="GATA TRANSCRIPTION FACTOR 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06200">
        <property type="entry name" value="tify"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51320">
        <property type="entry name" value="TIFY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tify" evidence="2">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI39292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9173" checksum="740F23F2F3345EC8" modified="2018-12-05" version="1" fragment="single">MAEQPLPIENPAIPVVDEDDDGDEDYTGGDETMDELEEETPNVNSVNVSAGANHADVVLPPTRTGELTLSFEGQVYVFPDVTPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXJ1</accession>
    <name>A0A392RXJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Abscisic acid 8'-hydroxylase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010285025">
        <property type="protein sequence ID" value="MCI40882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016132">
        <property type="term" value="P:brassinosteroid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010268">
        <property type="term" value="P:brassinosteroid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016125">
        <property type="term" value="P:sterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24286:SF28">
        <property type="entry name" value="ABSCISIC ACID 8'-HYDROXYLASE 3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24286">
        <property type="entry name" value="CYTOCHROME P450 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI40882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9543" checksum="6B5607F71AEC9D45" modified="2018-12-05" version="1" fragment="single">MLDSVISRRRNGQDFQQDFLESLIMKHSRKSDAQEDENKLTDKQLKDNVLTLLVAGHDTTTAALTWLIKFLEENQNVLEQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXL4</accession>
    <name>A0A392RXL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278296">
        <property type="protein sequence ID" value="MCI40316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF271">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7830" checksum="B9B2DC4ADB81ACFF" modified="2018-12-05" version="1" fragment="single">MDKLRLLQLSSEQLKGDYKYLSRQLRWLSWRGFPLKFIPAGFHQDNLVAIDLKYSNLEQVWMESQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5I6</accession>
    <name>A0A392S5I6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010327465">
        <property type="protein sequence ID" value="MCI44203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5I6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11176" checksum="953C45BF2AE82B4C" modified="2018-12-05" version="1" fragment="single">YRITLPPSLANLHDVFHVSQFRKYVADPSHVIESDDVQVRDDLTIESVPLRIEGREVKRLRNKEIASVKVVWEGPAGENAIWELEDKMKSSYPILFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S678</accession>
    <name>A0A392S678_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010318165">
        <property type="protein sequence ID" value="MCI43490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S678"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI43490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7174" checksum="BEC4F67A2FB2DEA1" modified="2018-12-05" version="1" fragment="single">MPLTQLTRKNQPFVWDKNCEESFQELKKRLTSATVLVLPNANEPFEVYCDASKMGLGGVLMQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9Q5</accession>
    <name>A0A392S9Q5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010346458">
        <property type="protein sequence ID" value="MCI45621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9Q5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11214" checksum="BAA3670F6A1C2697" modified="2018-12-05" version="1" fragment="single">MGDISSLASVFTEELQRRSLGHELKGLMLTYMMSSRQEQEVMEAKNKMKEVDDNLAGIEKEYAATKDKLGKEIENLRSSRDGKIAKLKREYEDKIKTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9S9</accession>
    <name>A0A392S9S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010337463">
        <property type="protein sequence ID" value="MCI44944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9174" checksum="29F54955A8512552" modified="2018-12-05" version="1">MLKLTNPFLEEIKEYQKRDHKLMEKLVLINEGKETDFGVDGNGVMRASKWIEYSSRGNQDVPRPEEVILVAWYEEANF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SE36</accession>
    <name>A0A392SE36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polyamine oxidase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the flavin monoamine oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010354119">
        <property type="protein sequence ID" value="MCI46210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SE36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046592">
        <property type="term" value="F:polyamine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006598">
        <property type="term" value="P:polyamine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050281">
        <property type="entry name" value="Flavin_monoamine_oxidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10742">
        <property type="entry name" value="FLAVIN MONOAMINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10742:SF386">
        <property type="entry name" value="LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amine oxidase" evidence="3">
        <location>
            <begin position="3"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI46210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6043" checksum="C66DF24C10825722" modified="2018-12-05" version="1" fragment="single">MVRGYLPVIHTLAKGLDIRLGHRVTKIVRRYNGVKVTTENGKTFVADAAIIAVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHC7</accession>
    <name>A0A392SHC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010384363">
        <property type="protein sequence ID" value="MCI48281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050907">
        <property type="entry name" value="SRSF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23147">
        <property type="entry name" value="SERINE/ARGININE RICH SPLICING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="3" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="RRM" evidence="5">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI48281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10506" checksum="CC6CC6F2AD590CEA" modified="2018-12-05" version="1" fragment="single">IGDLWKIFGHYGSVGDVYIPKKVDKWGKRFAFVKFKGVKEVEALTRKLEDVWSGNFKLRVNRARFDRNDQSAQKEVPEDPLVIRQERGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIK2</accession>
    <name>A0A392SIK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010390748">
        <property type="protein sequence ID" value="MCI48728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="63"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9272" checksum="867941BF2F023516" modified="2018-12-05" version="1" fragment="single">MSKALDPRDNYGPPKNTNKTLALGTPSYLNKITASHQPITSIRPQTGIRPSLVTPSSFTSKITNPSSSSNTRPSKLAYYSPPDTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKP9</accession>
    <name>A0A392SKP9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF4283 domain protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010391479">
        <property type="protein sequence ID" value="MCI48784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="102" mass="11788" checksum="59A4300D308C08FF" modified="2018-12-05" version="1" fragment="single">VQSVEKLLVEGELIEIKIVEGWGLSLGEYACQFDDEPGPDSYQSDDEVEHCEPEASNNVDMLVDKFVEDLVTDMEEEEHPRRREKAEDEVKHRKPENVNNEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLA3</accession>
    <name>A0A392SLA3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010404504">
        <property type="protein sequence ID" value="MCI49651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5505" checksum="EB87605BAFDB9314" modified="2018-12-05" version="1" fragment="single">SQGSGAGVLIEVSLGLAFPTTNNQAEYEAFLEGLRLVEDMKAKEIKIYTDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNV6</accession>
    <name>A0A392SNV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010408022">
        <property type="protein sequence ID" value="MCI49874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="12" mass="1267" checksum="DD2414E4A2376729" modified="2018-12-05" version="1" fragment="single">AAVSFLPLTDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ97</accession>
    <name>A0A392SQ97_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010411367">
        <property type="protein sequence ID" value="MCI50090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="80" mass="8651" checksum="139149A4C9DFAB3E" modified="2018-12-05" version="1" fragment="single">MSTTSAILLRVSAKHSLEPTITPAPGDTTALASFGNNKNRYRGGPSNSKPRSNSKCAHCDQSGHDIDNCWVLHGKPPRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SR38</accession>
    <name>A0A392SR38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430224">
        <property type="protein sequence ID" value="MCI51331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SR38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9218" checksum="0E75AC0DAC7ECE68" modified="2018-12-05" version="1" fragment="single">MFQQSLLVWIARGMEIIEPCDGEGSRHSCAVFLVFGSRGVDGHLGLISLPVSLFYILSGIALLNQNFDGVLQMDAIFSYVPVASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRC8</accession>
    <name>A0A392SRC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010431581">
        <property type="protein sequence ID" value="MCI51418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8479" checksum="AA40E59E40C20B58" modified="2018-12-05" version="1" fragment="single">MERPEVDDLQFSRLTLLEGGSLIKPFSVEEVKTAVWDCDSYKSPGPDGINFGFIKDFWLEMQADIMRFMSEFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSH0</accession>
    <name>A0A392SSH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Ty3-I gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010427826">
        <property type="protein sequence ID" value="MCI51164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10864" checksum="FB4212DA9DE525BF" modified="2018-12-05" version="1" fragment="single">GFPRPSSDPPPGCPPPAGLLPTPPSNPRFRHLSEVEMAERREKGLCFNCDQKWSRQHNCCGRLFLFVADTDGVCPSELDLESLIAEDTPSDSDTPVQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSQ2</accession>
    <name>A0A392SSQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010439023">
        <property type="protein sequence ID" value="MCI51893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11008" checksum="EC9BD761041A6730" modified="2018-12-05" version="1" fragment="single">FEDGMPDSDDFLSADEGPHPRPDSSDEFDEFYASADEDWDRNASDWGSIASASNYQSCNDGFNSAISYEFNAMFLASMFSQSSSDEERTSEERNSEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUQ8</accession>
    <name>A0A392SUQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CBL-interacting serine/threonine-protein kinase 8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010437447">
        <property type="protein sequence ID" value="MCI51795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895">
        <property type="entry name" value="CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895:SF114">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI51795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5660" checksum="9532D075B8E05BC2" modified="2018-12-05" version="1" fragment="single">MLRTTCGTPNYVAPEVLSHKGYKGAPADVWSCGVILYVLIAGYLPFDELDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVF4</accession>
    <name>A0A392SVF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010453927">
        <property type="protein sequence ID" value="MCI52858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5979" checksum="4A8DCD7972542F3B" modified="2018-12-05" version="1">MALKDLCSRKLNHPSQEHYGNSKETGQHTMVDGQDNKNTGYSKEALFTNNHTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZV8</accession>
    <name>A0A392SZV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative inactive purple acid phosphatase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010466026">
        <property type="protein sequence ID" value="MCI53605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017341601" evidence="1">
        <location>
            <begin position="25"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9739" checksum="78143D3048A2D4D5" modified="2018-12-05" version="1" fragment="single">MAGSTWKTLLRPLLFLSLFSSTIGKSSSSSNHHHQSTIRCKMAPAAAAERQITMRAGAAFKIALFADLHFGEDAWTNWGPLQDIHSVNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0H0</accession>
    <name>A0A392T0H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010476699">
        <property type="protein sequence ID" value="MCI54272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2934" checksum="C6CC1C39405FFAA5" modified="2018-12-05" version="1" fragment="single">MALNMLINGIGPALWTIYTPLMQRSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0S4</accession>
    <name>A0A392T0S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010472423">
        <property type="protein sequence ID" value="MCI53987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0S4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4076" checksum="37A673C59B6D66C0" modified="2018-12-05" version="1" fragment="single">MLSDEERVGLAKIQTFVNGFQPAQLVTKKGVAVLDSQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2Z1</accession>
    <name>A0A392T2Z1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010480743">
        <property type="protein sequence ID" value="MCI54526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2Z1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI54526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9183" checksum="25559F84F1E7C8B2" modified="2018-12-05" version="1" fragment="single">MDPKSNEGIFLGYSTNSRAYKVFNSRTNTMMESINVVIDDSTTDKVTDEEADATASDQQPEATEDDCNPEQDSEVTNPEPENT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4J0</accession>
    <name>A0A392T4J0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010493953">
        <property type="protein sequence ID" value="MCI55297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4J0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4400" checksum="D485AEE1558E2F94" modified="2018-12-05" version="1" fragment="single">MSKRTRGSPRTRRKLRERARAKGVQEGSRLEESWKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7F2</accession>
    <name>A0A392T7F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010521881">
        <property type="protein sequence ID" value="MCI56988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3106" checksum="07FA8173D207C4D7" modified="2018-12-05" version="1" fragment="single">RSPLSMAGGQLEIRGKTIRGSVCTEAGSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBT5</accession>
    <name>A0A392TBT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010548547">
        <property type="protein sequence ID" value="MCI58569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7617" checksum="33FFD10E35024043" modified="2018-12-05" version="1" fragment="single">VIRKPTTMKMKRKKKRQQDAVLKWIHSEPRIMVPEKRPEGDQCCQDEIRYIIEDEPVQPYPPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEK1</accession>
    <name>A0A392TEK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010563450">
        <property type="protein sequence ID" value="MCI59428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8286" checksum="C3DE1313EC438831" modified="2018-12-05" version="1" fragment="single">SSEFTYKRSELTAEEAEDYDRLVAFVGSFPANLLEDNEGNPILGDNGQRKTSAKLVDTKRLLGCKTPEEAESFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG60</accession>
    <name>A0A392TG60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575364">
        <property type="protein sequence ID" value="MCI60101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10074" checksum="A0561B05618F2587" modified="2018-12-05" version="1" fragment="single">VIEFMELKQGNLSVAEYSAKFEALCVFSLHYNSVEAEEDKCVKFESGLRPDIIQLIGFSEIRDFPTLTAKARICDEDGKAKTSYYKALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI43</accession>
    <name>A0A392TI43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010571525">
        <property type="protein sequence ID" value="MCI59880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7043" checksum="A4B52A7B2E3E39FB" modified="2018-12-05" version="1" fragment="single">DYRSGTCLEVEEVDVSIHWTVSNFGKDRESGLSDCVAAVVEPTRCISCVPIEEVCGGPVTRDRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ76</accession>
    <name>A0A392TJ76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010592795">
        <property type="protein sequence ID" value="MCI61048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4989" checksum="38CAF2E127EC2F36" modified="2018-12-05" version="1" fragment="single">MAEEVQDSLSPAASSYHDASHRRHDSHQGSLRRNSVLIIFAHKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLN0</accession>
    <name>A0A392TLN0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010588981">
        <property type="protein sequence ID" value="MCI60835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="64" mass="7121" checksum="B7C58473746ECB14" modified="2018-12-05" version="1" fragment="single">MADRRAKGLCFKCGGKFHPTLHKCPERSMRVLILGEGEVVNEEGEIVCLEATETEGDEEEIEAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRJ5</accession>
    <name>A0A392TRJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010640697">
        <property type="protein sequence ID" value="MCI63632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="63"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="11"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI63632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9448" checksum="B01858E7262FC600" modified="2018-12-05" version="1" fragment="single">GRAKVNYYKAANERKGKGQERGKPYDSRGRGNTSGGRKPGNGSCYNCGEWGHMSCDCPKKLDRCKNCGKLGHKTEACRGRVVCFNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSR7</accession>
    <name>A0A392TSR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010651777">
        <property type="protein sequence ID" value="MCI64241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6690" checksum="A595DFF107A2B01D" modified="2018-12-05" version="1" fragment="single">MDIMEQMQIFTGGIRIQHTMHLDASTEGSINSKTAEEVKELIEQMCRNEYNMSKRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYK3</accession>
    <name>A0A392TYK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010667065">
        <property type="protein sequence ID" value="MCI64975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9500" checksum="B67074D3F523D8FE" modified="2018-12-05" version="1" fragment="single">PKLRIGWNLLCQLRVARRRWRVAPVSEKNASRASAKCALRSFMWRVAHLHSSPRALRRKGGAARRHEICILKAHFQIWGTFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U595</accession>
    <name>A0A392U595_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010739895">
        <property type="protein sequence ID" value="MCI68629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U595"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8023" checksum="2B1754C7F951D4C4" modified="2018-12-05" version="1" fragment="single">MLQTLALPGRDWYYNTSEGRSRLQITDMKSAAKGGAKWLVRNFESCSNETNIIMSRCHIIYAIMRGEPIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U633</accession>
    <name>A0A392U633_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010733225">
        <property type="protein sequence ID" value="MCI68247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U633"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="9"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6437" checksum="A07A5759A86B6C5C" modified="2018-12-05" version="1">MTFQPQPIQIVDRDVRQLRNRSIPVVKVLWEGSPDGEATWELESEMLRQYPHLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCB3</accession>
    <name>A0A392UCB3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010788320">
        <property type="protein sequence ID" value="MCI71042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1599" checksum="7EEF3D870A4B9164" modified="2018-12-05" version="1" fragment="single">MFAKIERGDFIGNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UE22</accession>
    <name>A0A392UE22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010793379">
        <property type="protein sequence ID" value="MCI71288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UE22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3378" checksum="4E76EF0B3745863F" modified="2018-12-05" version="1" fragment="single">MKKIRNKEIASVKIVWGGPAGDYATWELES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKY2</accession>
    <name>A0A392UKY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010835204">
        <property type="protein sequence ID" value="MCI73284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2390" checksum="6DA81D3365EC83CB" modified="2018-12-05" version="1" fragment="single">SLRQFGFVQLERAVYACCDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL73</accession>
    <name>A0A392UL73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010859391">
        <property type="protein sequence ID" value="MCI74379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="9135" checksum="DCAA296E46365146" modified="2018-12-05" version="1" fragment="single">QLQRQQHQCLHQSQHQQNPIRFQNLSGGNVPVQQNRAIGRNPQASYQPDQFHEEEYQPRNNVAFNPEPDETFFDLQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULK6</accession>
    <name>A0A392ULK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ulp1 protease family carboxy-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010862476">
        <property type="protein sequence ID" value="MCI74513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7474" checksum="2658C98A641CDFB8" modified="2018-12-05" version="1" fragment="single">GQVRGAGRGVTISNYFGRAARSTPNTNVTEKLSQLETKLRADFEEKLAVERQLIQKTMMETLKSIGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UM63</accession>
    <name>A0A392UM63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010865115">
        <property type="protein sequence ID" value="MCI74651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UM63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017421014" evidence="1">
        <location>
            <begin position="24"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3747" checksum="D90F287F12B20D0B" modified="2018-12-05" version="1" fragment="single">LAPSLCLVSTFWLLPAAPRAGHAAPRAGTVQRVDFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQG5</accession>
    <name>A0A392UQG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Tubulin alpha-3</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:19670"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the tubulin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010863328">
        <property type="protein sequence ID" value="MCI74560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005200">
        <property type="term" value="F:structural constituent of cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.600:FF:000001">
        <property type="entry name" value="Tubulin alpha chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.600">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="entry name" value="Tubulin/FtsZ, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002452">
        <property type="entry name" value="Alpha_tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000217">
        <property type="entry name" value="Tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023123">
        <property type="entry name" value="Tubulin_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11588">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01162">
        <property type="entry name" value="ALPHATUBULIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="Tubulin C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0493">Microtubule</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI74560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8600" checksum="5D206C99CA1BADB9" modified="2018-12-05" version="1" fragment="single">PTVVPGGDLAEVKRAVCMISNNTAVSEVFSRIDHKFDLMYAKRAFVHWYVSEGMEEGEFSEARENLAALEKDYDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZV3</accession>
    <name>A0A392UZV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010991244">
        <property type="protein sequence ID" value="MCI80245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2343" checksum="617041D128CE9123" modified="2018-12-05" version="1" fragment="single">MKYTNAKDEVMTINADLEGAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V349</accession>
    <name>A0A392V349_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011050038">
        <property type="protein sequence ID" value="MCI82718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V349"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="30" mass="3561" checksum="9AA3BDC79061C185" modified="2018-12-05" version="1" fragment="single">MYRSGQIASWTQFLQALELRFAPTVYDDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5V6</accession>
    <name>A0A392V5V6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011072709">
        <property type="protein sequence ID" value="MCI83676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5V6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6311" checksum="B8CC0BD92968D76B" modified="2018-12-05" version="1" fragment="single">MAEQGSFIPQSIPKFDGFYDHWAELMENLLRSKEYWSLIEHGIVVAPANATQDQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V950</accession>
    <name>A0A392V950_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011098195">
        <property type="protein sequence ID" value="MCI84737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V950"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47936:SF1">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN GUN1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47936">
        <property type="entry name" value="PPR_LONG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="29"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI84737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6325" checksum="430990A5D596D891" modified="2018-12-05" version="1" fragment="single">MLDAYGKDGQMAAFRSILQMMKESNCASDLYTYNTIINIYGEQGWIEEVADVLAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9G3</accession>
    <name>A0A392V9G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011082477">
        <property type="protein sequence ID" value="MCI84082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6610" checksum="E2CF898D4B5B0330" modified="2018-12-05" version="1" fragment="single">PSDPLVIAPVPPGAPMETVMVALVNAINRKGDFIREQNQRLLSQSQRLLAVEESRVTRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAI8</accession>
    <name>A0A392VAI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011079012">
        <property type="protein sequence ID" value="MCI83941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4565" checksum="C6924AD8F5B2145E" modified="2018-12-05" version="1" fragment="single">MAHRGHHENTVGPLAGHYTRILGPLTGHYTRIQWVLSQGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAS1</accession>
    <name>A0A392VAS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011115459">
        <property type="protein sequence ID" value="MCI85438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3539" checksum="A3AA561E017CB25A" modified="2018-12-05" version="1" fragment="single">MPRVARSKGRRQEEFRLMAHCAGYYGALRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VC74</accession>
    <name>A0A392VC74_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011105403">
        <property type="protein sequence ID" value="MCI85032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VC74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="62" mass="6944" checksum="0C17D6FDD695E3A7" modified="2018-12-05" version="1" fragment="single">MPLRRAPAVPVTEDDRVERMDNSMNVMAAAITAQTNAKTQRDLEKREREVLAAGTRVLTSFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VDX6</accession>
    <name>A0A392VDX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011130919">
        <property type="protein sequence ID" value="MCI86057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VDX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017410869" evidence="1">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4934" checksum="8F998218AB804607" modified="2018-12-05" version="1" fragment="single">MCPCWLWLLCPCRWGFVAVAQSMSVAVVESIFVAVTGDVSMLAGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEK8</accession>
    <name>A0A392VEK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein putative Ty3-gypsy subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011150315">
        <property type="protein sequence ID" value="MCI86818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7808" checksum="C90CC3BCF58083F8" modified="2018-12-05" version="1" fragment="single">AFYLEELPGGSANANIPLLIQADMANFEVRRVLVDPGSSVDIMYARTFETLQLTERNLTPYVGSDLQGFNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHQ7</accession>
    <name>A0A392VHQ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011179376">
        <property type="protein sequence ID" value="MCI87928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI87928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7035" checksum="F81AB24075F2504F" modified="2018-12-05" version="1" fragment="single">CPKKDGRCFKCGDPGHKADQCQKEVVCFNCKEAGHKSNVCKKPRVVGGKVFALDGGDVEADNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQA8</accession>
    <name>A0A392VQA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011225199">
        <property type="protein sequence ID" value="MCI89673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI89673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6309" checksum="5C5FB68C029CA41D" modified="2018-12-05" version="1" fragment="single">MGLGGVLMQRDKVVAYASRQLKTHEKNYPTHDLELAAVVFTLKIWRHYLYGSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTQ7</accession>
    <name>A0A392VTQ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011228317">
        <property type="protein sequence ID" value="MCI89810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4485" checksum="3C96F994BF618423" modified="2018-12-05" version="1" fragment="single">LAARRAGVTCAARRVALLGLGIFWFLRGAQGSAAPRAELSSQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUA5</accession>
    <name>A0A392VUA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Small multi-drug export protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011232616">
        <property type="protein sequence ID" value="MCI90010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009577">
        <property type="entry name" value="Sm_multidrug_ex"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36007">
        <property type="entry name" value="TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36007:SF2">
        <property type="entry name" value="TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06695">
        <property type="entry name" value="Sm_multidrug_ex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5340" checksum="57505861A0AE0DF7" modified="2018-12-05" version="1" fragment="single">MLFVAVPFPGTGAWSGAIIASILEMPFWAAVSANFFGVVFAGLLVNLIVNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVX1</accession>
    <name>A0A392VVX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011255491">
        <property type="protein sequence ID" value="MCI90835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5354" checksum="8B761847579F3905" modified="2018-12-05" version="1" fragment="single">MWMIPRLPPRDDPTVVLESMVRRMVRPSPCIESLPDNGGQAVGPVEHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0L8</accession>
    <name>A0A392W0L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011349266">
        <property type="protein sequence ID" value="MCI94178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6456" checksum="A4DB0E8B400C349A" modified="2018-12-05" version="1" fragment="single">CIYDCDNHTTAALWNPATADVKVIPPGSAEFQGQFTTEIVLHGFGYDRVSDDYKVIQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W417</accession>
    <name>A0A392W417_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011385110">
        <property type="protein sequence ID" value="MCI95378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W417"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2079" checksum="4392754A01C671AD" modified="2018-12-05" version="1" fragment="single">MPSSDVGPDVVTLGTTSRYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7E0</accession>
    <name>A0A392W7E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011418833">
        <property type="protein sequence ID" value="MCI96588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="3870" checksum="4526D5A44F85DC77" modified="2018-12-05" version="1" fragment="single">GADGALRRVADTGLEILLAPASRAGKDGTSRQQMGKTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA59</accession>
    <name>A0A392WA59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011391601">
        <property type="protein sequence ID" value="MCI95600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6284" checksum="BDFADB0112C7AD79" modified="2018-12-05" version="1" fragment="single">MSSGSKNGQKSTKVNPVNSDCAGRDWQGQNVASKSSLAQGCSHRAARRPRTDLQLKWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA78</accession>
    <name>A0A392WA78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011421870">
        <property type="protein sequence ID" value="MCI96703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6866" checksum="ACD5A5B9A142B252" modified="2018-12-05" version="1">MDRNEAVFYEQYGAHMRAQEEQRAPASASAAAASHGSPIFTYGELGLDDSPGDFQNFMDPPASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WHK9</accession>
    <name>A0A392WHK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serpin-ZX</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011444683">
        <property type="protein sequence ID" value="MCI97480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WHK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.497.10">
        <property type="entry name" value="Antithrombin, subunit I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042178">
        <property type="entry name" value="Serpin_sf_1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5678" checksum="F195CF03C0BBE7B7" modified="2018-12-05" version="1" fragment="single">MVAAGSEGRTQHQLLSFLQSKSTDHLKSLFSHLISDVLSDGAPVGGPRLAFVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBU6</accession>
    <name>A0A392NBU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032717">
        <property type="protein sequence ID" value="MCH96585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="29346" checksum="ACFAF6C4D1CB2D56" modified="2018-12-05" version="1">MSHDDVQPAALLEVRQCDTSLDETPGEPIETLFVTSDEHTISNIKSSECMEEIIPQVSTVQSDLDELYTDTLEIDQSCEIFSCECGVCNVCCEINAAIVGEEILMSTTTCAEIQKNSITIEFDTKSVDVSHKQPLPIAERLLVEPLIKPHNKQLSFTICASLPPVLSDSQTKWGFSNFHTFVSAGLPYVLAIPPKPPDFLLISRFTCDLLVPVSCIRSEERPPPKPPDFLLISKFTCCLLFPASYICSAERPPRKPPDMEAPAATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWA6</accession>
    <name>A0A392NWA6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">phospholipase D</fullName>
            <ecNumber evidence="4">3.1.4.4</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1,2-diacyl-sn-glycero-3-phosphate + choline + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14445"/>
            <dbReference type="ChEBI" id="CHEBI:15354"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="3.1.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the phospholipase D family. C2-PLD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.4" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010052252">
        <property type="protein sequence ID" value="MCI03459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004630">
        <property type="term" value="F:phospholipase D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.870.10">
        <property type="entry name" value="Endonuclease Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015679">
        <property type="entry name" value="PLipase_D_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896:SF176">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00614">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56024">
        <property type="entry name" value="Phospholipase D/nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="PLD phosphodiesterase" evidence="9">
        <location>
            <begin position="257"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI03459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="34488" checksum="15A2CC90637A9F59" modified="2018-12-05" version="1" fragment="single">MIDNPKWNENFHIYSAHSISSIIFTVKQDKPIGATLIGRAYVPVEQVIKGNIVNTWIQILDVEHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPQFQGVPHTFFKQSNGCQITLYQDAHVIDGSIPYIPLDGVERYVPGKCWEDIYSAINDAKHFICITGWSVYTEITLIRDLNKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMETHDQEIGEYFRNTNVHCVLCPRNPGHGRSIVQGFEISTMFTHHQKTIIVDSRIVGSGQWNKRTITSFVGGIDLCDGRYDTMEHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P459</accession>
    <name>A0A392P459_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative carboxylesterase 11</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063303">
        <property type="protein sequence ID" value="MCI06853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P459"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="2">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI06853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6536" checksum="D3F2B8B31D1A772D" modified="2018-12-05" version="1" fragment="single">MPPTLTVVAEHDWMRDRAIAYSEELRRVNVDAPVLEYKDAVHEFATLDVLIKSPQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P474</accession>
    <name>A0A392P474_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060707">
        <property type="protein sequence ID" value="MCI06096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P474"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4151" checksum="C0A006CF5CFCE90B" modified="2018-12-05" version="1" fragment="single">MWRARVSMKKETPLNFLTDSHQGRSTLRLEDVLAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P668</accession>
    <name>A0A392P668_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063382">
        <property type="protein sequence ID" value="MCI06880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P668"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31587:SF3">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31587">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN (DUF2215)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9943" checksum="31820CB8BC87574F" modified="2018-12-05" version="1" fragment="single">VVSSSSGSSPQTYSIIHNIDNRKEFTKKEWDDFTSNSTKQALAELAASKTFTDWLIEHPDRVERISLLSNCHTKQDVAKIATSPWFIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P714</accession>
    <name>A0A392P714_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Separase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065911">
        <property type="protein sequence ID" value="MCI07582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P714"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="19111" checksum="B4792B7352CAD39E" modified="2018-12-05" version="1" fragment="single">RIAEDLKAALSLWPNDKTLPTIMFYNIIDLLQLKGPMEDVYSLLINSFKEQKSISSALDWFSALWKARRLNHPLCCSPISESFIPHLSEQLHQRSSTLFKDASDERYFVEKLSKDEASTFGLAYAHLERSRQEASTGDVDEVHMHNIHLSLLDLIYVYLKMVIFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P746</accession>
    <name>A0A392P746_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064575">
        <property type="protein sequence ID" value="MCI07210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P746"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8767" checksum="0E95535AF5BB85F2" modified="2018-12-05" version="1">MTVDRERGQHSSISAARLTVVVVGDERWRWIEREMSTQSHSSRFTTRLTMVREREMPTLLQICSEANSDGGDVDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCD4</accession>
    <name>A0A392PCD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Swarming motility protein ybiA</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071529">
        <property type="protein sequence ID" value="MCI09149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="271" mass="30994" checksum="95AC1D9956389317" modified="2018-12-05" version="1" fragment="single">HWRTPETLKMIVAGLAMKGPALTWWLRWYPHHRWMNWDEFTNAFLWQFKPEWRVILLLPDDEEKPISESSPSSEPYFDSLVTDSTKIVDDLSDSALDNMQWIGEFQREDGFGVQRDTKLMMNTTGDCNSGIVATPELPNADLPASNPFYPSIEPITTHSFHNEDTLQFDXPQSKVTNDDVVRNQGLSLHCEIPPALHFMSIGNNQARRMEPKFRLHCDNLWAEITVVPLTASIKTCLSYDRRNVPTQSPPQKPPDCAVSNPLLPLKPPNMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCV8</accession>
    <name>A0A392PCV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent helicase rhp16-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072728">
        <property type="protein sequence ID" value="MCI09457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050628">
        <property type="entry name" value="SNF2_RAD54_helicase_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626:SF12">
        <property type="entry name" value="DNA REPAIR PROTEIN RAD16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626">
        <property type="entry name" value="TRANSCRIPTION TERMINATION FACTOR 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI09457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10271" checksum="71A93A9488040F71" modified="2018-12-05" version="1" fragment="single">VASFIAQSQVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSNEALGKLTVADLKFLFAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDV3</accession>
    <name>A0A392PDV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071205">
        <property type="protein sequence ID" value="MCI09045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9746" checksum="6FE85B3E6D17B9D4" modified="2018-12-05" version="1" fragment="single">ELLIPPTIEDDDGVHMKKMNVIVAITMSFNMVIYRYARRFKDDIHMYTHMQRSIQEKQTCLNAFEESFYKSEEQTLEAVGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM40</accession>
    <name>A0A392PM40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-D-xylosidase 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087087">
        <property type="protein sequence ID" value="MCI13148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009505">
        <property type="term" value="C:plant-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009044">
        <property type="term" value="F:xylan 1,4-beta-xylosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031222">
        <property type="term" value="P:arabinan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="entry name" value="Glycoside hydrolase, family 3, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044993">
        <property type="entry name" value="BXL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721:SF3">
        <property type="entry name" value="BETA-D-XYLOSIDASE 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721">
        <property type="entry name" value="SUGAR HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 3 N-terminal" evidence="3">
        <location>
            <begin position="16"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI13148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11670" checksum="8956E4CD1A9FA660" modified="2018-12-05" version="1" fragment="single">AIGIEARAIYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLMTSNYAVSYVRGIQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFLFDAKVSNYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM86</accession>
    <name>A0A392PM86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087277">
        <property type="protein sequence ID" value="MCI13198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4748" checksum="175D222EF3653129" modified="2018-12-05" version="1" fragment="single">MATAAVKLVFSDISMGRVAVFSGGLEADACLSKNGIRIGSPLGSVCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMH5</accession>
    <name>A0A392PMH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NC domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086389">
        <property type="protein sequence ID" value="MCI12982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007053">
        <property type="entry name" value="LRAT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46137">
        <property type="entry name" value="OS05G0310600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46137:SF4">
        <property type="entry name" value="PROTEIN LEAD-SENSITIVE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04970">
        <property type="entry name" value="LRAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51934">
        <property type="entry name" value="LRAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LRAT" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8279" checksum="DDFE104FEA47D187" modified="2018-12-05" version="1" fragment="single">MTGIYIGDDKVVHFTRRGQEVGTGTVLDVLLLSSGPARSQELCPNCTTSQDGHGVVVSCLNCFLAGGVLYKFEYAVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPI1</accession>
    <name>A0A392PPI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090531">
        <property type="protein sequence ID" value="MCI13998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5238" checksum="9834AF50D10F2781" modified="2018-12-05" version="1" fragment="single">KPRWSSKLDMEILAARSEIEHAPTVTHDKELYAPLFRNHSMFKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PS13</accession>
    <name>A0A392PS13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Scarecrow-like protein 23-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091025">
        <property type="protein sequence ID" value="MCI14106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="VHIID" evidence="5">
        <location>
            <begin position="157"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="LxCxE motif" evidence="5">
        <location>
            <begin position="82"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="VHIID" evidence="5">
        <location>
            <begin position="188"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="54"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="unsure residue" description="D or N" evidence="7">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI14106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="24639" checksum="D74B314A24B0F7D6" modified="2018-12-05" version="1" fragment="single">MLQSLVPRPPLTSKPNNNMNAKRAEREHDDDDSTLQEQPSFKRPNYSAENTAVEAEEHDQEQAFEPENEGESTGLKLLGLLLQCAECVAMDNLDFANXLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRIHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVC6</accession>
    <name>A0A392PVC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transmembrane protein 53-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099185">
        <property type="protein sequence ID" value="MCI16053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16203" checksum="87AA0D9A5D0D88B8" modified="2018-12-05" version="1" fragment="single">MSSFSGAIQRPLVAAAAVAAASLSTEKFPFIGSSRDCSTSNFDHSSTSNSLQESYSSLVSRISDSKLANLYFVNKIRVPVPNVNYRVPALGSNLYYSSVASSPIVQDLYQSAELTRFSRLSSSSTSYNGVSNSTSEFMYKWHLPEPNAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVW7</accession>
    <name>A0A392PVW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098795">
        <property type="protein sequence ID" value="MCI15964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20587" checksum="FA7D5107E2FB4023" modified="2018-12-05" version="1">MDQCNKVCSPMVPGNKLIRDENGRTIDATSYRQMTGCLMYLLAARSDLTFSVCLIARYMERPTEMHLTAAKRVMRYLKGTMDLGIWYKRNESMKLVGWSDSDYAGDLDDRKSTSGYVFMLGSSSISWSSKKQAIVTLSTTEAEFVAAASCACQDIWLRRILEQLGQIQQCTIINCDNSSSIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWK1</accession>
    <name>A0A392PWK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099805">
        <property type="protein sequence ID" value="MCI16194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045282">
        <property type="entry name" value="At4g08330-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33674">
        <property type="entry name" value="METHIONINE-S-OXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33674:SF8">
        <property type="entry name" value="OS01G0833400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24046">
        <property type="entry name" value="At4g08330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17511" checksum="51E100C8D3C34FD5" modified="2018-12-05" version="1" fragment="single">MICQSGGTVFCFLIVAFTIPYLYIFCSCGACGYELNLSSSNRNTTSIGSKYGKSIKRGIIPFFNIDDSRFMQVDEIKCVPHFHKRSWGLFRRRTKLLCRKCGNHIGNAYDGYTSSSPLVSNGAESPPSSKAASSVKYDIRLRSLQPSSSEESRIPVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q573</accession>
    <name>A0A392Q573_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113020">
        <property type="protein sequence ID" value="MCI19047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q573"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9145" checksum="5C88150965F11C6A" modified="2018-12-05" version="1" fragment="single">MLRRFGFCDKWIGWMRACTFAGNLSVLVNGSPTGEICIQRGLKQGDPLAPFLFLMVVEGLSGVVSKAVELGIFKGLAVGSSPVVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q683</accession>
    <name>A0A392Q683_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113836">
        <property type="protein sequence ID" value="MCI19230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q683"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8630" checksum="5BE34E4CD8A5F272" modified="2018-12-05" version="1">MEHLHLEEEDEIEIPEEEIVKAREGFNLDLCLPAWWGHSLPTNRMGSGAEGGGAPTEHKRGWKMAEDRGIVINVAHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q821</accession>
    <name>A0A392Q821_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117551">
        <property type="protein sequence ID" value="MCI19989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q821"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6660" checksum="8210357ADB4D2BFA" modified="2018-12-05" version="1" fragment="single">PSRASEPISTSEAARFKGYIASEAKTLQRLYSFRVWKTSETERFRSWEASELLKTFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8Y5</accession>
    <name>A0A392Q8Y5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118592">
        <property type="protein sequence ID" value="MCI20190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8Y5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4107" checksum="EE3044E41783F8D8" modified="2018-12-05" version="1" fragment="single">MFVDICGYRGDGEKYSPVTGIGDGEQIWGRGGEWGSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDF1</accession>
    <name>A0A392QDF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010129044">
        <property type="protein sequence ID" value="MCI22178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5203" checksum="4BC1475EFD721C12" modified="2018-12-05" version="1" fragment="single">VVSVFRSSDTVLVSVSSDAVSVFGSSDAVFVSGSSDTVLVSGSSDTVAAGMRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QEY1</accession>
    <name>A0A392QEY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein trichome birefringence-like 4</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PC-esterase family. TBL subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130569">
        <property type="protein sequence ID" value="MCI22449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QEY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016413">
        <property type="term" value="F:O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029962">
        <property type="entry name" value="TBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026057">
        <property type="entry name" value="TBL_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32285:SF241">
        <property type="entry name" value="PROTEIN TRICHOME BIREFRINGENCE-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32285">
        <property type="entry name" value="PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13839">
        <property type="entry name" value="PC-Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Trichome birefringence-like C-terminal" evidence="2">
        <location>
            <begin position="5"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI22449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10708" checksum="5CA0180467110227" modified="2018-12-05" version="1" fragment="single">MIQASKSQYYDADIIIFNTGHWWNHDKTKNGRNYFQEGNHVYERLEVSEALRKALKTWAKWVDTTVDSTRTRVFFTGFSASHYRGGQWNSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQI7</accession>
    <name>A0A392QQI7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Replication factor A C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151484">
        <property type="protein sequence ID" value="MCI26132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="80" mass="9164" checksum="237325950BEE7C71" modified="2018-12-05" version="1" fragment="single">MKLKVRDGEEEAMFCLFDEDVEKLATETCPLLASMGEACSLFPDEMECMYGDAVLYKVEKTEYEDKESSLFFKVSSICHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR28</accession>
    <name>A0A392QR28_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Tyrosyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>tRNA(Tyr) + L-tyrosine + ATP = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010152335">
        <property type="protein sequence ID" value="MCI26284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QR28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050489">
        <property type="entry name" value="Tyr-tRNA_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264:SF4">
        <property type="entry name" value="TYROSINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264">
        <property type="entry name" value="TYROSINE-TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI26284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5492" checksum="7A7B6248DC1EFE85" modified="2018-12-05" version="1" fragment="single">MDQRKVNVLAREYCDLIKRKNKPIILSHHMLPGLKQGQEKMSKSNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSE1</accession>
    <name>A0A392QSE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158549">
        <property type="protein sequence ID" value="MCI27303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6372" checksum="FE4C0FED771955F2" modified="2018-12-05" version="1" fragment="single">IRRPEDTPSLARGAKASALGAGRAQILGLATGLVAGLITLGATRTHDASPWPRHRRPRAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSI5</accession>
    <name>A0A392QSI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091102">
        <property type="protein sequence ID" value="MCI14129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010156367">
        <property type="protein sequence ID" value="MCI26949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049500">
        <property type="entry name" value="Peptidase_M50B-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33979">
        <property type="entry name" value="OS02G0221600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33979:SF2">
        <property type="entry name" value="PEPTIDASE M50B-LIKE-DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13398">
        <property type="entry name" value="Peptidase_M50B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6093" checksum="2C7E5F5C8CD55DD1" modified="2018-12-05" version="1" fragment="single">ADIYDDLISRRVHSSDAEKFAEVCPCPCTGVGWGVIWGLISFAFLCGAVYLGAVILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2W2</accession>
    <name>A0A392R2W2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010180588">
        <property type="protein sequence ID" value="MCI30569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2W2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3387" checksum="E02325558717D01B" modified="2018-12-05" version="1">MDPGSLLQPLSPSLSFSNPDVAVVGDDAAAKDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R3P1</accession>
    <name>A0A392R3P1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Prolyl endopeptidase</fullName>
            <ecNumber evidence="3">3.4.21.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S9A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.-" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010177645">
        <property type="protein sequence ID" value="MCI30175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R3P1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070012">
        <property type="term" value="F:oligopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002471">
        <property type="entry name" value="Pept_S9_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002470">
        <property type="entry name" value="Peptidase_S9A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051167">
        <property type="entry name" value="Prolyl_oligopep/macrocyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42881">
        <property type="entry name" value="PROLYL ENDOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42881:SF14">
        <property type="entry name" value="PROLYL ENDOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00862">
        <property type="entry name" value="PROLIGOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00708">
        <property type="entry name" value="PRO_ENDOPEP_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase S9 prolyl oligopeptidase catalytic" evidence="4">
        <location>
            <begin position="45"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU368024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI30175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="13677" checksum="A59B4A725F284AF1" modified="2018-12-05" version="1" fragment="single">VFVPSKDGTKIPMFVVARKDIVLDGSHPCLLYGYGGFNISLTPFFSVSRIVLAKHLGSVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5K6</accession>
    <name>A0A392R5K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peroxisomal acetoacetyl-coenzyme A thiolase</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186746">
        <property type="protein sequence ID" value="MCI31384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18919">
        <property type="entry name" value="ACETYL-COA C-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18919:SF168">
        <property type="entry name" value="PEROXISOMAL ACETOACETYL-COENZYME A THIOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase N-terminal" evidence="4">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI31384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8155" checksum="3D1CBD257D7F8CC6" modified="2018-12-05" version="1" fragment="single">LGAGIPTSVICTTINKVCSSGMKATMIAAQTIQLGHNDVVVVGGMESMSNAPKYIAEARTLLKLCYVVAAYKSAFDET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6B7</accession>
    <name>A0A392R6B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188636">
        <property type="protein sequence ID" value="MCI31632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12198" checksum="CCB74038C9A8C582" modified="2018-12-05" version="1" fragment="single">ALQQNKTWIIVDAPPNVKPIGSRWVYKVKHKADGSIERYKARLVAKGYTQVEGIDFFETFSPVAKITTVRTLLALAAIHSWHLHQLDVNNVFLHGDLQEEVYMSIPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R767</accession>
    <name>A0A392R767_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010189368">
        <property type="protein sequence ID" value="MCI31706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R767"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF524">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, PROTEIN KINASE RLK-PELLE-DLSV FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11737" checksum="41CF93DC0DCB3068" modified="2018-12-05" version="1" fragment="single">MYALRRILRYIQGTCHYGLHLYPSSITSLISYTDADWGGCPDTRRCTSGYTACFLAIIYSHGRPRGNPPYLVIVLKPSIMGLPMWSLNPVGYEIFYSSYIVQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R9Z3</accession>
    <name>A0A392R9Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010200106">
        <property type="protein sequence ID" value="MCI32942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R9Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="12"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16408" checksum="2CA3EAB0E4647453" modified="2018-12-05" version="1" fragment="single">VESDKVDVTIPVNVSDSANVNNNNLVHKSPAQIQQNSPINVSDSSGSKKTGNSSQQFMPHQNRFEALKDQELEEGSQNSKQQELQNSNKSTASSQQIDRGKAIVTVLRPEAILKEQYRRLEDELNETETEKEKSDKNCDVSSTQDTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF26</accession>
    <name>A0A392RF26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010220968">
        <property type="protein sequence ID" value="MCI35181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6784" checksum="E0EE4C203F57054B" modified="2018-12-05" version="1" fragment="single">FTIEGIDMLRKVVDGQIVIPGEYKQMEMEEEEEEVEEGDAEDGSEEGNQEGFEEGQGESDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RK23</accession>
    <name>A0A392RK23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010230586">
        <property type="protein sequence ID" value="MCI36120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RK23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4016" checksum="04974C56B3737BE6" modified="2018-12-05" version="1" fragment="single">MMKQAQTRRQEAAAAHESEDKSIFIKGCSKGFSKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RN62</accession>
    <name>A0A392RN62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NPL4-like protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010239597">
        <property type="protein sequence ID" value="MCI36995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10544" checksum="7FF4575093BC8157" modified="2018-12-05" version="1" fragment="single">VNEEMGGADVHFEAFQMSDVCIRLFKEGWFDTDVKEDHDPKLSIMXXXXXXXXXXXXXXXXXXFLVVVKISDHQINYKACLYSAAKMDKALIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNA7</accession>
    <name>A0A392RNA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010247950">
        <property type="protein sequence ID" value="MCI37747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13056" checksum="0865CF96A95F9D68" modified="2018-12-05" version="1" fragment="single">MEETLTQFIQMTQDNFEAMKKSQEVSNKNHEASIKNLEIQMGQLSRQFSNLQNSGGFGGNTQDNPKNENCKAINLRSREVPDPRVSERPRKKKGSEGEVEKEREGVVENESNEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQF3</accession>
    <name>A0A392RQF3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cysteine-rich receptor-like protein kinase</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010255857">
        <property type="protein sequence ID" value="MCI38432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="41" mass="4767" checksum="2EAB4B882C3DCCA8" modified="2018-12-05" version="1" fragment="single">MAREMRGRRGWFAKDIERRVGNGVETLFWSDPWLGGVPFSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVP3</accession>
    <name>A0A392RVP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein FAR1-RELATED SEQUENCE 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010279818">
        <property type="protein sequence ID" value="MCI40449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052579">
        <property type="entry name" value="Zinc_finger_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31569">
        <property type="entry name" value="SWIM-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31569:SF4">
        <property type="entry name" value="SWIM-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MULE transposase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI40449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13602" checksum="B6DBC63C106F2299" modified="2018-12-05" version="1" fragment="single">NKYRLPLFEIVGSTSTGKTYSVAFAFLTKEKEDNFVWALPSFRGILRCQDDMKVIVTNRDQTLMNAVNIVFPKCTPLLCRYHILKNIKANFIKKAKLGKKSEKMQSMEKRENTLGKHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RW81</accession>
    <name>A0A392RW81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">U5 small nuclear ribonucleoprotein 200 kDa helicase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010279507">
        <property type="protein sequence ID" value="MCI40417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RW81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050474">
        <property type="entry name" value="Hel308_SKI2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961:SF4">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961">
        <property type="entry name" value="DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI40417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11888" checksum="3D2204D5528CB61E" modified="2018-12-05" version="1" fragment="single">MLAMTKPTYTAIVQHAKNGKPALVFVPTKKFVQFTAMDLMTYSSAESGEKSFLLRPTKELEPFINKINDEMLKVTLREGVGYLHEGLNNLDHDIVTELFKAGWIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RY30</accession>
    <name>A0A392RY30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010286374">
        <property type="protein sequence ID" value="MCI40994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RY30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10867" checksum="6A7379DB465A3A5C" modified="2018-12-05" version="1" fragment="single">EEGDLEGWGKLIDIPEKKNRYGLGYQPSAAVFSIFGHGKIPTIQETFRNAGFIHEGQVALLEDTDEAIPNLVYRCTPDEALDNWKAMEIPEIVSFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SA17</accession>
    <name>A0A392SA17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010348704">
        <property type="protein sequence ID" value="MCI45793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SA17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10148" checksum="FA9D3BD54A23D6D6" modified="2018-12-05" version="1" fragment="single">MQAEYSALMTNNTWSLVPMPAHRRAIGCKWVFRIKENPDGTINKYKARLVAKGFNQEQGFDFQETFSPVVKPVTIRVILTLALSFQWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SW69</accession>
    <name>A0A392SW69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anthocyanin 3'-O-beta-glucosyltransferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010451434">
        <property type="protein sequence ID" value="MCI52702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SW69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017319740" evidence="1">
        <location>
            <begin position="22"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="8022" checksum="51D3125CE4EA0485" modified="2018-12-05" version="1" fragment="single">MGVGRRVRLGMVLMWHAVVWSIWTSRDDIIFAGRSSTIDNLVDRVKLSSKKWFLSKNPDSPCFFYEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0G3</accession>
    <name>A0A392T0G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010482390">
        <property type="protein sequence ID" value="MCI54631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7730" checksum="F9741C5ED813B79F" modified="2018-12-05" version="1" fragment="single">MTFCPSSALNDMSRLEREVWCPIDITSNADCLTYRLLAELDAPTPVNPPAIVLTVTRPLSPLPSSTLFPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7S9</accession>
    <name>A0A392T7S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010512789">
        <property type="protein sequence ID" value="MCI56467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7465" checksum="6F65CCEDBCA01119" modified="2018-12-05" version="1">MRNCEEKCNVWFWKNRLRRRKSPMGRNSDVKMLLEISPGERFWRLVHGFVAMSVLRNRDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8S0</accession>
    <name>A0A392T8S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010525371">
        <property type="protein sequence ID" value="MCI57222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932">
        <property type="entry name" value="ATPASE EXPRESSION PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932:SF8">
        <property type="entry name" value="PPR CONTAINING PLANT-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="28"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI57222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8751" checksum="1728BA9CB832A48E" modified="2018-12-05" version="1" fragment="single">MKGLCLTNRIGEGFKLLQLIKSNGVTPNAVIYNTLLHALCRNGKVGRARSLMNEMVEPNDVTFNILISAYCKEENLVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9W2</accession>
    <name>A0A392T9W2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010525553">
        <property type="protein sequence ID" value="MCI57237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9W2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10452" checksum="FBFCADFDE0336790" modified="2018-12-05" version="1" fragment="single">KKTHSFTDVAARREDNGLRTAQRHGEKNNGLKTAQRHGEMNDGLRTTQREERRVDDDGRKSITTLERVIRRRRWRFLSRSTHPLPSSTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEA2</accession>
    <name>A0A392TEA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010564117">
        <property type="protein sequence ID" value="MCI59461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9966" checksum="D3D851F4490A6C59" modified="2018-12-05" version="1" fragment="single">KEEGVIITRDDIAKVSPLKQMKDSSDSEEDLPASEDKITAEGKGKEQMVSAAATPKRKRDDKEKMEKIVEGKKKSTKKPRTQKKRAPKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFI1</accession>
    <name>A0A392TFI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010553533">
        <property type="protein sequence ID" value="MCI58896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4491" checksum="49B8C609DB25E670" modified="2018-12-05" version="1">MVTLTFVFHIRGLLPPLDDGALPDAVSREDDSDFVEYPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGL9</accession>
    <name>A0A392TGL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010579162">
        <property type="protein sequence ID" value="MCI60309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6020" checksum="2B949122509248D1" modified="2018-12-05" version="1">MMNIVAYNTTSSLALNILSSHHDSPPNASTSPHESGPISHPKAPVGKQGPYAGTSILH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIH9</accession>
    <name>A0A392TIH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010573831">
        <property type="protein sequence ID" value="MCI60020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017388368" evidence="1">
        <location>
            <begin position="22"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7486" checksum="DB1DC065CC1D5AD4" modified="2018-12-05" version="1" fragment="single">FFYMTSLPTAVTLVLPVPSFAISSPVAINATVKAASRTRRWTSTQIFPRIPRVTGTPRNLNNQNPKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ55</accession>
    <name>A0A392TJ55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010591605">
        <property type="protein sequence ID" value="MCI60992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9890" checksum="732D32C29EBF6EE0" modified="2018-12-05" version="1" fragment="single">GEAKGKWTEELHSILWSYRTSPHSTTGETPFRLTYRTEAVIPVEIGASSFRAGIPVGDEMNNEMLREELDLLEELRDGAALREASLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLH6</accession>
    <name>A0A392TLH6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010606882">
        <property type="protein sequence ID" value="MCI61808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="63" mass="7130" checksum="238F817E318CED2F" modified="2018-12-05" version="1" fragment="single">EGAVKWVEEAEIIFEAMGCTEENKIALGTYVLREEANQWWKNVKLRMGAGGIVITWEISKESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLT0</accession>
    <name>A0A392TLT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010612854">
        <property type="protein sequence ID" value="MCI62103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4513" checksum="B65F19D4A496FD20" modified="2018-12-05" version="1" fragment="single">MTRSNTGRTLLQGGNAKNLSARDDVVAEEDAEVVAENIDVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLU8</accession>
    <name>A0A392TLU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010593567">
        <property type="protein sequence ID" value="MCI61100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3542" checksum="AE4EEAAA6D3998B5" modified="2018-12-05" version="1" fragment="single">MLVDRGGCGLECWQLGMGLRVADSGMEVGGGLCGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMN1</accession>
    <name>A0A392TMN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010599202">
        <property type="protein sequence ID" value="MCI61400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4474" checksum="57818628D41917B5" modified="2018-12-05" version="1" fragment="single">MKVALFKSQYCQSIDRCRKEEGGQQWKVEEVGGGGKWKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQQ2</accession>
    <name>A0A392TQQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010638748">
        <property type="protein sequence ID" value="MCI63529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03185">
        <property type="entry name" value="GST_C_Tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045074">
        <property type="entry name" value="GST_C_Tau"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="GST C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutathione S-transferase C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8817" checksum="5BC800A2EB9C8D90" modified="2018-12-05" version="1" fragment="single">GEEIGLVDITGVFIAFWFPVIQEVAGLNVFNNEKFPKLYKWSKDLTNHQVVKEKLPNRETLLAYFRARYESLVASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTE1</accession>
    <name>A0A392TTE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631406">
        <property type="protein sequence ID" value="MCI63115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2048" checksum="F12076382C1D3AA1" modified="2018-12-05" version="1" fragment="single">MEWRWRAAADEDGGGGGGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0M8</accession>
    <name>A0A392U0M8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010706568">
        <property type="protein sequence ID" value="MCI66992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0M8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4604" checksum="35E3D066F827636B" modified="2018-12-05" version="1" fragment="single">MNETGRLSIADKRLLSATEKNNYMRHHKVKDIIVGAINHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U3I2</accession>
    <name>A0A392U3I2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010698419">
        <property type="protein sequence ID" value="MCI66595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U3I2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9244" checksum="E72254FE25307C44" modified="2018-12-05" version="1" fragment="single">TQGLRPQTRMILDASARGSLKNCDETQARELIETMAQNEYRSQNDRGAKKKAGVLELDAQSAILAQSKLMTNQMEAMLKLMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U800</accession>
    <name>A0A392U800_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010746432">
        <property type="protein sequence ID" value="MCI68957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U800"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6135" checksum="C7F5CE9DDEF53AFA" modified="2018-12-05" version="1" fragment="single">MRNKNELQIQTKQNGDGDNFHAGGKRHGLKDDAAEEAHAPSRSDRISTSERQCLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9G9</accession>
    <name>A0A392U9G9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010769681">
        <property type="protein sequence ID" value="MCI70151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9G9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6028" checksum="DA51C13793044203" modified="2018-12-05" version="1" fragment="single">SYYPSHIHLKTLMDVEDKAHDIRGSIGGMTSWLDIMENKKKEKLSESFHLIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAE6</accession>
    <name>A0A392UAE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010776892">
        <property type="protein sequence ID" value="MCI70479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8561" checksum="2B0B6FC6BBF1622E" modified="2018-12-05" version="1" fragment="single">MQETDVVITEGNTQPDESVNPNSSDEKENDPVDKTNNDNTEVVDVENLVSESPVKKTPSDSIAKRLRTRSGKASVSTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UB52</accession>
    <name>A0A392UB52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010782448">
        <property type="protein sequence ID" value="MCI70759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UB52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6994" checksum="F19BF484905E0FCA" modified="2018-12-05" version="1" fragment="single">PPKCEFPHPIGDPILGSTPAPPPSRTMALIPLVGESEGTREKQWGQCSRTTREGDATSPPKTLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBB0</accession>
    <name>A0A392UBB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010783402">
        <property type="protein sequence ID" value="MCI70811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3885" checksum="5DFE14B191B48B20" modified="2018-12-05" version="1" fragment="single">EDWRPSCCLGQPVVDPCLSLPKGYSCSRSGVFERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCE9</accession>
    <name>A0A392UCE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010768709">
        <property type="protein sequence ID" value="MCI70096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4664" checksum="51B81B48FC5C764C" modified="2018-12-05" version="1" fragment="single">IQNSDFNELVEFQHSTREWVKAVNKEYELAQLKKKKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEE0</accession>
    <name>A0A392UEE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010768698">
        <property type="protein sequence ID" value="MCI70095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4507" checksum="FCD29C07CBEE7FC5" modified="2018-12-05" version="1" fragment="single">DFLVAASGAIVGALAGVEEGALAVAVVEPDTKRQFLLISTQEHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIZ0</accession>
    <name>A0A392UIZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010821287">
        <property type="protein sequence ID" value="MCI72594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8176" checksum="FAE5FBD15B080B77" modified="2018-12-05" version="1" fragment="single">KSSNVDSNVAASGTSEIVADVNASETLGFDKPRSDENLGKDDTNPSVEDTSVVEASTKADVNPTVDPVQKVGSETHADQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJE2</accession>
    <name>A0A392UJE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010845343">
        <property type="protein sequence ID" value="MCI73743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6014" checksum="17681F227AE92357" modified="2018-12-05" version="1" fragment="single">MQSDVEADAHVKITQEIKPLKRYTIEGLVVTSDGEVLALVEDADDKMIKTRSII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UK47</accession>
    <name>A0A392UK47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010847640">
        <property type="protein sequence ID" value="MCI73832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UK47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4198" checksum="7FCF929EAB2F1BCD" modified="2018-12-05" version="1" fragment="single">GFSGVLARSRLRSFSRISGGMFVVVSDGGFSDDLGSESLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN40</accession>
    <name>A0A392UN40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010874207">
        <property type="protein sequence ID" value="MCI75059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3881" checksum="2FB04CE2E2F278FE" modified="2018-12-05" version="1" fragment="single">SSVVKSKLVKPKASKCCSLSEAVPEATLLARLLKPPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVU0</accession>
    <name>A0A392UVU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010988284">
        <property type="protein sequence ID" value="MCI80118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5024" checksum="2B8AE19B204FA8D1" modified="2018-12-05" version="1" fragment="single">QEDGVISKTGAGVVFEAHVLSRSGKVFESSRRRVGYVCVVKDGRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ91</accession>
    <name>A0A392UZ91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011012934">
        <property type="protein sequence ID" value="MCI81187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5906" checksum="BAF172287583D516" modified="2018-12-05" version="1" fragment="single">MLKLTNPFLEEVKECQKRDQKLVEKLVLIREGKEVDFGVDENGVVRYRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6G8</accession>
    <name>A0A392V6G8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011033870">
        <property type="protein sequence ID" value="MCI82050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6G8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8158" checksum="F1481A4C43CDC10E" modified="2018-12-05" version="1" fragment="single">CEESFQELKKRLTTAPVLTLPDAKEPFVVYCDASKIGLGGVLMQGGKVVAYALRQLKTHERNYPTHDLELAAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6U2</accession>
    <name>A0A392V6U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011048988">
        <property type="protein sequence ID" value="MCI82671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6320" checksum="1A033558E71998B3" modified="2018-12-05" version="1" fragment="single">RCRHAPPCHREPPPELSISAGTLSSSPELSLYLNRASASDFCLPPANLLSLGHSLTLTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V798</accession>
    <name>A0A392V798_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011049826">
        <property type="protein sequence ID" value="MCI82705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V798"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2535" checksum="B6B8C51C0808712F" modified="2018-12-05" version="1" fragment="single">QVGYDYWRAGRLMRHDAYYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9N3</accession>
    <name>A0A392V9N3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011104011">
        <property type="protein sequence ID" value="MCI84984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9N3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6909" checksum="75E44161FB2E34B3" modified="2018-12-05" version="1" fragment="single">MEERLFQLEKDMVDVCSGLVLGVRRAESEGDCWKWREESYTVKDDYHLLIEGGRRMRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBG3</accession>
    <name>A0A392VBG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011120446">
        <property type="protein sequence ID" value="MCI85644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6976" checksum="90B322573330E44F" modified="2018-12-05" version="1" fragment="single">MAEELPQPSTSNPRPDYSWIADEARDTVSVYAECWDDIPAEMFTDISSAEDWEIRIPGLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VE51</accession>
    <name>A0A392VE51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118609">
        <property type="protein sequence ID" value="MCI85559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VE51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7844" checksum="AF43086330F6F52B" modified="2018-12-05" version="1" fragment="single">ARREGVNVDRIPRRSKGKGVVASTTEGEAQHEPRDECEPEHELEAQHVDEHELEVKHELEDELELEHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF28</accession>
    <name>A0A392VF28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011154952">
        <property type="protein sequence ID" value="MCI86998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6349" checksum="9049ADEB73B0EA2F" modified="2018-12-05" version="1" fragment="single">MANSMPEIQNTVKASQDAMLSIMEKHMGKRTGEVEAISSEPKEGLTNATPLKGSTSVATN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGV6</accession>
    <name>A0A392VGV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serpin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011146509">
        <property type="protein sequence ID" value="MCI86652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7792" checksum="09FC48364A8AB478" modified="2018-12-05" version="1" fragment="single">TMAVAVTAQTHAKAQRDVEKHEREIIVAGSRVLTSFNNQTPPMFNGEGGPDTADLWLQAMERIFGAIHCPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VP47</accession>
    <name>A0A392VP47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011236531">
        <property type="protein sequence ID" value="MCI90154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VP47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4432" checksum="8B3900A5B994E97E" modified="2018-12-05" version="1" fragment="single">MGELMLCTDGEQVLFNIFEAMKLHDDDPKCFRIEVVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQ36</accession>
    <name>A0A392VQ36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011221763">
        <property type="protein sequence ID" value="MCI89529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQ36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3049" checksum="4E403A8A13E01D46" modified="2018-12-05" version="1" fragment="single">GMSAEREYIRDGKVTKMVLIELTDHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQY3</accession>
    <name>A0A392VQY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011210972">
        <property type="protein sequence ID" value="MCI89115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4266" checksum="1CE5D2CA2C3CDB1A" modified="2018-12-05" version="1" fragment="single">GSGRVVQWFEVGRDSGRVSTRGAWRSDCECELHSRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVY8</accession>
    <name>A0A392VVY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011256005">
        <property type="protein sequence ID" value="MCI90855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="8321" checksum="42EBA15F5BF7F9E6" modified="2018-12-05" version="1" fragment="single">PNVYYNAQGALYSEAMSYRQQFPPPPFYPRFPSPEAWTEYRRADEIEYEAIMNRNEAVFYEQYEAHMKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXE2</accession>
    <name>A0A392VXE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011317867">
        <property type="protein sequence ID" value="MCI93034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7768" checksum="1FC7F6A4EA30A309" modified="2018-12-05" version="1" fragment="single">SWRLPIDKLIWHWERDGNFSVRSAHHMIKQADTMNIPEASSSNNHEIWKAVWKIKAPQSVKNFLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZ03</accession>
    <name>A0A392VZ03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011308503">
        <property type="protein sequence ID" value="MCI92719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZ03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2208" checksum="1BEF4190498981D3" modified="2018-12-05" version="1" fragment="single">INGRGYKGGGGGGARWGSEGEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1P2</accession>
    <name>A0A392W1P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha/beta hydrolase domain-containing protein 17-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011360532">
        <property type="protein sequence ID" value="MCI94584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1P2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3095" checksum="8FC1BDC9A277CF2B" modified="2018-12-05" version="1" fragment="single">MGAVTSSMAAKFVFFPPNPSSYGIGVDKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1Q9</accession>
    <name>A0A392W1Q9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011334018">
        <property type="protein sequence ID" value="MCI93622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1Q9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5703" checksum="ADA0AF3427EC8612" modified="2018-12-05" version="1" fragment="single">AFVSNTNEDDVESNLDTDESSSDVNVLLMKALQQRSQVYGWKTQTNCCSKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3D0</accession>
    <name>A0A392W3D0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011351156">
        <property type="protein sequence ID" value="MCI94243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4547" checksum="9C5D8CC42AA209B9" modified="2018-12-05" version="1" fragment="single">SEAGRLQRLKASEAENIRTSENVPEAEHVSELGLSEPIRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3G4</accession>
    <name>A0A392W3G4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011368255">
        <property type="protein sequence ID" value="MCI94847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3G4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7126" checksum="61513FF15AE33216" modified="2018-12-05" version="1" fragment="single">EQALQHLKKALFEPPVLSRPTNEEVLYLYLVVASEAISAALIRETTKGQKPVYFTSKALQGPEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3W4</accession>
    <name>A0A392W3W4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transposable element protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011383416">
        <property type="protein sequence ID" value="MCI95318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3W4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5002" checksum="DBEC054050234499" modified="2018-12-05" version="1" fragment="single">MATHSKMLETQISQVAQQLAATAAPAGNFPGQSQPNPKGHVNAIMLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3X0</accession>
    <name>A0A392W3X0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium ion binding protein SUB1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011356620">
        <property type="protein sequence ID" value="MCI94459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3X0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="6966" checksum="8F3359F4E05C38BB" modified="2018-12-05" version="1" fragment="single">SVIKTGEDITPSPQDSPLPSSAADATPAVTEAVIEKSEEKIINSSVAPGPISSDCQELLGTLNCSDPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W437</accession>
    <name>A0A392W437_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011343425">
        <property type="protein sequence ID" value="MCI93961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W437"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5718" checksum="484884D61EC9CCB3" modified="2018-12-05" version="1" fragment="single">TTEDDLHVFFDCSATRECWQATGLLSVLDNNVYQQGLAAYRVFAMCRNED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W482</accession>
    <name>A0A392W482_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011387492">
        <property type="protein sequence ID" value="MCI95464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W482"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4894" checksum="37012B957C0DC6A7" modified="2018-12-05" version="1" fragment="single">WKDWCIVNDIKALFDSTIEMFDLSNNRNNMDLFLGSLMRIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6D2</accession>
    <name>A0A392W6D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011408004">
        <property type="protein sequence ID" value="MCI96194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6777" checksum="FEB73994522ED7F4" modified="2018-12-05" version="1" fragment="single">DVEDPGNSLGAGLHKLTPGVPAARFVLPPAFSHGTLCDGETQIALPAADEAILADMGPEAIRGEIAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7S0</accession>
    <name>A0A392W7S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011412621">
        <property type="protein sequence ID" value="MCI96356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4446" checksum="C6051D5F470DC292" modified="2018-12-05" version="1" fragment="single">AATDGSEAMKMNHLEFAIEKMKSELKSAVISEESRKTCFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8K3</accession>
    <name>A0A392W8K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011422448">
        <property type="protein sequence ID" value="MCI96727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6869" checksum="22AC62F945C2469B" modified="2018-12-05" version="1" fragment="single">MYDPVEKGDTKPYKVTDEDWKKLHRKAVSLSRQWVDLGVFHHVATETNAQTLWKNIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WF69</accession>
    <name>A0A392WF69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011436209">
        <property type="protein sequence ID" value="MCI97215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WF69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4445" checksum="983BEEBEB483E20D" modified="2018-12-05" version="1" fragment="single">SMAQNEGGDGGNGNNAGGGGGHDGNKKSQSKDVKQEQQPVAHPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYQ4</accession>
    <name>A0A392MYQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021231">
        <property type="protein sequence ID" value="MCH91818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13650" checksum="6CD576DA4248A2E1" modified="2018-12-05" version="1">MEQPEAFVEDNFKVCLLKKSLYGLKQSPRQWYHQFYEFLLXIGFVRSGYDSCVYMLKRDRKFILHRLLYVDDFLMVSPSKEEINMLKEKLNGEFEIKDLGVTKRILGMDIVRDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5C8</accession>
    <name>A0A392N5C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028164">
        <property type="protein sequence ID" value="MCH94793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10050" checksum="9A38A7DB8C7CAE81" modified="2018-12-05" version="1">MSATNNRSPASFRRHHLAKQPPPAAVTEQGPTKSNTDHPALKMEGRIRSSARIVTTPKGSRETANQVRTADNEGVAIGDSNEAAVVDSDGWDGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF43</accession>
    <name>A0A392NF43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035865">
        <property type="protein sequence ID" value="MCH97765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717:SF10">
        <property type="entry name" value="OS10G0501000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717">
        <property type="entry name" value="OS12G0527900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="252" mass="28809" checksum="92288CDAA35094B7" modified="2018-12-05" version="1" fragment="single">ISEWMSNERNLHLLPGDIAIRLDLISKVRGLDQAEKYFNSIPHTSKDFKVYGALLNCYAQYNSVTKAESIMKQVKKCASNHAPDLVLSYNVLLKLYTRTGQHKKLVALMKEMKYKKMYNSYTFTSWLNAYASTNNIDEMEKLXXXXXXXXXXTLDWLVYSAAADGYIKACQFDKSFAMLKKSEQLIKGNSKKSAYASLLTKYAAIGKKEDVYRIWNICKNLNGSRNSIYISMLISLSKLNDIDGAETILEEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJQ2</accession>
    <name>A0A392NJQ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="19">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010040758">
        <property type="protein sequence ID" value="MCH99603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000059">
        <property type="entry name" value="S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000621">
        <property type="entry name" value="Serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47974:SF6">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47974">
        <property type="entry name" value="OS07G0415500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 18 19" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 21" id="KW-0418">Kinase</keyword>
    <keyword evidence="21" id="KW-0430">Lectin</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 18 19" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 21" id="KW-0675">Receptor</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 19" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="20">
        <location>
            <begin position="16"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="21">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH99603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="336" mass="38239" checksum="B4EAB6F3F4659504" modified="2018-12-05" version="1" fragment="single">GGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSKKGSXEXESDISHDTSSDPSILEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKTHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKM6</accession>
    <name>A0A392NKM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ultraviolet-B receptor UVR8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040907">
        <property type="protein sequence ID" value="MCH99645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="entry name" value="Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051210">
        <property type="entry name" value="Ub_ligase/GEF_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870:SF466">
        <property type="entry name" value="ANKYRIN REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870">
        <property type="entry name" value="REGULATOR OF CHROMOSOME CONDENSATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00415">
        <property type="entry name" value="RCC1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00633">
        <property type="entry name" value="RCCNDNSATION"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00626">
        <property type="entry name" value="RCC1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="7"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="59"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH99645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13624" checksum="8E1AEE9A30BD5D27" modified="2018-12-05" version="1" fragment="single">MALTSTGQLFGWGWNKFGQVGIGHNFDCSSPMLVNFPRAQKVVQISCGWRHTIAVTDRANVYSWGRGANGQLGHGDNLDRNVPKIIDAFSVDGCSEQHIKSSKYPSSGKPLASLSERYAVVPNET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLR6</accession>
    <name>A0A392NLR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044360">
        <property type="protein sequence ID" value="MCI00828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6381" checksum="82CCA83C78562470" modified="2018-12-05" version="1" fragment="single">MEELSNALERKKKREKKILAKRRAKDKARKATGMQMDAVEDGYVDHELFSLASMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPW8</accession>
    <name>A0A392NPW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Prefoldin subunit 3</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047345">
        <property type="protein sequence ID" value="MCI01853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4788" checksum="5274D9ACDCBBF43A" modified="2018-12-05" version="1" fragment="single">MASSSSSSAVTERRGIPGAQFVEDVQTYLNQLGLDVNSALAFLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQK5</accession>
    <name>A0A392NQK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BEL1-like homeodomain protein 9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046093">
        <property type="protein sequence ID" value="MCI01419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006563">
        <property type="entry name" value="POX_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07526">
        <property type="entry name" value="POX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0371">Homeobox</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POX" evidence="1">
        <location>
            <begin position="133"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24245" checksum="84B9F4FDB3BFF7FE" modified="2018-12-05" version="1">MMHHQPQLHYGSFPHSPQQKQQYYSELISDFGNCRNRTVQPHQVIVTDWFLNAETNSLASNVSKNKAYNNVSQFDQEGTSTSRDEFQTMKYVKPSIISRDCGKSLQDLVVGMIPNSKISTVGPLGPFTGYATVLKNSRFLKIAQNLLDEFCSKFVTTYDVLETDVASKGSNYSCSSSSMFHSADWGVRSNFGVSMRPDYQQIKAKLMCMQDEVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSY5</accession>
    <name>A0A392NSY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoinositide phosphatase SAC7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048794">
        <property type="protein sequence ID" value="MCI02330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5801" checksum="BB533D8C6C6386E6" modified="2018-12-05" version="1" fragment="single">DAIDLLQGHYIVSVGRDSAPSSQKGGIEAIAVYRNLVLAXPRSGGMQWATWMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NX51</accession>
    <name>A0A392NX51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cullin-3A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cullin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055219">
        <property type="protein sequence ID" value="MCI04383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NX51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.130">
        <property type="entry name" value="Cullin, Chain C, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045093">
        <property type="entry name" value="Cullin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059120">
        <property type="entry name" value="Cullin-like_AB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016158">
        <property type="entry name" value="Cullin_homology"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036317">
        <property type="entry name" value="Cullin_homology_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019559">
        <property type="entry name" value="Cullin_neddylation_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11932">
        <property type="entry name" value="CULLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26557">
        <property type="entry name" value="Cullin_AB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10557">
        <property type="entry name" value="Cullin_Nedd8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00884">
        <property type="entry name" value="Cullin_Nedd8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75632">
        <property type="entry name" value="Cullin homology domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50069">
        <property type="entry name" value="CULLIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cullin family profile" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17817" checksum="CCDBCD6F81BAA907" modified="2018-12-05" version="1" fragment="single">MGTADLKATFGKGQRHELNVSTYQMCVLMLFNNADSLSYKEIEQVTEIPSSDLKRCLQSLSLVKGRNVLRKEPISKDVSEDDEFFVNDKFSSKLYKVKIGTVVAQKKAEPKTLETQKRLEEDWKPQIDAAILRIMKSRKQLDHNNLIAEVAKQLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0T6</accession>
    <name>A0A392P0T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058378">
        <property type="protein sequence ID" value="MCI05342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P0T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="267" mass="29495" checksum="0489BEFB6DC30659" modified="2018-12-05" version="1" fragment="single">EGEIVALEIEDSDEEEEVEAECKLIGVLGKMGEYNTMKLEGKLKDVDVEVLIDSGASHSFISPELTTALGLTVTPTVVKRIKLGDGHRVLSEGICKGIKIKLGSRTFEVDALVLGLGGLDVVLGVSWLSTLGKVVMDWKDLTMQFYHNGEIVTLKGGSQLQQECLNSFLGGKESKGSYDGWWSQLEHKQEPNGVIQENIAEVLKAYPEVFTEKLALPPERVQVHRINLLPNHGPVNVRPYKYPHHQKAEIEKQVADLLQAGVIRPKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2Y5</accession>
    <name>A0A392P2Y5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTPase Der-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059689">
        <property type="protein sequence ID" value="MCI05769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2Y5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01894">
        <property type="entry name" value="EngA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43834">
        <property type="entry name" value="GTPASE DER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43834:SF6">
        <property type="entry name" value="GTPASE DER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="1">
        <location>
            <begin position="50"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="24901" checksum="676FC926878497F6" modified="2018-12-05" version="1" fragment="single">MSNYNLFLLWCTRHTRSFSNRGFCTNSSSKNPPPPKLLDFTKIEISRLPTVIILGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGVAKLGHLRFRVLDSAGLEAEATSGSILHRTASFTANVLSNSHSLLFLTDGRAGLHPLDQEVGKWLRRNAPQIKPILVMNKSESLFDADDSLASAANEMSRLGFGDPIAISAETGLGMHDLFLSLKPVLEDYML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4Q1</accession>
    <name>A0A392P4Q1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063941">
        <property type="protein sequence ID" value="MCI07041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8326" checksum="89E9A24249B937A5" modified="2018-12-05" version="1" fragment="single">NEFWVRLGLDSRLSSQIWACSPSDRKARRARIMQARRARGNLAERGSSPSLARNLKTFCIFFAXARCSSPGEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7D7</accession>
    <name>A0A392P7D7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase family AAA domain-containing protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067368">
        <property type="protein sequence ID" value="MCI07988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007005">
        <property type="term" value="P:mitochondrion organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23075:SF13">
        <property type="entry name" value="AAA-TYPE ATPASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23075">
        <property type="entry name" value="PUTATIVE ATP-ASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="2">
        <location>
            <begin position="3"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17263" checksum="2DE8E9DA1468F272" modified="2018-12-05" version="1" fragment="single">MSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPVPGEEERLKLLNLYLNKYLRDESNNSKGGLFLKKQPQKITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCSLDSKLFKEIVDYKVVEHHQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P860</accession>
    <name>A0A392P860_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">G-type lectin S-receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066207">
        <property type="protein sequence ID" value="MCI07659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P860"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048544">
        <property type="term" value="P:recognition of pollen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000858">
        <property type="entry name" value="S_locus_glycoprot_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444">
        <property type="entry name" value="BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444:SF198">
        <property type="entry name" value="BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00954">
        <property type="entry name" value="S_locus_glycop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S-locus glycoprotein" evidence="3">
        <location>
            <begin position="2"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI07659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12861" checksum="84CB2FAE3C23D631" modified="2018-12-05" version="1">MRWDDEKKEMQVTWTTRESECDVYDTCGEFASCSSLSSPICSCLKGFEPRNIEEWNIHNWTGGCVRRIPLQCETLNNKTTSTKEDGFLKLQMVKVPDFAEGLAVAPDICRSLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAU5</accession>
    <name>A0A392PAU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tel2-interacting protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067475">
        <property type="protein sequence ID" value="MCI08015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052587">
        <property type="entry name" value="TELO2-interacting_protein_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18460">
        <property type="entry name" value="TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18460:SF3">
        <property type="entry name" value="TELO2-INTERACTING PROTEIN 1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11472" checksum="8DDDA2CE191226CF" modified="2018-12-05" version="1">MVVILKKLTYGALLSPSEASEEFREGILLCFRALLLNLNSCSDASCSCKHIPGLPALSDNVYNHKLHNNFKYDSESEECLLAFLRSQTASAAVGHWISLLLKVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGK3</accession>
    <name>A0A392PGK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Signal peptide peptidase-like 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078132">
        <property type="protein sequence ID" value="MCI10912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098554">
        <property type="term" value="C:cytoplasmic side of endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030660">
        <property type="term" value="C:Golgi-associated vesicle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098553">
        <property type="term" value="C:lumenal side of endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042500">
        <property type="term" value="F:aspartic endopeptidase activity, intramembrane cleaving"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033619">
        <property type="term" value="P:membrane protein proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007369">
        <property type="entry name" value="Peptidase_A22B_SPP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12174">
        <property type="entry name" value="SIGNAL PEPTIDE PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12174:SF102">
        <property type="entry name" value="SIGNAL PEPTIDE PEPTIDASE-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04258">
        <property type="entry name" value="Peptidase_A22B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8058" checksum="3A931C8BCC14C9D6" modified="2018-12-05" version="1" fragment="single">MLSGTANLFGGSIIMIPFFGAVPYLTLAVTPFCXVFAVVWAVKRHASYAWIGQDILGIVLIITVLQIVRIPNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL36</accession>
    <name>A0A392PL36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084373">
        <property type="protein sequence ID" value="MCI12492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="9926" checksum="30BFD823E6342F08" modified="2018-12-05" version="1" fragment="single">TYNCDQQTLQAFLDEATVHGAFDHLTPVRWVEDAAHPDFGILADIHAHYVQTPQGQQAMAALNAYIPQNVDVHVAAQAEVPGQGAPPVEEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMX9</accession>
    <name>A0A392PMX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088296">
        <property type="protein sequence ID" value="MCI13451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10446" checksum="F238739980399E72" modified="2018-12-05" version="1" fragment="single">IVVIYCQTQQSFDVATDGSVLPLVSTILTINDDGNVPEKPTMDQPTNQQMLVASGGDDHEWAVVSRPPCMSGFDSKGDGMVDLEMNRVVTMKKTDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPD6</accession>
    <name>A0A392PPD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter G family member 8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088492">
        <property type="protein sequence ID" value="MCI13507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043926">
        <property type="entry name" value="ABCG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050352">
        <property type="entry name" value="ABCG_transporters"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041:SF27">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19055">
        <property type="entry name" value="ABC2_membrane_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="21"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter family G" evidence="8">
        <location>
            <begin position="105"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="167"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="190"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF19055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI13507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="22857" checksum="FC5172DFB1728AAA" modified="2018-12-05" version="1" fragment="single">MLTVSETFAFSASLLKPKTIDITSIVSSLLNELRLTHLANTRLNHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAYKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQAFLHSKGFTVPHQLNALEYAMEILNQLNEIKPMITPPTPPESPEQSSLEKSKSTLGCNSLSENIGTRTKNREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPQ4</accession>
    <name>A0A392PPQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">U-box domain-containing protein 35-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086030">
        <property type="protein sequence ID" value="MCI12895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="18439" checksum="6701843D22779A72" modified="2018-12-05" version="1" fragment="single">PSDMQIDESITDDTSEISFSSSSSSNYTSTTQTDSGSVASYAALHSSSLATQRFQALSNMNQNLLNTTPSLNETNHSRGQSIDLGRGNVATSSARNSDFDRGLSRASSFRSIVSDTDTWVYDQNSLKDAPLASKLASPNRQENFNLELEKLRIELRHVQGMHAVAQTEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYH2</accession>
    <name>A0A392PYH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102361">
        <property type="protein sequence ID" value="MCI16767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10969" checksum="B7D37395F2622C23" modified="2018-12-05" version="1" fragment="single">MREMQLHLETLSKQHETFQSFITTQLSTIITTTHPSSSSSSPTPSPFKPPKIHLPPFDGSNPLDWIFQADQYFDLAQISPTQRMQFLPFFMKGDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3J3</accession>
    <name>A0A392Q3J3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Fasciclin-like arabinogalactan protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May be a cell surface adhesion protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fasciclin-like AGP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112655">
        <property type="protein sequence ID" value="MCI18973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3J3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009834">
        <property type="term" value="P:plant-type secondary cell wall biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.180.10:FF:000009">
        <property type="entry name" value="Fasciclin-like arabinogalactan protein 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.180.10">
        <property type="entry name" value="FAS1 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036378">
        <property type="entry name" value="FAS1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045003">
        <property type="entry name" value="FLA_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32077:SF53">
        <property type="entry name" value="FASCICLIN DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32077">
        <property type="entry name" value="FASCICLIN-LIKE ARABINOGALACTAN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02469">
        <property type="entry name" value="Fasciclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00554">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82153">
        <property type="entry name" value="FAS1 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="FAS1" evidence="9">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="151"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="151"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="166"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI18973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="21153" checksum="0EC2F12852A9BFAD" modified="2018-12-05" version="1" fragment="single">MKTTQLINQLNSQLLTIKSGGLTILAPEDSAFSELKPGFLNTLSNEQKLELLQFHVVPDFVSSSNFDTLTNPVRTLAGNKPGKVELNVISYGGNVNISTGHVNTTISGIIYSDKHLAIYKVGKVLIPSEFFPTKKIVAEVPALAPAPAAIEDAKAPKADKEKPVSSEDSSSSQVVPTVTSSAMRIDMCGTLVALVGIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5A7</accession>
    <name>A0A392Q5A7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter C family member 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110153">
        <property type="protein sequence ID" value="MCI18435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5A7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF362">
        <property type="entry name" value="ABC TRANSPORTER C FAMILY MEMBER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="6"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI18435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14648" checksum="7DF3CFA63B1A4BAE" modified="2018-12-05" version="1" fragment="single">VQVCGTVAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKVLILSFSVLMFPPFGINFTVNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6A9</accession>
    <name>A0A392Q6A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114578">
        <property type="protein sequence ID" value="MCI19389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2485" checksum="490E4C0774B7074B" modified="2018-12-05" version="1" fragment="single">MFFAAIDPDKGEAEGYATPLQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q796</accession>
    <name>A0A392Q796_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116554">
        <property type="protein sequence ID" value="MCI19782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q796"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038920">
        <property type="entry name" value="At3g05675-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058039">
        <property type="entry name" value="At3g05675-like_ankyrin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060:SF33">
        <property type="entry name" value="OS04G0278000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060">
        <property type="entry name" value="OSJNBA0011J08.25 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25553">
        <property type="entry name" value="BTB-POZ_ANK-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="At3g05675-like ankyrin-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI19782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="19623" checksum="B3675E1CD53D3EB0" modified="2018-12-05" version="1" fragment="single">MIERISRQVDNINWLLEIMLDGQIAEDFVDIWSDQHQLLKMHDNASPMVRYELSRVSAILFVAMATRKLQCRLEARSGLLQAWFAPMLLDFGWLQRCRKGLDIKVLQEAMGQTLLTLPLKQQHTLFMEWFHHFSRHGTECPNLSKAFQIWWRRSFLRGSETYAIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGV8</accession>
    <name>A0A392QGV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134157">
        <property type="protein sequence ID" value="MCI23102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="124"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18761" checksum="567D050200C398DD" modified="2018-12-05" version="1" fragment="single">RDLNMRQRRWMEYLKDFDFDLKYHPGKANVVAGALSRKALYVSELMMHKYNLIENFRNLNLNMVDVGDGIVMNKLEISCDLRDINVQAQMNDPDLQRRVNNPEFSIAADGAILYSGRLCVPNDVELKHLILSEAHKSGFSIHPGSTKMYQDLKRNFWWPNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLX8</accession>
    <name>A0A392QLX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010144058">
        <property type="protein sequence ID" value="MCI24874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF79">
        <property type="entry name" value="OS06G0205337 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19819" checksum="D836A890CB1577AD" modified="2018-12-05" version="1" fragment="single">RSGGLSVMWKENTKCRVMNYSRNFINLVVEDREKGEWRLTCFYGYPDRSKRRQSWELLRELRDMSDLPWCIIGDFNDLLSQEDKKGLHPHPNWLCNGFRNAVSDCDLTDIRLDGYPFTWVKSXXXXXXIEERLDRAMANTDWLMLFPDVKLLNLIASHSDHSPILLQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNH5</accession>
    <name>A0A392QNH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein ENHANCED DISEASE RESISTANCE 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010147132">
        <property type="protein sequence ID" value="MCI25424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12653" checksum="6CCEC334BBC32821" modified="2018-12-05" version="1" fragment="single">MGLNDSDEFFDVPESTEYDHYDNQWHSDSEQLGVPQHKISSAAGLVKKLHDLAVQKKGYMDLQDATKEESESCSYGTTLQNDPNCTLPCTWAASDPSLFLVRGETYFQDQQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRB7</accession>
    <name>A0A392QRB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151708">
        <property type="protein sequence ID" value="MCI26180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989">
        <property type="entry name" value="OS01G0750732 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989:SF47">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE PBL28-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI26180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11924" checksum="0FC054C767159BD0" modified="2018-12-05" version="1" fragment="single">MLSSHVVGTPGYIAPENAYDIMPGRMSDVYSYGVVLLELITRKKLLVPSINDEANEIHIVTWSRALMMETGKIENIVDPYLVSEFPNSIALAKQVTAVLSLALQCTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRT4</accession>
    <name>A0A392QRT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154172">
        <property type="protein sequence ID" value="MCI26582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038920">
        <property type="entry name" value="At3g05675-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060:SF6">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060">
        <property type="entry name" value="OSJNBA0011J08.25 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="19620" checksum="A6BB68BB8087DF22" modified="2018-12-05" version="1" fragment="single">NLIPFLSEEESKELVARVSPVGEDACEEMLQGLISSAMNNYGNTAFVKAFVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVFRGDHNETEAIQRLNLHKASTIGKQLLWLVERMIELRVADAAVREWSEQEAFTGDLKRAFRDDAWRNIVPGLPAVILRCTSKLAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QW18</accession>
    <name>A0A392QW18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein IWS1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163072">
        <property type="protein sequence ID" value="MCI28024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QW18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4200" checksum="DD2486F088737DB4" modified="2018-12-05" version="1" fragment="single">YRDEDGEPLMDYDDAQSDREASPEPQQLDDIEEDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0R5</accession>
    <name>A0A392R0R5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010175347">
        <property type="protein sequence ID" value="MCI29839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0R5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8391" checksum="55F90465E2B6A577" modified="2018-12-05" version="1" fragment="single">SRKLVLELAPAWGATCSAWRAMHGRFGAVAPGAGARRSPSCVAHRFAVYILLFHFLQPPERESGEVFRAFHQQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5D7</accession>
    <name>A0A392R5D7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186233">
        <property type="protein sequence ID" value="MCI31314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="155" mass="17091" checksum="4657421DA73E1C99" modified="2018-12-05" version="1" fragment="single">PRPEPRQASNVEEEKPASGGQDLKQVAMCISRPEDFSVPEHLEDKYAAPIFSKWENFPETMVISGGGFNKITIGSVKRKFEELIDATSKQSATLDKPKKGPVPLSFYLKELPGGSANAQIPLLIRANMANFDVRRVLVDPGSSVDIMFAHCFQTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF61</accession>
    <name>A0A392RF61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010221274">
        <property type="protein sequence ID" value="MCI35211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3594" checksum="D721E653D0917134" modified="2018-12-05" version="1">MIVVMAGDGNDSGSRERSTQLQIRDEADSGGGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGF3</accession>
    <name>A0A392RGF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tyrosine-protein kinase Lyn</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010216063">
        <property type="protein sequence ID" value="MCI34665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7810" checksum="17895C500DA959B9" modified="2018-12-05" version="1">MLTEQFSELLQEKKLTVKDNEDSTADFLAGFFFSRSPYAKLLKCMGISVYVHSVSTGAITYCLDFSAGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJA8</accession>
    <name>A0A392RJA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division control-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010236331">
        <property type="protein sequence ID" value="MCI36683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="10647" checksum="4431A05D09BE6682" modified="2018-12-05" version="1" fragment="single">KIDMDVDSSCEAQATHITGVTLPDAPATEDENSKAVEGENIGSVIENSETAVDTSAAVEIKSIEENGEGQDVANPDEVMEGANKPDNIKEATLLDDMQVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRS0</accession>
    <name>A0A392RRS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010260840">
        <property type="protein sequence ID" value="MCI38867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11399" checksum="AF50CD50941F8D99" modified="2018-12-05" version="1" fragment="single">MFNVFEAMKRHDEEPECHRVDVVEEVVDDVFAEETYTPPLERVLVNSIDDLEEEWEREIELCLKHLDACRVDENPKVEEDLKVKPKEEPSSSVQEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RS90</accession>
    <name>A0A392RS90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010255819">
        <property type="protein sequence ID" value="MCI38426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RS90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7619" checksum="078FB2611FFDC6DA" modified="2018-12-05" version="1" fragment="single">MGDDNAKDQEISNVESPPKDNAILEITPEVEPVVEEVKDAGVNMPESTNPEILAVDPPNASKDKTSSSTNGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSM0</accession>
    <name>A0A392RSM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010264140">
        <property type="protein sequence ID" value="MCI39147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3972" checksum="0E89103D58F61317" modified="2018-12-05" version="1" fragment="single">MIPSSSLAQVLHFYGFALALALALFSHKFMRNEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVI1</accession>
    <name>A0A392RVI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010282301">
        <property type="protein sequence ID" value="MCI40651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6467" checksum="0F4D43AE65709BBB" modified="2018-12-05" version="1">MFVPNMESIEPEVTAVTRIFDQNGSMFTITNQAVVGEVDDGSRVDTQSLMTVDGGGEDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWU9</accession>
    <name>A0A392RWU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010282086">
        <property type="protein sequence ID" value="MCI40637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5640" checksum="FE1BADDF26C3F758" modified="2018-12-05" version="1" fragment="single">MLVDTGGLWFRVLVAHYGLERGQLREGGRRGSSWWREIARIREKVDGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYR9</accession>
    <name>A0A392RYR9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295967">
        <property type="protein sequence ID" value="MCI41763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="15"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10216" checksum="E263E439982D0B3D" modified="2018-12-05" version="1" fragment="single">MGCSEESKTTLGSYVLREETNHWWKNAKQRIGVGGIAITWEMFKREFFMKYFPADVKNKKVVEFMELKQGNMSVAEYAAKFESLCAFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2J5</accession>
    <name>A0A392S2J5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010307227">
        <property type="protein sequence ID" value="MCI42652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2J5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10033" checksum="AD0009EFE94D813F" modified="2018-12-05" version="1" fragment="single">GKIMEHHSVLLIRITPVVLLYHRAVFLFSKTKYRTNNIRIPLPKIANSNHAVEVHPPVSLNNLSHLWVTGDAREVYAPLLNNTLATDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S495</accession>
    <name>A0A392S495_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CTC-interacting domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010321294">
        <property type="protein sequence ID" value="MCI43723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S495"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010494">
        <property type="term" value="C:cytoplasmic stress granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034063">
        <property type="term" value="P:stress granule assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045117">
        <property type="entry name" value="ATXN2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12854">
        <property type="entry name" value="ATAXIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12854:SF7">
        <property type="entry name" value="ATAXIN-2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4904" checksum="2BFBFD6EF357AC41" modified="2018-12-05" version="1" fragment="single">MVDSVISQPRHVETGRELHRWVPDEDVPQCPELDNIFDGSWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4T2</accession>
    <name>A0A392S4T2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010322870">
        <property type="protein sequence ID" value="MCI43858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4T2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008528">
        <property type="entry name" value="unc-13_homologue"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31280:SF16">
        <property type="entry name" value="GLS PROTEIN (DUF810)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31280">
        <property type="entry name" value="PROTEIN UNC-13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11693" checksum="E8F93004131DC31A" modified="2018-12-05" version="1" fragment="single">YEILLAACRSSGPKPLTFISQSERGIRDPAPAVSLHRSRTSLAASKVKKALGLKTTSLKSKRAVTTGELVRVQMKISEQSESRIRRALLRIAAAQVSILFFPSFYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6U2</accession>
    <name>A0A392S6U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010326632">
        <property type="protein sequence ID" value="MCI44142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12371" checksum="3193ACFED4413E64" modified="2018-12-05" version="1" fragment="single">LRNNDGQWVEDDVALRELVTKYYKDLFTETNDRNIIFSMKYGFKPLEAEVASNLDREVGNDEIKEALFDMGAWKAPGPDGYPAGFYQKNWSIVDTKLNEFVRQVWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDB1</accession>
    <name>A0A392SDB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010364658">
        <property type="protein sequence ID" value="MCI46923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6890" checksum="A636A9AE406E7096" modified="2018-12-05" version="1" fragment="single">MSPLPWCVIGDFNDLLSQDDKRGLNPHLNWLCAGFRSAVNDCDLTDIQLEGYSYTWIKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDI2</accession>
    <name>A0A392SDI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010351530">
        <property type="protein sequence ID" value="MCI46000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12389" checksum="D83DFC6EABA8B547" modified="2018-12-05" version="1" fragment="single">VRNMKVVEFLELKQGNMTVAEYAAKFESLSVFSPYYNTSEAEYDKCVKFESGSRPEVKHLIGFSEIRDFLTLVNKSRICDEDGRAKSNYYKAVNENKRKGQDRGKPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SE30</accession>
    <name>A0A392SE30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010360774">
        <property type="protein sequence ID" value="MCI46667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SE30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF18">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10337" checksum="8F67D54BFBEFFD6A" modified="2018-12-05" version="1" fragment="single">MDFVGGLPKTKKGNEVIWVVVDRLTKCAHFIAIKKGTLVPKLAEIYVEHIVKLHGIPSSIISDRYPRFTSRFWESLQEALGTKLRLSSAYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SG86</accession>
    <name>A0A392SG86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010372207">
        <property type="protein sequence ID" value="MCI47417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SG86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9915" checksum="811A57A545DBA62A" modified="2018-12-05" version="1" fragment="single">MDKERGFVTRPPLLDGSNYDYWKSCMIAFVKSIDSRTWKAVLKGWDHPKIKDANGVDTAELKPEEKWSTVEDALVLGNSKALNALFNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJ20</accession>
    <name>A0A392SJ20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010379018">
        <property type="protein sequence ID" value="MCI47920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJ20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8629" checksum="899779E622204C71" modified="2018-12-05" version="1" fragment="single">EKASLEAEVKKVQDVCDFYLENHPNGYCIPEGVSEEEQAKFMGRPNPYAGWKDQNPRWNQSQQAQQPRKPSGYNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SK26</accession>
    <name>A0A392SK26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phytoalexin-deficient 4-2 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010397755">
        <property type="protein sequence ID" value="MCI49213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SK26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8811" checksum="4C2F288B7E8E5739" modified="2018-12-05" version="1" fragment="single">MSKPAKFISEGGSSNRPPLFQGDDYYYWKDKMELFLRSQDNNMWPVVETREYTPLVKDSTTPKTQAEWTTTKADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNX7</accession>
    <name>A0A392SNX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010404028">
        <property type="protein sequence ID" value="MCI49630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3186" checksum="A25EDFFF7DC7BA5B" modified="2018-12-05" version="1">MAVVSMAGLAAEGLTYDKVVGQSADLFTLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ11</accession>
    <name>A0A392SQ11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010411699">
        <property type="protein sequence ID" value="MCI50125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3463" checksum="FA4A8E19C965E6F3" modified="2018-12-05" version="1" fragment="single">AMLLDSSYGDSDKNSLAMVPVKNFIVEQENF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQR1</accession>
    <name>A0A392SQR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010418206">
        <property type="protein sequence ID" value="MCI50554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="5219" checksum="AB0FAAFF2F2CADE0" modified="2018-12-05" version="1" fragment="single">MEWWWWLAVLTWWWVLVLFWGGGGGWRILFESLMIFKSVEIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STA6</accession>
    <name>A0A392STA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010442027">
        <property type="protein sequence ID" value="MCI52088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3380" checksum="B66FCC4085EB6749" modified="2018-12-05" version="1" fragment="single">SPPDLQNMMARTMAIAPIIAASINECLGSTMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1R3</accession>
    <name>A0A392T1R3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010490292">
        <property type="protein sequence ID" value="MCI55081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1R3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8420" checksum="A681C754F796658B" modified="2018-12-05" version="1" fragment="single">SVPWKDALVIKLLGKKLGYNMLSPARRADACCATRSAFVLRQNFFWFLRGAQRGLARPAALPCISNFSSGVYAKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T488</accession>
    <name>A0A392T488_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010492260">
        <property type="protein sequence ID" value="MCI55197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T488"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10032" checksum="CD7843549B3B8096" modified="2018-12-05" version="1" fragment="single">ILGRPTLAALGAVPSMIHLKMKYHNDEDEVVTIEANMVGAKRCHQGMQKATNTTAGGRNDKSTSVNTPTVKENGKQPNEVAPMEIIPNKKHNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5E8</accession>
    <name>A0A392T5E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Laccase-11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multicopper oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010495622">
        <property type="protein sequence ID" value="MCI55396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF116">
        <property type="entry name" value="LACCASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0186">Copper</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="8">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI55396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6499" checksum="3B650A1C21A4F044" modified="2018-12-05" version="1" fragment="single">VPTGGWTAIRFQADNPGVWFMHCHLELHTGWGLKTAFLVENGPEQSQSVLPPPKDLPSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7C6</accession>
    <name>A0A392T7C6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010521400">
        <property type="protein sequence ID" value="MCI56968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9757" checksum="7C69A6469A2A39D3" modified="2018-12-05" version="1" fragment="single">IKLIMESEDIDLGFLLQQDIKRIASCEAAAFTLGHCNLITALCRFNKVPEEGEADGELEPIKGLDVKYYRSRFKSGPVNNNQGDNVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7V1</accession>
    <name>A0A392T7V1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010523551">
        <property type="protein sequence ID" value="MCI57109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7V1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9007" checksum="B8CC962F839F4719" modified="2018-12-05" version="1" fragment="single">LGRPWIHEAGAVPSTLHQNLKFVKNGKVVTVKGEQALLVSQLSSSTTIEVDDADGLNFQGLSLDDKNDKKKETVMSSLKDAQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB25</accession>
    <name>A0A392TB25_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010532529">
        <property type="protein sequence ID" value="MCI57637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="38" mass="3790" checksum="82C4CCB7F038D782" modified="2018-12-05" version="1" fragment="single">IIFVDGASNATGAGAGIILETGNSNLIEVSLALSFPRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBB4</accession>
    <name>A0A392TBB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Receptor-like protein kinase feronia-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010544377">
        <property type="protein sequence ID" value="MCI58328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8039" checksum="EF52266E8029F815" modified="2018-12-05" version="1" fragment="single">MGDVLWNLEFALQLQESAEESGNGFGGICGEEEPLFVDSKGKKELDAGYDGNVTDSKSSGMSMSIGGRSLASEDSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCB2</accession>
    <name>A0A392TCB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">12-oxophytodienoate reductase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010547901">
        <property type="protein sequence ID" value="MCI58532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045247">
        <property type="entry name" value="Oye-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893:SF62">
        <property type="entry name" value="12-OXOPHYTODIENOATE REDUCTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893">
        <property type="entry name" value="NADH OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0288">FMN</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH:flavin oxidoreductase/NADH oxidase N-terminal" evidence="6">
        <location>
            <begin position="3"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI58532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9644" checksum="66C2053AA2A1DA48" modified="2018-12-05" version="1" fragment="single">LIAGFDGVEIHGANGYLLDQFLKDKVNGRDDEYGGSLENRCRFALDVVKAVVDEIGADKVGVRLSPFADYCGCGDSNPQALAIYMAQSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TD73</accession>
    <name>A0A392TD73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010554601">
        <property type="protein sequence ID" value="MCI58958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TD73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8122" checksum="74CD5FD4D3E4B1B0" modified="2018-12-05" version="1">MWDFLTLRTRVDKIGTFRDHIVGTVRFLISNILSSDSVNSNRTCFSAVQIRRPPGSFYGVTNIVAMVATVTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TID0</accession>
    <name>A0A392TID0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010577219">
        <property type="protein sequence ID" value="MCI60197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TID0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9196" checksum="545FBD21789C2064" modified="2018-12-05" version="1" fragment="single">MRTSRAKIDVYAGRLSMAFGQHVIHFNLFDAMKHPHEEHSVFALDLIDDLIDDECADQFIVDFPSIAGFNDTYTCQSCTNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL87</accession>
    <name>A0A392TL87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010586374">
        <property type="protein sequence ID" value="MCI60695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7959" checksum="100C2FF784F9A4AE" modified="2018-12-05" version="1">MTSRVMENESNLVANHFATFVDLKALSINLEASVLLSRFKHFHGPVWKDFLDNKGTGPTGLEFIRKQLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL91</accession>
    <name>A0A392TL91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">EFR3-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010595473">
        <property type="protein sequence ID" value="MCI61207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4593" checksum="8489AD47E9593A2F" modified="2018-12-05" version="1" fragment="single">VVSVVLENYGEIKQDCQYGNNSRLYSWKMVVSAKGELNVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TS13</accession>
    <name>A0A392TS13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010623025">
        <property type="protein sequence ID" value="MCI62665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TS13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6663" checksum="DAD89F3EF833BAA7" modified="2018-12-05" version="1" fragment="single">MRVVVVEEEEAMEIVSSVDYRVIVSLNAQVKWVNVLSVETLDIRRMSARNRPFASIAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUV8</accession>
    <name>A0A392TUV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010666936">
        <property type="protein sequence ID" value="MCI64971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4846" checksum="4B40D22B1CACCB07" modified="2018-12-05" version="1">MPEFVLPKSCGKIPERIRVNSANTTGAQDTKPKVAFNARKQSKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UA77</accession>
    <name>A0A392UA77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060159">
        <property type="protein sequence ID" value="MCI05915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010775420">
        <property type="protein sequence ID" value="MCI70411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UA77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5744" checksum="411FB89F2A6748E6" modified="2018-12-05" version="1" fragment="single">MKAALEKVEKDLGELKTSHAEEKKKFEEEIRDMKSTIAPAADEPESARNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBW4</accession>
    <name>A0A392UBW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010773827">
        <property type="protein sequence ID" value="MCI70337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5218" checksum="C7442B26C7910075" modified="2018-12-05" version="1" fragment="single">MEQFEVSTMDSKREIEGLSGDNLELWEVMMEAILMFGMMGKTWSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDV3</accession>
    <name>A0A392UDV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010779022">
        <property type="protein sequence ID" value="MCI70596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8816" checksum="DD02DEDFAF497DF6" modified="2018-12-05" version="1" fragment="single">SMKTISEEQLQAFILKAREKKNRSQATAVSDPSSQLVVDDPTSKGSKRKNQEETTRISVEVPKKGEDATAEGDTTDALPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGS7</accession>
    <name>A0A392UGS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010800465">
        <property type="protein sequence ID" value="MCI71636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5486" checksum="223BBBA0C0451C29" modified="2018-12-05" version="1" fragment="single">MARNAAAAATPPAPLPQDPSQQPGNVYYVHPSESLQLSLVDAIHEACSWRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI01</accession>
    <name>A0A392UI01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832959">
        <property type="protein sequence ID" value="MCI73191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3195" checksum="77D59D090DDFEF86" modified="2018-12-05" version="1" fragment="single">DCIFSKLDWLIFTNWLNASSKGDGFRGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIF0</accession>
    <name>A0A392UIF0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">O-acyltransferase WSD1</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010837477">
        <property type="protein sequence ID" value="MCI73393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="44" mass="5049" checksum="DE348122FD72D0AB" modified="2018-12-05" version="1" fragment="single">SLQAQSTDRWQWQPDPDHGYSIRGAYHILTSQDSVTLDASQYLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMU5</accession>
    <name>A0A392UMU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaJ-like subfamily C member 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010871929">
        <property type="protein sequence ID" value="MCI74963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8188" checksum="620D6E4FFF0AA2EE" modified="2018-12-05" version="1" fragment="single">PATTESQPYEKPTKPFIAVTDAISSIFFALAIFVFQSKPYKSILFWFALSLLIGPFAPSSITGGDFRVGRGILLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UNG0</accession>
    <name>A0A392UNG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010875360">
        <property type="protein sequence ID" value="MCI75111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UNG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7622" checksum="0D1D2CB3C232E143" modified="2018-12-05" version="1" fragment="single">MKRGTSKVYAQEKKKKSEKETSTSKQSKTQRKLKFKQEVSSDSGKIDSDWAEFLEAYDPNKEDTDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXL5</accession>
    <name>A0A392UXL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PIF1-like helicase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010974000">
        <property type="protein sequence ID" value="MCI79455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI79455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6655" checksum="75BF73AF1D716995" modified="2018-12-05" version="1" fragment="single">MHLTQLTRKNQAFVWDKKCEESFQELKRRLTTAPVLVLPNAKEPFEVYCDASKMGLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZP0</accession>
    <name>A0A392UZP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011020311">
        <property type="protein sequence ID" value="MCI81488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3400" checksum="0226D3C6F988F4EA" modified="2018-12-05" version="1" fragment="single">EDRVVSEARARVVFEAYVLSRSGKICESSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAT0</accession>
    <name>A0A392VAT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011110814">
        <property type="protein sequence ID" value="MCI85247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4216" checksum="5C4593393CE8C7FF" modified="2018-12-05" version="1" fragment="single">LTTVFQAVERLNQLSICFSLAALLVVFGLLLALGLALQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBA5</accession>
    <name>A0A392VBA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011115095">
        <property type="protein sequence ID" value="MCI85427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3725" checksum="503AE6B9127821AE" modified="2018-12-05" version="1" fragment="single">DEVEYRLRSSIITTASPGSPSSSRSPLALYLRGTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VDK8</accession>
    <name>A0A392VDK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118677">
        <property type="protein sequence ID" value="MCI85562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VDK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3029" checksum="9EB7C47ED718D6F0" modified="2018-12-05" version="1" fragment="single">MSASLSASEKSEMNDKAVSTIILCLRDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF29</accession>
    <name>A0A392VF29_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011131005">
        <property type="protein sequence ID" value="MCI86063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI86063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6562" checksum="90B1476389F325C1" modified="2018-12-05" version="1" fragment="single">DKKKGQDRAKPYENKGNGSGKGKQGNGQCFKCGSRGHISYDFPLKDDKCFNCGKLGHKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFK7</accession>
    <name>A0A392VFK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011146786">
        <property type="protein sequence ID" value="MCI86667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6940" checksum="C96C1CBED6550447" modified="2018-12-05" version="1" fragment="single">MFTDISSSKDWEIRIPEASRRICTAWGWGTIHMYEIAFQQLGYQMPFTDLETAVFGHLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMY3</accession>
    <name>A0A392VMY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011203445">
        <property type="protein sequence ID" value="MCI88833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3590" checksum="94A67FDF4A419703" modified="2018-12-05" version="1" fragment="single">DFAKAVGIKKPRNLAELLAKAQPYIQYEERE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQ44</accession>
    <name>A0A392VQ44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011223919">
        <property type="protein sequence ID" value="MCI89613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQ44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="2974" checksum="533D68C33D13BB4A" modified="2018-12-05" version="1" fragment="single">PGPASSGVVFNRVSVAAGSAALVVFVAAFII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQD8</accession>
    <name>A0A392VQD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011206047">
        <property type="protein sequence ID" value="MCI88925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6822" checksum="63187EB06F5D8603" modified="2018-12-05" version="1" fragment="single">MEPKQPNHTLQAAIRRNDDRGGLNEMEEMTLEKGEVKIEPSDKETVVRRQSPTHHHTSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTX7</accession>
    <name>A0A392VTX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011283807">
        <property type="protein sequence ID" value="MCI91854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7743" checksum="0C7F129C7D896E2F" modified="2018-12-05" version="1" fragment="single">EEEKLKDKEPGTEKIYRPIPDGEFEIIPLGEDPSKGIKIGDGLLDLVKRQLEACLKENAELFAWSAAEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VV55</accession>
    <name>A0A392VV55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011255616">
        <property type="protein sequence ID" value="MCI90841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VV55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5540" checksum="9D964D4DE80B297D" modified="2018-12-05" version="1" fragment="single">MKHNDGDVTISNKQVIEIESEYQPDSSGGQVENPIASEDKEEDEHDHEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVJ6</accession>
    <name>A0A392VVJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011252662">
        <property type="protein sequence ID" value="MCI90735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8050" checksum="30DC1AC39B4775E9" modified="2018-12-05" version="1" fragment="single">WQEFVQSDRIAYEARMVQNTAIFEDQISAYERRMKAEAEAAAARSPIFTYSELGMDDPGEFHNFMDPPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXQ8</accession>
    <name>A0A392VXQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011266714">
        <property type="protein sequence ID" value="MCI91240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4164" checksum="F129232D9279D26B" modified="2018-12-05" version="1" fragment="single">VEDNKSFDEHTPAKRIPVFSPAEMRSLSVEHKVPAIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYA9</accession>
    <name>A0A392VYA9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011301800">
        <property type="protein sequence ID" value="MCI92462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6680" checksum="CB0BB82AFC83433B" modified="2018-12-05" version="1" fragment="single">MEAVMHFQGELASDAPFIEAEENVHFCHHEMVSTIFDQTMSLKESMRVHEELLNLAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYR2</accession>
    <name>A0A392VYR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011331438">
        <property type="protein sequence ID" value="MCI93518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7743" checksum="E1AF1818C558DC17" modified="2018-12-05" version="1" fragment="single">VGHDKMVDDDDDIQNENNQKVDTLLLHVVDIVADNNLMKVDILRAADMQVVDRLLVDRNMNQVAEDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W054</accession>
    <name>A0A392W054_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011334340">
        <property type="protein sequence ID" value="MCI93637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W054"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6725" checksum="AB3DEEEB0BC4CCE9" modified="2018-12-05" version="1" fragment="single">SIKSKQNNHVLSLSLSEKQRAASETNPRATGSKRPVASSNEIQRESLARREAPSLGEHSSPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1U0</accession>
    <name>A0A392W1U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011322390">
        <property type="protein sequence ID" value="MCI93191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6689" checksum="74BEABD7CA48A3CE" modified="2018-12-05" version="1" fragment="single">HTGTPPLAFTTVKSNPPPSPFPIFGDGAGNIGAGNNSDKTLLQLPETSIVSSPEGEVTEGRELRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA06</accession>
    <name>A0A392WA06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011419920">
        <property type="protein sequence ID" value="MCI96633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6810" checksum="EB5D4E9DC95958D0" modified="2018-12-05" version="1" fragment="single">EHDPLVLSLQEQLTTQKAETEQIKEDGKNLIETQRHVLQKQEETNAKLDAILAFITRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WBS1</accession>
    <name>A0A392WBS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407859">
        <property type="protein sequence ID" value="MCI96190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WBS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="2772" checksum="2D4F8BA6BC293948" modified="2018-12-05" version="1" fragment="single">VDGGWRGMAVASSAVGVGGGNVRGVHMST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WCJ1</accession>
    <name>A0A392WCJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Subtilisin-like protease</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011443757">
        <property type="protein sequence ID" value="MCI97452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WCJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="7187" checksum="0BDBDCF0F7C6AB24" modified="2018-12-05" version="1" fragment="single">MGVEEFLDWQIDVDRFFDVMDVPEIKQVKMVAIRLKSIAAVWWDRLVVQRKRQRKTPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX88</accession>
    <name>A0A392MX88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">E3 ubiquitin-protein ligase UBR7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020163">
        <property type="protein sequence ID" value="MCH91318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd15542">
        <property type="entry name" value="PHD_UBR7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd19677">
        <property type="entry name" value="UBR-box_UBR7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040204">
        <property type="entry name" value="UBR7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047506">
        <property type="entry name" value="UBR7-like_UBR-box"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003126">
        <property type="entry name" value="Znf_UBR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13513">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13513:SF9">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02207">
        <property type="entry name" value="zf-UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00396">
        <property type="entry name" value="ZnF_UBR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51157">
        <property type="entry name" value="ZF_UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="UBR-type" evidence="5">
        <location>
            <begin position="12"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="UBR-type" evidence="4">
        <location>
            <begin position="12"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="15072" checksum="CD612255229CA12A" modified="2018-12-05" version="1" fragment="single">EADLVLGGDEGKECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFKCDCGNSKFGEFYCKISPSKDIENVENSYNHNFKGLYCTCGRPYPDPDAEEQIEMIQCCLCEDWFHEEHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N134</accession>
    <name>A0A392N134_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ROOT HAIR defective 3 GTP-binding family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024962">
        <property type="protein sequence ID" value="MCH93451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N134"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="29"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="26674" checksum="72967A8D3D847C05" modified="2018-12-05" version="1" fragment="single">MQEQVQEYVQNCVICQQAKVSNTLPSGLLQPLPIPKQVWEDIAMDFITGLPIVNGLSFIMVVVDRLTKYAHFLTLKADYSSKTVAEAFMSNLVKLHEMPRSIVSDRDKVFTSAFWHHLFKLHGTTLAMSSAYHPQTDGQSEILNKCLEMYLRCFTYENPKGWVKALPWSEFWYNTAFHTKLSMTPFKALYGRDPPTLTRQPITSQDPLELREQLANKDSLFEKLIDSLQSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAS0</accession>
    <name>A0A392NAS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Subtilisin-like protease SDD1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for arbuscular mycorrhiza (AM) development during AM symbiosis with AM fungi (e.g. Glomeromycota intraradices).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Secreted</location>
            <location evidence="2">Extracellular space</location>
            <location evidence="2">Apoplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031637">
        <property type="protein sequence ID" value="MCH96148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd02120">
        <property type="entry name" value="PA_subtilisin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.30.30:FF:000005">
        <property type="entry name" value="subtilisin-like protease SBT1.5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0052">Apoplast</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 14" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <keyword evidence="9" id="KW-0720">Serine protease</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="12">
        <location>
            <begin position="9"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="PA" evidence="13">
        <location>
            <begin position="157"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH96148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="384" mass="39465" checksum="562B80018180F5B3" modified="2018-12-05" version="1" fragment="single">NADVLGNAKGTAAGIAPHAHLAIYKVCFGEDCPESDILAALDAAVEDGVDVISISLGLNEPPXFFNDSTAIGAFAATQKGIFVSCSAGNSGPSEGSLVNGAPWILTVGASTIDRSIVATAVLGNGEEFDGETVFQPSDFTPTLLPLAFAGTNGKLESTFCANGTLNDIDFKGKVVLCERGGGIGRIAKGQEVKRAGGAAMILTNDEINGFSLSADVHVLPATHVSFAAGQKIKAYINSTSTPTATISFKGTIIGNSQSPAVASFSSRGPNLPSPGILKPDIIGPGVNILAAWPFPLDNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAIKSAILTTADTLNLENKLIVDETLQPANIFATGSGHVNPSRADDPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKZ6</accession>
    <name>A0A392NKZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-galactosidase 15-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042187">
        <property type="protein sequence ID" value="MCI00092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048913">
        <property type="entry name" value="BetaGal_gal-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21467">
        <property type="entry name" value="BetaGal_gal-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-galactosidase galactose-binding" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4306" checksum="27FFB0C9993CC11E" modified="2018-12-05" version="1">MTWYKTTFNTPEGTYSVVLDLQGLGKGQAWVNGKSIGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTM2</accession>
    <name>A0A392NTM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent RNA helicase SUPV3L1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047264">
        <property type="protein sequence ID" value="MCI01825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022192">
        <property type="entry name" value="SUV3_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12513">
        <property type="entry name" value="SUV3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-dependent RNA helicase SUV3 C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7933" checksum="FBDCA5D21EA1DA1F" modified="2018-12-05" version="1" fragment="single">VLDLYVWLSFRLDESFPDHELASSQKALCSMLIEEFLDRYGWQKPMAGRLPVRKMSSSLLSQTMRPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTU4</accession>
    <name>A0A392NTU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049742">
        <property type="protein sequence ID" value="MCI02640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21983" checksum="55F76496EC12B6DC" modified="2018-12-05" version="1" fragment="single">VSSDSGPAVEMVKKWTRENYVFPQDRDMLLWVEEKIEGVPSRYHDDDQVSSLCLFDVIGLRFPLSPFEWVGSESSVPLFFSFFGVLRTFSDSSKNQGFVSFQQKPKIWTQFIDFYKWERDEYFLVGSCHEEAHNMLCYVNQSRPSDSGSLSDTDDEVDDDIRSHFNELPPKRVPQRGGETDEGVCHLVSGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NW91</accession>
    <name>A0A392NW91_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">protein-ribulosamine 3-kinase</fullName>
            <ecNumber evidence="2">2.7.1.172</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>N(6)-D-ribulosyl-L-lysyl-[protein] + ATP = N(6)-(3-O-phospho-D-ribulosyl)-L-lysyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:48432"/>
            <dbReference type="Rhea" id="RHEA-COMP:12103"/>
            <dbReference type="Rhea" id="RHEA-COMP:12104"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:90418"/>
            <dbReference type="ChEBI" id="CHEBI:90420"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.172"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:48433"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the fructosamine kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.172" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010054243">
        <property type="protein sequence ID" value="MCI04083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NW91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102193">
        <property type="term" value="F:protein-ribulosamine 3-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000264">
        <property type="entry name" value="Protein-ribulosamine 3-kinase, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016477">
        <property type="entry name" value="Fructo-/Ketosamine-3-kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12149">
        <property type="entry name" value="FRUCTOSAMINE 3 KINASE-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12149:SF8">
        <property type="entry name" value="PROTEIN-RIBULOSAMINE 3-KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03881">
        <property type="entry name" value="Fructosamin_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI04083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11403" checksum="BC16D26343846995" modified="2018-12-05" version="1">MSKDPVREWILSEGKASKITKISPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETETIRVPKPYKVGPLPTGGSFIIMEFIEFGGSRGDQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAT0</accession>
    <name>A0A392PAT0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070511">
        <property type="protein sequence ID" value="MCI08842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="62"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20940" checksum="9CD680A47C603647" modified="2018-12-05" version="1" fragment="single">LGEDPSKGVKIDTGLPDLARKQLKACLKENADLFSWSAIEMSGLDPEVACHQLTIDLAASAVVQRRRYNQIPMAKADKEKMAFMTESGNYYNVIPFSLKNAGATYQRMMNKVFQGEIGDMLEVYMDNMIVKSHEETDHAAHLQKVFEQARQCKMRFNPKKRTFRVRAGKFLGFYLIERGIEANP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHY7</accession>
    <name>A0A392PHY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein SRG1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081163">
        <property type="protein sequence ID" value="MCI11691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Non-haem dioxygenase N-terminal" evidence="3">
        <location>
            <begin position="47"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI11691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8813" checksum="3D5738099C5BC5AE" modified="2018-12-05" version="1">MSRFGTSRLVPSVHELAKETITEIPHQFLQTNQEPTIVLNKASLPQVPVIDLGKLLSEDAIELEKLDHACKEWGFFQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJC1</accession>
    <name>A0A392PJC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA repair protein RAD23-1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081326">
        <property type="protein sequence ID" value="MCI11737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031593">
        <property type="term" value="F:polyubiquitin modification-dependent protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070628">
        <property type="term" value="F:proteasome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.10:FF:000003">
        <property type="entry name" value="UV excision repair protein RAD23 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10621">
        <property type="entry name" value="UV EXCISION REPAIR PROTEIN RAD23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10621:SF0">
        <property type="entry name" value="UV EXCISION REPAIR PROTEIN RAD23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00627">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00165">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBA" evidence="1">
        <location>
            <begin position="13"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="14991" checksum="BF7D0D090D18395B" modified="2018-12-05" version="1" fragment="single">TYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNQTETGGVTSGVVPGVPNSSPLNMFPQETASGTGAGAGSLDFLRNNPQVGFCFIYNTLSVKEFMFDTPMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWW7</accession>
    <name>A0A392PWW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Serine/threonine-protein phosphatase 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099716">
        <property type="protein sequence ID" value="MCI16177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051134">
        <property type="entry name" value="PPP_phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45668">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45668:SF9">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN PHOSPHATASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0464">Manganese</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI16177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11053" checksum="2E2E0505466FF274" modified="2018-12-05" version="1" fragment="single">GGLFRSVTVTPSKRLKGKKNRKINVTTDSKNLSLGSLEELSKARRSVLDPPWEGQNLIPGDVLWSDPSKTSGLSPNKERGIGLVWGPDVTEAFLKKYQFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXA9</accession>
    <name>A0A392PXA9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102294">
        <property type="protein sequence ID" value="MCI16753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35758:SF3">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35758">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="113" mass="12658" checksum="1591F24E0B40C21F" modified="2018-12-05" version="1">MELGASKRGSKFSLYEKLATIGLVVLAVASPLYMERKSECDSDLEDDEQPINIAVWLPLVLFLLILCIALSAFLDRSFAVFDRYWIHRVCGSSGGIFAIITVLFLILKWKSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PY17</accession>
    <name>A0A392PY17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100374">
        <property type="protein sequence ID" value="MCI16330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PY17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4177" checksum="0F5086243BA1D19A" modified="2018-12-05" version="1" fragment="single">GPAWWCDVGKIDKGCGIGSLGWCSEPMDLDVGEGRVLVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PY51</accession>
    <name>A0A392PY51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098504">
        <property type="protein sequence ID" value="MCI15895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PY51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="114"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI15895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="22590" checksum="1E5FB73951FEB1A3" modified="2018-12-05" version="1" fragment="single">MQQTNAIDECFTIEVVKPLVNQDVLQGLSDDIAPEIALLLRNYQGVFHTPTGLPPPRDQNHEIQLQEGTKPVKVRPYRYPHSQKEQIEKMVQEMLDQGIIKPSNSPFSSPIILVKKKDGSWRFCTDYRALNSVTIKDSFPMPTVDELLDELHGAQFFSKLDLRSGYHQILVKPEDRHKTAFRTHHGHYEWLVMPFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4C7</accession>
    <name>A0A392Q4C7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucoanthocyanidin reductase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111400">
        <property type="protein sequence ID" value="MCI18689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008030">
        <property type="entry name" value="NmrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050608">
        <property type="entry name" value="NmrA-type/Isoflavone_red_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43349:SF16">
        <property type="entry name" value="LEUCANTHOCYANIDIN REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43349">
        <property type="entry name" value="PINORESINOL REDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05368">
        <property type="entry name" value="NmrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NmrA-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="12972" checksum="1AF69B7E52F4C710" modified="2018-12-05" version="1">MNELASLWEKKIARKIPRVIVSEDDLLAISAENCIPESIVASITHDIFINGCQVNFKIDGIHDVEISTLYPGESLRSLEDCYEKFVVMAADKIHKGETGVTATAGGAKALVEPVPITASC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5F8</accession>
    <name>A0A392Q5F8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Inactive protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112605">
        <property type="protein sequence ID" value="MCI18960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5F8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9744" checksum="BC4042FA254B7159" modified="2018-12-05" version="1" fragment="single">FFYYSAGRKWGFPRFAGDCASGMKKCPPGTILEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGSVAAEAKKGQASWVVLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8E9</accession>
    <name>A0A392Q8E9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LOB domain-containing protein 36-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115196">
        <property type="protein sequence ID" value="MCI19525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8E9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11159" checksum="930B2A6D90FE9D1D" modified="2018-12-05" version="1" fragment="single">MLQQQQHNNPFGGNSLYPYNGNVAAVTAANQMVIRDPQPPPQQQILDPHQLAIAVAAREQQDIFRTFENQQQQQDFLRFSGGFDVDSVSNSAGGFTPVSAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8R0</accession>
    <name>A0A392Q8R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119104">
        <property type="protein sequence ID" value="MCI20272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8R0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12539" checksum="0C03EF116285F736" modified="2018-12-05" version="1" fragment="single">MDELVVFQKNTREWVEGVNKEFETAQLKKKGRLFTDHFFDESTVSNQVWKENLGLLDSDLSMHMKFSLEPKTLFVKKDVFENPEYEAFKTEVREKLSTQDSKISEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9N7</accession>
    <name>A0A392Q9N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119855">
        <property type="protein sequence ID" value="MCI20440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12044" checksum="3445D49061C29ED9" modified="2018-12-05" version="1" fragment="single">MSRPGALTRSRAIAAIQQGEPSNLHDVEIIPEPLNTQHSRQAPQFATQASILANIFSSIHASLSPYRNHQTPLLNNAQPQNTAENHITNQPRRASQEQQTYDMFSTML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QA48</accession>
    <name>A0A392QA48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Stearoyl acyl carrier protein desaturase</fullName>
        </submittedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the fatty acid desaturase type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118270">
        <property type="protein sequence ID" value="MCI20135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QA48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045300">
        <property type="term" value="F:stearoyl-[ACP] desaturase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004768">
        <property type="term" value="F:stearoyl-CoA 9-desaturase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="entry name" value="Ribonucleotide Reductase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005067">
        <property type="entry name" value="Fatty_acid_desaturase-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31155">
        <property type="entry name" value="ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31155:SF9">
        <property type="entry name" value="STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 7, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03405">
        <property type="entry name" value="FA_desaturase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0809">Transit peptide</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI20135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="17051" checksum="4E8DD35509CCA65A" modified="2018-12-05" version="1">MPPQKIEIFKSLEGWAEETLLTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QD49</accession>
    <name>A0A392QD49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128548">
        <property type="protein sequence ID" value="MCI22084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QD49"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051606">
        <property type="term" value="P:detection of stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000470">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase RPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48065:SF72">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING N-TERMINAL PLANT-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48065">
        <property type="entry name" value="OS10G0469600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI22084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8662" checksum="266C49E1A48D78F5" modified="2018-12-05" version="1" fragment="single">MLNFSENHLSGNIPGTIGECVSLEYLYLQGNSFHGVIPASLASLKGLQQLDLSRNRLSGSIPKGVFLNATEVAVTGNNNLCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE25</accession>
    <name>A0A392QE25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010125366">
        <property type="protein sequence ID" value="MCI21525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10212" checksum="C7E9F9109BC0A219" modified="2018-12-05" version="1">MTLGPGPCVEEDFETFPVTSLFARRDSWLARKRGMARVCEDMLVIACSYFRKLLEMITRRISQNVACFLRARYEENFAKCCVFSASACP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKK4</accession>
    <name>A0A392QKK4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pectin acetylesterase</fullName>
            <ecNumber evidence="6">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Secreted</location>
            <location evidence="2 6">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the pectinacetylesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010143255">
        <property type="protein sequence ID" value="MCI24728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009505">
        <property type="term" value="C:plant-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052793">
        <property type="term" value="F:pectin acetylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004963">
        <property type="entry name" value="PAE/NOTUM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562">
        <property type="entry name" value="NOTUM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562:SF56">
        <property type="entry name" value="PECTIN ACETYLESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03283">
        <property type="entry name" value="PAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0134">Cell wall</keyword>
    <keyword evidence="5 6" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI24728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8516" checksum="2A3D19ED376BF668" modified="2018-12-05" version="1" fragment="single">MENQIPFTGILSNKPEENPDFFNWNRVKLRYCDGASFSGDSENEAAELQFRGQRIWLAAMEELMSQGMQNAEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QL38</accession>
    <name>A0A392QL38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pleiotropic drug resistance protein 12-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010139131">
        <property type="protein sequence ID" value="MCI24015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QL38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48040:SF28">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 39-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48040">
        <property type="entry name" value="PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6960" checksum="6C5CC3396E778A5E" modified="2018-12-05" version="1" fragment="single">MKFVDEVMDLVELDNLRDAIVGLPGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR96</accession>
    <name>A0A392QR96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010152737">
        <property type="protein sequence ID" value="MCI26354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="90"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="14715" checksum="1108EB5D29F08B89" modified="2018-12-05" version="1" fragment="single">MRTITPEERRQFLEKSRQQKLKAISTXPDPLTQLIVDDDASKGAKRKKKTEAGRISMEISMKESTAAVVEKGEVAEVVHPASKKRKVTNAATGEAAKGKGAATVPPSSPQADPAASKGDSSPAWDPLLHPMEFIEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWI2</accession>
    <name>A0A392QWI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010165426">
        <property type="protein sequence ID" value="MCI28397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10091" checksum="52F92F724A027D7E" modified="2018-12-05" version="1" fragment="single">HHYSSPEFTTAATAAGLHLSPHTRLNSLPLRPYHMSSPPRSSSTPLPPFKSFKLISLHSCRLSSSSPLFAAVGVHKVTLSKPKQETTSKGEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QXP8</accession>
    <name>A0A392QXP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Vacuolar-sorting receptor 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VSR (BP-80) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164850">
        <property type="protein sequence ID" value="MCI28306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QXP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000178">
        <property type="entry name" value="vacuolar-sorting receptor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="15" id="KW-0675">Receptor</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCI28306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5874" checksum="9D66591ED9475AE8" modified="2018-12-05" version="1" fragment="single">METNECLENNGGCWQEKSSNITACRDTFRGRVCECPIVKNVKFVGDGYTHCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R449</accession>
    <name>A0A392R449_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010182909">
        <property type="protein sequence ID" value="MCI30884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R449"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2321" checksum="7AC926EE9516BAED" modified="2018-12-05" version="1" fragment="single">MWDATMAPPPPEPPDVSRRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R686</accession>
    <name>A0A392R686_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188330">
        <property type="protein sequence ID" value="MCI31594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R686"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13199" checksum="FB39E6EAA2C5E9E1" modified="2018-12-05" version="1" fragment="single">ECDPASYSAVVAAPGQGVVGGHVPGEEVTSSDDVSAGESWTVAKFGLDGETIGRSLSTGISWVFCGRFPDWRSVKICMSSPSSDEREASHPSLDQIPAASDRYRPLEKGRYRAPAGEKLGRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8F9</accession>
    <name>A0A392R8F9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192469">
        <property type="protein sequence ID" value="MCI32070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5817" checksum="DB9559F25210F85C" modified="2018-12-05" version="1" fragment="single">VYTGGGVDTDWGLSWTVGSFESPILSPAISNFLFRSSIVLLCSSFRLETSLAKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF60</accession>
    <name>A0A392RF60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Far upstream element-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010218017">
        <property type="protein sequence ID" value="MCI34889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10288">
        <property type="entry name" value="KH DOMAIN CONTAINING RNA BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="K Homology" evidence="2">
        <location>
            <begin position="26"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI34889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="5838" checksum="61587E1B49CB7B81" modified="2018-12-05" version="1" fragment="single">ADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEKVGLIIGKGGETIKSLQTRTGARIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIA1</accession>
    <name>A0A392RIA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010228853">
        <property type="protein sequence ID" value="MCI35969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9843" checksum="D8C4EA5D1D83219B" modified="2018-12-05" version="1" fragment="single">MEVNKQPLVEEGEKSKKDKKNKKEKNKTDQEDKVVTKAEKQPKQHSGLEDKPAEQKKKKKKQKKTHSTSEHSKANTSMPTNEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIC8</accession>
    <name>A0A392RIC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010227156">
        <property type="protein sequence ID" value="MCI35794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6162" checksum="101ADAAEB0C356B6" modified="2018-12-05" version="1" fragment="single">MVEPFVLMNSKSSTASVIMPALHFLNQATLAQSIQQKVKCIYFRLRLHSYPLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RM72</accession>
    <name>A0A392RM72_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cytochrome P450</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010235909">
        <property type="protein sequence ID" value="MCI36636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RM72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47952">
        <property type="entry name" value="TRYPTAMINE 5-HYDROXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47952:SF1">
        <property type="entry name" value="TRYPTAMINE 5-HYDROXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="43" mass="4689" checksum="8F7696BBB0023169" modified="2018-12-05" version="1" fragment="single">MRAVIKETFRLHPAAPVLVPRESMEGRRGCPAITFAVPAVELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPC6</accession>
    <name>A0A392RPC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010250318">
        <property type="protein sequence ID" value="MCI37954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5095" checksum="9089B6914E250F2B" modified="2018-12-05" version="1" fragment="single">SDGKSERNVPTGYGWRRLATSSPPPRHATTGDPQERRQATTSEERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRW0</accession>
    <name>A0A392RRW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010254453">
        <property type="protein sequence ID" value="MCI38325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6304" checksum="DDD4C94391261089" modified="2018-12-05" version="1">MTYHRGMMKAVEESRKSGEDLPSYHDTIHRGHDEAKLHAIVATMGAMDAQKKPKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTN6</accession>
    <name>A0A392RTN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010267173">
        <property type="protein sequence ID" value="MCI39424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4073" checksum="E40D7D32F7BE0B26" modified="2018-12-05" version="1" fragment="single">TEHSATVMFVILLHLVSTGPLGIIAMLRVLVTGRIKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWA0</accession>
    <name>A0A392RWA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010282285">
        <property type="protein sequence ID" value="MCI40649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13214" checksum="99ECE07DE5B72836" modified="2018-12-05" version="1" fragment="single">ASLKLESGVKMEELPVVCEFLDVFPGDVSNVPPEKEVEFTIDLVPGTGPISIRLSVSPWGAPVLLVKKKDRSMRLCIDFRQLNKVTIKNKYPLPRIDNLMDQLVGARVFSKIDLRSGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWS0</accession>
    <name>A0A392RWS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase 8 plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010281700">
        <property type="protein sequence ID" value="MCI40602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI40602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11069" checksum="64D1CC7248A1BE88" modified="2018-12-05" version="1" fragment="single">MKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAVLNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMAIMTAVFFYLVHETNFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RY59</accession>
    <name>A0A392RY59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CDK5RAP1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010280724">
        <property type="protein sequence ID" value="MCI40516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RY59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035597">
        <property type="term" value="F:tRNA-2-methylthio-N(6)-dimethylallyladenosine(37) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43020">
        <property type="entry name" value="CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43020:SF2">
        <property type="entry name" value="MITOCHONDRIAL TRNA METHYLTHIOTRANSFERASE CDK5RAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12812" checksum="CA8D824CA9CC5C94" modified="2018-12-05" version="1" fragment="single">MCSFCIVPFTRGRERSRPVDSIVREVGELWKEGVKEVTLLGQNVNSYNDASVIEKEAEPGSNWKLSEGFSSISKVRTTGLRFADLLDRLSLEFPEMRFRFTSPHPKDFPDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0U4</accession>
    <name>A0A392S0U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Low-temperature-induced 65 kDa protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010299427">
        <property type="protein sequence ID" value="MCI42032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8453" checksum="B3555A3E844A3059" modified="2018-12-05" version="1" fragment="single">MFGCCTVYDSEDIKNATPTPEFEKVGNLGNSGIDFEGTKVKGEEPYHDTPVEENDQAKTFPVEETPEQYKPNLAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0Y1</accession>
    <name>A0A392S0Y1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010294902">
        <property type="protein sequence ID" value="MCI41670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0Y1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12940" checksum="CBF1EC73769CC410" modified="2018-12-05" version="1" fragment="single">ISGEACGLNEALNLIDRLQLHKVIIETDSLTLVQAVEANKSIRRSWGVVVQRCIDFLRRNPSSSVKWIRREQNCVAHQLARWAEVEQNRDWAYSVPDCIIPLIQKDLGFCNPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2Z5</accession>
    <name>A0A392S2Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010306269">
        <property type="protein sequence ID" value="MCI42574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8805" checksum="5F2932C07E1FEDE0" modified="2018-12-05" version="1">MPDKIRADFLTIVLSTDLVRLGLARTRGVKAMLGITMVETGVIRLQEQFAHFVNQRLFQSLDRSEMNQGSFQFGFEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6L1</accession>
    <name>A0A392S6L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010329276">
        <property type="protein sequence ID" value="MCI44339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6L1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5371" checksum="857F375AD3935392" modified="2018-12-05" version="1" fragment="single">MGMGTNIPSWGRGWRQNSPAGTSGQGTGKLPPHIPRPVDIPNSKLISLCTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8Z2</accession>
    <name>A0A392S8Z2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010342998">
        <property type="protein sequence ID" value="MCI45351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="8">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI45351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5125" checksum="5CC6648A9EE95719" modified="2018-12-05" version="1" fragment="single">MAPGVAILAAMVPKSDEPGSVPIGKKPSLFGIKSGTSMACPHVTGAAAFIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBV9</accession>
    <name>A0A392SBV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010357524">
        <property type="protein sequence ID" value="MCI46433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1754" checksum="FFA0D6D1E50C9AAF" modified="2018-12-05" version="1" fragment="single">MAEGAAATNPTGFISTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBY0</accession>
    <name>A0A392SBY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010357729">
        <property type="protein sequence ID" value="MCI46453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4377" checksum="F6B54C4EEF1682E0" modified="2018-12-05" version="1" fragment="single">YHRRIYDGKVKIQAYSTEVDIVGKVVELRNSLAMVVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHF6</accession>
    <name>A0A392SHF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010381127">
        <property type="protein sequence ID" value="MCI48069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="8061" checksum="D204A46FBB3E3341" modified="2018-12-05" version="1" fragment="single">SEEEHEEHLRLVLQVLRDNKLYANQSKCEFWMEKVNFLVHVISKEGIAVDPAKIDVVLSWKQPQTVTDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS12</accession>
    <name>A0A392SS12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010428707">
        <property type="protein sequence ID" value="MCI51222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="4916" checksum="2D7306FC3599CDE9" modified="2018-12-05" version="1" fragment="single">GEGRLTEVVDAMLVEVLVVVAVTVVAVSVAAMSLAAAIGVVVVVAGAVITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZJ3</accession>
    <name>A0A392SZJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010460967">
        <property type="protein sequence ID" value="MCI53290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9665" checksum="B7328E4C84F60312" modified="2018-12-05" version="1" fragment="single">AEHYTLIKTKWIVQERSIDFPWISFLPEMQETAEQYRWMDFNTMIGDCNISWVEKFYANALGTQRMTTPLQCVGGPSVTRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T326</accession>
    <name>A0A392T326_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010496418">
        <property type="protein sequence ID" value="MCI55439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T326"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1969" checksum="4DCB3C7D692671A4" modified="2018-12-05" version="1" fragment="single">PLMSPDVEAVNLLKCLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5B7</accession>
    <name>A0A392T5B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510270">
        <property type="protein sequence ID" value="MCI56311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7917" checksum="7AF57672BA3F61A3" modified="2018-12-05" version="1" fragment="single">LIDVERGELMLRTEGEQIMFDIFEGMKKYDEEEPQCYRVEIIEVEENKCKVHTSSLPVERVVDLIDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5V1</accession>
    <name>A0A392T5V1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine carboxypeptidase-like 20-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010508162">
        <property type="protein sequence ID" value="MCI56162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5V1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5474" checksum="E24AA1462861ABCE" modified="2018-12-05" version="1" fragment="single">GNALVPFVHGMGLISDELFEEVNRECNGNFYNSLNDNCTNKLSKIDEVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T666</accession>
    <name>A0A392T666_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010514318">
        <property type="protein sequence ID" value="MCI56568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T666"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4849" checksum="52D78FC0199885A2" modified="2018-12-05" version="1" fragment="single">MKGVVSFYNKNLFKLRCDEVQYVDGLAIKLMGNGTLQAEKVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6Z4</accession>
    <name>A0A392T6Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010506399">
        <property type="protein sequence ID" value="MCI56065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6762" checksum="7FC8E3C198CBABA7" modified="2018-12-05" version="1" fragment="single">MVLESNGVSIWQMAVTLPKRDVGVTNGVRIGNGYSKIFHGSDDHENSESDEDSDSDLPDVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T728</accession>
    <name>A0A392T728_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010504734">
        <property type="protein sequence ID" value="MCI55976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T728"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516:SF11">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4276" checksum="53FBF6430577DEC7" modified="2018-12-05" version="1" fragment="single">FFAKLGASLNVDLLIHASPPSEILDLQRNGATGTYFLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TA90</accession>
    <name>A0A392TA90_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010529240">
        <property type="protein sequence ID" value="MCI57464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TA90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071013">
        <property type="term" value="C:catalytic step 2 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002464">
        <property type="entry name" value="DNA/RNA_helicase_DEAH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934:SF83">
        <property type="entry name" value="PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00690">
        <property type="entry name" value="DEAH_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI57464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8900" checksum="26A35439EF3047C9" modified="2018-12-05" version="1" fragment="single">MGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFFAQPELESYSVVMVDEAHERTLSTDILFGLVKDVARARPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAE9</accession>
    <name>A0A392TAE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010536356">
        <property type="protein sequence ID" value="MCI57862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4490" checksum="38C7900DD645D042" modified="2018-12-05" version="1">MLCSACASLGEALRSPGDIRRQPSPAVASWDVSYWLASLPVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TD89</accession>
    <name>A0A392TD89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-protease polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010557596">
        <property type="protein sequence ID" value="MCI59123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TD89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9612" checksum="7C6043DA83D538EC" modified="2018-12-05" version="1" fragment="single">NTANTSHGVSNVPEGNTSPYHATEGVQLVQSVPTSATPAVNHVEDEAAQKYEALEERLKAIEGFSAFGLDTLDMCLVPDVVMPPKFKTPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THI2</accession>
    <name>A0A392THI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010580967">
        <property type="protein sequence ID" value="MCI60412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7330" checksum="37CB710FDF027513" modified="2018-12-05" version="1">MNSDGSCKDNGIAGCGGLIRGSDGEWLGDFAKHIGSGSAYVAELCGMLEGLKLARKVGISSYRSECGLFVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TID7</accession>
    <name>A0A392TID7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein ARABIDILLO 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010568295">
        <property type="protein sequence ID" value="MCI59685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TID7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3750" checksum="AB9815C3788DA5EF" modified="2018-12-05" version="1" fragment="single">SCSNASPGLQERAAGALWGLSVSEANRTLLYDGLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJD9</accession>
    <name>A0A392TJD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium-coupled neutral amino acid transporter 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010577986">
        <property type="protein sequence ID" value="MCI60236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJD9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031090">
        <property type="term" value="C:organelle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF634">
        <property type="entry name" value="TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="7">
        <location>
            <begin position="2"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI60236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7479" checksum="534E740D4FE6DEA5" modified="2018-12-05" version="1" fragment="single">MGLPACVKKLGMVPGLIAILLTALLTEKSIEFMIRFSRAGNLTSYGSLMGDAFGRYGKALVEICVVINNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLM4</accession>
    <name>A0A392TLM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010612128">
        <property type="protein sequence ID" value="MCI62061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9312" checksum="F10EA4E2487AAF5E" modified="2018-12-05" version="1" fragment="single">VEAFEKVVVETQTLESEKPKSAETLGQSDLISADNRAAASPSQGVVFYNPSPTKKVVDKVLSSLKEVIPDTDVVPDVSTSLAQPEPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP41</accession>
    <name>A0A392TP41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010627706">
        <property type="protein sequence ID" value="MCI62913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5970" checksum="75197232D03B16A7" modified="2018-12-05" version="1" fragment="single">MLKLTNPFLEEIKECQKRDQKLMEKLMLINEGKEIDFGVDENGVIRYRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSD3</accession>
    <name>A0A392TSD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010649378">
        <property type="protein sequence ID" value="MCI64101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5868" checksum="59AF3A0BED1680DF" modified="2018-12-05" version="1" fragment="single">LRISEELIELQFRTSSAGDTEQDCIAPLSSCDRIFLRTTPIATEPCCSSSSSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW67</accession>
    <name>A0A392TW67_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010658286">
        <property type="protein sequence ID" value="MCI64540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW67"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6527" checksum="BF49FDECBE78BB26" modified="2018-12-05" version="1">MNSEQRFTVLVVVSNRVGCVMKGISRLVLMLAANMVKGGRHSQCHLSLTQLNNDEYCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U1B8</accession>
    <name>A0A392U1B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010712382">
        <property type="protein sequence ID" value="MCI67243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U1B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9112" checksum="AF92FB03A8520E43" modified="2018-12-05" version="1" fragment="single">QEKKKGESKKRKSDEAGIGGSKSRTKRKHEKKAKEDSSKTDSDDKTLAEKLKRKAKAEDSKAAQKHSSKGKSSEPIIDKSAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5E5</accession>
    <name>A0A392U5E5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010728600">
        <property type="protein sequence ID" value="MCI68007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5E5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3657" checksum="E2B9ADF85BF84CB4" modified="2018-12-05" version="1" fragment="single">QKLVIGDRFGGDGGQACRGCPREGCSSYHGQGFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U913</accession>
    <name>A0A392U913_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010753663">
        <property type="protein sequence ID" value="MCI69317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U913"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2191" checksum="655D1A9C5FE16206" modified="2018-12-05" version="1" fragment="single">MSVTVVMADVRTRAGRAAIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBQ3</accession>
    <name>A0A392UBQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010786628">
        <property type="protein sequence ID" value="MCI70959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBQ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7686" checksum="4760281DE2810C4B" modified="2018-12-05" version="1" fragment="single">MKKEKEIVKEVEKKKGDKKRKAVGIKFDEERSKMRHEKKAKTSDSGTESDEETLAQKLKQKTSEAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBZ8</accession>
    <name>A0A392UBZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010765839">
        <property type="protein sequence ID" value="MCI69950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7502" checksum="5D9B5C5ED4DB118C" modified="2018-12-05" version="1" fragment="single">RASPSCASRRLQKQNCLRTKIMCVAPALAARRARVRNQTAFISKNAASRQMLLRAASKAENGEIVAVCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFN9</accession>
    <name>A0A392UFN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010793007">
        <property type="protein sequence ID" value="MCI71260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4985" checksum="2BD82FDE83E8E29A" modified="2018-12-05" version="1" fragment="single">VDGSPRKLWESAEMGMEKDYSPKWRMKTGMGNILDGGAKSGKVPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGN2</accession>
    <name>A0A392UGN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010784773">
        <property type="protein sequence ID" value="MCI70885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6476" checksum="C997F6A1B0C26B99" modified="2018-12-05" version="1" fragment="single">MENNKPPHKVENSPTLKSPVTDENGDDNGVKVVCPAPPQDDKVTEVGSSVKEGEDETVESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHP5</accession>
    <name>A0A392UHP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010812683">
        <property type="protein sequence ID" value="MCI72184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2962" checksum="C575BF5C153251AF" modified="2018-12-05" version="1" fragment="single">MMQDLVVGSVLCAARSGLGASRRRVLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHU0</accession>
    <name>A0A392UHU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010819335">
        <property type="protein sequence ID" value="MCI72498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4584" checksum="5B2E1085721DFFAC" modified="2018-12-05" version="1" fragment="single">MTEPVGFSRSGKWLKQNIRKAPIGNNNNQQSQNGLNRVWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIK0</accession>
    <name>A0A392UIK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010818479">
        <property type="protein sequence ID" value="MCI72454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5270" checksum="8F9F4377FE6DFDC6" modified="2018-12-05" version="1" fragment="single">KNVLASSVGNLQLAEEEMVLDVDGTIPTQPVLQHIGIGAWPGEYFQCSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIP2</accession>
    <name>A0A392UIP2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010819274">
        <property type="protein sequence ID" value="MCI72494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="9076" checksum="B64855356428FA45" modified="2018-12-05" version="1" fragment="single">PKVIENIPELKELPPQWKYVFLGEDSKKPIVISSLLTPLEEKELLKEVETVNDSIRWDLNGVIPIYCLHPPKKEGSKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIX3</accession>
    <name>A0A392UIX3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010839587">
        <property type="protein sequence ID" value="MCI73491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="9091" checksum="5D4C25BB307F7F6A" modified="2018-12-05" version="1" fragment="single">RHNPTLFTGGYAPEGAVKWVEEVEIIFEAMGCTEANKLTLGTYVLREEANKWWKNVRLRMGVGGVVITWEMFKGEFLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJY2</accession>
    <name>A0A392UJY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010823183">
        <property type="protein sequence ID" value="MCI72680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9036" checksum="53D064F7908E681B" modified="2018-12-05" version="1" fragment="single">SNYDYWKSRMIAFLKSLDSRTWKVVVKGWDHPKVQDANGVDTAELKPEEEWSTAEDNTALGNSKALNALFNGVDKNMFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULR4</accession>
    <name>A0A392ULR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010863756">
        <property type="protein sequence ID" value="MCI74579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2381" checksum="57BE852EE750BC42" modified="2018-12-05" version="1" fragment="single">DHGRKNECTDCRGVGYVGGYHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USI3</accession>
    <name>A0A392USI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010885769">
        <property type="protein sequence ID" value="MCI75564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="7719" checksum="DC05F04D4C77EC38" modified="2018-12-05" version="1" fragment="single">SSISSFSSELASGAKSLRPGGSAGFGGNSSSAKKLLLFSSPPKEEGDVVVANGLDGDVRVDSISEGSIYSHHPLADP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXC6</accession>
    <name>A0A392UXC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010972254">
        <property type="protein sequence ID" value="MCI79365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2914" checksum="2018F237C31DDC64" modified="2018-12-05" version="1" fragment="single">ACVGADGDDDDDDDDDDVCGVHCNDDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXZ3</accession>
    <name>A0A392UXZ3_9FABA</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011001892">
        <property type="protein sequence ID" value="MCI80727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3523" checksum="D903FCBB9C46755C" modified="2018-12-05" version="1" fragment="single">MPNRSRPQRRVGDSNVGPGPAQSISSNPPTPPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V191</accession>
    <name>A0A392V191_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010989331">
        <property type="protein sequence ID" value="MCI80170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V191"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7183" checksum="8EE8BF6378DF5243" modified="2018-12-05" version="1" fragment="single">MEESSSSQPQNFPSNPNSQASNFTKGKNMDIDYNAFELVIEQPVDFESLKVNGFEVEKFFTDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V3K5</accession>
    <name>A0A392V3K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011008257">
        <property type="protein sequence ID" value="MCI81000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V3K5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2365" checksum="01D4FCEC4FEBCAE3" modified="2018-12-05" version="1" fragment="single">GKGTCKNVSTPMLKSVTAQVESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7C2</accession>
    <name>A0A392V7C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011084206">
        <property type="protein sequence ID" value="MCI84164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="17" mass="1937" checksum="079B23848357800B" modified="2018-12-05" version="1" fragment="single">NTCCQLPTRRAIYDVAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAC9</accession>
    <name>A0A392VAC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011089883">
        <property type="protein sequence ID" value="MCI84393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4275" checksum="B1C3F360C3C1DD2D" modified="2018-12-05" version="1" fragment="single">EEQLQAFILKAREKKNRPQATAMPDPLSQLVVDDPVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VCZ9</accession>
    <name>A0A392VCZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011134903">
        <property type="protein sequence ID" value="MCI86236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VCZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4088" checksum="E33D38DDB254D66E" modified="2018-12-05" version="1" fragment="single">MAMISLLGEQVDPKARTRTLDEQVSWMARIRGLGEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VK36</accession>
    <name>A0A392VK36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011158993">
        <property type="protein sequence ID" value="MCI87155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VK36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6387" checksum="85B3387917BEDB88" modified="2018-12-05" version="1">MIVIVRGGCAGFSALPWHLSQAQLRAFLGKIWILALEPGAGHCSQGRKVLTFELTFEGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQL8</accession>
    <name>A0A392VQL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011227788">
        <property type="protein sequence ID" value="MCI89783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5580" checksum="654398A7E3F0EDEB" modified="2018-12-05" version="1">MSPGAVLEVAGRDGGEEVASCHQMSPEKAKHYVDESLSIARRGGGDRDYVFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VU59</accession>
    <name>A0A392VU59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011272692">
        <property type="protein sequence ID" value="MCI91467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VU59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7250" checksum="04415AD5DC42B36F" modified="2018-12-05" version="1" fragment="single">VSPAPSIEIVKEKRGRDEDLEDVISRKNPKLDAAGGSAAGLHRLTPGQPAGDFILPPAFGHTSLFDGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VV52</accession>
    <name>A0A392VV52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011282762">
        <property type="protein sequence ID" value="MCI91807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VV52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="15"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4387" checksum="A5F8269DEDD27A2C" modified="2018-12-05" version="1" fragment="single">MVYSLVVQEESHHTSLSVSDDSSSLLNAVQRSQGRGKGPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW92</accession>
    <name>A0A392VW92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011252083">
        <property type="protein sequence ID" value="MCI90720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3961" checksum="2B82C8FBDAA4F495" modified="2018-12-05" version="1" fragment="single">QRSILWWLYPLVKLNTLQHAMQPVKVYGYNHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZY1</accession>
    <name>A0A392VZY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011317619">
        <property type="protein sequence ID" value="MCI93023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2471" checksum="84C880586602DC70" modified="2018-12-05" version="1" fragment="single">TQPPSLHRGRNGATPDAVTLLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W092</accession>
    <name>A0A392W092_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011319631">
        <property type="protein sequence ID" value="MCI93113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W092"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4340" checksum="D2422FD532F57863" modified="2018-12-05" version="1" fragment="single">GEVIVIKKEGFKIKETGKTGNSSGERIVPETEHTQLTQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2M2</accession>
    <name>A0A392W2M2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011362750">
        <property type="protein sequence ID" value="MCI94666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2M2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5668" checksum="06DF25AE7EDB461F" modified="2018-12-05" version="1" fragment="single">MEDVDDTKSVRGSDSYGFTREQYTQLVNLLQASNTSNAASSSKVNIASGHVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3H1</accession>
    <name>A0A392W3H1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011371175">
        <property type="protein sequence ID" value="MCI94946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3H1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3872" checksum="6E5C20955544223E" modified="2018-12-05" version="1" fragment="single">MTTTPTVVIWMNESSVVAMVLVLNEDSMVLVKDFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6T5</accession>
    <name>A0A392W6T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">WRKY transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011388266">
        <property type="protein sequence ID" value="MCI95483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4339" checksum="67C03E0607CCA238" modified="2018-12-05" version="1" fragment="single">MSSSSSSVANPPSNGFENEMQMVLVTTPENSSISIGDDDFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAN4</accession>
    <name>A0A392WAN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011439679">
        <property type="protein sequence ID" value="MCI97306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="5975" checksum="38CCF47864D38F9C" modified="2018-12-05" version="1" fragment="single">MTDLYLSENPFKTSNVESNVAASGTSEIVGNIDATVKASETLGSDKPKSVENLGKDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WCQ9</accession>
    <name>A0A392WCQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011459683">
        <property type="protein sequence ID" value="MCI97956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WCQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5416" checksum="3805496F99124C91" modified="2018-12-05" version="1" fragment="single">VEVLAEPLELRRGLLDALSSGVLGRFEAVVTAVFLLLEEEGARGTSSENAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX90</accession>
    <name>A0A392MX90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021938">
        <property type="protein sequence ID" value="MCH92121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5753" checksum="1365FBAD8B696349" modified="2018-12-05" version="1" fragment="single">RRVKDFEERRELEKKAEEYLQSRVDDGVEESEEDKRMRVRKELEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDE7</accession>
    <name>A0A392NDE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034729">
        <property type="protein sequence ID" value="MCH97353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17550" checksum="A6906FA9391EFDF6" modified="2018-12-05" version="1">MLASEFSDHYRYSVQMLEEAIATLIAQSEVTLPNRGAKLRTRMKSSSSLPKPHLADIFINLPPNLRCIYDNLEKDFRFYVECLKLDGGNSELKSNVEGVMLKIRKLCVDSSLVELEETPVTQFLEGICSVLGGYPQCTTTVGFGVTQPSAVLQEMRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMI5</accession>
    <name>A0A392NMI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045118">
        <property type="protein sequence ID" value="MCI01071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF183">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="178"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="51"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI01071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="225" mass="25502" checksum="6E3BEC4BE293B5AC" modified="2018-12-05" version="1" fragment="single">CTSFTSPARDKITFDNSMADVAISIVASLVERLLGPAIREGKCFLCVNKFIGDLENEKKELVIERDNLLDRVEQAKHRTEEIEKPVEMWLNDVKNLLEQVEDLEQMMRANTSCFQGQCPTWKRYRLCKQIVKKIELIGKFKGKSNIQPFSHRAPLPGIQYPSSENFIYFESTKVANSELLEALQDDDIYMIGVYGMGGTGKTTLVTEVAKKVEASKIFDKAILVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTN8</accession>
    <name>A0A392NTN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proteasome assembly chaperone 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049359">
        <property type="protein sequence ID" value="MCI02519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043248">
        <property type="term" value="P:proteasome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016562">
        <property type="entry name" value="Proteasome_assmbl_chp_2_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12970">
        <property type="entry name" value="PROTEASOME ASSEMBLY CHAPERONE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12970:SF1">
        <property type="entry name" value="PROTEASOME ASSEMBLY CHAPERONE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0647">Proteasome</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12435" checksum="CC77CEE856B138D6" modified="2018-12-05" version="1" fragment="single">MADFIAGSGKKHIIILSSLDFGKWQKVDMSSGLQIYYLSSANSNGADENCEQLGWKKLQDYDPSQKHWKYLNDLAEGNATPEDTISIEDELEEENYYASLPFAALFSFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYJ2</accession>
    <name>A0A392NYJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056648">
        <property type="protein sequence ID" value="MCI04827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5397" checksum="6E12BD16914D6364" modified="2018-12-05" version="1" fragment="single">VYEGEGYLFEELVSDLRALESFAREVNCFCPSVVSQIRAALTASDAIAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2D1</accession>
    <name>A0A392P2D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060073">
        <property type="protein sequence ID" value="MCI05884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="102"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="27657" checksum="9162A84CEB087F67" modified="2018-12-05" version="1" fragment="single">MLRACVLEDGGTWSKYLHLIEFAYNNSYHYSIGMAPYEALYGRKCRTPLCWTEVGDRGVLGPEIIQETTLKIKSVQEKMKIAQSRQKSYADHGRRPLEFDEGDHVFLRVTPKLGLRGVFKNKKLCPRYIGPYQIIKRVGPVAYQLALPPSMSGMHDVFHVSQLRKFIPDPFKPVELESIDLKPDLTYXPDPVRXVDXDVKVLRTKRIPIVKVVWDQSPNGEYTWELESEMLKNYPYLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P336</accession>
    <name>A0A392P336_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060943">
        <property type="protein sequence ID" value="MCI06154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P336"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5624" checksum="7CB5BF994AD00E76" modified="2018-12-05" version="1">MSNTMSSITLSIVGSWDKWRLLPAVRVIMEDNGGCASKPILRSWLFLPASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7M3</accession>
    <name>A0A392P7M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copper-transporting ATPase PAA2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065278">
        <property type="protein sequence ID" value="MCI07410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043682">
        <property type="term" value="F:P-type divalent copper transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055070">
        <property type="term" value="P:copper ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43520">
        <property type="entry name" value="ATP7, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43520:SF19">
        <property type="entry name" value="COPPER-TRANSPORTING ATPASE PAA2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8378" checksum="D7C68F5356DA0EAE" modified="2018-12-05" version="1" fragment="single">VIDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGLLLPQFDFAMTPSLSGGLMAMSSILVVSNSLLLKLHGSQTSGNGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7R3</accession>
    <name>A0A392P7R3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein 35A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066798">
        <property type="protein sequence ID" value="MCI07824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7R3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005770">
        <property type="term" value="C:late endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030906">
        <property type="term" value="C:retromer, cargo-selective complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042147">
        <property type="term" value="P:retrograde transport, endosome to Golgi"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005378">
        <property type="entry name" value="Vps35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11099:SF0">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11099">
        <property type="entry name" value="VACUOLAR SORTING PROTEIN 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03635">
        <property type="entry name" value="Vps35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="13283" checksum="DEAA79826B006F43" modified="2018-12-05" version="1" fragment="single">MIGKDADTVSDAVEFVLQNFTEMNKLWVRMQHQGPSREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEH4</accession>
    <name>A0A392PEH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gamma-tocopherol methyltransferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076478">
        <property type="protein sequence ID" value="MCI10498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025774">
        <property type="entry name" value="PiNMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591:SF81">
        <property type="entry name" value="MAGNESIUM PROTOPORPHYRIN IX METHYLTRANSFERASE, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51581">
        <property type="entry name" value="SAM_GTMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="SAM motif III" evidence="4">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI10498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9209" checksum="B268F838190F5C67" modified="2018-12-05" version="1" fragment="single">MESGEHMPNKAKFVGELVRVAAPGGTIIIVTWCHRDLRPDEKSLQPWEENLLKKICDSFYLPEWCSTAEYVKLLETMSLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK66</accession>
    <name>A0A392PK66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082414">
        <property type="protein sequence ID" value="MCI12017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF212">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="15880" checksum="FBF0AC42656EE364" modified="2018-12-05" version="1">MRAKISDLGLSRAFANDNHISTKCLAGSYGYVDPETRKFSIKGIVDQRLQGEYNTDSAWKLIEIAMSCLCQFATQRPDIKQIISELKDCLPLEMSFERSXNHGRNLSVKGSIQIEINETPLFFASGLVTVFKNHELETKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLG1</accession>
    <name>A0A392PLG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">tRNA (Cytosine(34)-C(5))-methyltransferase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084885">
        <property type="protein sequence ID" value="MCI12612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057286">
        <property type="entry name" value="PUA_NSUN2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25378">
        <property type="entry name" value="PUA_NSUN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA cytosine-C(5)-methyltransferase NSUN2-like PUA" evidence="2">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10024" checksum="97F0F1D0B7D9B7BF" modified="2018-12-05" version="1">MPGCCVVVLGEGNKTVAEALQVNESSIAIVCWKGGASLTVMVTSIECQELLERLLMRSDKVTEKGSSIQEEEPSNNAEDVEHESNGNSQDVEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNI2</accession>
    <name>A0A392PNI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein ECERIFERUM 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086495">
        <property type="protein sequence ID" value="MCI13010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="entry name" value="GHMP Kinase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="Ribonuclease PH domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exoribonuclease phosphorolytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5553" checksum="35F256A6A83D722B" modified="2018-12-05" version="1" fragment="single">MTGRMTATLNANGDVCAIQKPGEQGIFQQIIMHCLKLAHVKAGDITAKIKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRW8</accession>
    <name>A0A392PRW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090826">
        <property type="protein sequence ID" value="MCI14066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7807" checksum="664BA679D1240B14" modified="2018-12-05" version="1" fragment="single">LTEEVQIKRGLKQGDPIAFLLFLLVAEGLGGLMRKAMEINRFRSFLVGGGGGKADVNSSICGRYFVYRGGNGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTU4</accession>
    <name>A0A392PTU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protease Do-like 8 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095656">
        <property type="protein sequence ID" value="MCI15254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051201">
        <property type="entry name" value="Chloro_Bact_Ser_Proteases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343">
        <property type="entry name" value="PEPTIDASE S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343:SF3">
        <property type="entry name" value="PROTEASE DO-LIKE 8, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI15254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7509" checksum="3E6D684739D63F77" modified="2018-12-05" version="1" fragment="single">MVEAPKEILKPIKVGESSSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSKTGVTIGGGIQTDAAINPGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUF6</accession>
    <name>A0A392PUF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092860">
        <property type="protein sequence ID" value="MCI14555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="18639" checksum="D1BB10E1AAE897EE" modified="2018-12-05" version="1">MEYMNQIFHSFLDRFVLVFIDDILIYSKSEEEHEEHLRIVLQVLKEKKLYAKLSKCEFWLKEVNFLGHIISRGGIAVDPAKVDAVSHWGTPESVSEIRSFLGLAGYYRRFIEGFSKLALSLTQLTRKDQAFVWNEDCEKSFQELKKRLTIAPVLILPDAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYT7</accession>
    <name>A0A392PYT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NBS resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102074">
        <property type="protein sequence ID" value="MCI16709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8655" checksum="733E1F572A1C0DD1" modified="2018-12-05" version="1" fragment="single">MGKENKPPTACDLASKLGSIWKDFQPWRPISLGHGFFEFQFDSLKDKPKAWSVGTYNLRPGLLRLSDHGLTARILAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZ63</accession>
    <name>A0A392PZ63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102685">
        <property type="protein sequence ID" value="MCI16839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZ63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14821" checksum="4A36A67C08F86AB8" modified="2018-12-05" version="1">MEIRSLVSFIIQRSENLVDCLVDFESPNLSTENLVDFQSLTKNLVDCLVVDCLVDCLVDFQSLDGRTENLMDFQSLRLRNENLVDCLVVDCQHLICIKISINIYCIKIVEEKDLLAPIALPCCGLPTSNMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q485</accession>
    <name>A0A392Q485_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MACPF domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109737">
        <property type="protein sequence ID" value="MCI18346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q485"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009626">
        <property type="term" value="P:plant-type hypersensitive response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000031">
        <property type="term" value="P:regulation of salicylic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044663">
        <property type="entry name" value="CAD1/NSL1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199">
        <property type="entry name" value="MACPF DOMAIN-CONTAINING PROTEIN CAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199:SF2">
        <property type="entry name" value="OS02G0475300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13766" checksum="D26256E7E3A0441C" modified="2018-12-05" version="1" fragment="single">MSRGSDDDESSDQFAEPIRWKRFAHVCTSVVKYDPNWLHESNSTGVYIVTGAQLISKGNWPRNVLHLRLLFTHIPNCSIRKTEWDAAPETSKKSSFFTNLSTTFSFTQQSVTAKQKQAQQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q824</accession>
    <name>A0A392Q824_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120035">
        <property type="protein sequence ID" value="MCI20471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q824"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="22502" checksum="CF3865E96847D5AD" modified="2018-12-05" version="1" fragment="single">VHTDQSELNTDDLSTDPAVQIALQNAGLLSDSPPSSPHKNKEIHNENEMSGPDDILELDSHPELDIYGDFEYDLEEDDYIGASVTNIPNLTQEQSEPKVKLVFSTTSLKKTNNASDSADIMGSENNEVPGDASRSPNCHSDAVHRDSTIDAEIGQPSASSGLQPCEGAVEPVDSEFEELYGPDKEPLIKKFPDGELLSPHGEGKTETQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9J9</accession>
    <name>A0A392Q9J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121824">
        <property type="protein sequence ID" value="MCI20814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9638" checksum="2985A441B919CFC3" modified="2018-12-05" version="1" fragment="single">MEGSSSSXXXXXXXXXXXXXXSKKTCFTKNKTINIDYDDFELVMEQPVDFEALKTNGYDVKKFFKNQDREYKNKVAEDPENNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QA00</accession>
    <name>A0A392QA00_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Amine oxidase</fullName>
            <ecNumber evidence="2">1.4.3.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <cofactor evidence="2">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="2">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <text evidence="1">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1 2">Topaquinone (TPQ) is generated by copper-dependent autoxidation of a specific tyrosyl residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the copper/topaquinone oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.-" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010123815">
        <property type="protein sequence ID" value="MCI21213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QA00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008131">
        <property type="term" value="F:primary methylamine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009308">
        <property type="term" value="P:amine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.20">
        <property type="entry name" value="Copper amine oxidase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049948">
        <property type="entry name" value="Cu_Am_ox_TPQ-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000269">
        <property type="entry name" value="Cu_amine_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015798">
        <property type="entry name" value="Cu_amine_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036460">
        <property type="entry name" value="Cu_amine_oxidase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638:SF87">
        <property type="entry name" value="AMINE OXIDASE [COPPER-CONTAINING] ALPHA 2, PEROXISOMAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638">
        <property type="entry name" value="COPPER AMINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01179">
        <property type="entry name" value="Cu_amine_oxid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49998">
        <property type="entry name" value="Amine oxidase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01164">
        <property type="entry name" value="COPPER_AMINE_OXID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0801">TPQ</keyword>
    <feature type="domain" description="Copper amine oxidase catalytic" evidence="3">
        <location>
            <begin position="2"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="modified residue" description="2',4',5'-topaquinone" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600269-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI21213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6288" checksum="08AC82B282888DEA" modified="2018-12-05" version="1" fragment="single">YAGDIMWRHTEIAIPNEVITEVRSDVSLVVRAVSTVGNYDYVIDWEFKSSGSIKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QEG3</accession>
    <name>A0A392QEG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132093">
        <property type="protein sequence ID" value="MCI22741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QEG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10830" checksum="BB43FF30DAEFD490" modified="2018-12-05" version="1" fragment="single">ISTVTSAMPGAVVFGDYVIEGRHNNDIDSDDEEGALDAGNGDRNGRFQMGMEAMNFFLLLHAVRQGNDINSLSRRLRPDLGPDRRRRRREAHATMGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QFJ2</accession>
    <name>A0A392QFJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130818">
        <property type="protein sequence ID" value="MCI22500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QFJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27001:SF539">
        <property type="entry name" value="CALCIUM_CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27001">
        <property type="entry name" value="OS01G0253100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI22500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10074" checksum="8BA47DE18F4EC584" modified="2018-12-05" version="1" fragment="single">MDPAYISTSKLTTKSDIYSFGIILFELITAIHPHQNLMEYINLAAMEHDGIDEILDKQLVGKCNVVEVRQLAKIAHKCLHKSPKKRPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QI23</accession>
    <name>A0A392QI23_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Histone H2A</fullName>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="6">The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the histone H2A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136659">
        <property type="protein sequence ID" value="MCI23547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QI23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000786">
        <property type="term" value="C:nucleosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046982">
        <property type="term" value="F:protein heterodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00074">
        <property type="entry name" value="HFD_H2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.10">
        <property type="entry name" value="Histone, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009072">
        <property type="entry name" value="Histone-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002119">
        <property type="entry name" value="Histone_H2A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032454">
        <property type="entry name" value="Histone_H2A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032458">
        <property type="entry name" value="Histone_H2A_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23430">
        <property type="entry name" value="HISTONE H2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16211">
        <property type="entry name" value="Histone_H2A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00620">
        <property type="entry name" value="HISTONEH2A"/>
    </dbReference>
    <dbReference type="SMART" id="SM00414">
        <property type="entry name" value="H2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47113">
        <property type="entry name" value="Histone-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00046">
        <property type="entry name" value="HISTONE_H2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0158">Chromosome</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0544">Nucleosome core</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histone H2A C-terminal" evidence="8">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI23547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9249" checksum="04A8F7ECB29D4162" modified="2018-12-05" version="1" fragment="single">MEAAATTTSTTIGAGGRRGGNRKKAVSKSSKAGLQFPVLELAGNAARDNKKNRINPRHVCLAVRNDDELGKLLQGVTIANGGVLPNINP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QIQ1</accession>
    <name>A0A392QIQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010140513">
        <property type="protein sequence ID" value="MCI24263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QIQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17580" checksum="AD4938B1669D8337" modified="2018-12-05" version="1" fragment="single">MKAPEGTATEAIGASEFKESGKGKAVEATTSEEKSVSEKSRVNPTKKPRSTKKRAPKIQKRNIISDDEETEEDQPAFKRKISDPEKDQPASEDMDTDANTGNLNSINDNVPILQAQTSPISPSSNQPHSESNDDIDPSLLQQINVIHPPKIFDLPNITSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQF7</accession>
    <name>A0A392QQF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010150026">
        <property type="protein sequence ID" value="MCI25890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12123" checksum="772CFA9A865173CD" modified="2018-12-05" version="1" fragment="single">KPLKVIHAILGITDCPPLVVDTPVQTELCDPLLLIGLSALQSKINLVASGLRIHRFFKKKLVYQPPGESLVPPPPSHVKPPPGPLIKIFPFVQCECHCGVPNFFIALLQFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSH5</accession>
    <name>A0A392QSH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aberrant root formation protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156298">
        <property type="protein sequence ID" value="MCI26937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055105">
        <property type="term" value="F:ubiquitin-protein transferase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019516">
        <property type="entry name" value="Glomulin/ALF4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15430">
        <property type="entry name" value="GLOMULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15430:SF1">
        <property type="entry name" value="GLOMULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11949" checksum="73B0ABFBFB8526B2" modified="2018-12-05" version="1" fragment="single">CMGCLSHVKHGAALSVVWGHVSEEVAHAAKEDIIAVKDELRKYQIKRWHAIGTLKHALSFVNLPWELKKHTINFLLCITDGDICGNCDDEHSQWPSYLPNIFSALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QU66</accession>
    <name>A0A392QU66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160096">
        <property type="protein sequence ID" value="MCI27559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QU66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5160" checksum="C8F1722924F957E7" modified="2018-12-05" version="1" fragment="single">MRDRVESDIVAPKWYDYGDLVSYVSIVAEEVQNLRGSSGRQLKTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R065</accession>
    <name>A0A392R065_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173892">
        <property type="protein sequence ID" value="MCI29637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R065"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9713" checksum="C80B22FE32A89155" modified="2018-12-05" version="1" fragment="single">MNIIDNITVVLKIDNKSAINLAKNHVSHGKSKHIETMFHFLRDQVNKEKLSLEYCPTDNQQADIMTKAVKRYQFLKLRREMGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0Y8</accession>
    <name>A0A392R0Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010178076">
        <property type="protein sequence ID" value="MCI30238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0Y8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051714">
        <property type="entry name" value="Znf_CCHC_NABP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23002">
        <property type="entry name" value="ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="74"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="93"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="113"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="36"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI30238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16870" checksum="400275319726126D" modified="2018-12-05" version="1" fragment="single">PDIKHFIGFSEIRDFATLVAKSRICDEDGKAKSNFYKAMSDKRGRGQDRGKPYDNKGKRGVESSGGRKKNDGQCFRCGGMGHKSFECPKKEDKCFKCGRLGHIADVCREKMVCFNCGEEGHKSPACKKPKKTIGKVFALSGDNADQVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R125</accession>
    <name>A0A392R125_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoprotein phosphatase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010171239">
        <property type="protein sequence ID" value="MCI29245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R125"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15617" checksum="92464F74686B47F5" modified="2018-12-05" version="1" fragment="single">MCIANCKSLKEIVAKEGDEYNYENEEDDGDDELGDGDEGEFKDGDDNEHESETEDGDGDTSEDESEDEVGGEGEEESVDEDEARIIFKQLKILKLGLLPKLGSFYSGSSTLKFPSLEQMVFTQCHNMKIFRLGDKVSKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R678</accession>
    <name>A0A392R678_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-xylosidase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010189632">
        <property type="protein sequence ID" value="MCI31739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R678"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="15934" checksum="252B8E35A43F4486" modified="2018-12-05" version="1" fragment="single">ISKDARMTPFSLIVTFPAGAVEGEAKGNLFLDDDELPEMKLGNGYSTYIDFHASVKEGNVKVWSQVQEGKFALDKGWIIDTIHVLGLNGSGATATIEIDGTLSNVTIDTTEQNYLYGQVDGEKNIVMAGMKGLNIPVGKSFSMTWKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6Z7</accession>
    <name>A0A392R6Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186178">
        <property type="protein sequence ID" value="MCI31305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11662" checksum="CD4B21627E9D5A64" modified="2018-12-05" version="1" fragment="single">HFSCLCVVELGSLQICIFLHFPEVYVLGAARPAVWCNAPCFLSFWIFLLASARRAWVGGATRSLELYRVVLLLIVARRAGVICAARRAALFRAFWLLVPALRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7H4</accession>
    <name>A0A392R7H4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010196801">
        <property type="protein sequence ID" value="MCI32568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7H4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7885" checksum="10039F7B44F6695F" modified="2018-12-05" version="1" fragment="single">MENNNTHKQCDYVVGTSSGINENVVNGSEGALIDLASAATVEQNIVNGTISPEVDLARSVSELTIVVNKALQEIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RA26</accession>
    <name>A0A392RA26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010201682">
        <property type="protein sequence ID" value="MCI33119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RA26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5733" checksum="E96DF2D4BAC4A0B2" modified="2018-12-05" version="1" fragment="single">PISRPEPQILGFLAERGVSSLSELVASTRQGSPVTLKLSAFGRQLLAERGLARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGX5</accession>
    <name>A0A392RGX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010219638">
        <property type="protein sequence ID" value="MCI35040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10824" checksum="AF7EFE91C337B71E" modified="2018-12-05" version="1">MAEHRLMTDAQFAEMEERRTKQFDRIDFLLEALLQKHNCSQSSFRGAMNSCQETLRQPFRSNHISLLLNRRENLISAWQNCHDKSSNRVQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RI91</accession>
    <name>A0A392RI91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010228788">
        <property type="protein sequence ID" value="MCI35957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RI91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9189" checksum="463DC77DB56E3059" modified="2018-12-05" version="1" fragment="single">YKLQDAVVPLGIRHFQVLVEKFQEIEDMRNKRMNRQGNFSAGGPSHPSNHNQNRGRQWTKPYNHPQNNQGYNRSANQGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJG7</accession>
    <name>A0A392RJG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010226721">
        <property type="protein sequence ID" value="MCI35755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6938" checksum="A2A6F0BE5CD40403" modified="2018-12-05" version="1" fragment="single">KQASESNTTSSQVAKEKRSKKKHEKQETTVEEDEPTHPDNEEKKEKKKAKKNKKEKEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJW7</accession>
    <name>A0A392RJW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative IMP dehydrogenase/GMP reductase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010234574">
        <property type="protein sequence ID" value="MCI36527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13120" checksum="9C4C0418658CC334" modified="2018-12-05" version="1" fragment="single">RGRTVVNAWDHEAGYMMWFYIVSHPILCPVQAAEEPPRPPNLEVLIAEQETNNVPDTLEICRDVRNEIQMSLEAGEAEEGTPIYDTMHRLMGFVEPALTYRLRRRGRGRQFAPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSF3</accession>
    <name>A0A392RSF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010256747">
        <property type="protein sequence ID" value="MCI38515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="51"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12417" checksum="673C77530DD86386" modified="2018-12-05" version="1" fragment="single">GRHLERSQKRQGVWMKLRRAQPQMPKDCRLEVRERHPIAQLLECNLIHGDNTPTSRSTNPSPTTRNTDLPVLGRRGLYIREKIFGDTLAVCERGHCVSRFVSYPRII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVX9</accession>
    <name>A0A392RVX9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Extensin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278380">
        <property type="protein sequence ID" value="MCI40322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005199">
        <property type="term" value="F:structural constituent of cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006706">
        <property type="entry name" value="Extensin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36586">
        <property type="entry name" value="PROLINE-RICH EXTENSIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36586:SF26">
        <property type="entry name" value="PROLINE-RICH EXTENSIN-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04554">
        <property type="entry name" value="Extensin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Extensin" evidence="2">
        <location>
            <begin position="2"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="102"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI40322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="12819" checksum="B60B1102A1C700E9" modified="2018-12-05" version="1" fragment="single">PPSPTYEYKSPPPPTPVYKYTSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSPTPHTPYYYKSPPPPTASPPPPYHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYC7</accession>
    <name>A0A392RYC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010287684">
        <property type="protein sequence ID" value="MCI41084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11562" checksum="3DB0200B7560AD08" modified="2018-12-05" version="1" fragment="single">MHTPKSDPKDSNAVDRSQEVLIPTMQALMADKSKKFDETNNMHVTPDNFRRASVHVISKTKKFKKTPKRSIKRKRFKWRIRKEKLKSDSEDMCSWLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S323</accession>
    <name>A0A392S323_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010315444">
        <property type="protein sequence ID" value="MCI43301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S323"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6449" checksum="60F0DBBC2745E523" modified="2018-12-05" version="1">MRAALVTPARRAANRTKTGQQPQCCAQRRPPLHTAQLTEQNQQHNTTTARSAAQPARSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3B0</accession>
    <name>A0A392S3B0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010310716">
        <property type="protein sequence ID" value="MCI42922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3B0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="6693" checksum="B0225C79AB047E0A" modified="2018-12-05" version="1" fragment="single">GPEAMTSSGLGGLGLEGIVGMSEPAGVGKAPPGEGKSGEISGDNTWKGESVDGEGFVFVVGEEVESVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S569</accession>
    <name>A0A392S569_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010318835">
        <property type="protein sequence ID" value="MCI43547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S569"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4731" checksum="93A2B339CD997FB5" modified="2018-12-05" version="1" fragment="single">METADMDVGYESTDAEDEPTEEHNINNEDDNAQLGPRVRKPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S796</accession>
    <name>A0A392S796_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010334997">
        <property type="protein sequence ID" value="MCI44771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S796"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2489" checksum="97E248C0DA2D22B8" modified="2018-12-05" version="1" fragment="single">VRNAPDEAAQRAISRASLKHPSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S851</accession>
    <name>A0A392S851_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010339069">
        <property type="protein sequence ID" value="MCI45061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S851"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5764" checksum="EC19D17054777546" modified="2018-12-05" version="1" fragment="single">YEQYGAHMRAQEEQRAAASASAAAASHGSPFFTLGELGMDDSPGFQNFMDPPASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8R6</accession>
    <name>A0A392S8R6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010341171">
        <property type="protein sequence ID" value="MCI45238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8R6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5314" checksum="F71DB6A89454C7E4" modified="2018-12-05" version="1" fragment="single">ESQPSPAHNLNTGAAEGCEVESDAADVVVLEVVVVVVLLLLPVVMTKGWPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDB2</accession>
    <name>A0A392SDB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010363886">
        <property type="protein sequence ID" value="MCI46868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6424" checksum="71719B1289411AB5" modified="2018-12-05" version="1" fragment="single">DAEAGGSRSRARSRLGQAPVAYAQDDFDADQFLNNDADYDAEPEAPQQPPQQPPQQPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEX5</accession>
    <name>A0A392SEX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010357086">
        <property type="protein sequence ID" value="MCI46406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9382" checksum="847214CDCEBE0724" modified="2018-12-05" version="1" fragment="single">MFWNLCVAQGHMARCVVHSDSNRNSLFQLRGAPSSMARCAGKNMKQNCFLEVARRAGLVARRVVEKGSTQIWFWKLRVAQDGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHP7</accession>
    <name>A0A392SHP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010379848">
        <property type="protein sequence ID" value="MCI47982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3845" checksum="5BC2B18DB8C6CC34" modified="2018-12-05" version="1" fragment="single">MRKARASQSGARAREKRELVGEGLEELEDSSRIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJI4</accession>
    <name>A0A392SJI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010385772">
        <property type="protein sequence ID" value="MCI48364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6308" checksum="9C70AEBE49D72DDC" modified="2018-12-05" version="1">MLRRLDTVRDLLKDLMISDDVPIDSRVYQVLANAVKVTRNLNFVRRDGGPGSSSHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJL3</accession>
    <name>A0A392SJL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010386175">
        <property type="protein sequence ID" value="MCI48394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5170" checksum="E43F8C4B08134A58" modified="2018-12-05" version="1" fragment="single">MVVGGKIFMKAEGIQGIPRDEGEVQDGESSRVVNVITIDLKAKWRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJN7</accession>
    <name>A0A392SJN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010382514">
        <property type="protein sequence ID" value="MCI48165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="1">
        <location>
            <begin position="3"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11810" checksum="09559CFDABFAF039" modified="2018-12-05" version="1" fragment="single">EVCGMLEDVYVPKKRNKRGEPYGFVKFSNVRDVTKLTSALNAVYFGHYRIRARVASFDRADTGTGRRPGPRRRGFIKEANDLVWSAGHINTLTQDIHRGDVDNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNV9</accession>
    <name>A0A392SNV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010411449">
        <property type="protein sequence ID" value="MCI50097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11156" checksum="EAD6D563F2940CB0" modified="2018-12-05" version="1" fragment="single">TLTKYPARCAVLPCALRQHQKKTTRKHNYTARCAGPAVRCANARRLNCHCTNALRVAPIQAARCTKNRKLNRPHSLNYALHHMHLRVAPDTEHEGIVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ22</accession>
    <name>A0A392SQ22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010414413">
        <property type="protein sequence ID" value="MCI50304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7548" checksum="D2872F4BDFA75C4E" modified="2018-12-05" version="1" fragment="single">LREAPTDDNGGEETEDSAKERLIGFAATGTGSSSRHFPLPVGNTGDSLFFFKAALKTMPPRIRGLLMRGPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRK8</accession>
    <name>A0A392SRK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Helicase protein MOM1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010418155">
        <property type="protein sequence ID" value="MCI50550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7257" checksum="96CE04A1181D5DF4" modified="2018-12-05" version="1" fragment="single">MTENTLSPVSSISRPVNLVEPQEQVHLKPLSSVESPPGPVIDLPANQSNHVSMVTEPIEKMQQLPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSL2</accession>
    <name>A0A392SSL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010428423">
        <property type="protein sequence ID" value="MCI51204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5719" checksum="5D1CE662025DEFFA" modified="2018-12-05" version="1" fragment="single">VLKSNVDDPRLQPRDDPTVVSESMVPRRVRTAPCIESLPSKCGQVAGPVEQCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STK9</accession>
    <name>A0A392STK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010443497">
        <property type="protein sequence ID" value="MCI52181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6791" checksum="7EA613D40EA191FD" modified="2018-12-05" version="1">MHCIGAGMKGNIFFRKDDDDGDNEDDDDEDDDDGDDELVCLDLTTGVIHNIDVKAESWRAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUV1</accession>
    <name>A0A392SUV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010440549">
        <property type="protein sequence ID" value="MCI52004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9721" checksum="5CC5144683BB6AC1" modified="2018-12-05" version="1" fragment="single">IAKILKKMKDGAPMPQEIVEIDEETESDEGIVVRVQTIADRVKMYKSQKVEIPRNTGTGKKELKKKRKASYWGKNIEKEAGDNFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SXS5</accession>
    <name>A0A392SXS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine carboxypeptidase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010453907">
        <property type="protein sequence ID" value="MCI52855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SXS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7677" checksum="63C5672EA5A54820" modified="2018-12-05" version="1" fragment="single">KANQADRLDKLILSRSSQIPPKTFTWEVEDTLNTQSSSAAAYVAAPQEGLRQADKIVTLPGQPYGVNFDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZI0</accession>
    <name>A0A392SZI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010470790">
        <property type="protein sequence ID" value="MCI53902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017320533" evidence="1">
        <location>
            <begin position="31"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8726" checksum="A62B387F28DF5EC1" modified="2018-12-05" version="1" fragment="single">CGVLTVLSAVAMRDIVILVVMLKTNAGAVAKRGKKIVTGEEMKGRDRSMANEGQEDGGFLRWRRLSRLERNRVRKEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T142</accession>
    <name>A0A392T142_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010484036">
        <property type="protein sequence ID" value="MCI54719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T142"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9502" checksum="DF859295F0E73025" modified="2018-12-05" version="1" fragment="single">GVGWQHQRQGRVNQERVEVVHSLEVSGCDPNLLGKLLVAETSKVNNAIVGKEDDFLDVSRAIVVVPVPTDEILDIVSPVGCQSDLANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T411</accession>
    <name>A0A392T411_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FMN binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010497495">
        <property type="protein sequence ID" value="MCI55502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T411"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4873" checksum="A46D05634F1E4CA6" modified="2018-12-05" version="1" fragment="single">RKWVGWGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMGQVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7M8</accession>
    <name>A0A392T7M8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510222">
        <property type="protein sequence ID" value="MCI56305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="15" mass="1358" checksum="83B3F36AE965E483" modified="2018-12-05" version="1" fragment="single">MFGSDSIDSGTGGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T932</accession>
    <name>A0A392T932_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010521185">
        <property type="protein sequence ID" value="MCI56957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T932"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5496" checksum="791F464BED078E9B" modified="2018-12-05" version="1" fragment="single">LFLATAKRNRRHIYSRPVPGRSQATPGRSTQQKRAPATSNCAWRKSLCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9H1</accession>
    <name>A0A392T9H1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010518705">
        <property type="protein sequence ID" value="MCI56810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9H1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8219" checksum="466EAA4D22266AB0" modified="2018-12-05" version="1" fragment="single">MPFSFSRMIPAPAPDGPEAQSTKIVHLSAPSFEEARAVISATKSAKTCALRAFLLSKRMSNSESSRDHLSILPAMSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB21</accession>
    <name>A0A392TB21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Inducer of CBF expression 2</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010540161">
        <property type="protein sequence ID" value="MCI58092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054502">
        <property type="entry name" value="bHLH-TF_ACT-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051358">
        <property type="entry name" value="TF_AMS/ICE1/BHLH6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945:SF129">
        <property type="entry name" value="TRANSCRIPTION FACTOR SCREAM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945">
        <property type="entry name" value="TRANSCRIPTION FACTOR SCREAM2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22754">
        <property type="entry name" value="bHLH-TF_ACT-like_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant bHLH transcription factor ACT-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI58092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6587" checksum="E2CF7DA69683807C" modified="2018-12-05" version="1" fragment="single">VEVREREGGTVDIHVSCTHKSGILHLTMKALDSLGLDVHQAVINCFNGFSIDVFKAKVYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TD05</accession>
    <name>A0A392TD05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010546399">
        <property type="protein sequence ID" value="MCI58454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TD05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7061" checksum="92B574FDBA3D6553" modified="2018-12-05" version="1" fragment="single">FCDKWRAWMRVCVCSGNMSVLVNGCPTEEINIKCGLKQGDPLAPHLFLLVVEGLGALMRKAVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEQ3</accession>
    <name>A0A392TEQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010553241">
        <property type="protein sequence ID" value="MCI58877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEQ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6562" checksum="F429BA2291432024" modified="2018-12-05" version="1" fragment="single">MTHPSSAPTDDRTAVLVQAVTATIKVAAEGADSAVVPGLMVHLGPLNNGSSPSIPPGLLGVGPHLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG43</accession>
    <name>A0A392TG43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575862">
        <property type="protein sequence ID" value="MCI60129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6000" checksum="BA638B5771AAD19A" modified="2018-12-05" version="1">MLVQRKDHQEKSLRRPTMVADKENSKKCGMQLTANPYRGKALAAKSLGGAELEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGJ5</accession>
    <name>A0A392TGJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gibberellin 2-beta-dioxygenase 8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010578064">
        <property type="protein sequence ID" value="MCI60241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4590" checksum="0F2F85A2863B9C41" modified="2018-12-05" version="1" fragment="single">IESNATPPLYRKFTFGEYKEQTLKDLKEGGDKVGLSRFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TH95</accession>
    <name>A0A392TH95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010582878">
        <property type="protein sequence ID" value="MCI60511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TH95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9111" checksum="E26F67E1DC783694" modified="2018-12-05" version="1" fragment="single">NLTAGGDAVAQELTEVVAENLEVPRPVCCKKSKVSPPSFWDADFNSLGFIEEQFEKYGDPSSFSQTTYEELRKMSLSYQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI45</accession>
    <name>A0A392TI45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010586108">
        <property type="protein sequence ID" value="MCI60678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4023" checksum="DDF8D82F42144473" modified="2018-12-05" version="1" fragment="single">MLRNREIASVKVVWGEPAGENATWELESKMKDSYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL14</accession>
    <name>A0A392TL14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010603315">
        <property type="protein sequence ID" value="MCI61638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5380" checksum="7C2DC2697F73A921" modified="2018-12-05" version="1" fragment="single">MKLLNINEENKALWVKRCGKNRKVATRSKFGVNKEPIKKPSREVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP19</accession>
    <name>A0A392TP19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010627870">
        <property type="protein sequence ID" value="MCI62921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="12" mass="1516" checksum="D31FDB09A2105B02" modified="2018-12-05" version="1" fragment="single">MPRLVEIEMNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQ06</accession>
    <name>A0A392TQ06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010609208">
        <property type="protein sequence ID" value="MCI61925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQ06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2153" checksum="65A6B934082C6DEF" modified="2018-12-05" version="1" fragment="single">VAACRASLAEQNTIPPTNALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0P6</accession>
    <name>A0A392U0P6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679475">
        <property type="protein sequence ID" value="MCI65645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0P6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="11"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6644" checksum="2CEF8AFEF0A7694D" modified="2018-12-05" version="1" fragment="single">MDPAPFKACLEAILDRKMVKRGRIAATKVLVKWQKLPAERATWEFYYDLLKQFPNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U1Y4</accession>
    <name>A0A392U1Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010708919">
        <property type="protein sequence ID" value="MCI67098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U1Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7408" checksum="A43F6111886E74A1" modified="2018-12-05" version="1" fragment="single">MPIRNPTSRGHKEFLAAINTKQHFTSVEHPQTNGQAEAANMVILRGLKRRLDKNKKKWVEELQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7G4</accession>
    <name>A0A392U7G4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010734461">
        <property type="protein sequence ID" value="MCI68326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7G4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5018" checksum="4E4EF918A851B29F" modified="2018-12-05" version="1" fragment="single">DRGRVFVTTEERHFDHGNLDSEVSHVMQVTTGTRTGRCEDGSLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8C8</accession>
    <name>A0A392U8C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010748289">
        <property type="protein sequence ID" value="MCI69054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4927" checksum="200428DA759A191A" modified="2018-12-05" version="1">MKFSSWKTLMMNDEEDINIDEDDINIDDLYEVLSMEEGMPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKN5</accession>
    <name>A0A392UKN5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010833064">
        <property type="protein sequence ID" value="MCI73194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="44"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7685" checksum="98A8961DFE4D39FF" modified="2018-12-05" version="1" fragment="single">KQKKRKRIVKVKQEKVVEEKTYGNTLASGAEVPEAKSTEDKIATETTATEVVGTSGVKDSDKGKSSGVTTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMT7</accession>
    <name>A0A392UMT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010843549">
        <property type="protein sequence ID" value="MCI73660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8641" checksum="FF1719D941F66CB0" modified="2018-12-05" version="1" fragment="single">VDEEFLQTLIGSYVGILKKGVEAIALQMKLCMAGMQAVKVAEMGGSLVLFSREGSVDVGPPFNNLLWWDGLLDEIKPWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWX4</accession>
    <name>A0A392UWX4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010997655">
        <property type="protein sequence ID" value="MCI80526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWX4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6598" checksum="AAF222DB832FA30D" modified="2018-12-05" version="1" fragment="single">MANFKVRRVLVDPSSSVDIMYARTFETLQLTEHNLTPYVGSDLQGFNCTTTKPWGFVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY58</accession>
    <name>A0A392UY58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011003478">
        <property type="protein sequence ID" value="MCI80797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8031" checksum="60E7A97473E45673" modified="2018-12-05" version="1" fragment="single">MIARSIKHMITGPDTYIGHTFVIATLCHLQHVLTEEDTDEITSAERPLGRTFFQRAVRELQAAQAAASPQPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V1V6</accession>
    <name>A0A392V1V6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011039766">
        <property type="protein sequence ID" value="MCI82284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V1V6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8589" checksum="91A24DD59444C504" modified="2018-12-05" version="1" fragment="single">GGVAITWEMFKRKFWVKYFPADVRNMKVVEFLELKQGNMTVAEYAAKFESLSPFSPYYNTPEAEYDKCVKFES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V327</accession>
    <name>A0A392V327_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011050217">
        <property type="protein sequence ID" value="MCI82724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V327"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3799" checksum="F6F2244F4DD14342" modified="2018-12-05" version="1" fragment="single">GISVRNDDAPVSTGITASVPYVKRNGVSPVVECGVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7H5</accession>
    <name>A0A392V7H5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011085737">
        <property type="protein sequence ID" value="MCI84224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7H5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3476" checksum="CB2E995CE383AD12" modified="2018-12-05" version="1" fragment="single">MVVEELRKLQMVFAATPSSDIDSIVVARSWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V829</accession>
    <name>A0A392V829_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011090814">
        <property type="protein sequence ID" value="MCI84434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V829"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4626" checksum="455CAD8671972A70" modified="2018-12-05" version="1" fragment="single">MKQQEYISRARAPRTKGCAARHFQELQLHHALRPAPRASN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8B8</accession>
    <name>A0A392V8B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Surfeit locus protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093060">
        <property type="protein sequence ID" value="MCI84524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4849" checksum="B28BAC0D21DF7FF1" modified="2018-12-05" version="1" fragment="single">MDENKPTTADSAEKVKKDATEASKELVFGNVKLQDGEVQGKKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFE6</accession>
    <name>A0A392VFE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011133562">
        <property type="protein sequence ID" value="MCI86183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5768" checksum="9E2F757C1FB9B472" modified="2018-12-05" version="1" fragment="single">TSQLQLQAPNQSPAATAEYMPPSPPLVPPPPTPFGQPLSDHFIITNSSNFNPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHK4</accession>
    <name>A0A392VHK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011164764">
        <property type="protein sequence ID" value="MCI87387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4844" checksum="FD8583AF0D59A412" modified="2018-12-05" version="1" fragment="single">MDQMLERLAGKAYYCFLDGYSGYNQNVVDPADQENTAFTCPFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPZ2</accession>
    <name>A0A392VPZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011194880">
        <property type="protein sequence ID" value="MCI88510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5427" checksum="B1AEE0CE37762653" modified="2018-12-05" version="1" fragment="single">CFHGLMLENLDFEHDLAIVRAGTHFWVIVAERAGRQCSSWLASDPDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQS1</accession>
    <name>A0A392VQS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011202196">
        <property type="protein sequence ID" value="MCI88780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4766" checksum="D00671E8881D6ADC" modified="2018-12-05" version="1" fragment="single">MKRGTSKANAEEKKKSEKGTSTSKQSKAQKKLKFKQEESSDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSE1</accession>
    <name>A0A392VSE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011216983">
        <property type="protein sequence ID" value="MCI89340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5409" checksum="1F85695DF4B64966" modified="2018-12-05" version="1" fragment="single">MVNNTPLLLTPVSKPRFIQLTSTEMAERQEQGLCFNCDERFSRNHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VX25</accession>
    <name>A0A392VX25_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">peroxidase</fullName>
            <ecNumber evidence="3">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="10">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="3"/>
    <dbReference type="EMBL" id="LXQA011303402">
        <property type="protein sequence ID" value="MCI92517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VX25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31235">
        <property type="entry name" value="PEROXIDASE 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 14" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="13">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="4"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
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        <location>
            <begin position="6"/>
            <end position="11"/>
        </location>
    </feature>
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        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PIRSR" id="PIRSR600823-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI92517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5473" checksum="32082F835BABDECC" modified="2018-12-05" version="1" fragment="single">MHFHDCFVRGCDASVLIDGSNTEKTAIPNLGLRGYEVIHDAKEKLEAACP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VX29</accession>
    <name>A0A392VX29_9FABA</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
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            <taxon>Viridiplantae</taxon>
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            <taxon>Embryophyta</taxon>
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            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
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            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="MCI92029.1"/>
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    </dbReference>
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            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
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        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
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</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W779</accession>
    <name>A0A392W779_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
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            <taxon>Embryophyta</taxon>
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            <taxon>Spermatophyta</taxon>
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            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
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            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
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        <property type="protein sequence ID" value="MCI95582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W779"/>
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    </dbReference>
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            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
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        <location>
            <begin position="15"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4901" checksum="F30AFAAACD3F8AE8" modified="2018-12-05" version="1" fragment="single">MREGKSGTRKKKGRKGVEKGCDKPSVELVGGRLRESGDDEGRPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WJT9</accession>
    <name>A0A392WJT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
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            <taxon>Embryophyta</taxon>
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            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011455757">
        <property type="protein sequence ID" value="MCI97840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WJT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4107" checksum="8953110577CAD4D6" modified="2018-12-05" version="1" fragment="single">MARQKSDHGGGSDIDRLSTLPTQCCAIYCHFSQREPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZH3</accession>
    <name>A0A392LZH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plant/T31B5-30 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001142</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000988">
        <property type="protein sequence ID" value="MCH80375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004197">
        <property type="term" value="F:cysteine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056690">
        <property type="entry name" value="DUF7788"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011600">
        <property type="entry name" value="Pept_C14_caspase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011205">
        <property type="entry name" value="UCP015417_vWA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31373">
        <property type="entry name" value="OS06G0652100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31373:SF17">
        <property type="entry name" value="OS06G0652100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25043">
        <property type="entry name" value="DUF7788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00656">
        <property type="entry name" value="Peptidase_C14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="Caspase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase C14 caspase" evidence="1">
        <location>
            <begin position="22"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="DUF7788" evidence="2">
        <location>
            <begin position="355"/>
            <end position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="518" mass="59255" checksum="A0AD12B24ADABB88" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M955</accession>
    <name>A0A392M955_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004637</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005792">
        <property type="protein sequence ID" value="MCH83811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M955"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46235:SF13">
        <property type="entry name" value="EDM2-LIKE PROTEIN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46235">
        <property type="entry name" value="PHD FINGER-CONTAINING PROTEIN DDB_G0268158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10571" checksum="060F42FDFE03397D" modified="2018-12-05" version="1" fragment="single">GQEQITVELLHNCKAVTTERCDGACMRSFHATKADGRESLCDSLGFTKKEVDDIETFYCKNCEYRQHQCFACGELGSSDKDKGAEVLMETRSHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAH2</accession>
    <name>A0A392MAH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004032</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004821">
        <property type="protein sequence ID" value="MCH83214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058546">
        <property type="entry name" value="RPS4B/Roq1-like_LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF431">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23286">
        <property type="entry name" value="LRR_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein RPS4B/Roq1-like leucine-rich repeats" evidence="2">
        <location>
            <begin position="164"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="26555" checksum="A143047364FD74D7" modified="2018-12-05" version="1" fragment="single">MGKVIVQQESLEEPRKRSRLWSHKDIVEVLEENLGTSQIEIIYWDIPLYEEVVEWKGDEFKKMENLKTLIIKNSLFSKGPDHLPNSLRVLDWPGYPSQHIPSDFCPRKLSICKLPASYLTIFEFHSSLKADVREFERVKFKQQSRFETDTQCCSKLNSFPPMKLTSLEQLELSFCESLKWFPEILGQMKNTKIIVLKGTVIEEFPFSFQNLTGLHTLGIWGSGMLRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCH3</accession>
    <name>A0A392MCH3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005690</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007488">
        <property type="protein sequence ID" value="MCH84853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="191"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="335" mass="38538" checksum="249C96F391B4078A" modified="2018-12-05" version="1" fragment="single">GGKLTLKVRDYVAEFNLNKLVKQPAVKDTVYYMDTIDQCVAKVPPEPSSRHRLEMCLIGTSDEGPSKEEAKALLARLDKSLPYFSDALKNLKASQKHNLIKKASQVELKPLPKILRYEFLGEDNTYPVIVSAKLETSDTRRLLDVLKRHSKAIGYSLEDIKGINPTVCMHKILLEVDYKPSIDHQRRLNPNMKEVLKLLDAGVIYPISDSQWRLAKHTHFCYLDGYXQIPIHPDDQEKTTFTCPYGTYAYRRMPFGMCNAPATFQRCMMSIFSNFMEEIMEVFMDDFSFYGSSFEDCLTNLEKVLERCERVNLVINWEKCHFMVKEGIVLGQLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCV0</accession>
    <name>A0A392MCV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIR-NBS-LRR RCT1 resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008326">
        <property type="protein sequence ID" value="MCH85347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="155"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20647" checksum="711990AE9AE4BC7A" modified="2018-12-05" version="1">MPPSNNKSDWFNFSCNGSSVTFDVPTMKGDNLKSMILFVTYYSSLDNITSECCQGVLIINYTKITIHAYKRDTLTSFGHDDWQTITSNLEPGNKVEVMVVFGEGFIVEKTTLSLLYDEPINKEMKHCKAVDEEGVTVSSGGNIDMPADNNITGPHQDENEIEDNHGHEMCRKRKRGDNTRLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEQ5</accession>
    <name>A0A392MEQ5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Guanosine nucleotide diphosphate dissociation inhibitor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006092</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Rab GDI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008154">
        <property type="protein sequence ID" value="MCH85248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005093">
        <property type="term" value="F:Rab GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.519.10">
        <property type="entry name" value="Guanine Nucleotide Dissociation Inhibitor, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018203">
        <property type="entry name" value="GDP_dissociation_inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000806">
        <property type="entry name" value="RabGDI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11787:SF8">
        <property type="entry name" value="RAB GDP DISSOCIATION INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11787">
        <property type="entry name" value="RAB GDP-DISSOCIATION INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00996">
        <property type="entry name" value="GDI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00892">
        <property type="entry name" value="RABGDI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54373">
        <property type="entry name" value="FAD-linked reductases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12275" checksum="49338BC30916CD54" modified="2018-12-05" version="1" fragment="single">YLFCCSYSHNVCPKGKFIAFVSTEAETDQPAIELKPGIDLLGPVDEIFFDMYDRYEPVNEPGLDNCFISTSYDATTHFESTVVDVLNMYTLITGKVLDLSVDLSAASAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI10</accession>
    <name>A0A392MI10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dentin sialophosphoprotein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011273">
        <property type="protein sequence ID" value="MCH86961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="279"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="302" mass="33664" checksum="8F3B6AA14C6E38B6" modified="2018-12-05" version="1" fragment="single">MRQSQTSSRGASNRALPQKMSANCNSNVLVQNNQKQNAMTSKGKSASKTDFSKPTTGVSSSESSNGIRKATNKGATNVNVQXXXXXXXXXXXXXEFPPIQSTPYFPKEKYNNRGAHEVRSPDLARNGSESKSIKCNFTTDGSIDQKAFNMNESNDVSFTFTSPLRSMLEFFAPICYTAEMNRLHTLDQGALFVTEFANQVKSIWSNIGKVRPSCTCDITCRCAAHFDEFYQKLIVRSFLQGLNEDFGEFRHKTMYMQPMPSLDQAISTALHFENEMMTDKSNDTGNIDSNKSTDIADTYSNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKX1</accession>
    <name>A0A392MKX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008526</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012650">
        <property type="protein sequence ID" value="MCH87649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053197">
        <property type="entry name" value="F-box_SCFL_complex_component"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34223:SF51">
        <property type="entry name" value="OS06G0556300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34223">
        <property type="entry name" value="OS11G0201299 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="14"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="377" mass="42530" checksum="FF9E402E5C22D7DF" modified="2018-12-05" version="1" fragment="single">MIPPNTKIGRRHNQDRLSDLPDCLLIHILSFLDTENAVQTCILSPRWKYLWKTIPTLXXXXXXXXXKKRFATFVYKIMTLRDTKTALHSLDLDRPGKIELHLLKKILNYVDSHNTQIQQLSINVVADSYPILSCVSSCRALTSLKLDGYHKRRNGGFGEKLFPKSLNLPALTNLDLANFTFCASDNDECAEPFTAFNSLSSLTISNCLGRDALILSISNATLVNLTMRYTYRSNKVNKIKLSTPSLYTFSFFGIPCQQLCESGLSSVKQVDIEVPVHLTNRFEILLSWLQDLANVKSLTVTRTTLKVFSVVPNLFKVKLHSLCNLKSLKVKMDGGVVTSASIPNRIVDFLLQNSPTAEVDLIDYRTHVKLCDFLQNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM97</accession>
    <name>A0A392MM97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-glucose:glycoprotein glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012152">
        <property type="protein sequence ID" value="MCH87414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003980">
        <property type="term" value="F:UDP-glucose:glycoprotein glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018279">
        <property type="term" value="P:protein N-linked glycosylation via asparagine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009448">
        <property type="entry name" value="UDP-g_GGtrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040525">
        <property type="entry name" value="UGGT_TRXL_4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11226">
        <property type="entry name" value="UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11226:SF0">
        <property type="entry name" value="UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18403">
        <property type="entry name" value="Thioredoxin_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UDP-glucose:glycoprotein glucosyltransferase thioredoxin-like" evidence="1">
        <location>
            <begin position="26"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="26679" checksum="6358F6B1327CF27F" modified="2018-12-05" version="1">MVLCSHKKNALDFLDQLSSVYQQKYILTSAVEVDGTQAFIDEICKLAESNGLPSKGYRSSLSEFSAGEVRRHLSEVEKFLYIALGSESGVNAVFTNGRVRLSLSPAVTCPIDESTFLSADLHLLESIELKKRTNHIVDIIEEVTWQDVDPDMLTSKFISDIIMSVSSSMSMRERSSESARFEVLSDQHSAIILNNENSSIHIDAVLDPLSPTSQKLSGILRVLWKYIQPSMRIVLNPLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ58</accession>
    <name>A0A392MQ58_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016573">
        <property type="protein sequence ID" value="MCH89640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="128"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="29925" checksum="F63C9544AE0ED883" modified="2018-12-05" version="1" fragment="single">MAENTRMKELFVEVKKNVGDIKKLYDEVQIQFERFGAVSDARFQTMEDLQSSTDGKLDQINEALSLLLRNTPQNSSHGAANSHKAPFQVRKFKLGLPRFDGKNVMEWIFRAEHFFDYYDTPDKDRLTITSVHLDQDVVPWFQMIQITHPFNSWIEFTRALELDFGPSIYDYPRASLFKLNQTGTVSDYYMQFTALANKVYGLSIDALVDCFISGLNPEIRRDVMIHTPITIVKDVSLAKVYEEKYNSTIDDNKLYDVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWW8</accession>
    <name>A0A392MWW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021199">
        <property type="protein sequence ID" value="MCH91803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2681" checksum="205E223FE9BD963D" modified="2018-12-05" version="1" fragment="single">EEGLWTKQVMDSVSLALDYKLVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYH2</accession>
    <name>A0A392MYH2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MHD1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013501</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022946">
        <property type="protein sequence ID" value="MCH92561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014770">
        <property type="entry name" value="Munc13_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008528">
        <property type="entry name" value="unc-13_homologue"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31280:SF22">
        <property type="entry name" value="DUF810 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31280">
        <property type="entry name" value="PROTEIN UNC-13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51258">
        <property type="entry name" value="MHD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MHD1" evidence="1">
        <location>
            <begin position="282"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="40090" checksum="1E4C650F39E42E83" modified="2018-12-05" version="1" fragment="single">MRSPNGAPTNICHWANGFPVNVHLYISLLQSIFDLEDETLVLDEVDELLELMKKTWSTLAINRQIHNLCFTWVLFQQFVATGQREPDLIIASHAMLNEVANDAKKEKDSFYVKMLTSVLGSLQGWADKRMLNYHHYFQGESIKQIENLLPVVLLASKVLEDDTISDGEWQVKXGKTLADSSEDRVNDYIRSSLKNAFEMMIESENGKSTESETKKDISEVMLELAQQTEDLATKERQNYSPILKKWYTIAGGVAAMTLNNCYGHVLNQFLSEMIKTISVELILVLKKARRLEDILVQMVVEDSADCEDGGKTVVREMVPFEVDSTLLNLMKKWIDESNQKGNDFLQKAKESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0H0</accession>
    <name>A0A392N0H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Telomerase activating protein Est1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023214">
        <property type="protein sequence ID" value="MCH92685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005697">
        <property type="term" value="C:telomerase holoenzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070034">
        <property type="term" value="F:telomerase RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042162">
        <property type="term" value="F:telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000184">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019458">
        <property type="entry name" value="Est1-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045153">
        <property type="entry name" value="Est1/Ebs1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15696">
        <property type="entry name" value="SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15696:SF0">
        <property type="entry name" value="TELOMERASE-BINDING PROTEIN EST1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10374">
        <property type="entry name" value="EST1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Telomerase activating protein Est1-like N-terminal" evidence="1">
        <location>
            <begin position="68"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="25346" checksum="4999ACB3BEC7FEBE" modified="2018-12-05" version="1" fragment="single">MTTDLSLSPEIHTNEVLLEIGNSEKQLWGLIHSKGILHSDAXXXXXXXXACYERVILSNYTYAELQDVEYSLWKLHYKHIDEFRKIIKKSSGDVESNKLGTTQTGALQRSTSNPFKLFKLFLSDASEFYQNLIVKLRKHSGVSEEALFRKKGWIFTSVEPEIKLKCKYLCHRCLVCMGDLARYKEQCENPDTQNHNWSVAATHYLEATRIWPNSGNPQNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N754</accession>
    <name>A0A392N754_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028725">
        <property type="protein sequence ID" value="MCH95009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N754"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8943" checksum="CA7F654678B01731" modified="2018-12-05" version="1">MAPAADEHGAAKGLVTRTELVEKIGSLARDVLKGAKYGFNNAVAQLKMVNVGVELTTEGIDMLRRVEDGQIIIPEEYKEMEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N869</accession>
    <name>A0A392N869_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">E3 ubiquitin-protein ligase</fullName>
            <ecNumber evidence="1">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016173</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the E3 ubiquitin-protein ligase UBR1-like family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010029193">
        <property type="protein sequence ID" value="MCH95198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N869"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000151">
        <property type="term" value="C:ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071596">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process via the N-end rule pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.2670:FF:000003">
        <property type="entry name" value="E3 ubiquitin-protein ligase PRT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2670">
        <property type="entry name" value="E3 ubiquitin-protein ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042065">
        <property type="entry name" value="E3_ELL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039164">
        <property type="entry name" value="UBR1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055194">
        <property type="entry name" value="UBR1-like_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21497:SF53">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE PRT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21497">
        <property type="entry name" value="UBIQUITIN LIGASE E3 ALPHA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22960">
        <property type="entry name" value="WHD_UBR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="E3 ubiquitin-protein ligase UBR1-like winged-helix" evidence="2">
        <location>
            <begin position="23"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU366018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="322" mass="35868" checksum="E164C9B9D34842EF" modified="2018-12-05" version="1">MLILIIQIVKERRFCGLTTAESLKRELIYKLSIGDATHSQLVKSLPRDLSKFDKLQDVLDTVAAYSNPSGFNQGMYSLRWPFWKELDLYHPRWNSKDLQVAEERYLRFCSVSALTTQLPKWSSIYPPLKGIARIGTCKVVLEIIRAVLFYAVVTFKSAESRAPDSVLLPALHLLSLSLDICSQQKENSDNAFNNMAQIPVVEFSGEIIVESSSYGVGEQSLLSLLVLLMEMNKKENDDSSVDVGGLSSLVESLLKKFAELDDSCMIKLQKLAPGLVNHIPECVPTGDPSVSLSASDSEKRKAKARERQAAIMVGCCVLYFSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA59</accession>
    <name>A0A392NA59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Calmodulin-binding transcription activator 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031584">
        <property type="protein sequence ID" value="MCH96129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335:SF29">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017277411" evidence="2">
        <location>
            <begin position="16"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="18403" checksum="39F11DDA6B642020" modified="2018-12-05" version="1" fragment="single">MHLVLMVFFLAHVRGHQVRKQYKTVIWSVGILEKVILRWRRKGSGLRGFRPETLNKAPSQQNDSPKEDDYDYLKEGRKQKEEKIEKALSRVKSMVRYPEARAQYRRVLNVVEDFRQKKDCNMGLISSEETVDGVEDLIDIDMLLDDDNFNAIAFDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAS3</accession>
    <name>A0A392NAS3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017771</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033242">
        <property type="protein sequence ID" value="MCH96782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5074" checksum="0DC04A6E99CC3433" modified="2018-12-05" version="1">MTDFAQRHHEALQHCRRIIVPKGLEKLSSFFKADNLILIHGCAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFJ5</accession>
    <name>A0A392NFJ5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF7028 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038132">
        <property type="protein sequence ID" value="MCH98627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017956">
        <property type="entry name" value="AT_hook_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054292">
        <property type="entry name" value="DUF7028"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02178">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22970">
        <property type="entry name" value="DUF7028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00929">
        <property type="entry name" value="ATHOOK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00384">
        <property type="entry name" value="AT_hook"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7028" evidence="2">
        <location>
            <begin position="231"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="187"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="39136" checksum="9357F51011626172" modified="2018-12-05" version="1" fragment="single">MIQVKQELEEADEVLTDGKKNDRVRMKMGGKGKKKLKRKRGRPPKTEIKEKDQLDDQPPRKLGRPPKTEIKEKDQLDDQPPRKLRRPCRTELKEDDQSPRKLGRPRKTELKEDVQSPRKLGRPLKTELKEDVQSPRKRGRPPKTEQQKHLMTLAHNSKGNVSREDGKKVVTVTDSASESEVDDTRSRRSSGKKLKKKGFSPVRKNKLRKVLKTENGGMASNTVNVPVAKQSTSREEKKLVRDKIMECLSAAGWTVDRRPRNGRDYIDAVYVALDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISEEDFNSLTRVVTKSKIGSKVKRVPFGGKGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFW2</accession>
    <name>A0A392NFW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Callose synthase 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038381">
        <property type="protein sequence ID" value="MCH98719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010038439">
        <property type="protein sequence ID" value="MCH98747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003843">
        <property type="term" value="F:1,3-beta-D-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741:SF16">
        <property type="entry name" value="CALLOSE SYNTHASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741">
        <property type="entry name" value="LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6994" checksum="D95AA93C36BF6B53" modified="2018-12-05" version="1" fragment="single">MVSMGRRRFSTDFQLMFRILKALLFLGFLSVMTVLFVVCALTVSDLFASILAFMPSGWAIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGX9</accession>
    <name>A0A392NGX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleoporin Nup188-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037679">
        <property type="protein sequence ID" value="MCH98469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044611">
        <property type="term" value="C:nuclear pore inner ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006405">
        <property type="term" value="P:RNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044840">
        <property type="entry name" value="Nup188"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31431:SF1">
        <property type="entry name" value="NUCLEOPORIN NUP188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31431">
        <property type="entry name" value="NUCLEOPORIN NUP188 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9058" checksum="F46EA1397E29D842" modified="2018-12-05" version="1" fragment="single">MVGVFQQAVPVPGIEGLFVPSGTRGRVLKVVGEKTALVRWEYSPSGVYVLLLHLAQDMYLNNKEEVFYTLDLLSRLVSFNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKG3</accession>
    <name>A0A392NKG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PAP-specific phosphatase HAL2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040705">
        <property type="protein sequence ID" value="MCH99585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008441">
        <property type="term" value="F:3'(2'),5'-bisphosphate nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000103">
        <property type="term" value="P:sulfate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.540.10">
        <property type="entry name" value="Fructose-1,6-Bisphosphatase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051090">
        <property type="entry name" value="Inositol_monoP_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43200:SF17">
        <property type="entry name" value="3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43200">
        <property type="entry name" value="PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56655">
        <property type="entry name" value="Carbohydrate phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600760-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH99585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="24915" checksum="5BDEC88EDD8945BB" modified="2018-12-05" version="1" fragment="single">ASELLDSVVKTVNECLADAPRFGVQKPKSSLGASEVLDIISRCNSTGGPSGRFWVLDPVDGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMRKEWLGYQHRYHRIVSKLTPPNSDSWNKGCVLYAKKGSGKAWMQPLLNVNKMFVWPNHAKQVFVSSIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRGGPSLGRGSAVARVWLCSIYISSTCCPFYEKDRHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNQ4</accession>
    <name>A0A392NNQ4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044925">
        <property type="protein sequence ID" value="MCI01004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF77">
        <property type="entry name" value="DNASE I-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="222" mass="26047" checksum="754BED1EC27BB7B3" modified="2018-12-05" version="1" fragment="single">MNDAWLVAXDFNDIASVDEKKGXAAVSIRKCNKFQDRINACNLLDLGAMGHKFTWRGPIYHGGQRIYERLDRALGNESWRMKFPDACVKVLARLDFSDHHPLLITPKNVPHPVAPRXXXXXXXXXXXXXXKEMIEASWKHDQNVVSNLGNVQHELRRWKFQTFDQVLRMKKQLMARIDGVQHRMQSGNGDRRLWRLEIKLQNELRNILKKEELMWFQRSRAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPI6</accession>
    <name>A0A392NPI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">HBS1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046990">
        <property type="protein sequence ID" value="MCI01751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04093">
        <property type="entry name" value="HBS1_C_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000060">
        <property type="entry name" value="elongation factor 1-alpha isoform X4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054696">
        <property type="entry name" value="GTP-eEF1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050100">
        <property type="entry name" value="TRAFAC_GTPase_members"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23115">
        <property type="entry name" value="TRANSLATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22594">
        <property type="entry name" value="GTP-eEF1A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP-eEF1A C-terminal" evidence="3">
        <location>
            <begin position="59"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI01751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17165" checksum="EF36A92EE94E1FCA" modified="2018-12-05" version="1" fragment="single">MPSDVVGTVRTLERDSNVCSVARAGDNVAVTLHGVDGSHVFSGGVLCHPDFPVAIAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQF7</accession>
    <name>A0A392NQF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Long chain acyl-CoA synthetase 9 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0022475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046173">
        <property type="protein sequence ID" value="MCI01450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004467">
        <property type="term" value="F:long-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272:SF83">
        <property type="entry name" value="ACYL-COA SYNTHETASE LONG-CHAIN, ISOFORM J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI01450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="10908" checksum="AD71C9DB0DAB72B1" modified="2018-12-05" version="1" fragment="single">GVMMTHGNVLATLSAVMTIVPKLGKKDVYLAYLPLAHILELAAENLMAAVGIAIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR57</accession>
    <name>A0A392NR57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047473">
        <property type="protein sequence ID" value="MCI01892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NR57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10298" checksum="213320F3A12A8B4A" modified="2018-12-05" version="1" fragment="single">MQIRRDKGLCYWCDEKFSFTHKCPNRQLMLLQYEDNDEDQVLETLIQPTETTINSLDTNQPEHHLSLNAMKGTSNMGVLRFAGSIEHIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRE7</accession>
    <name>A0A392NRE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB/POZ and MATH domain-containing protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Tdpoz family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048980">
        <property type="protein sequence ID" value="MCI02393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.3030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056423">
        <property type="entry name" value="BACK_BPM_SPOP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045005">
        <property type="entry name" value="BPM1-6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR26379">
        <property type="entry name" value="BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR26379:SF434">
        <property type="entry name" value="BTB_POZ AND MATH DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24570">
        <property type="entry name" value="BACK_BPM_SPOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BPM/SPOP BACK" evidence="3">
        <location>
            <begin position="69"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI02393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11348" checksum="89E8C98039DBE002" modified="2018-12-05" version="1" fragment="single">MPYFSNLQALLHVIYWDSLPDMQELTGINSKWATTLMAQHLLAAADRYGLDRLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUY6</accession>
    <name>A0A392NUY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052789">
        <property type="protein sequence ID" value="MCI03631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36037">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36037:SF1">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10049" checksum="FF259BC58C6F6719" modified="2018-12-05" version="1" fragment="single">YSLEYLDKDETIVAHLVKGIDAYIKLSHGWPIFGSPLKLISIKGLDILKKKSASFHCEVEMCKSILYVVPKFSPQTVLLKLLAESTGIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P542</accession>
    <name>A0A392P542_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064471">
        <property type="protein sequence ID" value="MCI07183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P542"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5572" checksum="56C82400E4CF57D2" modified="2018-12-05" version="1">MLMDGSTSNVDICKEGTIGDNVTNTTETHTHCEVPGSNPGEGVQPSNINIGIVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCA6</accession>
    <name>A0A392PCA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072556">
        <property type="protein sequence ID" value="MCI09414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="16317" checksum="72555E2FB5A40698" modified="2018-12-05" version="1" fragment="single">MARVLRSNQENTSCILVLHCQTVATSSSNSRDERNWIADRQSCTTLHLHRPINSNHDHAWYSRNAGDGGAENGLLFTDPATEKTTTTIHGGGLANSEGGKPNLKQPAPPFMQVKNNRGGAPAVKGEAEGGDGSHLVASTGGVSYILSDLGLELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEV0</accession>
    <name>A0A392PEV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072494">
        <property type="protein sequence ID" value="MCI09395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11603" checksum="247E5BD47938383F" modified="2018-12-05" version="1">MLLFTATFTEPPVSISPVSSTFTLPPDSILPTFTFDHPDTNPYRPPSWFVWLMIGFSVILVFTVVIAFLQCCCSRRSLPQPPPVVLPHMPMTEIEMQPLLARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGL7</accession>
    <name>A0A392PGL7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076999">
        <property type="protein sequence ID" value="MCI10620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5367" checksum="07FD53AF4EB665C1" modified="2018-12-05" version="1" fragment="single">PASGPTRTRSSCNNVFSKVDLPTLGRPTIANCNGSLLSSTSAELVSSPQLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIU9</accession>
    <name>A0A392PIU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ras-related protein RABD2a-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077772">
        <property type="protein sequence ID" value="MCI10825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="5711" checksum="A3E53200B9993347" modified="2018-12-05" version="1">METSAKDATNVEGAFMAMAAAIKDRMASQPSANNARPPTVQIKGQPVGQKGGCCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJH3</accession>
    <name>A0A392PJH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080966">
        <property type="protein sequence ID" value="MCI11639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7183" checksum="848BB7CBFD19F647" modified="2018-12-05" version="1">MNGEMVTKKGDPCLSRNVRSSIMVLLRSDLKCTSVDELDLDSKLSKLHGTTTFTLLSNFAFFKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL19</accession>
    <name>A0A392PL19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Spindle and kinetochore-associated protein 3</fullName>
        </submittedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Centromere</location>
            <location evidence="2">Kinetochore</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
            <location evidence="1">Spindle</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SKA3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085592">
        <property type="protein sequence ID" value="MCI12793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000940">
        <property type="term" value="C:outer kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005876">
        <property type="term" value="C:spindle microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000278">
        <property type="term" value="P:mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033341">
        <property type="entry name" value="SKA3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48118">
        <property type="entry name" value="SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48118:SF1">
        <property type="entry name" value="SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6" id="KW-0132">Cell division</keyword>
    <keyword evidence="12" id="KW-0137">Centromere</keyword>
    <keyword evidence="4" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="9" id="KW-0995">Kinetochore</keyword>
    <keyword evidence="7" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8" id="KW-0498">Mitosis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI12793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10156" checksum="DEB73D9FCA394567" modified="2018-12-05" version="1" fragment="single">MLDSKSFGTVSFEELLGHCNELYKKNQTDLIQLEDRLKSYGYVPASDIDEEDEVYDSQPQISDDKLDSPSSFYGSLSVAKSGFKNFEEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM26</accession>
    <name>A0A392PM26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085157">
        <property type="protein sequence ID" value="MCI12687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="219" mass="24888" checksum="E2CFA68D267DECEA" modified="2018-12-05" version="1" fragment="single">FPEECRNILDFILEASECHNRPEYEACEFFSEFIRRPRGHSSFTEVWVEFVKEKDLKIQEGASTKSVTTQIELDPLGNKGEDSEVDKVVETPRSEEGIHKEDEEPSQTKETDLERFMETLKKLEASSLEDKQQPDDYIFVTEECSAILTKKPQQKRDDPRSLPIPCSIGEVTIEGALCDLDSNINLMTFSLASRLVANIGELKTTPKTLILADRSEICP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMC3</accession>
    <name>A0A392PMC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087444">
        <property type="protein sequence ID" value="MCI13243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10776" checksum="FB894B09824BA839" modified="2018-12-05" version="1">MKRNSSIEKKSSSSKHLGSNSQILKEMRKPGCLPMHLERKMFLNTSTKPLLLRLTVTKPGNAHHLDVKSAKSLQRREQKGNKTLNRTPLSSRILT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5E5</accession>
    <name>A0A392Q5E5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113291">
        <property type="protein sequence ID" value="MCI19117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5E5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34374">
        <property type="entry name" value="LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34374:SF1">
        <property type="entry name" value="LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12643" checksum="2DA732E1DEC0E711" modified="2018-12-05" version="1">MPSAETIFSEFSLLLTEEPPIDEPDTINLGVILGEDKISTRRKSGEDDDAEDALIDLDDQLHFPPEEKQIDISKNIRDRVHLEITLNSVCDSACKVKRMARVSCIYAHDVLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5Z1</accession>
    <name>A0A392Q5Z1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Clathrin heavy chain 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113428">
        <property type="protein sequence ID" value="MCI19140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5Z1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030132">
        <property type="term" value="C:clathrin coat of coated pit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030130">
        <property type="term" value="C:clathrin coat of trans-Golgi network vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071439">
        <property type="term" value="C:clathrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032051">
        <property type="term" value="F:clathrin light chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.110">
        <property type="entry name" value="Clathrin heavy-chain terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016025">
        <property type="entry name" value="Clathrin_H-chain_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022365">
        <property type="entry name" value="Clathrin_H-chain_propeller_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10292:SF25">
        <property type="entry name" value="CLATHRIN HEAVY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10292">
        <property type="entry name" value="CLATHRIN HEAVY CHAIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01394">
        <property type="entry name" value="Clathrin_propel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50989">
        <property type="entry name" value="Clathrin heavy-chain terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11288" checksum="5496099CE10E8C37" modified="2018-12-05" version="1" fragment="single">KPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDMETATAVYRNRISPDPIFLTAEASSVGGFYAVNRRGQVLLATVNEATIVPFVSGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7M9</accession>
    <name>A0A392Q7M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116296">
        <property type="protein sequence ID" value="MCI19730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7M9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6096" checksum="B2F2481C39A49594" modified="2018-12-05" version="1" fragment="single">MGTICQARARMSSYGNPLKHCSRDREMTRKDSVSRGVTTQLSDIGACEDLSQIFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDN3</accession>
    <name>A0A392QDN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding transcription activator 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010125857">
        <property type="protein sequence ID" value="MCI21616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335:SF30">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="18198" checksum="79DE4E08DF0B7F2C" modified="2018-12-05" version="1" fragment="single">ERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLESIDLKRGAGESFGTKVVQRVQEQNTAQLNNEGISHELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYVDEKFGISDEQALSLIAVNAKSHKSGQRDEPVHVAATRIQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QH33</accession>
    <name>A0A392QH33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclic nucleotide-gated ion channel 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133863">
        <property type="protein sequence ID" value="MCI23050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QH33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651:SF50">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI23050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10873" checksum="3C7F6DDF8891F595" modified="2018-12-05" version="1" fragment="single">MQIWNRALLLARGVALAIDPIFFYVLSIGRGGSPCLYMDGGLALVVTVARSAVDAIHLLHILLQLRLPYVSRESLVVGRGKLVWDARAIASHYMRSLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKG3</accession>
    <name>A0A392QKG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010137831">
        <property type="protein sequence ID" value="MCI23785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3585" checksum="282E4C29F814818C" modified="2018-12-05" version="1" fragment="single">KLSVSSTESGHHNALELDDVSKVLLGFAFSVLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNY1</accession>
    <name>A0A392QNY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010148517">
        <property type="protein sequence ID" value="MCI25659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="122"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="21158" checksum="10192BE9A49F30D4" modified="2018-12-05" version="1" fragment="single">RTSYNRLRSFNSYPDLRQESLWVAARDERWRFSDDTHVNGYRGLDLNFKEEKEEASTKDIEVDTSLKGKMKQALEPGLDLNFKQEKEEVSTRNIEVDTSLKGKNKKKQALERGLDLNIKQGKEASTKDIEVDTSLKGKNRKKQAIEMHESETIEKAKNNKDSERKNKKASSTKDDKTYRSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSM8</accession>
    <name>A0A392QSM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endo-14-beta-xylanase A-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154382">
        <property type="protein sequence ID" value="MCI26620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.260">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003305">
        <property type="entry name" value="CenC_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02018">
        <property type="entry name" value="CBM_4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="Galactose-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0858">Xylan degradation</keyword>
    <feature type="domain" description="CBM-cenC" evidence="2">
        <location>
            <begin position="15"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI26620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13427" checksum="599B10E315C0105E" modified="2018-12-05" version="1" fragment="single">IMAERISSGSWSNASNILMNHDFSDGLNYWYLNCCNGYVISVGAGDQGGILMDSDQNYAVITKRNECWQGLEQDVTDRISIGSFYRVSAFVGVSGPSQESAEVKATLKLEYDDSATQYLFIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSZ1</accession>
    <name>A0A392QSZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156460">
        <property type="protein sequence ID" value="MCI26964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13964" checksum="AFE2A697B41D14A8" modified="2018-12-05" version="1" fragment="single">MRKAVELDLFKGFSIGREPVVISHLQYVDDTLCIGEASVNNLWTLKAILRGFELASGLKVNFWKSGLMGVNVSPTFMAMACTFLNCRRGSIPFKYLGLPIGANPKSISTWDPLLEHLRQRLYSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYR9</accession>
    <name>A0A392QYR9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010169668">
        <property type="protein sequence ID" value="MCI29012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="85"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="119" mass="13751" checksum="65C20D17667AFD2C" modified="2018-12-05" version="1">MTEVALEAIVQKEGEPLRAYLKRFNKVAVEVKTDDRMKLYLLDRGLRRGCDFAKAIGIEKIKTLDAFFEKAQKYIAYEEKQVAAEVRRPKSEEEARPLCRGPDKRKERQSPKQSKPPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4W3</accession>
    <name>A0A392R4W3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185952">
        <property type="protein sequence ID" value="MCI31277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4W3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5834" checksum="E80FA7EE62908A00" modified="2018-12-05" version="1" fragment="single">MKFKVDRVIQALELEENPVAVEVEKEGDEDVAADDANADGEDEQVEDSDESPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6S9</accession>
    <name>A0A392R6S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DEAD-box ATP-dependent RNA helicase 42</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190131">
        <property type="protein sequence ID" value="MCI31792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16695" checksum="EFE67C84AC2F374F" modified="2018-12-05" version="1" fragment="single">KLADNEPRESMVVDVDNGTVATDLQNGDAGAPADDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKASDLKPXXXXXXXSNGRQSRKGSNKSIGRIIPGEESDSDYADSDVEGDPLDEDDDDFMKRVKKTKVEKLSLVDHSKIDYIPFRKNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RA06</accession>
    <name>A0A392RA06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010200919">
        <property type="protein sequence ID" value="MCI33037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RA06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6867" checksum="DA62A9572F1BFE6C" modified="2018-12-05" version="1" fragment="single">MSPTRTPFGGPEPSLSGAVAPPPCAFDPVHKVLATPPSGETGFVGTMGPSFLRDSSAPFDKPTFSFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAF6</accession>
    <name>A0A392RAF6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Expansin</fullName>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Secreted</location>
            <location evidence="7">Cell wall</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the expansin family. Expansin A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010200759">
        <property type="protein sequence ID" value="MCI33014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009653">
        <property type="term" value="P:anatomical structure morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.760:FF:000001">
        <property type="entry name" value="Expansin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.760">
        <property type="entry name" value="Expansin, cellulose-binding-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007118">
        <property type="entry name" value="Expan_Lol_pI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002963">
        <property type="entry name" value="Expansin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007117">
        <property type="entry name" value="Expansin_CBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036749">
        <property type="entry name" value="Expansin_CBD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31867">
        <property type="entry name" value="EXPANSIN-A15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01357">
        <property type="entry name" value="Expansin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01226">
        <property type="entry name" value="EXPANSIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01225">
        <property type="entry name" value="EXPANSNFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49590">
        <property type="entry name" value="PHL pollen allergen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50843">
        <property type="entry name" value="EXPANSIN_CBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0134">Cell wall</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Expansin-like CBD" evidence="8">
        <location>
            <begin position="18"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI33014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11223" checksum="82352D09A9551481" modified="2018-12-05" version="1" fragment="single">IKCRREGGVRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTAYNVAPKDWSFGQTFEGKQFDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAP3</accession>
    <name>A0A392RAP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Plastid division protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010206189">
        <property type="protein sequence ID" value="MCI33651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010020">
        <property type="term" value="P:chloroplast fission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="entry name" value="Tubulin/FtsZ, GTPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020805">
        <property type="entry name" value="Cell_div_FtsZ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045061">
        <property type="entry name" value="FtsZ/CetZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017975">
        <property type="entry name" value="Tubulin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314:SF12">
        <property type="entry name" value="CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314">
        <property type="entry name" value="CELL DIVISION PROTEIN FTSZ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00423">
        <property type="entry name" value="CELLDVISFTSZ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="Tubulin nucleotide-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01134">
        <property type="entry name" value="FTSZ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01135">
        <property type="entry name" value="FTSZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00227">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tubulin/FtsZ GTPase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI33651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="9767" checksum="9010489C1469B8BA" modified="2018-12-05" version="1" fragment="single">ICYQGVDFYAINTDAQALLHSAAENPIKIGELLTRGLGTGGNPLLGEQAAEESKEAISNSLKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RB77</accession>
    <name>A0A392RB77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein NLP8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010200949">
        <property type="protein sequence ID" value="MCI33040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RB77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4785" checksum="9F221057C08318A1" modified="2018-12-05" version="1" fragment="single">MPVPKNVLIPRTKVNNVDGGINSLVSEDMPSSFSELMNFDTYAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCG9</accession>
    <name>A0A392RCG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein IWS1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010207761">
        <property type="protein sequence ID" value="MCI33822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36005">
        <property type="entry name" value="DNA LIGASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36005:SF1">
        <property type="entry name" value="DNA LIGASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13178" checksum="1CE193BF08C9EECD" modified="2018-12-05" version="1" fragment="single">SSDDEENDRENIVPHLPGSADSTLPPNGDPVKAFVDEEAEEEDDSDNDLQRFQDNEEVEDDDDIEELNDMIATGYEEDPIDREKRDQLHQQWLEQQDTTGMDSLLQKLNCGSRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJ21</accession>
    <name>A0A392RJ21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010229589">
        <property type="protein sequence ID" value="MCI36024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJ21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5473" checksum="F784289421D6ACF4" modified="2018-12-05" version="1">MKSSEMSIKASSDFDSAPMVLESSDPVESWLSSSDGELCETVVFLGCPENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKB0</accession>
    <name>A0A392RKB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010234135">
        <property type="protein sequence ID" value="MCI36474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8257" checksum="0A514B60C9F56C84" modified="2018-12-05" version="1" fragment="single">MDPSHVIETDDIQVRDNLTVETIPLRIEGWEVKKLRNKEIASVKVVWGGPTGENATWELESKMKDSYPELFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RN69</accession>
    <name>A0A392RN69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010242414">
        <property type="protein sequence ID" value="MCI37240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RN69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5090" checksum="5BA8A0D0B8A92305" modified="2018-12-05" version="1" fragment="single">RLSRPMPSIIPPPLQADVEYSSTASPGRCRVFLPPPLQADAHRNLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RT40</accession>
    <name>A0A392RT40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010259565">
        <property type="protein sequence ID" value="MCI38765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RT40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7531" checksum="8561EBAB7B30684B" modified="2018-12-05" version="1" fragment="single">MTTADAVASYDGDGVTICHSVGSRELARATRVKVANYGGGDAKYGDGVSICHDGDNNNNNNNNNNNNNNNNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXR1</accession>
    <name>A0A392RXR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Anthocyanidin 53-O-glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010289058">
        <property type="protein sequence ID" value="MCI41189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9326" checksum="8548BECD6895BC05" modified="2018-12-05" version="1" fragment="single">MEAALNGVPILGWPQHSDQKINAGLVEFSGWGIWNKSWGWGGECVVKGEEIGDAIKEIMENELLKVKAMQIKEGGRKAISVGGDCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZZ8</accession>
    <name>A0A392RZZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010294722">
        <property type="protein sequence ID" value="MCI41654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017208019" evidence="2">
        <location>
            <begin position="29"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI41654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10168" checksum="1E0E9E4C2589532A" modified="2018-12-05" version="1" fragment="single">TRSSAHLKTLSTCHNILLCCSLVTVTITGVVPSSTPPPPPTAVGFGNRASINRNSVSREPETTSDPTRRVTCPSGSGPSICSLRVPLEGMNSNETDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S379</accession>
    <name>A0A392S379_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010303395">
        <property type="protein sequence ID" value="MCI42345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S379"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2622" checksum="4718B30B47A1ACD6" modified="2018-12-05" version="1" fragment="single">IPMTTAVGVRIGFYATVQSVLLATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5V7</accession>
    <name>A0A392S5V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010316488">
        <property type="protein sequence ID" value="MCI43380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9543" checksum="99473947555F08B6" modified="2018-12-05" version="1" fragment="single">AKFDFEVSEKVTGETLIQEGSEIRNTVTPTTDGCDIPKIDDDTDVENVVDHANQSLNEKDLVHDVGKSVETSGTQEELVEDSLPATPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBU2</accession>
    <name>A0A392SBU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010355822">
        <property type="protein sequence ID" value="MCI46318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10272" checksum="24256B13E9242F01" modified="2018-12-05" version="1" fragment="single">RIGNLPVVCEFPDVFPDDISDMLPKREVEFAIDLVPSTSPVSMAPYRMSASELNELKKQLEELLEKKFIRPSVSPWGAPVLLVKKKEGSMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SF21</accession>
    <name>A0A392SF21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010366436">
        <property type="protein sequence ID" value="MCI47042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SF21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9939" checksum="AF28A803D1311041" modified="2018-12-05" version="1" fragment="single">MYSTTTPPPNFDELLFTVTENAARRDIRWPAIERQQSATRKKRTGQVGDGSWRWVEDWRQINDLEMRKRIALVFDSRFIDYFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFN1</accession>
    <name>A0A392SFN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010365983">
        <property type="protein sequence ID" value="MCI47004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10791" checksum="921312CCB1927078" modified="2018-12-05" version="1" fragment="single">VVNSGVAENVEVSLSKGDDSHLNKESINDDEGKVSVEDLNYKTGLETVVSDQDKVSPLNGGSENNSGVLKEEKVNVEDTAAKGCGFSYGEKERERFNKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGV6</accession>
    <name>A0A392SGV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010367208">
        <property type="protein sequence ID" value="MCI47096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="2143" checksum="794EC35E8D9867DB" modified="2018-12-05" version="1" fragment="single">MEGETWALLQAMKEVIHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHV5</accession>
    <name>A0A392SHV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010380759">
        <property type="protein sequence ID" value="MCI48042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2946" checksum="64DDF18541EB33D9" modified="2018-12-05" version="1" fragment="single">MVLQQASEPIVVEEELEEDDVNVLCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SL49</accession>
    <name>A0A392SL49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010389663">
        <property type="protein sequence ID" value="MCI48660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SL49"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2741" checksum="66EC2886D185CBBA" modified="2018-12-05" version="1" fragment="single">RTSQAAAAPDLGGGGGSVELQPENSSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1Z0</accession>
    <name>A0A392T1Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010491013">
        <property type="protein sequence ID" value="MCI55118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7749" checksum="A5E8DD1D6F1C9131" modified="2018-12-05" version="1" fragment="single">MSAAEYAAKFESLCAFSPYYNTPEAEYDKCVKFESGLHPDVKHLIGFPEIRDFPTLVNKSRICDEDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T982</accession>
    <name>A0A392T982_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010515759">
        <property type="protein sequence ID" value="MCI56656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T982"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3833" checksum="64F43E9E9E5F07C8" modified="2018-12-05" version="1" fragment="single">MVDVLVHVEFEVVVVLALVEFEVVVEVVVEVDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB68</accession>
    <name>A0A392TB68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010545677">
        <property type="protein sequence ID" value="MCI58403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6769" checksum="5AA27785ED20CC14" modified="2018-12-05" version="1" fragment="single">MLRRFDFDEKWRSWVRACIFAGSLSVLVNGSPTEQVDISKGLKQGDPLGPFLFILVAEGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFC7</accession>
    <name>A0A392TFC7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010557288">
        <property type="protein sequence ID" value="MCI59107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="68" mass="7424" checksum="6AC53B62AE78CFF3" modified="2018-12-05" version="1" fragment="single">MMESINVVIDDSATEQAINVETDVAASDQILDISLDSDSKPEESNSKKDNIPTNKGPSVRVQKNHPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFF1</accession>
    <name>A0A392TFF1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010567709">
        <property type="protein sequence ID" value="MCI59652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="66" mass="7921" checksum="A7F40C3CCAEDDBF3" modified="2018-12-05" version="1" fragment="single">MGCTEENKTILGTYVLREESNVWWKNVKLRLGVEGVAIPWEVFRRKFLRKYFPADVKNKKVIEFME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TM18</accession>
    <name>A0A392TM18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010603390">
        <property type="protein sequence ID" value="MCI61644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TM18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3696" checksum="88C3E8B3AD4D1FA3" modified="2018-12-05" version="1" fragment="single">PPPPPHPPPPPPPPPHPHPPPPTPLNPLPPQPPPDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMH6</accession>
    <name>A0A392TMH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010614466">
        <property type="protein sequence ID" value="MCI62182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7425" checksum="6DCF51DDD9DDFC6C" modified="2018-12-05" version="1">MTQEKPSNTLALMLVKTPRKTSSCSPLDLKKHSSNKLISAGCAPRRPGCAPRRLQVQHPHLAKALRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN27</accession>
    <name>A0A392TN27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010621167">
        <property type="protein sequence ID" value="MCI62571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5563" checksum="B68AA6A8F9E91CBE" modified="2018-12-05" version="1" fragment="single">MFCLWRGAQLALARRAVLCAKGGLTFGRLRDAQLGWRNAQRSPVSSVFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUB1</accession>
    <name>A0A392TUB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010663005">
        <property type="protein sequence ID" value="MCI64781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="1914" checksum="0C45E0BA41511E4A" modified="2018-12-05" version="1" fragment="single">MGMSFRSALDGVVFVLGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVJ0</accession>
    <name>A0A392TVJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010666906">
        <property type="protein sequence ID" value="MCI64969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4931" checksum="05C46E44D770E22E" modified="2018-12-05" version="1" fragment="single">GQEEGGVVTMMEDAKEHGWSNDFERFDHGVHGKLITRDSGSRVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXZ3</accession>
    <name>A0A392TXZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010686655">
        <property type="protein sequence ID" value="MCI66002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7333" checksum="867959DBA1EBEFED" modified="2018-12-05" version="1" fragment="single">VDWGYLDEVMGRMSFPTLWRKWIKECVCMATASVLVNGSPTEELPLERGLRQGDPLSSFLFLLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYR1</accession>
    <name>A0A392TYR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010692917">
        <property type="protein sequence ID" value="MCI66302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9162" checksum="546B039378666153" modified="2018-12-05" version="1" fragment="single">MNNKPPIFKGGYDPDSAQTWLEGIERIFGAMRYQDEHRVLLGGYVLHDEADHWWGNAKQRLEVDGAIITWARFKREFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYW9</accession>
    <name>A0A392TYW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010691325">
        <property type="protein sequence ID" value="MCI66229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4912" checksum="E50E7E5BBB1154AB" modified="2018-12-05" version="1" fragment="single">MKKGGSKAYAHAKKKKPEDKTSTTKPSNAQRKLKYKQEESSESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2V4</accession>
    <name>A0A392U2V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DEAD-box ATP-dependent RNA helicase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010720996">
        <property type="protein sequence ID" value="MCI67642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4273" checksum="1CEC400954F022A3" modified="2018-12-05" version="1" fragment="single">MEISSMQKNLPRKKRRKLEAAREMLEDDEQDDKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4W0</accession>
    <name>A0A392U4W0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010723526">
        <property type="protein sequence ID" value="MCI67777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4W0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2671" checksum="A3140082BE3D788B" modified="2018-12-05" version="1" fragment="single">PLSAVEKYDDVGDEYNDEDDVVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8Z5</accession>
    <name>A0A392U8Z5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">protein-serine/threonine phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010745175">
        <property type="protein sequence ID" value="MCI68900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000222">
        <property type="entry name" value="PP2C_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01032">
        <property type="entry name" value="PPM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="9">
        <location>
            <begin position="13"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI68900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8835" checksum="8EF239F123AC5DF5" modified="2018-12-05" version="1" fragment="single">DRSSKRNGSEVLSYGSVSTIGTRKEMEDAVSVEIGFAVKDSEKCDFFGVYDGHGGAQVAEACKERFHQVVAEEVERCGKDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U996</accession>
    <name>A0A392U996_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010768351">
        <property type="protein sequence ID" value="MCI70079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U996"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7306" checksum="17203F8FF931E4D1" modified="2018-12-05" version="1" fragment="single">CMAIYSNNELRVVAAVYMSGLQQPVIPAIEATMPMEVIDDGHFWHAEALNRTNGDTMNLGTLLKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAE2</accession>
    <name>A0A392UAE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010741063">
        <property type="protein sequence ID" value="MCI68695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6727" checksum="91F223FE599FFD75" modified="2018-12-05" version="1" fragment="single">APENTTWENWEDLCMDYNLEDKVNFEEGSIDTDKGGAGSNGPEDNIESNIAGKPKRNIVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAI5</accession>
    <name>A0A392UAI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010777662">
        <property type="protein sequence ID" value="MCI70521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7265" checksum="AFE843A8DE745193" modified="2018-12-05" version="1" fragment="single">MTQSLAHRQCLKQQLYFYRMVENKPVVEQLEEFNKIIDDLANIDLNLEDQDKTFHLLCALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCT7</accession>
    <name>A0A392UCT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010794297">
        <property type="protein sequence ID" value="MCI71333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7202" checksum="795BC6AFDE9CB7CE" modified="2018-12-05" version="1" fragment="single">MQVLPSAHRAGAGGALRHDAEQVWESFSQLRAVQEGWRVAPASAEEFGSFDHLRVAQEGWRVALGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL68</accession>
    <name>A0A392UL68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010837087">
        <property type="protein sequence ID" value="MCI73374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4218" checksum="1AC33C2C9DAF96FC" modified="2018-12-05" version="1" fragment="single">IRKKMLVEVARHGKKSNAHSSARRELCCKCSCEKRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ20</accession>
    <name>A0A392UQ20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010890042">
        <property type="protein sequence ID" value="MCI75743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5870" checksum="7B37E7A431DFD72D" modified="2018-12-05" version="1" fragment="single">MALLSTVKADHPFSTNISPVPQSSASETLVLLQWALSNLVTHFSTLIAMTTTPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXW4</accession>
    <name>A0A392UXW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011004667">
        <property type="protein sequence ID" value="MCI80848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4748" checksum="2524453E2BF03EE2" modified="2018-12-05" version="1" fragment="single">MKASQSRQKSYHDKRRKDIEFQEGVHVFLRVTSTTGVGRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V035</accession>
    <name>A0A392V035_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011002703">
        <property type="protein sequence ID" value="MCI80762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V035"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2784" checksum="273D152B662FAF50" modified="2018-12-05" version="1" fragment="single">MSDAVELGQGNPGCAGSEHVAVDDVRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V943</accession>
    <name>A0A392V943_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011055568">
        <property type="protein sequence ID" value="MCI82960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V943"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6030" checksum="4CD7FD77EF34D9EA" modified="2018-12-05" version="1" fragment="single">MASVSHNHSDGDHDTVPRSPPPEYDPVLSPVGNDQEQVPVDNTGDPRDGRETSFSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9K9</accession>
    <name>A0A392V9K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011071104">
        <property type="protein sequence ID" value="MCI83611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7319" checksum="410674160E2E853E" modified="2018-12-05" version="1" fragment="single">EDDGVLEPVKGLDVKYYHSRFKSGPVNNRGDNGGQYDNEEGGEDQGMQDIMEEIDRFDGGAIPTQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIA8</accession>
    <name>A0A392VIA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011160192">
        <property type="protein sequence ID" value="MCI87203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7089" checksum="117980B01E66E38B" modified="2018-12-05" version="1" fragment="single">TEYYLTREENMSSEELGGLEKLQAYVNGFAPARCVNRAGEPVVDAKGIERMEKRLINTKELLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLQ1</accession>
    <name>A0A392VLQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011216937">
        <property type="protein sequence ID" value="MCI89338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4325" checksum="31A4BA960A6A7C3A" modified="2018-12-05" version="1" fragment="single">MVSSSRKNDGNHRSGATEKWKGVRSFNSEEMEERRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNW6</accession>
    <name>A0A392VNW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutamate receptor 3.6</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011233655">
        <property type="protein sequence ID" value="MCI90046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5229" checksum="960301C7640DA533" modified="2018-12-05" version="1" fragment="single">MRAILIQQKCVEALKGEAQMLAHLSTTEKIEMNDKELSAIILCLGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSC2</accession>
    <name>A0A392VSC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">G-type lectin S-receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011223541">
        <property type="protein sequence ID" value="MCI89595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3294" checksum="3B3F44ED096CD2D0" modified="2018-12-05" version="1" fragment="single">EELNPKISDFGMARIFGGGDDPVNTSRIVGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W807</accession>
    <name>A0A392W807_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011423629">
        <property type="protein sequence ID" value="MCI96774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W807"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3733" checksum="63D06CB77C31A4D1" modified="2018-12-05" version="1" fragment="single">MPAPAPGAMQAAPGVRTSKQPLSCFSYGAWREKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W826</accession>
    <name>A0A392W826_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011368003">
        <property type="protein sequence ID" value="MCI94840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W826"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5368" checksum="5561E31E467C8819" modified="2018-12-05" version="1" fragment="single">MIAELTETSRSLEERKNQVDLVIAAHKAEEEADQARVEQEDPEEEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W987</accession>
    <name>A0A392W987_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011437162">
        <property type="protein sequence ID" value="MCI97248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W987"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6855" checksum="46ECF715CAB91A8E" modified="2018-12-05" version="1" fragment="single">PATTITITIGITARTNRETPDIRIVTATIKGTISTSEVNAGLTFPIRTNWGRFSGTPLILVQIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWG5</accession>
    <name>A0A392LWG5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0000060</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010000033">
        <property type="protein sequence ID" value="MCH79313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002884">
        <property type="entry name" value="ATP-dependent DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 6" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="4">
        <location>
            <begin position="545"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="3">
        <location>
            <begin position="1093"/>
            <end position="1313"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="5">
        <location>
            <begin position="1357"/>
            <end position="1403"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="13"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="98"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="98"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH79313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1520" mass="172422" checksum="2CABF0CF95A881C6" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXK4</accession>
    <name>A0A392LXK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000079">
        <property type="protein sequence ID" value="MCH79384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04480">
        <property type="entry name" value="RPA1_DBD_A_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003871">
        <property type="entry name" value="RFA1B/D_OB_1st"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165:SF4">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02721">
        <property type="entry name" value="DUF223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Replication protein A 70 kDa DNA-binding subunit B/D first OB fold" evidence="1">
        <location>
            <begin position="11"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="436" mass="49392" checksum="CD7CE3504B14CD90" modified="2018-12-05" version="1">MAMSTLREVEFDDIMAVNPTKTDGIYEVRVLRKWKVPDLSSADGSGSVDLVLIDGHGRKIQASIPDEFLSIFDDRIIEGRVYQMSFLSGRFNFGFYLPSYHRYKFVFDENSKVVPSSNDLLPTYGLSLIGAENILKRRQHYRYLVDVVGVVTSVNHDKDFFPDGRVAQSVTFKLNDQRKSFYCELSGDLVDEFRKRLKDCSNGLPIVVLQFVQIIISQGRTLVVGVEGLTRVFADPSIPEVINYRNGLVVFLSKHLDYSGLCPPTAHVPLSHTLDFIKDYPVRTIAELKANPELGVYIVNARNCDIVKIDPWWFPICKCPRIFEKYIGAFHCEKCNVKKFIASPKVRLTFEVDDETGFALFEVIKYFTEIGFYITPSKVRNVRKRIKNNGKQQNPSNVIPCTTTISELVDEYLVAAAANMSNDDGASSSCSKRPRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY42</accession>
    <name>A0A392LY42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000191">
        <property type="protein sequence ID" value="MCH79554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="482"/>
            <end position="759"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1100" mass="124505" checksum="3A78BBC8D87D47E8" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZE0</accession>
    <name>A0A392LZE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000983">
        <property type="protein sequence ID" value="MCH80369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="348" mass="39092" checksum="59C34D0B2FB3B07D" modified="2018-12-05" version="1">MIKEANELEKVFGTESDYDDEKVEIPILNIVAFVNLPSLYQGVQFQAVHTVTTIPLFRKLDEVSEEGHDNGNENPSAEITKDFDVGIEVEAASEHEFTSSQEYTDGQIEVDLGDSQEANQTNNQVSLNDDDFMKENSNTEEGSSNIEEQFPEDDQILDSRSTASQFPSMPSKGDASETVEDLSSSFLVTRELEKLVSKKHLAIENLPLLTDFLVTHSYVLLKDTSLSNRYKGYAYNCLAELLKFLQTHSVLDVLGSSHSEFVELVQDARKFSFDKDWLDGVEKRTFFPGLQVSQDALQKLLDSKHMLTQHVEDLKHQLASSEAVLKSIIQQEVQILETRAALSDPIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0K6</accession>
    <name>A0A392M0K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001477">
        <property type="protein sequence ID" value="MCH80775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="278"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="431" mass="49379" checksum="F02D100061CDD3D5" modified="2018-12-05" version="1">MNSDTHWAIFLRSRIVRSNSFIGYHIYSSIWSGLKAHSSHLFDNSRWLLGNGNKINFWTHDWSGITIVDLLHIPLDLHQHLSATVSDFIRQQQWNIPLELQMDYPNLMHHLSNVCIPVDQKEDRLIWKHSTSGELTLKDAFQLFSPNGQSQHWAKLIWNAVIPPSKSIWKHFNCFAAQLWAWLANIIQINIVTTSVISVFNICSRGWNQHCGFVISAAVISIFNAIWTCRNNLRFKGIIPNLNNVIGKAFKVDVHYSIAPRIIEIIWQPHVCNWLKCNTDGTSLGNPGQAACAGVFRNSHGEYMGSFAMNLGIANALYAEIMGVILAIEFAIEKHWNFLWIESDSKLATLAFKSPLIVPWHIKNRWLNCLSKVGSLQFIISHIFREGNYCTNKLANLGLSLSELTWWPTAPNCIWEDLAKNRQGLPYYRFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0V5</accession>
    <name>A0A392M0V5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000989</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000809">
        <property type="protein sequence ID" value="MCH80224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="2">
        <location>
            <begin position="168"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="322"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="353" mass="39562" checksum="1130E4E81AD60090" modified="2018-12-05" version="1">MVILRDLDDEEGSSTKFPLPGSSWERQARAHFTRADGSLNSSGYYYEIWGFPVSSSDNFDSDSDSSSGSSSDCVIISPSSFIGKQKNMCRSLVVADLAFTTMEVRSKFTTTEIVELFRKAINLSGSDDESGVITEPVGENEFVTTVNTQPPHYFYMYTNLIQALNIWFPFTPFEGLMLKTLNVAPNQLHPNGWAFINAFEVMCLGFELEPSVGVFFSFYHIKNLTPNTLETVAFLETFNLMDINDLINKEGKKIALEEYLQRMRTISNEDRLKFLARTRQKKNEPEAAVIDPLSQLLVEDEAIKGGKRKRKNEMRRIYVHVPTKGEASAAGGGVEETVQPSPKKRKGPTVSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1D4</accession>
    <name>A0A392M1D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transcription factor TGA3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0001572</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001503">
        <property type="protein sequence ID" value="MCH80798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025422">
        <property type="entry name" value="TGA_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45693:SF7">
        <property type="entry name" value="TRANSCRIPTION FACTOR TGA7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45693">
        <property type="entry name" value="TRANSCRIPTION FACTOR TGA9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14144">
        <property type="entry name" value="DOG1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51806">
        <property type="entry name" value="DOG1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0010">Activator</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="DOG1" evidence="7">
        <location>
            <begin position="1"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="DOG1" evidence="7">
        <location>
            <begin position="169"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH80798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="334" mass="37610" checksum="9CC63284AC045204" modified="2018-12-05" version="1" fragment="single">MKAEAAKADVFYLISGAWKSSVERLFLWIGGYRPSQLLNIIVPKLDALTDAQIVSINNLCFSTLQSEDALSQGLEKLQQIMIKNIQADPLDFRYYGFHMAAAIDKGEVVESFVNQADHLRHQILLYMSRILTVGQAAQGLLAMGEYFQRLRALSSLWSTARSSTQHSRKRLFEIEYGNWVEEQDRQNEELRNALQSNASNTQIHQLVESSLNQYSNLFKMNAEAAKTDVFYLISGAWKTSVESLFHWIGGSLPSQLLNIIVPKIDALTDQQIVSIHNLRLSCQQAEDALSIGLEKLQQSMINNIQADPLDFGNSGFQMVAAMDKLEAVECFIIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2W8</accession>
    <name>A0A392M2W8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002629">
        <property type="protein sequence ID" value="MCH81682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2W8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54277">
        <property type="entry name" value="CAD &amp; PB1 domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="123"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="31302" checksum="149B7E2907087F7E" modified="2018-12-05" version="1">MSYVDEDGDIVRLVDDGDLEDVMKQRMKFLKIDITGNGILPLEFSQWRNNINKYAAIIFSKPKSQPPVIVEVPVQPSAQNVDTRNWYVHRWQEIVDTIGGEVRAGYSFLCTNFLPEPQLSESVCRVMKNLWDSLAPSKVIVFSWQLMFQRLPTRVNLAHRRVPGAIANPHCVRCPEVRETEVHLFSTCSVSLAVWTGIYNWLGLQTVLPSDLCTSFASFGFPFNLCKKRRKGMNMIWHAVVWILWEARNACIFENKASSALDMVEEIKHISLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3K9</accession>
    <name>A0A392M3K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002704</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002947">
        <property type="protein sequence ID" value="MCH81910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058546">
        <property type="entry name" value="RPS4B/Roq1-like_LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF3">
        <property type="entry name" value="OS09G0267800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23286">
        <property type="entry name" value="LRR_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein RPS4B/Roq1-like leucine-rich repeats" evidence="2">
        <location>
            <begin position="57"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="380" mass="43389" checksum="E63D834C208352F6" modified="2018-12-05" version="1">MTQIPDLSGVENLKVFTVDKCPKLVRFHESIGFMPNLVYLSASGCKELKSFVPKMDLSSLQVLSFNFCKKFEHFPEVMEKMDKPLKIHMINTAIKEFPKSIGYLTGLEYIDLSICKGLKDLSSSFILLPKLITLKIDGCSKQVTSFQRFKERHVMANGYPNLETLHFSGAYLSNEDVNAIIENFPKLKDLKVMHNEFVTLPNCIRGSLHLKSLDVSFCLKLKEFPKLPSSIQKINARYCRSLTSEASSVLWSMVSLEIQRIEIVMPLPKIEIPKWFDYACTEEIPLLWARQKFSVVALALVFREVKKTDNKLFALCEAINSLTGLNECSHCSLHLFIDGREICAKDFRYFNVGANHVLLCDLRVLFSDEEWKDLDASFGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3S4</accession>
    <name>A0A392M3S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0002750</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003011">
        <property type="protein sequence ID" value="MCH81956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="184"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH81956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="686" mass="77012" checksum="EDAABE61897BF5B2" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4D2</accession>
    <name>A0A392M4D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002399</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002522">
        <property type="protein sequence ID" value="MCH81608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22157">
        <property type="entry name" value="F-box_AtFBW1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1280.50:FF:000008">
        <property type="entry name" value="F-box only protein 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="F-box" evidence="3">
        <location>
            <begin position="27"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10909" checksum="BD487A9D00F2D76B" modified="2018-12-05" version="1">MASGSEMDDLEITATNNLFSAVVTLMSPPLPTLPEDVIPQILCRLPVKLLIQLRCVCKSWNALISDSEFLKKHRRMSFWWCSCSKSEIRKICDGHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4N2</accession>
    <name>A0A392M4N2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribosome biogenesis ATPase RIX7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002665">
        <property type="protein sequence ID" value="MCH81708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4N2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21527" checksum="8FBF668EAEE1AB54" modified="2018-12-05" version="1" fragment="single">MKVKTCSKEVFEDVIRILRVVGVMVESSSIALSFWNISWVLWSLLAHGLEYRTLKCIHGTGLVIFRAYFHGGIAFQVAFDVAHQIDGWKVFSFAVQATTCCLCGKDILNCLRKYEEIFVTCFLLASRYGGCIFHHQNLCTITAYRPEKKKKDAEGQNSQDAKDAEEEVEQKRVIMLRHLNIAGLQSGNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5I0</accession>
    <name>A0A392M5I0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003463</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003986">
        <property type="protein sequence ID" value="MCH82652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5I0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF470">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13520" checksum="C16BD1B53D8F346A" modified="2018-12-05" version="1" fragment="single">VSCSSVEAEYRALAAATRELQRLSYILRDLAQPCIRQDVLYCDSQSAMHIAANPVLHERTKHLDIDCHIVRLKVQEGLMRFLPVPSASQVADIFTKASHPRPFHALVVKLGLLDIFHPYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5L9</accession>
    <name>A0A392M5L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003412</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003916">
        <property type="protein sequence ID" value="MCH82601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5L9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF271">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="2">
        <location>
            <begin position="82"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="22083" checksum="0AD43739B662C80A" modified="2018-12-05" version="1" fragment="single">NESEAIKHIVENVIRLLDKTDLFIANNPVGVESRVEDMIQLLNQDIEQSNDVLLLGMWGMGGVGKTTIAKAIYNKIGRNFEEIGISRLVERSLVTVDDKNKLRMHDLLRDMGREIIREKSPEDLEERCRLWFHEDALHVLSEQSGTKAIKGLSLKLPRANAKCFSSKAFKKMKRLRLLQLSGRKFSFHRVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5V9</accession>
    <name>A0A392M5V9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Transmembrane 9 superfamily member</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0002576</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endosome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002763">
        <property type="protein sequence ID" value="MCH81784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072657">
        <property type="term" value="P:protein localization to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004240">
        <property type="entry name" value="EMP70"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10766:SF110">
        <property type="entry name" value="TRANSMEMBRANE 9 SUPERFAMILY MEMBER 8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10766">
        <property type="entry name" value="TRANSMEMBRANE 9 SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02990">
        <property type="entry name" value="EMP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0967">Endosome</keyword>
    <keyword evidence="8" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4 10 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="245"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="277"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="318"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="350"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="394"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="433"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="473"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="504"/>
            <end position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH81784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="543" mass="62507" checksum="3D43DE96AF9EAA8F" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5X7</accession>
    <name>A0A392M5X7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Casein kinase I isoform delta-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003311</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CK1 Ser/Thr protein kinase family. Casein kinase I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003774">
        <property type="protein sequence ID" value="MCH82503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5X7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050235">
        <property type="entry name" value="CK1_Ser-Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11909">
        <property type="entry name" value="CASEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="20414" checksum="073E4C279F1E4459" modified="2018-12-05" version="1" fragment="single">PRDKSGQSITFLHLPAREFKHDLPLSLAYIIDYGLGKMYLNHETQKHIRYKKDKNLTGTGRYASVNTHRGNQQSRRDDLESLGYVLLYFLRGRLPWQGMKGETKEKRLNMIGYMKMCTPIEVISLTMYLIGLYRSIHEVDPVLEHRPLNHHNKHTEAVFHFLGSMLRSLSPKHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M669</accession>
    <name>A0A392M669_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004391">
        <property type="protein sequence ID" value="MCH82927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M669"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017305428" evidence="2">
        <location>
            <begin position="18"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="26293" checksum="CB4E4418407A72DE" modified="2018-12-05" version="1">MGISVIVLLHIVFYVSAYVTFYEDVPFFARPDPTESTPQVLPISSFEFETFVIAHKPTQPQTGPEFKRYSISCERKCVRVLDTVPTDSNNSVKETNTNEETAPPLSGDSDNVPILSPAVVSPSPSVDLPIALHKACHHPTMPLFLLYLLSLFLRLSRKNYPTCSNKKEELPHPGWRQATIDEITALESTGTWKLVPLPPKKSTAGCWWVFAIKVGPDGQLPRWHLFVFSCQWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6D0</accession>
    <name>A0A392M6D0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003794</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004476">
        <property type="protein sequence ID" value="MCH82980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1211">
        <property type="entry name" value="OS09G0313500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="2">
        <location>
            <begin position="111"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="227" mass="25800" checksum="4A84FFDABEA65C9A" modified="2018-12-05" version="1">MMDIFNAGKTGSTIIITTRDEIVARSFQIVMCVHYLRPLESKDCWSLITRHAFGECEDQQQSNLEEIGRKIAKKCDGLPLAAVKVAALLRTKLSPNDLNYVLGDNILELIVFPKKAILEKKRVVQLWIAEGLVDSSTGQAGLEKDGEEYFDILVSRSLIQRRSTDDEEASFEMNNLIHDLATMVSSPYCIRLDEQIIHEKAVKDSLNYPRTWENWLIYATLTLVTLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7L4</accession>
    <name>A0A392M7L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-D-apiose/UDP-D-xylose synthase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004660">
        <property type="protein sequence ID" value="MCH83105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050177">
        <property type="entry name" value="Lipid_A_modif_metabolic_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43245">
        <property type="entry name" value="BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43245:SF13">
        <property type="entry name" value="UDP-D-APIOSE_UDP-D-XYLOSE SYNTHASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="230" mass="25891" checksum="33E9A2DA6BD87FA0" modified="2018-12-05" version="1" fragment="single">DPAYYVLKEDESPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGESQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTKVYSKVSGDQPPETPTIDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAQPITS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7N6</accession>
    <name>A0A392M7N6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding transcription activator 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005278">
        <property type="protein sequence ID" value="MCH83497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7N6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005559">
        <property type="entry name" value="CG-1_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51437">
        <property type="entry name" value="CG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CG-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="19540" checksum="1E0AB4C9BC2C8A11" modified="2018-12-05" version="1" fragment="single">KLEHIVLVHYREIEEGCKSGISNLPAVPVTPVGSSQSSSVPSSAKISSPISVVQVSLTSSANEIDQHRASEYEDDKLQNCPQVSSHAQSTSNSMHHCAPQLSLEATGFSELLRNPFISSRTSLPCFSPGNDVPPWAFIQNSSRNGINMTQDGVILRDRPITDVYMHPIITGASQTVNQVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7Y0</accession>
    <name>A0A392M7Y0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004408</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005432">
        <property type="protein sequence ID" value="MCH83582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="186"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="78"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="296" mass="32759" checksum="97185E3DD97C0D83" modified="2018-12-05" version="1" fragment="single">MDIGDLINKEGNSDALEEYLQRMRTISNEDRLKFLAKARQKKTEPEGTDPGRITLVIPNKGDTFAAGGGVDEAIPPHSPKKRKTSTVHRGRTMALTSGSTAPVGGLEGDDKDVPDVDSQLGTISLPPPAASSVFPSFWDPLFNPVEFIERQLCMVGDTSRFAATSSDDLRRMSLGHELXGMLLNYVLSARQEHEKYTATKDKLSKEIEDLKTSWDGDISRLKKEYEDKLEKVKENYAAEEKKLKEDAKXQGELVTKLTKERDEAVTSLETLKQEKTTLEGDVSTLEASVAAQYEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8K3</accession>
    <name>A0A392M8K3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0004646</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>5-methyltetrahydropteroyltri-L-glutamate + L-homocysteine = tetrahydropteroyltri-L-glutamate + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21196"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58140"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="ChEBI" id="CHEBI:58207"/>
            <dbReference type="EC" id="2.1.1.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetE route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the vitamin-B12 independent methionine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.14" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010005810">
        <property type="protein sequence ID" value="MCH83820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8K3"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003871">
        <property type="term" value="F:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03311">
        <property type="entry name" value="CIMS_C_terminal_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013215">
        <property type="entry name" value="Cbl-indep_Met_Synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002629">
        <property type="entry name" value="Met_Synth_C/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30519">
        <property type="entry name" value="5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08267">
        <property type="entry name" value="Meth_synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01717">
        <property type="entry name" value="Meth_synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="UROD/MetE-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Cobalamin-independent methionine synthase MetE N-terminal" evidence="14">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Cobalamin-independent methionine synthase MetE C-terminal/archaeal" evidence="13">
        <location>
            <begin position="239"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH83820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="382" mass="41783" checksum="E831551BCC2924AB" modified="2018-12-05" version="1" fragment="single">DLKAAGASWIQFDEPTLVLDLEPHKLQAFTAAYSDLASSLSGLNVLVETYFADIPAEAYKTLTGLAGVTAYGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLTASLATLNGLEQTVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVVEVNALAKALAGQKDEAFFSSNSAALASRKTSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTPELRRVRREYKATKISEEEYVTSIKEEIRKVVELQEKLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAG1</accession>
    <name>A0A392MAG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005092</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WEB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006536">
        <property type="protein sequence ID" value="MCH84261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009904">
        <property type="term" value="P:chloroplast accumulation movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009903">
        <property type="term" value="P:chloroplast avoidance movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008545">
        <property type="entry name" value="Web"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32054">
        <property type="entry name" value="HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32054:SF43">
        <property type="entry name" value="WEB FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05701">
        <property type="entry name" value="WEMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="302"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="7"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="78"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="145"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="159"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="169"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="185"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="469" mass="51732" checksum="6EF3847125AECD12" modified="2018-12-05" version="1" fragment="single">MEEVDNKPTSSRNVEPNSLAETTQENTDIIITPTINHSSDEASINSSDDNNIVEHETHFRANNLSEIESKSTNASDDQSIRQEDEHPLNDNSTSNPKEKVQEQDEYLPIAADSEPEALEDTFNRTQGGGSTVTASGGDVDDNHMELSTSSSVTEGLQIDPKDSPRTEVIDSSQENLDSTSNAEVHVTEESQHEPVVEDSKQGSLEDIVNMLKDVAAGNQMELSASDSETKELENDLKELKAIVSTIKGSDVAVDSPTNDKQIAEKRGIIDTASPFESVKEAVSKFGGIVDWKAHRMVTVERRKHVEQELEKAHDEIPEYRKRSEVAEQEKIEALQELDSTKRLIEELKLNLERAKTEERQAKQDSELAKLRVEEMEQGIAEDSSVAAKAQLEVAKARYTSAITELTSVKEELDALRVEYASLVDEKGEAINKAEVAVAASKQVEKAVEDLTIELIATKESLETAHSAHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBM6</accession>
    <name>A0A392MBM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005337</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006921">
        <property type="protein sequence ID" value="MCH84505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="352"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="388"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="398" mass="44859" checksum="04FF34D3BF60C619" modified="2018-12-05" version="1" fragment="single">MLMNFRESGIEEIVVAKSMSLEKLCVGDILPVLFFCWVSPRFWLPFDKGFGRGQRPRFLMAKEPAEDHHLVDTIMDPMLDWVGPEPRGIASVITPIEGGVHTIVEDREEGQEKNWNVFCPXXXXXRVRLPFSDLAAGVFGWLNLAPSQIHLKLLAFIRAFEIVCEYLEVEPTLPLFFWIFKLQRQPAINGKHGWVSLKQQIKLFKMFIDSVRGFKERYYVVKPITPFASDSLYRTEVVTKEDGSARLDADGDETLSDDERVGIAKLKAFVDKFQPTRYVTKTGAPKLNSKGKPQIEARYINTKALLECKSRAEHKMLLDNMADFADELLKIAADQKAPKKAKKRVNSRIGIVLEQSGPGNSSSPGSVSSSLGGVNMGSPMVRKPPPKRQREEDPVIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX9</accession>
    <name>A0A392MCX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Zinc finger CCCH domain-containing protein 69-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0006223</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008400">
        <property type="protein sequence ID" value="MCH85377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16521">
        <property type="entry name" value="RING-HC_MKRN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1000.10">
        <property type="entry name" value="Zinc finger, CCCH-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045072">
        <property type="entry name" value="MKRN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041367">
        <property type="entry name" value="Znf-CCCH_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018957">
        <property type="entry name" value="Znf_C3HC4_RING-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000571">
        <property type="entry name" value="Znf_CCCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017907">
        <property type="entry name" value="Znf_RING_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11224">
        <property type="entry name" value="MAKORIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11224:SF43">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE C3H69-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00097">
        <property type="entry name" value="zf-C3HC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18044">
        <property type="entry name" value="zf-CCCH_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50103">
        <property type="entry name" value="ZF_C3H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00518">
        <property type="entry name" value="ZF_RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C3H1-type" evidence="9">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="domain" description="RING-type" evidence="8">
        <location>
            <begin position="148"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C3H1-type" evidence="6">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="44"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH85377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="26839" checksum="DCF8BEAE198F6E3A" modified="2018-12-05" version="1" fragment="single">VCSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAKVASNWVPKVTKAPAPDKRGVRSLQRKHQDSSDVGESSTASARPHDIFCTFAAANCPLGDGCSRVHGNQCLYCRKYCLHPTDKKEKESHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTSGIEISSNSNTVRTCPVCRKLSYFVIPSGIWFTTKEEKQEIIDNYKANCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD72</accession>
    <name>A0A392MD72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007263">
        <property type="protein sequence ID" value="MCH84718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42820:SF17">
        <property type="entry name" value="OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42820">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13561">
        <property type="entry name" value="adh_short_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9459" checksum="EFD39A8D44E9CCCC" modified="2018-12-05" version="1">MRAASVQLATHGIRVNSVSPSGLATPLTCKLLGMSKENAQENYRKYSRLEGVVLTPKHVADAVLFLVSNEAEFITGLDLRVDGGFAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDH8</accession>
    <name>A0A392MDH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multiple C2 and transmembrane domain-containing protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0006009</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MCTP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008021">
        <property type="protein sequence ID" value="MCH85165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd08379">
        <property type="entry name" value="C2D_MCTP_PRT_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.150:FF:000090">
        <property type="entry name" value="C2 domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047255">
        <property type="entry name" value="C2D_MCTP_PRT_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013583">
        <property type="entry name" value="MCTP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047259">
        <property type="entry name" value="QUIRKY-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425:SF50">
        <property type="entry name" value="FT-INTERACTING PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425">
        <property type="entry name" value="PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08372">
        <property type="entry name" value="PRT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 8 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="284"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="329"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="428"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="domain" description="C2" evidence="9">
        <location>
            <begin position="44"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH85165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="486" mass="56242" checksum="27B87A471C41A7B1" modified="2018-12-05" version="1">MDRRLDHKPVNTRWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNASGLMPMKTSNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPTGVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME21</accession>
    <name>A0A392ME21_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008371">
        <property type="protein sequence ID" value="MCH85365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="2">
        <location>
            <begin position="94"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16419" checksum="CF09D31E6456DF6E" modified="2018-12-05" version="1" fragment="single">PNYGRAVANNANVEESQDNDDVRSTKGTESFTFTKSQYEKLVNLLQSTTTAQNAGSSAQVNGASTSNLASTYVNPHSGNASIVYSCNNSSYGAWIIDSGASDHICSNLDLFDHHHTITPIQVKMPNGTIAYAKHAGSIKLGPGKEEFEDDWFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME94</accession>
    <name>A0A392ME94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Katanin p80 WD40 repeat subunit B1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006689</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009225">
        <property type="protein sequence ID" value="MCH85837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008352">
        <property type="term" value="C:katanin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007019">
        <property type="term" value="P:microtubule depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19845">
        <property type="entry name" value="KATANIN P80 SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19845:SF15">
        <property type="entry name" value="KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1 HOMOLOG KTN80.2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="19"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="61"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12094" checksum="425EA24E0BAD6946" modified="2018-12-05" version="1" fragment="single">MDTNLKIWDNRKKGCIHTYKGHNQGISTIKFTPDGRWVVSGGHDNVVKVWDLTAGKLLHDFNFHDGHITSLNFHPLEFLLATGSADKTVKFWDLETFELIGSARRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEY1</accession>
    <name>A0A392MEY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RING-finger ubiquitin ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009632">
        <property type="protein sequence ID" value="MCH86046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9970" checksum="700D077E86999A0C" modified="2018-12-05" version="1">MLFVQVDYTAVFVFRLLMFVDNGFAAGMGLTFGSCYAAYVVYLMVPASNYKPEVVVLNCNVDCSAKIHLQPESKDWASRNSPRNVVLEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHS1</accession>
    <name>A0A392MHS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative polygalacturonase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011395">
        <property type="protein sequence ID" value="MCH87037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051801">
        <property type="entry name" value="GH28_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31339:SF12">
        <property type="entry name" value="ENDO-POLYGALACTURONASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31339">
        <property type="entry name" value="PECTIN LYASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="480" mass="53463" checksum="BD29D1FB44394BBC" modified="2018-12-05" version="1" fragment="single">EPPDKVAASVFSRNIHRAAIKESSLKTISVEFTSYTATTTITYHLMHSSQLTTYVNNYGAFLALSSIFNSAVRDIVTTTNGIVAMAHPNVYAFTMTKSFYQLFDEMPECHTTAWVTFTTANAAVLDQIPMATCAHVRGIKFKALYIGRVFTWQLQQISFTINVTFLVVFLGSMGLSIECRVASGYEKLEYPDINCRKYIAILTYFGGVDDGKTSSTKVFPYAIRNLSQYAYDSGALLVVSHGKWLIESLNLTGHFIIFLQNEVVILTSQDELEWPLLHVLASYGRGRDAPDEMFNSLNFETNLTVAVITSYNGPIDGHGSYWWNNLHKDELKLIRPYLIAFMSFNHIQLLILILINSPSWIQDCQTVSSDDCVAIKSGLPECGIKFGMTSXXXXXXXXXXXXXXXDSSRIPLSTNIKLVQATFTATISKYEGLDEDVAFTFDMVVQNYATTGFTTLCFFLQFNQGVFANLSTHKAGGCAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHT2</accession>
    <name>A0A392MHT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication protein A 70 kDa dna-binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011098">
        <property type="protein sequence ID" value="MCH86871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="357" mass="40165" checksum="871087DFCD585769" modified="2018-12-05" version="1">MKDLRPISLCNVLYKMISKLLANRLRGCLDKCVSEEQSAFIEGGSILDNALIAIEVIRALKRRTRGMKGELALKIDISKAYDKVDWGFMRGMLERLGFSNKWIHWMMXXXXXXXVSSVNYSVLVNFEKVGPIFPGRGLRQGYPLSPYLFILITEGLTTLIKRSLASGDIHGVQICRGAPAVSHLLFADDCFLFCRATVAEANHLMKILKTYEEASGQEINLTKSEVFFSRNLSIAAQEDLSKIMGVRHVLGTGNYLGLPSMIGRKKKDVFVYIKDRIWKRINSWRGIALSRAGKEVMIKSVLQAISSYVMGIYLLSESTIKDIERMMNSSLGPYDTTERPRRYGVPGLAYVQFGDDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHW0</accession>
    <name>A0A392MHW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011157">
        <property type="protein sequence ID" value="MCH86901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9957" checksum="904F85405A6D5970" modified="2018-12-05" version="1">MLQDFVFIKYTQTLKKCYERDNVIDPVIMDDIDTSNEWLMGDEDSEGQAQHDLVFDDDDFSWLDVEIAIGAAEPIINTRSQAALQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI21</accession>
    <name>A0A392MI21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0008022</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the plant DMP1 protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011638">
        <property type="protein sequence ID" value="MCH87156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010256">
        <property type="term" value="P:endomembrane system organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007770">
        <property type="entry name" value="DMP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31621">
        <property type="entry name" value="PROTEIN DMP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31621:SF55">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05078">
        <property type="entry name" value="DUF679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH87156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="227" mass="24937" checksum="339F1AF48AC60FEF" modified="2018-12-05" version="1" fragment="single">MDREIETVPPTTTARSSTLIXXXXXXXXXXXXXXXXXXXXIPPPLNAEIPQIPPIPPPLNAEIPPIPPPLNEEIPPIPPPLNAEIPRARINALINNSGGMGSLIKLLPTGTVFFYQILNPVVTNSGDCNNTYKILTSTLLVICGFSCFISTFTDSYTGTDNKRHYGIVTIKGLWPSPPELNMVDLSKYRLKFSDFVHAAYSLLIFALLGLLDTNTVQCFYPSFESTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIP1</accession>
    <name>A0A392MIP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxyl-terminal peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012086">
        <property type="protein sequence ID" value="MCH87380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053168">
        <property type="entry name" value="Glutamic_endopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004314">
        <property type="entry name" value="Neprosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31589:SF233">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF239)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31589">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03080">
        <property type="entry name" value="Neprosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52045">
        <property type="entry name" value="NEPROSIN_PEP_CD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Neprosin PEP catalytic" evidence="1">
        <location>
            <begin position="47"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS52045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17181" checksum="2943DB4419C55C92" modified="2018-12-05" version="1" fragment="single">MQNRSSYGKTMNKCPEGKVPIYNKTGRHQIITNSSSKLQVDDFQQYSQSAPGYHTVTLDTTQNMIFHGAHAGIAGYGLSLDANQYSISSIWIESGPPIELNSIKVGLGADGYKKTGCFNNRCSGYVQVDRNKGLGSPVSPLNSIGSTEKLSTFIKIKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ02</accession>
    <name>A0A392MJ02_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative BTB/POZ domain-containing protein DOT3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007548</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010771">
        <property type="protein sequence ID" value="MCH86688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ02"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="NPH3" evidence="4">
        <location>
            <begin position="144"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="432" mass="49386" checksum="A51B28CA4BB0FC13" modified="2018-12-05" version="1" fragment="single">YPLISKCGYIGRLEVQPLISNSGNVLKLENFPGGSETFETILKFCYGLPIDFNSDNVAALRCASEFLEMTEELEDGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWVENIQIVRRCCDSIALKASKNKHTSEDATSNQESWWFNDVATLRIDHFMRIISAIKAKGIKPETIGKCIMQYAKRWLPGMYEELEGLRGYGHEKSNLQFTIFGRKKQESTGHSKEQTTIIESLISIIPTQQEAVPCKFLLQMLKMAMMYSVSPALISDLEKRVGMVLEDAEVNDLLIPRYQNRDQGKMVSMPNSPEDCTMQDIDVVQRIFEYFLMHEKQQMQLQQKSGKLNRLMDNYLAEVATDPNLSITKFQVLAELLPEYTRSFDDGLYRAIDTYLKTHPSLTDHDRRRLCKIMNCEKLSLDACIHAAQNDRLPLRTVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJN5</accession>
    <name>A0A392MJN5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin carboxyl-terminal hydrolase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008252</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012092">
        <property type="protein sequence ID" value="MCH87383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00121">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050804">
        <property type="entry name" value="MCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236:SF35">
        <property type="entry name" value="MATH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236">
        <property type="entry name" value="TRAF-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22486">
        <property type="entry name" value="MATH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00061">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MATH" evidence="2">
        <location>
            <begin position="8"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10331" checksum="E9D098261FDE6FE0" modified="2018-12-05" version="1" fragment="single">MAVEDPPAGRFTWTIDNFSRLPKKHYSDVFTVGGYKWRILIFPKGNNAEHLSMYIDVADSVTMPYGWTRFAQFSLTVVNQVHSKYSIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK15</accession>
    <name>A0A392MK15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">P-loop nucleoside triphosphate hydrolase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013015">
        <property type="protein sequence ID" value="MCH87842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12389" checksum="EC2BC62E6B4D6E1D" modified="2018-12-05" version="1">MRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKAEMNSFLFLLVLPSPKPSLADSTMMIKFGFSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKW0</accession>
    <name>A0A392MKW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Caseinolytic peptidase B protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007765</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011161">
        <property type="protein sequence ID" value="MCH86904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050773">
        <property type="entry name" value="CbxX/CfxQ_RuBisCO_ESX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43392">
        <property type="entry name" value="AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43392:SF2">
        <property type="entry name" value="AAA-TYPE ATPASE FAMILY PROTEIN _ ANKYRIN REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="2">
        <location>
            <begin position="38"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="2">
        <location>
            <begin position="71"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="103"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="114"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13629" checksum="7F64E841AE96B7E3" modified="2018-12-05" version="1" fragment="single">MAHTPLHVSAGNNRTDIVKFLLEWQGPERIEIEAKNMYGETPLHMAAKNGCSEAAQLLLAHGASVEARANNGMTPLHLAVWHSLRAEEFLAVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML83</accession>
    <name>A0A392ML83_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007898</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010011387">
        <property type="protein sequence ID" value="MCH87034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002884">
        <property type="entry name" value="ATP-dependent DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF101">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="3">
        <location>
            <begin position="216"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="380" mass="42663" checksum="1C33FAEFC6812872" modified="2018-12-05" version="1" fragment="single">IRRAKLIIWDEAPMMHKHCFEAVDRTLRDIMKEKRYPFGGKVVVLGGDFRKILPVIPKGTRYEIVQSAINSSDLWQHCEVLTLTTNMRLLTGSTDSDVEGRKSFSDWILGVGNGNIGDADDEYIKIQVPRDLLIPTSGDPLTAIVESTYPDMLHNMNDPSFFRDRAILTPKNTIVNLVNEYILDLIPGEEKIYLSYDSPCSSNSNVDTPDDLHTPEFLNSIVSSGVPNHKLRLKVGVPVMLMRNMDQSSGLCNGTRLIITKMGTYVVEGKIISGSNIGDRVCIPRLSLIPSDKRLPFKFQRRQFPLSVSFAMTINKSQGQSLKHVGVYLPQPIFSHGQLYVAFSRVTSRQGLKVLITNEDGEDSDLTDNVVYKEVFRNIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLC0</accession>
    <name>A0A392MLC0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009206</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013945">
        <property type="protein sequence ID" value="MCH88322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="32"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="230"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="234"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="29050" checksum="30DED80FAC2C2118" modified="2018-12-05" version="1">MEENQPKIIKEYTICLEELRSQGFNLQASVQRQGWENYFKMLDGPIYDKLVLEFWKNARVKSKTSGTPEIKSKVVGHSVTITLSRIATAIGCPEEGIDIEKYKYNSGLTANIIKKLYDFSDGQNETTLLKPLVSMWYKILVTNFLPKEKYINLSLNIDKHFLYFLLMGHKISLPLTFLNHMKACIETSKSGRSSSFPTEESSHSFSLNMVVKKARCNRLSECLDTSLGPKFQVDKQTNNSAEASSSSQPILATSSNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLP7</accession>
    <name>A0A392MLP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP deaminase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009325</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014171">
        <property type="protein sequence ID" value="MCH88436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="150"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="23657" checksum="ADD9D39C5D6F680C" modified="2018-12-05" version="1" fragment="single">MDPSSSTSLPQSLHLAMAALLGASFMAISAFYIHRRTVDHVLHRIVEIRRAPPAVTTDEANSDEEENYGDDLSGFDGGETETDNDSRNYQGTLSRSVDENMNLLRNYRVSSSMPDVVSATEWFPDGRKNRSSSHDNLNSVPLGLPSLRTSSKLESSQISSSYKRIASVGRINTPRSPGRNTFENADDSDDDGTQLSEDNRIPFYPVTRDSSNSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLS2</accession>
    <name>A0A392MLS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription elongation factor SPT6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008504</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SPT6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012599">
        <property type="protein sequence ID" value="MCH87628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008023">
        <property type="term" value="C:transcription elongation factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031491">
        <property type="term" value="F:nucleosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034728">
        <property type="term" value="P:nucleosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140673">
        <property type="term" value="P:transcription elongation-coupled chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.2740:FF:000002">
        <property type="entry name" value="Transcription elongation factor Spt6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2740">
        <property type="entry name" value="Spt6, Death-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.850">
        <property type="entry name" value="Spt6, helix-hairpin-helix domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041692">
        <property type="entry name" value="HHH_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042066">
        <property type="entry name" value="Spt6_death-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032706">
        <property type="entry name" value="Spt6_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017072">
        <property type="entry name" value="TF_Spt6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10145">
        <property type="entry name" value="TRANSCRIPTION ELONGATION FACTOR SPT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10145:SF6">
        <property type="entry name" value="TRANSCRIPTION ELONGATION FACTOR SPT6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14635">
        <property type="entry name" value="HHH_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17674">
        <property type="entry name" value="HHH_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="RuvA domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="208"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="341" mass="38669" checksum="D6943FFF3F16F434" modified="2018-12-05" version="1" fragment="single">MEMIEWIMIDITNQVGIDINLGIRHDWLLAPLLFVSGLGPIKAGILHRELLGGSDVRNRKDLAKFGLNTKRVFCNAVGFLQVSCDDPNFVDTAGNILDRTRIHPESYSLAEELARAVVTKHYADANDTQLNAIECIQNDPKLLENFDLNEYADRLETEKDEYKRVTLFDIKMELLHGFKDPRSPYQEPTQXXXXXXXXXXXXXXXXEGERVQATVRRVLARQAFCELESGISGIVFREDFSDDIGDIPLTEKLREGVVLKCKVKLIDKSRCQVNLTCKVSDLKSVGDQSFREMDPYYSQGNIILPSQQESADKKDIANKSFLSRKISHPHFQNITADQAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLX1</accession>
    <name>A0A392MLX1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Profilin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0008850</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Occurs in many kinds of cells as a complex with monomeric actin in a 1:1 ratio.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the profilin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013253">
        <property type="protein sequence ID" value="MCH87969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005938">
        <property type="term" value="C:cell cortex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003785">
        <property type="term" value="F:actin monomer binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00148">
        <property type="entry name" value="PROF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.450.30:FF:000001">
        <property type="entry name" value="Profilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.30">
        <property type="entry name" value="Dynein light chain 2a, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048278">
        <property type="entry name" value="PFN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005455">
        <property type="entry name" value="PFN_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036140">
        <property type="entry name" value="PFN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027310">
        <property type="entry name" value="Profilin_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11604">
        <property type="entry name" value="PROFILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11604:SF37">
        <property type="entry name" value="PROFILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00235">
        <property type="entry name" value="Profilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00392">
        <property type="entry name" value="PROFILIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01640">
        <property type="entry name" value="PROFILINPLNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00392">
        <property type="entry name" value="PROF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55770">
        <property type="entry name" value="Profilin (actin-binding protein)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00414">
        <property type="entry name" value="PROFILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH87969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14069" checksum="3BFBD8B7335C0C22" modified="2018-12-05" version="1" fragment="single">MSWQTYVDEHLMCDIDGTGHHLTAAAIIGHDGSVWAQSSSFPAIKPQENSDIMKDFDEPGHLAPTGLHLAGVKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM07</accession>
    <name>A0A392MM07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009426</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014336">
        <property type="protein sequence ID" value="MCH88536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF26">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="44"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="22061" checksum="A20692DF4DF88AD6" modified="2018-12-05" version="1">MYQDLKKLFWWPSMKRQISEFVYVCLVCQKSKIEHQKPSGLLQPLFVPEWKWDSIAMDFVGGLPKTANGNEVIWVIVDRLMKLAHFIAIKTGMLVPKLAEIYVEQIVRLHGIPSSIVSDRDPRFTSRFWESFQKALGTKLRLSSAYHPQTDGQSERTIQSLEDLLRACVLEQGLYMGGGVGRRFVGMNPEKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM59</accession>
    <name>A0A392MM59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BON1-associated protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009058</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013646">
        <property type="protein sequence ID" value="MCH88175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32246:SF64">
        <property type="entry name" value="C2 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32246">
        <property type="entry name" value="INGRESSION PROTEIN FIC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16943" checksum="F97FC905D48FD4E5" modified="2018-12-05" version="1">MVNENEGLLSWDEKFMLDIPSHARSVTFEVQCKKYKGARPIGVARIALSDFLGDNMSLQSCAQNFSYGLRDWDGRKNGVINFSVRGLTQLQEGLSLEKEQGKGKKKVSSSEFEDARFKDKKNSSHIAIGISMLGVLFLLGHSLLSFVRRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN16</accession>
    <name>A0A392MN16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015068">
        <property type="protein sequence ID" value="MCH88897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11297" checksum="999A79E26F03EC7D" modified="2018-12-05" version="1">MAQLCGAMAQSRPVGQVFHSAFGAMAQGSGAVAQDEHQNIWASSEGGAMAQESCVVAQRLTDSLRHAQGTALWRRRDCYIRKPVLFEKGSIFGSKLSTWTLAVAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPR7</accession>
    <name>A0A392MPR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009519</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014527">
        <property type="protein sequence ID" value="MCH88628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="14230" checksum="AF1F7E1A4A6CEC32" modified="2018-12-05" version="1" fragment="single">MHIHARYLSPPYLKPKPPYQPPILTIGVISSARSEQWHRLSMEDINRTNIILTISGGPLDNRENHQPQSQQQQTLTINHKKLARPILGFGDHEMIDRTPNKEFPRLMIATLAWHNVSRILIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ91</accession>
    <name>A0A392MQ91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cathepsin W</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010149</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015780">
        <property type="protein sequence ID" value="MCH89255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013128">
        <property type="entry name" value="Peptidase_C1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12411">
        <property type="entry name" value="CYSTEINE PROTEASE FAMILY C1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00645">
        <property type="entry name" value="Pept_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <feature type="domain" description="Peptidase C1A papain C-terminal" evidence="5">
        <location>
            <begin position="10"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="246" mass="28513" checksum="959D4C958AC4225D" modified="2018-12-05" version="1" fragment="single">RKRGKKDSGLPKEINWKNSGVLTPVKDQGNTAYCPLIAGVTAMESLITIQRQQRGIEIEKPVQLSMQYIVDYFAERYGKKGFHVSRRGTQMMFVMDFLEEKGLPLEEDYRFKGFDRRGSGVSECRAMKYRIDDYRFLGKPNQERIMQQLVKQXXXXXXXXXXXXXNGTWKKDIIQRPKAPEPKTYSLTHDIVIVGYGETKKGIPFWDVRDSNFTDRGMKGYLKIHRGSNAFGIEQEIYYPIITKAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQI9</accession>
    <name>A0A392MQI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016351">
        <property type="protein sequence ID" value="MCH89533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240:SF15">
        <property type="entry name" value="GAG-PRO-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240">
        <property type="entry name" value="OS08G0508500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="276" mass="30935" checksum="70C0EDEC8565A68A" modified="2018-12-05" version="1">MTFIATISGGILPINDPNRTSKRYKTDPKLEKDKTPTLGFSDSYLVNGIPNEDLPLLITATIAKHNVSRILVDQGSSCNIMYQNLFTKLKHQVNKLQPYNDGPLTAFDSTTTQPLGXXXXXXXXXXXXXXTIFGDNQNPSSIRTIQVKFLIVPCNSTYNYIIGRTTLRSLGAVHSTVHLKMKYHRTNNEVVTIYADSKASKQYLWTTGNNLFTTTCPSTETPDTPVKDADLDPHVDEYISDEEKKAEKPLPLEARIKFERPKPDGEFITVQLDENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRC7</accession>
    <name>A0A392MRC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Folate/biopterin transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009727</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Folate-biopterin transporter (TC 2.A.71) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014947">
        <property type="protein sequence ID" value="MCH88834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039309">
        <property type="entry name" value="BT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31585">
        <property type="entry name" value="FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31585:SF6">
        <property type="entry name" value="FOLATE-BIOPTERIN TRANSPORTER 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03092">
        <property type="entry name" value="BT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH88834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="13856" checksum="E8E17C1186D6BF91" modified="2018-12-05" version="1">MLPARTGLLGAIAMLLLSFHENLHLVLALLALTAGSAGVAIADVTIDACVAQNSISHPSLAADMQSLCAFSSSVGALLGFSVSGIFVHLIGPMGVFRLLTIPAGLVILVGFLLDEPRIENFSYRQLISISSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRL0</accession>
    <name>A0A392MRL0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box SKIP23-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010786</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017113">
        <property type="protein sequence ID" value="MCH89882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051304">
        <property type="entry name" value="SCF_F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123:SF15">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KIB1-4 beta-propeller" evidence="1">
        <location>
            <begin position="9"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21263" checksum="E7F2F1AD929C7E67" modified="2018-12-05" version="1">MIMPEMPPKPYTDVCVFNGRFIAVDSTGRTAAVGPDLSLDLVAEAVFGGDTKILVEGDGELLLVDKYLKPCMNGEMSLEGQGVYEVTIIDSAVRFVVFRLDEKEKKWVELTNLGDRVLFLGENCAFSISASDLGMENGNCVIFIDNVHLFFHSTEPEISVFWLDKRQISPLSDFPCCSKLFWPPPQWVGLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS11</accession>
    <name>A0A392MS11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017905">
        <property type="protein sequence ID" value="MCH90241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="181" mass="20322" checksum="A25BC92D837EF16B" modified="2018-12-05" version="1" fragment="single">PAVITTSMAGVDVRDLIEIKNSCCIFVSRLLKLWKYTGHSDEYKTKICLEFKNACKKVVNAVSNRLGVSVPSLNVTEAVPNLGPITFCDHYLFGLLKMMKGSGESDEDQRKIILELREECIDAVKRVVGKVEMDARNITVDMLEARDELSFLASNFASYFGTAEIVPYKYYVGTFTARFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSL2</accession>
    <name>A0A392MSL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018352">
        <property type="protein sequence ID" value="MCH90461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="61"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17611" checksum="0752753D9F76F536" modified="2018-12-05" version="1">MGLGGAPCTYCGCVAETMLHVMRDCPMVMPIWLKVVHISVRSVFFSSTAEQWIKFNLGNDVGWRFRGSDGEWLGRFTKHIGYGTTYVAELWGVLEGLRQARRLNFNKVELCVDSMVVVKHITSKEKSSLAGRSHVEHIRRLMNLEWEVVVHHSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSN2</accession>
    <name>A0A392MSN2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0011397</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018392">
        <property type="protein sequence ID" value="MCH90481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="253"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="468" mass="53454" checksum="7D861F0DDA2F44F9" modified="2018-12-05" version="1" fragment="single">VLTLPDFTQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALAKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGFDFKIEYKPGKDNQAADALSRMFMLAWSEPHSLFLQELKNKLTNNTHLQQLMEAHSTNNDNNSHYAVREGLLYWQGRLVIPVEDELVNRILQEYHSSPIGGHAGVTRTIARLKTQFYWPKMQEHVKDFVQKCLICQQAKASHTLPAGLLQPLPIPQQIWEDIAMDFITGLPSYGGLTVIMVVVDRLTKYAHFIPLKADYTSKLVAEVFMNHIVKLHGIPKSIVSDRDKVFTSSFWQNLFKLQGTTLAMSSAYHPQSDGQSEIVNKCLEMYLRCFTXENPKSWVKALPWAEFWYNSAFHTSIGMTPFKAVYGRDPPALIRHSYNTQATPDIAEQLNIRDQLIAKLKINLQRAQQIMKAQADKKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTS3</accession>
    <name>A0A392MTS3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dnase I-like superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011863</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019378">
        <property type="protein sequence ID" value="MCH90940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10133" checksum="F79C1912510D6F4F" modified="2018-12-05" version="1" fragment="single">MMFESGFRTTYLQLFCKKTEYAWSPRKDIEYHCYDQFGVSRKGPQDTTDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSISWGSEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTU1</accession>
    <name>A0A392MTU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017537">
        <property type="protein sequence ID" value="MCH90078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="279"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="398" mass="43548" checksum="93698F7E86A8A7A8" modified="2018-12-05" version="1" fragment="single">MSNSTESSPVVNQQTVSPSKEQTYEIIAHAVPITTVHPQSSKKKKTKSSKKEKLSQVSEIYPPSASITVPKSKGKKSKRYVVPRQALTMHELYIMENPFQPNVESKVDASVKDFVVLNVEASVKASGTDLENPKNSENLGGSVLKSCENLNADVGASAKAKIDSVVESLKETVPETDVVPDVDTSLAQENMEDKTIPETPEHVTTSENVKSPDKLMTGNVENLSEEHTVVNSQSYESMKIVSSNNEDDLFADKNVNADMNVVDVDDLVSKERSIEKTHVPSIEKRLRSRSGKVVSSASEPVKTTKAAKKSSLKPVLYGPKKTWSKGVPSTKPKKKNLKRKEASSSDSEYDVEPDAATTAGTSRKSIGGKKVLLSVPTTPIDNISFHFEDHVSKWKYVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWS6</accession>
    <name>A0A392MWS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">AP-1 complex subunit mu-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0011646</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018921">
        <property type="protein sequence ID" value="MCH90724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030131">
        <property type="term" value="C:clathrin adaptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1170">
        <property type="entry name" value="Mu homology domain, subdomain B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050431">
        <property type="entry name" value="Adaptor_comp_med_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036168">
        <property type="entry name" value="AP2_Mu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001392">
        <property type="entry name" value="Clathrin_mu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018240">
        <property type="entry name" value="Clathrin_mu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028565">
        <property type="entry name" value="MHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10529">
        <property type="entry name" value="AP COMPLEX SUBUNIT MU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00928">
        <property type="entry name" value="Adap_comp_sub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00314">
        <property type="entry name" value="CLATHRINADPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49447">
        <property type="entry name" value="Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00991">
        <property type="entry name" value="CLAT_ADAPTOR_M_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51072">
        <property type="entry name" value="MHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="MHD" evidence="5">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH90724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20783" checksum="409FC868CBB3B13F" modified="2018-12-05" version="1" fragment="single">GMPECKLGLNDRVLLEAQGRTTKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEANVEKHSKSRIEIMKIRELFPFIHAVSTATNVEIELPVPVDATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITDEEAAPERKAPIRVKFEIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXC5</accession>
    <name>A0A392MXC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytokinin-O-glucosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020253">
        <property type="protein sequence ID" value="MCH91358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080043">
        <property type="term" value="F:quercetin 3-O-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080044">
        <property type="term" value="F:quercetin 7-O-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000027">
        <property type="entry name" value="Glycosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11926:SF1188">
        <property type="entry name" value="FAMILY PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11926">
        <property type="entry name" value="GLUCOSYL/GLUCURONOSYL TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="327" mass="36833" checksum="847788F4D9017B1D" modified="2018-12-05" version="1">MPFTTQAAEKHALPILLFSPASAAGFYAAMHFRTLLEKGLIPLKDDSYFTNGYLDSKVDCIPGWENFRLKDLPDFIRTTDPNDPKVEFIIESADQFHKASSIVLNTYNELESDNHLASLDSSLLKEDTKCLEWLESKDTGSVIYVNFGSTIVLSQEQLIEFAWGLANSMKPFLWIVRPDLVISGSFILSSVFQNEISNRGFIASWCPQEQVLNHPSIGGFLTHVGWNSTIESICAGVPMLCWPFCADQPTNTKFICSIWEIGIEIDSNVKRENVEKSINELMVGEKAKKMRQNALEXXXXXXXXXXXXXXXXXXXXXXXKELLLKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXD1</accession>
    <name>A0A392MXD1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Protein RER1B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0012564</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RER1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020831">
        <property type="protein sequence ID" value="MCH91635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006621">
        <property type="term" value="P:protein retention in ER lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006890">
        <property type="term" value="P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004932">
        <property type="entry name" value="Rer1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10743">
        <property type="entry name" value="PROTEIN RER1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10743:SF17">
        <property type="entry name" value="PROTEIN RER1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03248">
        <property type="entry name" value="Rer1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH91635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13686" checksum="2732B3AE7EA71FF8" modified="2018-12-05" version="1">MEGTGGSSASATAAAGPPVNQWVQEFSKLFQHYLDKSTPHSTYRWIGTFVIASIYVLRVFYIQGFYIVSYGLGIYMLNLLIGFLSPLVDPELEPSDGGPLLPTKGSDEFKPFIRRLPEFKFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXR4</accession>
    <name>A0A392MXR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0013264</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022439">
        <property type="protein sequence ID" value="MCH92327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="3">
        <location>
            <begin position="32"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="97"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="326" mass="36646" checksum="D17E3CCF5FBF248E" modified="2018-12-05" version="1" fragment="single">MANSADSINHVGPSNSQTKGYQNDTLNPYFLHPNENPNHALVTPLLSGSNYHSWSRAMTMALKSKNKIKFINGSLPKPLDEDPDSLAWDRCNTMIMSWISNSVDPDISQSILWMDSAFEIWEDLKERFYQGDVFRISDIQEEIYSLRQGDSTISAYYTKLKRLWQELDNFRPIPESSCVNNCAAILKMKSYKDSDQVIRFLKGLNEQYSAVRAQIMLMDPLPKIAKVYSLLVQQERQIPLSIDESKVLAVSGVQSNSAGRGYAGNGRGNGKSTRGGRTSGGRGNGKGNKLCSYCGQTNHIVDNCWEKYGYPPHMQHLKTNRTANNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N012</accession>
    <name>A0A392N012_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">FRIGIDA-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0014084</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the Frigida family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024251">
        <property type="protein sequence ID" value="MCH93136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N012"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009908">
        <property type="term" value="P:flower development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012474">
        <property type="entry name" value="Frigida"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31791:SF37">
        <property type="entry name" value="A_TM021B04.7 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31791">
        <property type="entry name" value="FRIGIDA-LIKE PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07899">
        <property type="entry name" value="Frigida"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="3 5" id="KW-0221">Differentiation</keyword>
    <keyword evidence="4 5" id="KW-0287">Flowering</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH93136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11129" checksum="E1DE68D5FB2B097D" modified="2018-12-05" version="1">MRKQFVAAVRFSCAYNLDDKNQLVDMLREYVHTVKLICESSCEKTNSIEIKDKARDQEIASLGTVLQCILDCNLQSADMLDKEIKYRILELKAIKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0C5</accession>
    <name>A0A392N0C5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024023">
        <property type="protein sequence ID" value="MCH93032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0C5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10103" checksum="D40BC5444324D451" modified="2018-12-05" version="1" fragment="single">MDTSLPLVPSNIPNEIEVLFERLKDLPPHDSSLLQEEFTIVSDFTNIVAELQKFESFLSSSQKWKLLSLQMMVDILKSEIPFINSSFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2V0</accession>
    <name>A0A392N2V0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA replication licensing factor MCM6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0015093</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the MCM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026598">
        <property type="protein sequence ID" value="MCH94137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990518">
        <property type="term" value="F:single-stranded 3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000727">
        <property type="term" value="P:double-strand break repair via break-induced replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902969">
        <property type="term" value="P:mitotic DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF43">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00493">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01657">
        <property type="entry name" value="MCMFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00350">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50051">
        <property type="entry name" value="MCM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM C-terminal AAA(+) ATPase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="15613" checksum="AC1B1794EE8F3622" modified="2018-12-05" version="1" fragment="single">AGALMLADNGXCCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIGYAKTLKPKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N382</accession>
    <name>A0A392N382_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Leucine-rich repeat receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0014986</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026326">
        <property type="protein sequence ID" value="MCH94032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N382"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.430">
        <property type="entry name" value="Galactose-binding lectin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF191">
        <property type="entry name" value="DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017220014" evidence="6">
        <location>
            <begin position="17"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="Malectin-like" evidence="7">
        <location>
            <begin position="48"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH94032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="342" mass="38464" checksum="0944AF11D227A3D7" modified="2018-12-05" version="1" fragment="single">MILFFTFLSIITTTISTSTPTRSPPPFLYGNYSTHLNFQARNLSSYHINCGTSTNTTDNFNTTWLSDRYYTGGSTSVVSEPLRFNLPSEKTLRYFPSSSNGKKNCYSFPSLPSARYLLRTFTVYDNYDDKSRPPSFDVALSSTIIFNWRSPWPESTSRDGAYSDLFAFLTTPSAADLCFYGFATDAPIVSSIELVPVDSASYDSLSTGENLILVNYGRISCGSDDHFGPGFTNDTDKFGRSWQPDEAFRTGSEIAVRGLLTENTVNGTDKEPNYFPMKLYQTAVTSAEDELEYELSVDAKMDYMVWLHFAEIDSRVKKVGERVFDVFINGNNATRIDIYKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3C6</accession>
    <name>A0A392N3C6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor bHLH30-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024998">
        <property type="protein sequence ID" value="MCH93468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04873">
        <property type="entry name" value="ACT_UUR-ACR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045847">
        <property type="entry name" value="AIG1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45844:SF3">
        <property type="entry name" value="BHLH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45844">
        <property type="entry name" value="TRANSCRIPTION FACTOR BHLH30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17504" checksum="F12E78C14610EF88" modified="2018-12-05" version="1">MDKASLLGEVIRHLKELKRNAAQACEGLIIPNDNDEISVEEQEGGVNGFPYSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGGRMRNVFVVISCEEHNFDAAEYRQFLAGSVHQALKSVLNRFSVSQDMLGARKRRRISIFSSSSLEDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N403</accession>
    <name>A0A392N403_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">S-formylglutathione hydrolase</fullName>
            <ecNumber evidence="2">3.1.2.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0014828</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the esterase D family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.12" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010025978">
        <property type="protein sequence ID" value="MCH93875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N403"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018738">
        <property type="term" value="F:S-formylglutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046294">
        <property type="term" value="P:formaldehyde catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014186">
        <property type="entry name" value="S-formylglutathione_hydrol"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10061">
        <property type="entry name" value="S-FORMYLGLUTATHIONE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10061:SF0">
        <property type="entry name" value="S-FORMYLGLUTATHIONE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0719">Serine esterase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH93875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7937" checksum="EA24A4E88A242728" modified="2018-12-05" version="1" fragment="single">MANILKVLQCFEHYSAISAFAPVANPTNCPWGQKAFTNYLGDNKSDWEDYDATYLVRKHPNVSTTILIDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7V5</accession>
    <name>A0A392N7V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRF1-interacting factor 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016633</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030356">
        <property type="protein sequence ID" value="MCH95653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9410" checksum="AC49002D8F5BE3A6" modified="2018-12-05" version="1" fragment="single">YQAQLQKNLMYLAAMPDAQPQTPALPPQMAPHPSMQQGFYMQYPRAATVAQQPGEVMLHIQPFGPYSLHPWKYWSMMNREF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA52</accession>
    <name>A0A392NA52_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acyl-[acyl-carrier-protein] hydrolase</fullName>
            <ecNumber evidence="6">3.1.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0032952</name>
    </gene>
    <organism evidence="8 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">10/8</strain>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Plays an essential role in chain termination during de novo fatty acid synthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Plastid</location>
            <location evidence="1 6">Chloroplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the acyl-ACP thioesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.2.-" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010032624">
        <property type="protein sequence ID" value="MCH96552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010081737">
        <property type="protein sequence ID" value="MCI11850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016297">
        <property type="term" value="F:fatty acyl-[ACP] hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.129.10">
        <property type="entry name" value="Hotdog Thioesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002864">
        <property type="entry name" value="Acyl-ACP_thioesterase_NHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045023">
        <property type="entry name" value="FATA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31727">
        <property type="entry name" value="OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31727:SF2">
        <property type="entry name" value="PALMITOYL-ACYL CARRIER PROTEIN THIOESTERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01643">
        <property type="entry name" value="Acyl-ACP_TE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="Thioesterase/thiol ester dehydrase-isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="6" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 6" id="KW-0934">Plastid</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="Acyl-ACP thioesterase N-terminal hotdog" evidence="7">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH96552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI11850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11520" checksum="14F7076FC1349EF3" modified="2018-12-05" version="1" fragment="single">GDVVQVDTWVSATGKNGMRRDWLVRDSKTGEILTRASSVWVMMNKLTRKLSKIPEEVRGEIEPYFVNSDPVVDEDNRKLTKLDDKAEYIRTGLTVRTLFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBU1</accession>
    <name>A0A392NBU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Filament-like plant protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034504">
        <property type="protein sequence ID" value="MCH97270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580:SF5">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16046" checksum="4CA50A7A758BF663" modified="2018-12-05" version="1" fragment="single">SSVINEQLPDRVASTPLSTCIENGSLAVDKYGDDSSVINEQLPDRVASTPLSTCIENGGSLEVDKNGDDSSVINEQLSDRVALTPLSTCIVNGGSLEVDKNENILNGKEGDLNDGSRDISEKLSAAPVNVNAKEDLVKQHAKVAEEAIAAAHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC63</accession>
    <name>A0A392NC63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">CBL-interacting serine/threonine-protein kinase 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0017674</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032963">
        <property type="protein sequence ID" value="MCH96685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895">
        <property type="entry name" value="CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895:SF114">
        <property type="entry name" value="NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH96685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13910" checksum="A5B5021AD41F7884" modified="2018-12-05" version="1">MLVSLILSDGKYFDWISIPIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAEARRYFQQLIDGVDYCHSKGVYHRDLKVCIDSGLECFLHPYHDFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCQ2</accession>
    <name>A0A392NCQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">WAT1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0018467</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035051">
        <property type="protein sequence ID" value="MCH97472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030184">
        <property type="entry name" value="WAT1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31218">
        <property type="entry name" value="WAT1-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH97472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10141" checksum="0BBEBE9BFF94E1EB" modified="2018-12-05" version="1" fragment="single">MGTEKLRSCANFLENSMPYFAMILLQFGYAGMNVIAKLSLNGGMSHYVLVVYRHAIATIAIAPFAIIFERKAQPKITFPIFIQIFLLALLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDH8</accession>
    <name>A0A392NDH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trafficking protein particle complex subunit 11-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018778</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035916">
        <property type="protein sequence ID" value="MCH97782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14374">
        <property type="entry name" value="FOIE GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14374:SF0">
        <property type="entry name" value="TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="263"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="279" mass="30633" checksum="0937EE1542FDCB24" modified="2018-12-05" version="1" fragment="single">QSGKLECLSVIAKIGSHFAICCRAESPASLDSLPLWTLEDCIQTVPIKXAVLVFSGQKSTQVEEPDPQVDLVLGSSGPALVGEVFLVPVTLVSKGHDVYSGELKINLVDVKGGGLFSPRDSPYSMESHHVQLLGISGPEGEDDSHLDSDNIKKIQQSFGLISVPFIKNGDSWSCRLEIKWHRPKPIMLYVSLGYTPNNNESNAQMVHVHQNLQIEGNTAIVINHNYLMPFRRDPLLLAKNKQTSESDQNKQVSESDQKKQASESDQPESLPSNQKSVLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDP5</accession>
    <name>A0A392NDP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UPF0481 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018171</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034288">
        <property type="protein sequence ID" value="MCH97178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004158">
        <property type="entry name" value="DUF247_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31170:SF23">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31170">
        <property type="entry name" value="BNAC04G53230D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03140">
        <property type="entry name" value="DUF247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="267" mass="31064" checksum="19CCBE9AF5A5EAF4" modified="2018-12-05" version="1" fragment="single">LPFFVLENIFNLAFTSSTHASANPTKIPSFLELTFHYFKDYNRSNLATSDNITIRHFTDLIRIFHLQHPLETRRHRDNKPAKYFPSVTEMLEAGVRIKVNTSKCLLDLRFSEGVLEIPQLEVEDSTEILFRNMIAFEQCYYLFESYITDYVTVLDFLINTNKDVDILVQNRVLVNWLGNSDSVTNLFNSLAKNVIHYRFSSDYSVLCKELNDFCSHRWHKWKATLRQDYCNSPWQTAASIAGILLLILSLLQSICSVLQVVQQFNES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE91</accession>
    <name>A0A392NE91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleolin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036828">
        <property type="protein sequence ID" value="MCH98140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="28713" checksum="C680AD2BF5C236BC" modified="2018-12-05" version="1" fragment="single">GRQPFNNRGNFNRGRGFYHHGERSQIGRMGLRDDPDFSMHPDFHQWQFGPRGAMRGGYYAGSRGGAPFVGPSRHYHDRAWYGIPDGGPGGPLPPRRPYSSGGQFYGIPDGGPGEPFPPRRPYSPGGQFYGIPDGGPGEPIPPRRPXXXGGQFDMPFMGRHVDDPYLYDDNMRGIKRPLYMTDPEPDYMGPNRLRPRFDYADPSMFHGTRYHGLNFTPLFFPTYLLYGCILDNTLICRLCWGWQQTVPTGLLWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF90</accession>
    <name>A0A392NF90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036123">
        <property type="protein sequence ID" value="MCH97869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7642" checksum="7201494F366577BA" modified="2018-12-05" version="1" fragment="single">EEFDEEVQKELRVVKQLWADMAEQEKPFMPFVSRSRKKKDKQKVRNAVQPYHTRSKGPPSHMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGT3</accession>
    <name>A0A392NGT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transcription factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037562">
        <property type="protein sequence ID" value="MCH98429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038909">
        <property type="entry name" value="Effector_transcript"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35133">
        <property type="entry name" value="PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35133:SF1">
        <property type="entry name" value="PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19239">
        <property type="entry name" value="GIY_YIG_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15286" checksum="72B92A891679A84A" modified="2018-12-05" version="1" fragment="single">MWLPSFGLVADVINCFQILIGPSDWEDHSKGKEGSTRYRIHNLPQKLGPGVYELGVAVSYSGLGREIYKLTTDPRRVVVVYLGKAXNVRARLQRYGRTGAHLSNSCSTDDSSLQKGRSLFQEIFLQGFPIVYRWAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH81</accession>
    <name>A0A392NH81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Threonylcarbamoyladenosine tRNA methylthiotransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039728">
        <property type="protein sequence ID" value="MCH99227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035598">
        <property type="term" value="F:tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11918">
        <property type="entry name" value="RADICAL SAM PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11918:SF45">
        <property type="entry name" value="THREONYLCARBAMOYLADENOSINE TRNA METHYLTHIOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7989" checksum="0857C89248583B02" modified="2018-12-05" version="1" fragment="single">MKKVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDIASDGVHLNLQHFSVGRYLLPYHSRGLKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NID7</accession>
    <name>A0A392NID7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein GDAP2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019874</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038725">
        <property type="protein sequence ID" value="MCH98865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NID7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2616" checksum="A46C8B514C00AEB4" modified="2018-12-05" version="1" fragment="single">VLDEAHSSPGLHAAAGPGLAEECATLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL81</accession>
    <name>A0A392NL81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Metal transporter Nramp2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0021611</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NRAMP (TC 2.A.55) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043674">
        <property type="protein sequence ID" value="MCI00591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015086">
        <property type="term" value="F:cadmium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034755">
        <property type="term" value="P:iron ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001046">
        <property type="entry name" value="NRAMP_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF037982">
        <property type="entry name" value="Nramp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706:SF79">
        <property type="entry name" value="METAL TRANSPORTER NRAMP3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706">
        <property type="entry name" value="SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01566">
        <property type="entry name" value="Nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00447">
        <property type="entry name" value="NATRESASSCMP"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="172"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="208"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI00591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26266" checksum="3A2DFE84E7FB9DCA" modified="2018-12-05" version="1" fragment="single">EENRLLQSEECETIPLSTPLSTLSTTLDDGNREDYVYAAKDKVRIFDLESNGNSTGSTVVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLFIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIALKILSHGVLPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAIFIGTMGFSFAWMFFDTKPSEEELLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLJ1</accession>
    <name>A0A392NLJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041839">
        <property type="protein sequence ID" value="MCH99965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8618" checksum="148247CF6B0B9179" modified="2018-12-05" version="1">MTSREVRFVNLNLEEAEVAREKKVGSTTDSERGSKMVCXGEELFGNEGERLQTALLLFVIVIDVEFEDRFPTVIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM78</accession>
    <name>A0A392NM78_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044771">
        <property type="protein sequence ID" value="MCI00951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="1">
        <location>
            <begin position="76"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="270" mass="31163" checksum="162645EA91FC4041" modified="2018-12-05" version="1" fragment="single">ESSEKYKLVDTITDPELDWVGQEPRGIASVITPTAGGKFLTVEDGPGKNWDLYYPVEGKRVCSAYSEDGFAMYEFAFKELGFRLPFSEFALGVFDWLRLSPSQLHPNSLAFIRDFEIVCEYLEVDATIPLFFRVFKLQRHPVKNEQHGWVSLKQSTKIFRMFVDSVRGFKERYYIVKPITPVAVDSLYRNKHFDQPTDYYLTKDEALSEPELVGLEKLKKYVGSFKPICYVYASGELILNNRGKPRVKQRFINTKSLLECECKAECKALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NN22</accession>
    <name>A0A392NN22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transducin beta-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043363">
        <property type="protein sequence ID" value="MCI00486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NN22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11994" checksum="7AB0A312E3E2C255" modified="2018-12-05" version="1">MSVIEPDTQQTESKDEFPLRPEIDAPDQENGIEEKDHTIENKSASKKRKSNKSSLENEIEEKDQTLENDNDTASKKRKSKKSKHGSHKKVKDVAYNKVESIQLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NN33</accession>
    <name>A0A392NN33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021515</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043395">
        <property type="protein sequence ID" value="MCI00496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NN33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017222397" evidence="1">
        <location>
            <begin position="16"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="82"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="24261" checksum="ABF16FB74C2BC7AE" modified="2018-12-05" version="1" fragment="single">LPSTWSSFLLDLARASFIHVLHTIWMGRNVPRCWMVATSETELLIISRFRVQLKIMRAPRCRLVLWKTPPIWWHKVNMGGSVVNNIAACGGIFRDHLGNHVGSFSQNLGMVSVLHAELMAIILALELAATHAWMNIWVESDSITALGAFDNCFSRGLTIVHSHIFREGNTCANRFANHCHEVENSEWWDTLPLFLRDQFLYDKMGLPCYRID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNS5</accession>
    <name>A0A392NNS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021152</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042328">
        <property type="protein sequence ID" value="MCI00135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10091" checksum="D19049B4ACD132EC" modified="2018-12-05" version="1">MKGVVVLSDISESSSSGENLQAVGKVAKRRTAKKASHTVGRSTVQQVGLPVYRKLALTLKTAGRRRKVANMAKGGSKERHPAGRSCSGSQHVVHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPR3</accession>
    <name>A0A392NPR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Serine/threonine-protein kinase 38-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0022860</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047278">
        <property type="protein sequence ID" value="MCI01831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000102">
        <property type="entry name" value="Non-specific serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050839">
        <property type="entry name" value="Rho-assoc_Ser/Thr_Kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22988:SF76">
        <property type="entry name" value="CHROMOSOME UNDETERMINED SCAFFOLD_135, WHOLE GENOME SHOTGUN SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22988">
        <property type="entry name" value="MYOTONIC DYSTROPHY S/T KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="5">
        <location>
            <begin position="43"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI01831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16641" checksum="CAB4679764522077" modified="2018-12-05" version="1" fragment="single">MLEKKLADAEVSEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQU1</accession>
    <name>A0A392NQU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Respiratory burst oxidase protein H-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047041">
        <property type="protein sequence ID" value="MCI01772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016174">
        <property type="term" value="F:NAD(P)H oxidase H2O2-forming activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="entry name" value="Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013121">
        <property type="entry name" value="Fe_red_NAD-bd_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050369">
        <property type="entry name" value="RBOH/FRE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972">
        <property type="entry name" value="NADPH OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11972:SF54">
        <property type="entry name" value="RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN J-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08030">
        <property type="entry name" value="NAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferric reductase NAD binding" evidence="2">
        <location>
            <begin position="34"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15837" checksum="4D7B0AAECAF1CDFC" modified="2018-12-05" version="1" fragment="single">MLCVNVVSDVHVYVTMSTSYRKDSFSTNPSNEDRNGPERAYFYWVTREQASFEWFKGVMDDIAEYDSDGVIEMHNYLTSVYEEGDARSALIAMIQKLQHAKNGVDVVSESRIRTHFARPNWKKVFSQLADTHQSSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTB7</accession>
    <name>A0A392NTB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">1-phosphatidylinositol-3-phosphate 5-kinase fab1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023716</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049859">
        <property type="protein sequence ID" value="MCI02682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000285">
        <property type="term" value="F:1-phosphatidylinositol-3-phosphate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.7.10:FF:000007">
        <property type="entry name" value="1-phosphatidylinositol 3-phosphate 5-kinase isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45748">
        <property type="entry name" value="1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45748:SF14">
        <property type="entry name" value="1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="GroEL apical domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="27197" checksum="C1BDAF9D968340DC" modified="2018-12-05" version="1" fragment="single">MSSQYKKPRLLLLGGALEYQKVPNQLASFDTLLQQENDHLKMIISRIETLRPNVLLVEKTVASQAQEYLLAKEISLVLNVKRPLLERIARCTGALITPSVDSLSKARLGHCELFRLDRILEDHEAGNQFNKKPSKTLMFFEGCPRRLGCTVLLKGTCREELKTIKAVVQYAVFAAYHLSLETSFLADEGATLPKMIVKHLTDMPDSATADTDISIVSDTFSSTMCQSEADDASRAKDSVGHDIGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVI7</accession>
    <name>A0A392NVI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Wall associated kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024872</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053406">
        <property type="protein sequence ID" value="MCI03831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14799" checksum="A507E2780C32A652" modified="2018-12-05" version="1">MCNHTLHVNPPTDMHNYTKCPHYDLYYQPHVYADNASRTALTACANVRLPIKDFADSDNPFTFVTSDIVTEVYITEECAHCHYNRRGQCQLDSNGSYSCKEKRTDSECQIEYRSHGGCWSCSADVVGLLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVP3</accession>
    <name>A0A392NVP3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053588">
        <property type="protein sequence ID" value="MCI03887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="61" mass="7297" checksum="25F59C4291D69BC1" modified="2018-12-05" version="1" fragment="single">YEIKEYVEPLEIIQVQTLVEKCKKVEQMKRERMNRGAARGTFRPQGHQDQNNRDSQQCPYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLJ1</accession>
    <name>A0A392PLJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0033424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083726">
        <property type="protein sequence ID" value="MCI12320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7675" checksum="B0F879DC791BF35C" modified="2018-12-05" version="1" fragment="single">AVFRNRARFYGSSGSGRFIPVSAVFLPVLRTNGFYGLPGPDWVPVSGSTGSTGRSGPVFKTLLCPDSPMDCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4E8</accession>
    <name>A0A392Q4E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Preprotein translocase subunit SECE1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0039947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111844">
        <property type="protein sequence ID" value="MCI18792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1030">
        <property type="entry name" value="Preprotein translocase secy subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055330">
        <property type="entry name" value="SECE1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038379">
        <property type="entry name" value="SecE_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37240">
        <property type="entry name" value="PREPROTEIN TRANSLOCASE SUBUNIT SECE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37240:SF1">
        <property type="entry name" value="PREPROTEIN TRANSLOCASE SUBUNIT SECE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18558" checksum="FD706D3D7F8C1129" modified="2018-12-05" version="1">MVLLQPNTNTTFTLTFSPHLPSSHSLPLPQFFNFKLKPSPLSLTLTRRHRRPILPFAVEEKNQPSSIPEPESEPEQPEPEPIESDLASELKKAMQERKEKEGDSFWNGVVQEIGEIEWPEFGKVLGTTGVVLSVIFGSSVVLLTVNAILAEVSDKVFAGKGVQDFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT32</accession>
    <name>A0A392UT32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100248</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963278">
        <property type="protein sequence ID" value="MCI78977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7212" checksum="50316CF2D0AD99B2" modified="2018-12-05" version="1" fragment="single">PVATSSKFDGFSSSIRARVSVSGSRTYNPSLLSHFQAATSTGQGWLSRLGVPEAEGQTVQDVCGFCSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTH6</accession>
    <name>A0A392UTH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952760">
        <property type="protein sequence ID" value="MCI78533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7799" checksum="744568FF02555CDC" modified="2018-12-05" version="1" fragment="single">AITEHAFEVRQSSPRRRLREPPLKGGNVVVSRLQGRSHHLTETLHLDGADQDGKGGGTAAIYCEGEKHKKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUM2</accession>
    <name>A0A392UUM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100174</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010961612">
        <property type="protein sequence ID" value="MCI78903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4709" checksum="1E2D4989943F221D" modified="2018-12-05" version="1" fragment="single">KPRSLAELLAKSQTYIQYEEREMADAIRHSRPDDNPPPRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV79</accession>
    <name>A0A392UV79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010961465">
        <property type="protein sequence ID" value="MCI78899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017359329" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4520" checksum="37180A8C83166E73" modified="2018-12-05" version="1" fragment="single">GSAIVFLLVQAAAVVARLRCCLPLPIRPKGPPFGYQLVLHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWD6</accession>
    <name>A0A392UWD6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA/RNA polymerase superfamily protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964391">
        <property type="protein sequence ID" value="MCI79025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="63" mass="7420" checksum="B6F20A70417F3CBC" modified="2018-12-05" version="1" fragment="single">MLELTNPFLEEVKECQKRDKKLMEKLALIDEGKGIDFAVDENRVIRYRGRVCVPDVPELRKMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXM5</accession>
    <name>A0A392UXM5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0101878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999464">
        <property type="protein sequence ID" value="MCI80607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="49" mass="5448" checksum="E0469B23B7123964" modified="2018-12-05" version="1" fragment="single">MRLNPAKCSFDVQADKFLGFLLTHRGIAANPEKCQAIIDMRSPTSVKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY88</accession>
    <name>A0A392UY88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010966558">
        <property type="protein sequence ID" value="MCI79120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5279" checksum="17C3EE80D423C8E6" modified="2018-12-05" version="1" fragment="single">MLVKKLMTPTMDKETPHDILIIDKYNEPSYVKRLKLKMMTAVANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYC7</accession>
    <name>A0A392UYC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967475">
        <property type="protein sequence ID" value="MCI79160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32011">
        <property type="entry name" value="OS08G0472400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32011:SF2">
        <property type="entry name" value="OS08G0472400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5563" checksum="AD081918865AE0FF" modified="2018-12-05" version="1" fragment="single">MVQVSASGFFEGEMVVLDNQALLDALLLKTDKFSDSLRKAGWSSEEVSEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWT8</accession>
    <name>A0A392LWT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000157</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000094">
        <property type="protein sequence ID" value="MCH79408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="31"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="4">
        <location>
            <begin position="1223"/>
            <end position="1501"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="569"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="573"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="630"/>
            <end position="639"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH79408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1971" mass="222905" checksum="594CFA43DB7C3AFF" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWU2</accession>
    <name>A0A392LWU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication protein A1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000110">
        <property type="protein sequence ID" value="MCH79437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="450" mass="51247" checksum="01B6DE432BBC3F0A" modified="2018-12-05" version="1">MSIIKDSFSANSSPKVNPTRVGHDNHQNPSTLHPSHVDHGNYQNPSPFNASMANHQVDDHVNTLPAKYSHTDDPVRVDHGSLHNPSTVDASKATNRVDDPVNTCVHDFLALLQTYQMEFDSQSHVGRLPSCFTRELGDTISDLHDLYDVDFGAWIALTYGNPKLLTMRILTRWGVEYLPWYGFGLSAFAFIFSDVILVDNAGYQYRCALNFGVDAAGELSCNVSGGWSRLLARHGVVEGDRVKFSIDHYSASNVIVANRVHQLLKEPVDWNLAHRRVDYLDMVKVMYRTFQVECPRFEVVAKLPIMFTKEFASEMYRYNRVVDRYGNDFEDRYYRDLLVKHLYPSLRLNLSRTLFGSDKNPSWFDDVPLPYCHEPQNFAHNFIVILTGDDVHSGLLVINYGIFASKHFAKDAKCMALIDESGLEWTCTVKFSSHPFIIWKLVETGGPWLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXC4</accession>
    <name>A0A392LXC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0000051</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000029">
        <property type="protein sequence ID" value="MCH79304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="17">
        <location>
            <begin position="242"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="18">
        <location>
            <begin position="761"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="17">
        <location>
            <begin position="1741"/>
            <end position="1920"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="18">
        <location>
            <begin position="2260"/>
            <end position="2424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1124"/>
            <end position="1149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1190"/>
            <end position="1216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1384"/>
            <end position="1427"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="16">
        <location>
            <begin position="1193"/>
            <end position="1212"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="16">
        <location>
            <begin position="1384"/>
            <end position="1396"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="16">
        <location>
            <begin position="1397"/>
            <end position="1421"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH79304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="2652" mass="299592" checksum="8ED6C86401ADB8C3" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY62</accession>
    <name>A0A392LY62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000583</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000396">
        <property type="protein sequence ID" value="MCH79825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="133"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="267"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="694" mass="79874" checksum="3C0345413C1A118B" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZF4</accession>
    <name>A0A392LZF4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001158</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001006">
        <property type="protein sequence ID" value="MCH80390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="111"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="464"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="487"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="498" mass="57574" checksum="2A99826CD829BDE3" modified="2018-12-05" version="1">MKNLSKTSKKGNGEGVSTSNRVNPPRGAKKRRGAVLRELTPTPSPPPSPPRAPTPPPPQPIHVEIPRDRFVSEAAFTRYREIGNKTFNHERKLATEVIELPLVKRNFIRKRWYSLNTMVEFGNRTRAMEFLCNAWRTRFEKKRPXXXXXXXXXXXXXXXAINEAFNFFVPEVCDLIIKRHSRKGIPEHKAEELKAQLSVPDTEWVKESKSFVATRFKTAGLLDIPRIWAEFWIHNVEPSGNSSETSLELAFAIQTILEGGGGINLGSILSDHLDTMIQKTGVFNLGHLCLINFLCDKYVVPRFNDDEFERPTTEVKMSFVREIRRKTGGREFVPFDEDDFMDYENDVDEARRQEMDNDLQNVINQEVPHVNAPAMENFPAPQFDEDKLAKMVWRMDMSTLQGVDMEDSFNTSGDLWQAAMAYRETHPPIFFPRYQTEEDFDAAHQRRIAKMNAQHEVNRVTFRYQRDRAGPSQARTSSDQFPSYLPRFHDDHNRPDEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZS1</accession>
    <name>A0A392LZS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Swarming motility protein ybiA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001116">
        <property type="protein sequence ID" value="MCH80491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="359" mass="40140" checksum="064F76AF67BBFE56" modified="2018-12-05" version="1" fragment="single">MEILVFNGHYDAYFWVICVDKYCKVRGISESEKMALAATGMSGCALKWWRWWSPRHPGVSWNMFTIALLWRFKPEDRAILPIVDEEEEPYQEISPFMELNGCSHELMNDTLQAWDTFLLSTDQIEVPPVQVTNLTLAATVPPTSDCDGGKSDLEDVATLMPTDTVNPTSEGIGEIPILPITATKTILTKPTGEIIHENAARDQVALDFVTLEQARMRTTFRMSLNPFLDEIKVVLMSVYDNLDVYITGIQHDSRFVPPAKIYNCNFENSKTNGITSTNCLTKSMYMMLHFKVDFCCFNSNRATHNSTPKGPDCKFSSLAANTLSSGMSQTKPLGGSLFSIGCTMASLSEEFARQCCSHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZW6</accession>
    <name>A0A392LZW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Vacuolar protein sorting-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001219">
        <property type="protein sequence ID" value="MCH80582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009543">
        <property type="entry name" value="VPS13_VAB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF143">
        <property type="entry name" value="PROTEIN SORTING-ASSOCIATED PROTEIN, PUTATIVE (DUF1162)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25036">
        <property type="entry name" value="VPS13_VAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vacuolar protein sorting-associated protein 13 VPS13 adaptor binding" evidence="1">
        <location>
            <begin position="174"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="659" mass="73392" checksum="2C0226F3AF83D5A0" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1Y8</accession>
    <name>A0A392M1Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002105">
        <property type="protein sequence ID" value="MCH81285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="385" mass="44028" checksum="46AADE4E5E399479" modified="2018-12-05" version="1">MVRSREGETSGGARSNSVGPKNDKTAQSDRRRNGPRDRGFTHLSYQEMMDRKQKGLCFKCGGPFHPMHQCPDKHLKILVLEDEEDEDKEARVIAVEMEESDEEKTGDMCVLTLNHIAYENHKTVKFQGQFCGVPVLILVDSGATHNFVSQKLVQKMGWSVEETPLMSIKLGDGSRAQSRGVVKGLEMAIGEFKLTPEMHLFELGGIDVVLGMDWLKTLGDMIVNWRQQTMSFWSNKKWKELWGIEKKGVEEKSELTSSQQRQLEEILRRYDQVFQEPTGLSPRRNKEHAINLVDNYGAVNMRPYRYPHHHKNEIEKQVKELLAAGVIRHSTSSFSSPVILVKKKDNTWRMCIDYRALNKVTIPDKFPIPVIEELLDELHGAXPCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M336</accession>
    <name>A0A392M336_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002456</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002611">
        <property type="protein sequence ID" value="MCH81665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M336"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4238" checksum="0F7C72C513C51B16" modified="2018-12-05" version="1">MLPEVERDGDAEKVDEEDEFDVMIDDRTVAVSPAVIVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4V7</accession>
    <name>A0A392M4V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Agenet domain-containing protein/bromo-adjacent domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003672">
        <property type="protein sequence ID" value="MCH82422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8713" checksum="C54178D25AD38888" modified="2018-12-05" version="1" fragment="single">MFEHKEMGELLDDSGKAVGYMYTDGINANNKKIPDKLISRNLKFQSSDIDWSGTAWFCAKQLKHYSGFDRKGTTIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5D5</accession>
    <name>A0A392M5D5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003354</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003835">
        <property type="protein sequence ID" value="MCH82545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="280" mass="32157" checksum="074C9FFC6B86E57F" modified="2018-12-05" version="1" fragment="single">MGQSXXXXXXXXXXXXXXPESIDDYLNRFRLLKARCFTQVPEHELVEMAAGGLDYSIRKKLDTQYLRDMAQLADRVRQVERLKTEKARSSKFHRKEKEKVAYVETSINDDEYDINYEDVEDNEVNVAELKSGPPYTWTVQKALNEGRLKFDEKAKPQMKVDSDPLQVAEASYVEPFECLVMEAMEVTQILAVPEEEYTEKIKVLYPQAEEELVDFLNRCKLNNKEVMLCPRCSVEQQAIFEKPDEGMKNHLKPLFIKAKVNNVGVNKVLIDGGAAVNLMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5S2</accession>
    <name>A0A392M5S2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/FBD/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004034">
        <property type="protein sequence ID" value="MCH82686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF32">
        <property type="entry name" value="F-BOX_RNI_FBD-LIKE DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="25"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="40196" checksum="A71092A1F6F32786" modified="2018-12-05" version="1" fragment="single">MAAESSSRRLRSEEENDGIDRISXLXDSLRFHILSFLPTKTSVRMSLVSRRWRNFWKNLQVFDFGDNSSYMLNGYTEDNEEQFMPFTVFVNTVLALRRSRVVRKFSLDCHHSQLDKFSTHSIDTWISIAIGPHLEELHLTLLTADYSEIRLPSLKVLKLLDMYDLDLNSVNILVSGCPILENLELSFSPESLATLRMPSSLKRLKIEVWNLVGACLEIDAPGLKYLSLTNITFRNAAAVGNLHNVEEAYLEVFSTPDNESVEPLFSLLRALSGIKHLELHSTTTKWLCSAPVLEFPEFCHLLYLELWLLSFNSSFVIDMLQKCPVLQTLKTWYGSSSSCGWEAKPKNVPKCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M763</accession>
    <name>A0A392M763_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nuclear pore complex protein Nup205-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003758</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NUP186/NUP192/NUP205 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004423">
        <property type="protein sequence ID" value="MCH82945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M763"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021827">
        <property type="entry name" value="Nup186/Nup192/Nup205"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31344">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31344:SF0">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17192" checksum="337A6306C2B6135F" modified="2018-12-05" version="1" fragment="single">MYDIKEEDYEGVVDQSRLSTTKESSSLQTQLPVLELLKDFMSGKTVFRNIMSILLPGVNSIVAERSSQIHGQYLENAVQLSLEIIILVLEKDLLLSDYWRPLYQPLDIILSHDHNQIVALLDSRMVGLVQLLLKSNASNSLIEDYAACLEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M771</accession>
    <name>A0A392M771_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Octicosapeptide/phox/Bem1p domain kinase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004479">
        <property type="protein sequence ID" value="MCH82983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06410">
        <property type="entry name" value="PB1_UP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000058">
        <property type="entry name" value="Octicosapeptide/phox/Bem1p domain kinase superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053198">
        <property type="entry name" value="Gynoecium_Dev_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000270">
        <property type="entry name" value="PB1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31066:SF97">
        <property type="entry name" value="OS03G0401100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31066">
        <property type="entry name" value="OS05G0427100 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00564">
        <property type="entry name" value="PB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00666">
        <property type="entry name" value="PB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54277">
        <property type="entry name" value="CAD &amp; PB1 domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PB1" evidence="1">
        <location>
            <begin position="165"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="39130" checksum="C6EC088A66F11736" modified="2018-12-05" version="1" fragment="single">MEPRNEYQPGLPSVMHDHMDDIYTSRRPHDLNTEEVKPVQHYSIQTGEEFALEFMRDRANLGKPVFANVGDPNYATGYMELKGILGISHTGSETGSDISMLSMMEKYPKEFDRSQYGSIRSIPRSSLNQDNRQFVHGYSSSESYDNSSIMMKFLCSFXXXXXXXXXDGKLRYVGGQTRILRIRKDISYHELIQKALVIYNQVHTIKYQLPGEDLDALVSVSSDEDIQNMMEEYNNQEDREGSQKLRMFLFSIRDLEDAQFGLXXXXXXXEIQYVIAVNGMDLESRKNSTMVGFSYSANDINELDRQNIDGANDNAPLTHNFDSSLGTHFSQPVLPTSSNSYEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7E4</accession>
    <name>A0A392M7E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc transport protein ZntB-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004165</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005029">
        <property type="protein sequence ID" value="MCH83346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.340">
        <property type="entry name" value="Magnesium transport protein CorA, transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46950">
        <property type="entry name" value="MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46950:SF2">
        <property type="entry name" value="MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="Magnesium transport protein CorA, transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17397" checksum="A49207A415DA346C" modified="2018-12-05" version="1">MIEEQEAVRVRLFTIQDVMQSTVRAWLQDKSLKVTHNLAIFGGVGLVFSMVTGLFGINVDGIPGVKNAPYAFGVFTSILISVGVVLIVVCQIYLGLKNPVAEEQVEVRRLELQEMVKMFQYDAETIARVRKNVSRNNLPPPAGDAFRKDADYLIIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7U9</accession>
    <name>A0A392M7U9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor bHLH25-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0004376</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005379">
        <property type="protein sequence ID" value="MCH83550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7U9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11452">
        <property type="entry name" value="bHLH_AtNAI1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052610">
        <property type="entry name" value="bHLH_transcription_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45959">
        <property type="entry name" value="BHLH TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45959:SF70">
        <property type="entry name" value="SYMBIOTIC AMMONIUM TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00353">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BHLH" evidence="6">
        <location>
            <begin position="131"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="170"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH83550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="32577" checksum="89C8ABD57DA83D15" modified="2018-12-05" version="1" fragment="single">MENISFIRGFPDQEIMEDPSFCLHQWHLNSIDESNSLPIASAFGDTLQHHSYIYPNFNHRTSVETAPKLDTQFVSYPNLVSFVDLNHVNQFGLMKPKDEMVCPQNNRTSPSDMIPQGTFEAKKLATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLKKLQEKVRDLEEEQNMKKNVETVVVVKKSQLRNDVENSSAESGGPFDEELPEIEARFCDRNVLIRIHCEKSNGVVEKTIHEIEKLHLKVTNSSVMTFGNCALDITIMAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8B9</accession>
    <name>A0A392M8B9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004223</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005138">
        <property type="protein sequence ID" value="MCH83403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8B9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF77">
        <property type="entry name" value="DNASE I-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="31621" checksum="D6CD3DD5144A8140" modified="2018-12-05" version="1" fragment="single">MREPWMLAGDFNDIAWENEKRGGAPISSRKCARFRDRMDACRLMDLGAMGPKFTWRGPLYHGGQRIYERLDRALSNDRWRLVYPDGFVKVLPRLEFSDHHPLLIVPIGEAHPRIPRQFKFESAWLLDESYSDMLREHWNDDALVSDNLSEIKSNVHQWKTNTFDKILIKKKRIMARLDGIQRALHNGNRNKGLWALEIKLNKELSETLQKEELMWFQRSRAKWLMDGDRNTRYYHLKTVNRRRRNNIVMLKDVNGSWVEDSETLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Q8</accession>
    <name>A0A392M8Q8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005885">
        <property type="protein sequence ID" value="MCH83872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8Q8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14590" checksum="4D6229BFE37BECD6" modified="2018-12-05" version="1" fragment="single">GTTAVTLIKQGPDLVVGNVGDSRAVLGTRDHDDSLIAVQLTIDLKPNLPKEEERIKLRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKDVGLISVPDVSYRRLTEKDEFVVLATDGVRHMISYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M968</accession>
    <name>A0A392M968_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006163">
        <property type="protein sequence ID" value="MCH84037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M968"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="22354" checksum="02ECEB880F7BA68F" modified="2018-12-05" version="1" fragment="single">KGVGTECKAHVHGPTKKSLSTKNMKKSLKTDGSSKPHIGNRKINPFLPFNKLSLLPGQSQPVNRRKKSSKSRGEKQDNVDVAGDVESDSLHNSDFSSSVQDGGINVMLGIDLEVVLPSFPEQEEGPVPVGGRENSGLELLLQSGSGDGVPDRRVEEAEKLIKLAEDVGLKFQGGEGEDLARMVSMEGRDCEEKEGREMRRENSGFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBH4</accession>
    <name>A0A392MBH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004420</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005449">
        <property type="protein sequence ID" value="MCH83594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932">
        <property type="entry name" value="ATPASE EXPRESSION PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932:SF2">
        <property type="entry name" value="OS10G0484300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81901">
        <property type="entry name" value="HCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="12"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="76"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="111"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="146"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="181"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="216"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="251"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="286"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="321"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="356"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="391"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="424" mass="48081" checksum="69535DB4CC149CC5" modified="2018-12-05" version="1">MGYKPDTITLNTLVKGMCLKGEVRKALNFHDKVVADGFHLDQFSYGILMNGLCKTGEISAAMQLLRRIEGKLVRPDVVMYSTIIDSLCKDKRVIDAYDLYSEMIGKGIFPNDVTYNALIYGYCMVGQFKEAIGMIDEMVLKSIKPNIYTFSILIDALCKEGKMKEAKNVLAVMVKQRVEIDVVTYTSLMDGYVLVNEVNKAKVIFNTMAQRGVMPNVYCYSVMINGLCKIKMIDEAMNLFKEMQSKNIIPSTITYSTLIDGLCKSGRISRAWKLLDEMHDRGQPANVITYNSLMQALCKNHHVDKVIALVKKIKDQGIQPDMYTYNMLIDGLCKEGRLKDAQVMFQDLLIKGYNVTVWTYNIMINGLCLEGLFDEAFALLQKMEDNGCIPDVVTYQTIIYTLFENNENDHAEKLLREMIARGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBV7</accession>
    <name>A0A392MBV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007333">
        <property type="protein sequence ID" value="MCH84761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="14808" checksum="6FD418DAC30BF259" modified="2018-12-05" version="1">MKACVCQGNLSVLVKGCPTEQINISRGLKQGDPLAWFLFLLVVEGLTMLSNNPVSLGFFKGFQVSSDVSVSLLQCADDTLFIGDACVENLWSMKAILRCGRSIFSTLQVGITSFHLLRAPGGVKPVTTFDLGSGGEDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCW8</accession>
    <name>A0A392MCW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0004945</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006285">
        <property type="protein sequence ID" value="MCH84114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF21">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="4">
        <location>
            <begin position="419"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="110"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="16"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="576" mass="65759" checksum="6B5FC93A50D29ABD" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDA2</accession>
    <name>A0A392MDA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005975</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007960">
        <property type="protein sequence ID" value="MCH85133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000288">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein At4g02750"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF433">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="32"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="DYW" evidence="4">
        <location>
            <begin position="176"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="30945" checksum="B817FF55B8AE80A8" modified="2018-12-05" version="1" fragment="single">VGVLSACSHTGLTDRGTEYFYSMNKDYGITPNSKHYNCMIDLLGRAGRLEEAYNLMRNMPFEPDAATWGALLGASRIHGNTELGEKAAEMVFNMEPHNTGMYVLLSNLYAALGKWVDVGKLRLKMRQLGIQKIPGYSWVEVQNKIHTFTVGDCFHPEKDRIYAYLEELDLKLKREGHVSLVKLVLHDVEEEEKKQMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRPIPEEWALAFVHDFVNAADQWDFSRLMDFIPSWVLEEVXALAPSFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDD8</accession>
    <name>A0A392MDD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Paladin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006383</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008696">
        <property type="protein sequence ID" value="MCH85537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050561">
        <property type="entry name" value="PTP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23339">
        <property type="entry name" value="TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14566">
        <property type="entry name" value="PTPlike_phytase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01301">
        <property type="entry name" value="PTPlike_phytase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="354" mass="40040" checksum="FC7A3C0FFBF20689" modified="2018-12-05" version="1">MEARLKEDILREAEQYDNAIMVIHETDDGQIYDAWEQVTSNVIQTPLEVFKSLEADGYPIKYARVPITDGKAPKSSDFDTMAFNIASATKNTAFVFNCQMGRGRTTTGTVIACLVKLRIDYGRPIKILGDNVTQEEVDGGSSDGDEVGSYITAPNNLQIKTNEKQKHIFGINDILLLWKITAFFDNGVECREALDGIIDRCSALQNIRQAVLEYRKVFNQQHVEPRVRRVALNRGAEYLERYFRLIAFAAYLGSEAFDGFCGEGESKVSFKNWLHQRPEVQAMKWSIRLRPGRFFTVPEELRAPQESQHGDAVMEAFVKGRSGSVLGKGSILKMYFFPEGKATHPMETYMIIHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDG8</accession>
    <name>A0A392MDG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005941</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007900">
        <property type="protein sequence ID" value="MCH85099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="315"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="361" mass="39484" checksum="9E37373B1FCBFA14" modified="2018-12-05" version="1">MKVRVMDHTDHAPFVIFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQIARLVDKTWLFKVETKPSTNPRFEQTFRVRKICTDHAIITLFKDKWDKEEAAISKINNEVGSLSTLLEKGKDVLVCSSTNILSEDLQSLTGSSSKDKGKEIVCDSTHVALTQDLMNKFSSTVVNLDDDSVDTFDCIKNPKIQKSLISSKDLHESTASAVKGKAKEIDVEGTHVEETYELVGKRGTSVGNIGGDSVHSEKSVITLNQVSAIEENGSKNNKDLHALAEIRAKGNTKDMVLEGTPVGHIQQFETNSNSGLESASKVVIAPKQNASNEIKGAKSNKPAKRVSPQKEDEDDNAPIKLLKRAVKIEKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDI0</accession>
    <name>A0A392MDI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Trafficking protein particle complex subunit 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007913">
        <property type="protein sequence ID" value="MCH85109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990072">
        <property type="term" value="C:TRAPPIII protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024420">
        <property type="entry name" value="TRAPP_III_complex_Trs85"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12975:SF6">
        <property type="entry name" value="TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12975">
        <property type="entry name" value="TRANSPORT PROTEIN TRAPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="18119" checksum="B6976BF950C515A9" modified="2018-12-05" version="1" fragment="single">NLKMKISHPRFLIVGNQENVKLEFPGCLTKKSDSVQSGAHANPNMMAAVPGDISLYMSIYYEIEDISSVIRYRTLRLHYNVQVLPSLDVSFQISPSRLRIQDFLVRLDIVNKTSSESFQVYQLSSIGHHWEISLLQPPDAIFPSQTLMAGQAISCFFTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDJ1</accession>
    <name>A0A392MDJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008764">
        <property type="protein sequence ID" value="MCH85572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16317" checksum="559396882292DB80" modified="2018-12-05" version="1">MSLSHLLKSANRRLGLSILQNHGRISSSASYRASQVPNRKIDIIENKGSSSSWLRSLLFGRPYNQQQSCSDDALYQNMGNEYILKLRYINYTTKLIIKAARPNLMETILTKVLLAFQAEYLFNIEDAKFYAEYLFNTPLSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEM4</accession>
    <name>A0A392MEM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phospholipase D beta 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006402</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008736">
        <property type="protein sequence ID" value="MCH85555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004630">
        <property type="term" value="F:phospholipase D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024632">
        <property type="entry name" value="PLipase_D_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015679">
        <property type="entry name" value="PLipase_D_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896:SF124">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12357">
        <property type="entry name" value="PLD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Phospholipase D C-terminal" evidence="3">
        <location>
            <begin position="17"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10989" checksum="CC7EE8AEA17AB8CD" modified="2018-12-05" version="1" fragment="single">VHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMSEMNWKQFASNDVTEMGGHLLKYPVEVSRKGKVKPLPGHEEFPDVGGKIVGSFIAIQENLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF10</accession>
    <name>A0A392MF10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008863">
        <property type="protein sequence ID" value="MCH85629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8895" checksum="221079221F01DFED" modified="2018-12-05" version="1">MRTVTGKPCISPLNFKVWGDNWPGQIIHQGQELTRGKLGLRVLGLLGSEVGVFGGYGLGNFGLVSRIFASTSFAKPMAWEML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFC3</accession>
    <name>A0A392MFC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009553">
        <property type="protein sequence ID" value="MCH86001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF562">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="73"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="21211" checksum="4AFBBB8A8C4BAD12" modified="2018-12-05" version="1" fragment="single">MVVLEKMKVWVLQKRQLISTIGFSDGGLGKVNRDDSQLVNDIVKDVRKMLSLSYPNELKNFIQKAENNIDIESLLREHKKIGIWGSGGMGKTTIAKYLFACYFAQYDSVCLLENVREDTEKNGVTHVRNKLLCELLRRPVTASEVVGLHTFIKRSLIGKKVLVVLDDVDNMHQLDNLCSYLDELGPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFX5</accession>
    <name>A0A392MFX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007264</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010268">
        <property type="protein sequence ID" value="MCH86407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10298" checksum="6492C548B948F20F" modified="2018-12-05" version="1">MAEHNPPPLPRRTMGEYCKRSDTYHVSLGFRPTNSVNFDIKSTVLACLRENQFNGRANKDPWDHLSRFSETCQIQKVPDYITEDQNLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHC3</accession>
    <name>A0A392MHC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide transporter PTR2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007352</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010403">
        <property type="protein sequence ID" value="MCH86495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF31">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="113"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="3">
        <location>
            <begin position="174"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="266"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="306" mass="34325" checksum="060EA7FBC92D0AEB" modified="2018-12-05" version="1" fragment="single">MFLLEASSSMTNARSKVNNIHMPSTSSSGAGFQGIYSVSCNFISDVVNTWIVDSGATDHACYSIHLFTSYKKENHIPRTIGSAKLAHGLYYLEGQLILGLLQVLFVIPSLSLAHLFGIFVLVMLLSLDLWGPYSTPTLHGHKYFLTIVDDFSRYTWIMLLKGKHEAASQIQSTDVNKTKLHPRATKCIFLGYKSWIKGYVVLNIGNYQTSISKNVLFEETVFPYITRKPIIQSWEYLDSTKPHSQKSTTFSPPPIDHILPLSNPQPSLDSPPFSDSNTTIPPPSSPPPKRKSTRLKLVLFIFWTII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI06</accession>
    <name>A0A392MI06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methylthioribulose-1-phosphate dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007683</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011008">
        <property type="protein sequence ID" value="MCH86823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046570">
        <property type="term" value="F:methylthioribulose 1-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="entry name" value="Class II aldolase/adducin N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10640:SF8">
        <property type="entry name" value="BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE_ENOLASE-PHOSPHATASE E1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10640">
        <property type="entry name" value="METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="AraD/HMP-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Class II aldolase/adducin N-terminal" evidence="1">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17305" checksum="4BA8F459EFAC33F7" modified="2018-12-05" version="1" fragment="single">IEDYPKTTAVLVRNHGIFVWGDSWISAKTQSECYHYLFDAAIKLHQVGLDWSTPNHGPILSARRGLSIAGESNLSTKARKDNGDIDPSPRCIVLDIEGTTTPISFVSEVLFPYARDNVGRHLSATYDTSETKADIKLLRSQVLNGSSPVMWNVIPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI27</accession>
    <name>A0A392MI27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Rho GDP-dissociation inhibitor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0008018</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Rho GDI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011631">
        <property type="protein sequence ID" value="MCH87152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005094">
        <property type="term" value="F:Rho GDP-dissociation inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007266">
        <property type="term" value="P:Rho protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.50.30:FF:000004">
        <property type="entry name" value="Rho GDP-dissociation inhibitor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.50.30">
        <property type="entry name" value="Coagulation Factor XIII, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000406">
        <property type="entry name" value="Rho_GDI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024792">
        <property type="entry name" value="RhoGDI_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10980">
        <property type="entry name" value="RHO GDP-DISSOCIATION INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10980:SF44">
        <property type="entry name" value="RHO PROTEIN GDP-DISSOCIATION INHIBITOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02115">
        <property type="entry name" value="Rho_GDI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00492">
        <property type="entry name" value="RHOGDI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="unsure residue" description="I or L" evidence="5">
        <location>
            <position position="3"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH87152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12435" checksum="05111B7BED976B76" modified="2018-12-05" version="1">MFLLKEGSQYRLKFSFIVSNNIVSGLKYTNVVWKTGIRVDSTKKMLGTYSPQQEPYTYELEEEITPSGLFARGTYSARTKFVDDDRKCYLDATYRFEIQKNWPTPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ54</accession>
    <name>A0A392MJ54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007128</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010052">
        <property type="protein sequence ID" value="MCH86274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9468" checksum="8C8BB40B747463AD" modified="2018-12-05" version="1">MKVHTKNDKGLNLELCDGEVKSESKNEAVVHAIARRGKRERWRKRLGKKKRRLKRLREERAVAKEVREEEASLKNEEFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJU2</accession>
    <name>A0A392MJU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008223</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012038">
        <property type="protein sequence ID" value="MCH87355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="72"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18566" checksum="C9B027A563297C13" modified="2018-12-05" version="1">MGSWVEDQWVWNLRFRRDLFVWELNLLGNLLEILNGSPISIAVNSWCWKHDSCGFFLVKSAYMVLRQSTADEDRLPTRHNLWKQGVITDVGASMCDLCGLGYESVDHLFGSCNQISPIWYVILMWLGVEWVSPRGILGCFEIFMGMDTFSAECLVDMVKLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKK7</accession>
    <name>A0A392MKK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013344">
        <property type="protein sequence ID" value="MCH88020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11206">
        <property type="entry name" value="MULTIDRUG RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="20647" checksum="F884928E33E5F137" modified="2018-12-05" version="1">MQVGNELGAGKPYKAKLAAMVALGCAFVMGFINVTWTVILRYGWAGLFTNDEPVKALVASVMPIMGLCELGNCPQTTGCGILRGTARPVIGANINLGSFYFVGTPVAVGLAFWFKIGFSGLWFGLLSAQVACALSILYVVIVRTDWEAEALKAEKLTRVEMGICNGSKNKDNKKDEECKGLLENGNGNKIDIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKN8</accession>
    <name>A0A392MKN8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008957</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013449">
        <property type="protein sequence ID" value="MCH88076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8318" checksum="24F21F6CA5051C76" modified="2018-12-05" version="1">MVAELWGAFEGLKLAWEKGYKLVELQMDAKDIDKVLNREASLKAEELSLCSDMITYESYPTHLTRYVLADIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLE3</accession>
    <name>A0A392MLE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013911">
        <property type="protein sequence ID" value="MCH88310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3188" checksum="1D622CF19974DE07" modified="2018-12-05" version="1" fragment="single">MGEDDKKEETKMISSTSTDQKEGGGGDVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLW4</accession>
    <name>A0A392MLW4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0009385</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010014273">
        <property type="protein sequence ID" value="MCH88496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024678">
        <property type="entry name" value="Kinase_OSR1/WNK_CCT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050588">
        <property type="entry name" value="WNK_Ser-Thr_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13902">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12202">
        <property type="entry name" value="OSR1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Serine/threonine-protein kinase OSR1/WNK CCT" evidence="10">
        <location>
            <begin position="110"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH88496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="386" mass="42560" checksum="1F32FDCE99EF71BE" modified="2018-12-05" version="1" fragment="single">LNKVSDPQIKEFIEKCLVPASERLSAEELLKDPFLQIDSQKDPFPSPVKTRRSTSRAGSMDMDADYKNFSXXXXXXXXXXXXXXTVYQVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTSGRVRNIHFLFYLDTDTAVSVASEMVEHLELADHDVAFIAELIDYLIMKLVPWWKPSPDHNSTGGTSLCSGSTNVDSQTACPWSSILTSVSSETVSGQDVFSGFNTIPKDGLETPGKACFYKNADNAIFKGALDSTPSLVNSEDRYSRGSGASEIAVDDVSMKNANCHDSKFLGVGYFKCLARSITGLEVGDAYFEDCKLQAADYNIGGSTVNSELSNAVSLSSSCCSMSSTEKDIDLELKNELEAIESQYQHWIEELTRMKLEALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMF8</accession>
    <name>A0A392MMF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0008344</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012265">
        <property type="protein sequence ID" value="MCH87474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051240">
        <property type="entry name" value="Mito_RNA-Proc/Resp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033443">
        <property type="entry name" value="PROP1-like_PPR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47933:SF12">
        <property type="entry name" value="OS11G0433600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47933">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17177">
        <property type="entry name" value="PPR_long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="76"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="111"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="146"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="PROP1-like PPR" evidence="4">
        <location>
            <begin position="195"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="216"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="355"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="unsure residue" description="I or L" evidence="5">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH87474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="382" mass="43772" checksum="8F0D03C936ADC53F" modified="2018-12-05" version="1" fragment="single">MSYHPSVIVYTIVLRLYGQVGKLNMAEEIFLEMLNAGCEPDEVACGTMLCSYARWGRHKSMLSFYSAVKERGLILSVXVFNFMLSSLQKKSLHKEVVHVWRDMVGKGVVPNDFTYTVVISSLVKEGLHEDAFKTFDEMKNNGFVPEESIYNSLINLNAKNGNRDEVQRLYEDMRFRRVAPSNYTCATLISLYYKYEDYPRVLSLFKEMARNKIPADEVIYGLLIRVYGKLGLYEDACKTFEKIKHQGLLTNEKTYLAMAQVHLTSGNVDKALEVIGLMKSKNIWFSRFAYIVLLQCYVTKENVVATEGTFLALCKTGLPDAGSCNDVLNLYVRLNLMDKANEFIVRIRDNGTHFDEELYRTVMKICCKEGMLLEAKHLTNQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN99</accession>
    <name>A0A392MN99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015211">
        <property type="protein sequence ID" value="MCH88977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11480" checksum="A90574F7D10C9AA9" modified="2018-12-05" version="1">MQRRYPTHLVTMMYNVTKTLSSIGSENGLNMYLNSRACDSIFTKGKNSTREGSREDREVAVLGSPKKGARAVTSNSLVWLLSMSNVPIQFSKAPPLGPTGRIQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNB3</accession>
    <name>A0A392MNB3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014977">
        <property type="protein sequence ID" value="MCH88851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF18">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="29"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="355" mass="40028" checksum="BA73EF3FDEC0B5C5" modified="2018-12-05" version="1" fragment="single">MQNTVSAYVKMCAVCQKAKHSTTLSSGLLNPLPVPSQVWEDVAMDFITGLPNSCGFTVILVVVDRLTKYGHFFPLKTDYDSKMVAEVFMKNIVKLHGIPKSIVSDRDKVFTSTFWQHLFKMQGTTLAMSSAYHPQSDGQTXALNKCLEMYLSVAMTPFKALYGRDPPTLTRSMTSLDSIDETVVSHVHNKEFVLTQLQQNLHKAQQFMKNQADKHRKHVSLEVGDLVLVKLQPYRQITVASRGNQKLSLKYFDPFKVIAKIGMVAYKLDLPPTARIHPVFHISQLKKFATDENPPYSTLPVTTTDIGPIMLPDKVLKARTVLKGPITVPQVLVQWQNLDASLAIWEDKKDMLHNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNN8</accession>
    <name>A0A392MNN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Blue copper protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010000</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015478">
        <property type="protein sequence ID" value="MCH89107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039391">
        <property type="entry name" value="Phytocyanin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003245">
        <property type="entry name" value="Phytocyanin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021">
        <property type="entry name" value="BLUE COPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021:SF350">
        <property type="entry name" value="UCLACYANIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02298">
        <property type="entry name" value="Cu_bind_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51485">
        <property type="entry name" value="PHYTOCYANIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Phytocyanin" evidence="3">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="93"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH89107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="14758" checksum="088AB334BD818E00" modified="2018-12-05" version="1" fragment="single">ADKFCCVEKSVFKYGSSHQVDEVSESDYKSCSSSNPIKNHNDGDSKVALTKAGKLYFICPTIGHCSGGMKLQVDVVAASTTPTPSGTPPPTKSPSDTPSTPSSGTNTTSPPPPKDSGAMSVSNGISLLVGSFFVSTMVLSFMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP45</accession>
    <name>A0A392MP45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">WAT1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010207</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015891">
        <property type="protein sequence ID" value="MCH89312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030184">
        <property type="entry name" value="WAT1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31218">
        <property type="entry name" value="WAT1-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="14070" checksum="458E23E25333105B" modified="2018-12-05" version="1" fragment="single">NSDGQSVAIDWLWRRWECRYSLSLLQRQFVSPERDITINKFEKGDLSQWKLGWNFRLLTAAYTGIVGTGINFILVTWCVGMRGPLFASVFNPLLLVIVAIVGSLMLDEKLYLGRYIYTFITN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPE4</accession>
    <name>A0A392MPE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016038">
        <property type="protein sequence ID" value="MCH89380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="179"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="191"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="214"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="403" mass="45054" checksum="3A025CFB9A478CCA" modified="2018-12-05" version="1">MYEESVRGFKEVYYGVRPITLKGWQNFVCKGNRIDEDGNEELDDQGKPIEEDFALFPFYWRKEHYSMAPSEFVFKFGELTVEERADYKRLETFVERLPPYLWDDPEGEPLYDGDGERVTSVKLIDIKGLLAXGEPLYDGDGERVTSVKLIDTKGLLACDTPEKLTAFWNRMTSAAEKLRQARAAKNKRDASSAAGASSGLGTSSIQPSPVPSSEVDRSKRIRVEDLDDTASRQQHQVIDLEDPANSLSSSLHKLTPGERDNARRELQVLGRKLEESEASYNGYREQHKTLTSDLKKAEDKAKSLAEERDGSLKEVEELKAKIVELEGKLQESAGAAIVGSDEKEVDPDGEYASSSRAVLINKIHEYESSMVEAASFSFQNVVAQLCVLNPELAVDGLDEDKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPN1</accession>
    <name>A0A392MPN1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glycosyltransferase family 92 protein</fullName>
            <ecNumber evidence="8">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0009489</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glycosyltransferase 92 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="8"/>
    <dbReference type="EMBL" id="LXQA010014470">
        <property type="protein sequence ID" value="MCH88598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008166">
        <property type="entry name" value="Glyco_transf_92"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21461">
        <property type="entry name" value="GLYCOSYLTRANSFERASE FAMILY 92 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21461:SF55">
        <property type="entry name" value="GLYCOSYLTRANSFERASE FAMILY 92 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01697">
        <property type="entry name" value="Glyco_transf_92"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH88598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="391" mass="45959" checksum="E5EBA0C9742E589E" modified="2018-12-05" version="1" fragment="single">TIVFVKGLNLRPEKLGESSRFQCVYGWDFTRTKFFFKSDVLSVAQEIIRCKTPSSILAQAQAHTQAYLKVSIQVEGKKIFPSIARPGFLSTQKQPKRKSHELCICTMLRNQARFMREWVMYHARIGVERWFIYDNNSDDDIENVITFLQSAGYNITWHLWAWVKTQEAGFAHCAVRARASCEWVAFIDVDEFFNIKIKGGLNHVISHYSRPENNVAEIRTPCYSFGPSGLKEVPREGVTMGYTCRLAARERHKSIVRPDALNQTLINVVHHFHLRTPFVATDVEKRVMVINHYKYQVWKVFKQKFYRRVATYVADWQLQQNVGSKDRVPGLGTKPIEPADWSSRFCEVKDMGLRNWVMRNFMDRRTHLLPWQPEFERHIKRRRRRKEKGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRD5</accession>
    <name>A0A392MRD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative nucleolar protein 5-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016563">
        <property type="protein sequence ID" value="MCH89635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031428">
        <property type="term" value="C:box C/D methylation guide snoRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030515">
        <property type="term" value="F:snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.4070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045056">
        <property type="entry name" value="Nop56/Nop58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012974">
        <property type="entry name" value="NOP58/56_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10894">
        <property type="entry name" value="NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10894:SF1">
        <property type="entry name" value="NUCLEOLAR PROTEIN 58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08156">
        <property type="entry name" value="NOP5NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleolar protein 58/56 N-terminal" evidence="1">
        <location>
            <begin position="31"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18174" checksum="D7C99990AABE39C1" modified="2018-12-05" version="1" fragment="single">TYGRSFPVQTQQERLCSAYVLIPTYLNCHVTDVVKLKAFSKFENTSEALEAASLLIDGKASKGLRKFLRANCDNETLAVADSKLGSLIKEKLKIDCVHNNTVMELMRGVRYQLSELISGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRR3</accession>
    <name>A0A392MRR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">C2 and GRAM domain plant-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010909</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017393">
        <property type="protein sequence ID" value="MCH90003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044511">
        <property type="entry name" value="At1g03370/At5g50170-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031968">
        <property type="entry name" value="VASt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46296">
        <property type="entry name" value="BNAA05G37250D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46296:SF8">
        <property type="entry name" value="OS06G0297800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51778">
        <property type="entry name" value="VAST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VASt" evidence="3">
        <location>
            <begin position="44"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16706" checksum="F9716ACD2C95EA58" modified="2018-12-05" version="1" fragment="single">TIMALWKARSLSIEQKVQLVEDDPDNESVTSEESGSFLVSDDISMSEVHSCALPVPVSFFMELFSGGELDCRVMEKSGCVSYSYTPWVSENNDVYERAVYYKFEKRISRYKVEVTSTQQKSLLEGKGWLVEEVMNFHGVPLVAPSLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSC5</accession>
    <name>A0A392MSC5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010833</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017223">
        <property type="protein sequence ID" value="MCH89929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="237"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="440" mass="49753" checksum="9334823DDA0D3D44" modified="2018-12-05" version="1" fragment="single">ASNSGIGAVLSQQGHPIAYFSKKLGPTVQKQSAYVREFRAITEALAKFRHYLLGHKFIIRTDQQSLKALLDQTLQTPEQQAWLHKFIGFDFTIEYKPGKDNVAADSLSRMFLMAWSEPQHLFLEDLRQALPLCPHFGPILQSCLSDTASNSHYTVKDQLLYWKDKLAIPPSSPLIQKLLQEFHSSSIGGHSGTTRTLARISSQFYWPLMKQDVINYVKLCSICQQAKHSTTLPSGLLSPLPIPSQVWEDIAMDFIIGLPNSSGFTVILVVVDRLTKFGHFIPLKSDFDSRTVAEAFMQHIVKLHGVPKSIVSDRDKVFTSKFWQHLFKLQGTTLAMSSSYHPQSDGQTEALNKCLEMYLRCLTFHNPKIWSKVLHLAEYWYNTAFQTSAAMTPFKALYGRDPPTMTRVVGSIDDMDDAAHAQLLSREQILTQLQQNLHKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTP0</accession>
    <name>A0A392MTP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011833</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019323">
        <property type="protein sequence ID" value="MCH90910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099402">
        <property type="term" value="P:plant organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000158">
        <property type="entry name" value="pentatricopeptide repeat-containing protein At2g33680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF533">
        <property type="entry name" value="DYW DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="7"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="111"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="203"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="27021" checksum="614579341B06247B" modified="2018-12-05" version="1" fragment="single">MIQIHNDIISWTAMINGYAEHGYSQEAISLFENISSVGLTPDYVTFIGVLTACNHAGLSGRLSEAEHMVRNMPFPCDDVVWSTLLRACKDHGDVDRGSWAADHVLRLDPNSAGTYITIANIYSASGRWKEATHFRKLMKSKGVIKEPGWSWINVNDQLNTFVAGDQSHPLSEHITTVLELLSTGIGDARLDLEVFTSMEAAENTFPSSKKRAAEQELSRDTPHHNEEDSRYLATGTLKRDSDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU69</accession>
    <name>A0A392MU69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017863">
        <property type="protein sequence ID" value="MCH90228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF34">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="418" mass="46025" checksum="C1086B0B46594BEA" modified="2018-12-05" version="1" fragment="single">ITNPYEPSKPLACITLGSVTKLLPTNYLNWKLQVEAFLDGYDLLQYPDGSLPAPSKTITTTDTTPVTTANPTYQTWRRQDRLIYGALLTTLSNEVASLVSQTKTSHDLWTLLKNTYAKASRSHLKQLKERLRTASKGTQSITTYMHSLKQTGDLLASLGSPISVEDMTDYILRGLDDGYRAVIDGVNARDNSITFDDLLEKLLIQELSIAAVQQQTPAPLTALNAQARPTYNNNKPHPNQIPAQPNQCPGNRKPFLGKCQWCNVKGHVLSECRTFRQQHPGIPPPPRNSPQVNTATAGLPQTDFLVDSGATHHITNDLANMAIHHPYTGPDSLFMGNGSGLNISHSGTLLINDLSLFNALTYRLAKQPIKAHVSMGFTAGPPPYHLFIPFARTHPRHGTIGLGIRHPLFSNLFPSIFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV05</accession>
    <name>A0A392MV05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011042</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017661">
        <property type="protein sequence ID" value="MCH90134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="444" mass="50092" checksum="12B0B5D58FF2F5CB" modified="2018-12-05" version="1" fragment="single">MLESIFLNGLKDEVQAEMKLYDHQDLADMMDRALLIEEKNDTLKKRGIIWRDKGDWKEKGSGSKFRNPGELYKDKKEGLKPMGGGDRGETKNNEVMKGRRLSPSELEDRHKRGLCFKCGEKWGRDHICKFKHMSLRLCEGDSSEEEVEEVQEGDIEEVSGVGELKTLQLSLQSKEGLTSNQSFKVWVMIGDRRLLTLIDSGASSNFIASDLVKELELPLVETPTYVIEVGNGEKVSNQGVCRNLTFQLQGVQFQQNFFLMELGGTDMVLGMDWLASLGNIEANFGELCLKWKSNGFSHRIQGDPAMCTRQASLKAMVKALSDSGVGYYLQSVTVSNQEEQVEGVDAELIALLAEFEDVFNMPSGLPPMREHDHAIILKPGADIPNIRPYRYPYYQKNEIEKIVTEMMQAGIVRHSTSPFSSPVLLVKKKDGGWRFCTDYRALNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW58</accession>
    <name>A0A392MW58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fanconi anemia group J protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019991">
        <property type="protein sequence ID" value="MCH91235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990918">
        <property type="term" value="P:double-strand break repair involved in meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472:SF47">
        <property type="entry name" value="FANCONI ANEMIA GROUP J PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-dependent helicase C-terminal" evidence="1">
        <location>
            <begin position="67"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12334" checksum="F42F146D1135B071" modified="2018-12-05" version="1" fragment="single">TLSPMTSFSSELGVKFEASLEAPHVIDIDSQVLPAIIPTGPGNIPLNASYKTADGYAFQDAVGRSLEEIFKIVSGGCLVFFPSYKLMEKLCTRWSETGQWSRLNAEKSLFVGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXB9</accession>
    <name>A0A392MXB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ankyrin repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0012895</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021559">
        <property type="protein sequence ID" value="MCH91963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026961">
        <property type="entry name" value="PGG_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24186:SF8">
        <property type="entry name" value="ANKYRIN REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24186">
        <property type="entry name" value="PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13962">
        <property type="entry name" value="PGG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="103"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="PGG" evidence="9">
        <location>
            <begin position="99"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH91963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="280" mass="30568" checksum="52B08DF8DF923181" modified="2018-12-05" version="1" fragment="single">NVRCLLSKEGININATNKAGETPLDIAEKFGSPDLVSLMRDAGAVNSTDQGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEAKVQGFSLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWLACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRIDETKLRAESRSFSMSHASDQEILNGEYKRMYAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY55</accession>
    <name>A0A392MY55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022248">
        <property type="protein sequence ID" value="MCH92242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14373" checksum="646DC5ACCEB326F3" modified="2018-12-05" version="1">MSMGGRSEEARKIHWDKVCIDRENGGLGVRRVSEFNLSLFGKWWWRMLVEREGLWFKVLAAKYGVEDGLILGGGNKASVWWEDLVRVKEGRGHLVGRWFDDNVSRVMGDGESLSFWMDDWLGGIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYC6</accession>
    <name>A0A392MYC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022432">
        <property type="protein sequence ID" value="MCH92323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017306174" evidence="2">
        <location>
            <begin position="23"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="10263" checksum="BD2C2C4EFCA4409D" modified="2018-12-05" version="1">MHYALCIMRSTFLVLLRSAVDAFCTFGVAAFCIFGFVVFFIFGDATFCVVVLWFFHQHWREYNFLQMGTPFERVQVRTGYWYSWDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2K4</accession>
    <name>A0A392N2K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">40S ribosomal protein S20-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0014324</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024798">
        <property type="protein sequence ID" value="MCH93375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="entry name" value="Ribosomal protein S10 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_uS10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_uS10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_uS10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="Ribosomal protein S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Small ribosomal subunit protein uS10" evidence="4">
        <location>
            <begin position="18"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH93375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7220" checksum="576A4FE84A0FB5ED" modified="2018-12-05" version="1">MSARCGYVVALPYVPSILGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N343</accession>
    <name>A0A392N343_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase-like hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026253">
        <property type="protein sequence ID" value="MCH94003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N343"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12725">
        <property type="entry name" value="HALOACID DEHALOGENASE-LIKE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12725:SF82">
        <property type="entry name" value="HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16182" checksum="A25657346C19FE45" modified="2018-12-05" version="1" fragment="single">MVEKLGIDSSKIDDLSNLLYKNYGTTMSGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPILRNLLLSLPYRKLVTLSRLGLEDCFEGIICFETLNPIHKSTVSDDEDDIEFVVLPKTPIICKPSEFAIELALKIANINPQRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N531</accession>
    <name>A0A392N531_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015043</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026459">
        <property type="protein sequence ID" value="MCH94088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N531"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447">
        <property type="entry name" value="OS03G0856100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447:SF17">
        <property type="entry name" value="OS12G0638900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="9"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="57"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9990" checksum="60FA48ED61F70724" modified="2018-12-05" version="1" fragment="single">MKSEGRSPNVYHYSSLLNAYSASGNVKKADALIQDMESEGLVPNKVILTTLLKCMLEELPYCVLMDGLAKARQMHEAKVVFDEMMKKHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5A7</accession>
    <name>A0A392N5A7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0015962</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028657">
        <property type="protein sequence ID" value="MCH94990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5A7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338:SF66">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338">
        <property type="entry name" value="TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="5">
        <location>
            <begin position="10"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="22"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH94990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="25544" checksum="D986BB190C386657" modified="2018-12-05" version="1" fragment="single">YKTMIMVDSIVSFTIERLGDLLIEEANLLSGVSDQIQKLQNELKRMQCFLRDAERKQDEGGETIKNWISEIKKLAYDAEDVIEIYAIKISLSSAMTPFYKLRHVHKVGNKILSINSQIADLTRSLQTYGLTATTRDNEESHFVFETRRQLRWSYSHVVEEFIVGLDGDIKKVVEWLLNQDQHCPMVYICGMGGLEERFGREFYFSLLLPLPKKREMRLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5X3</accession>
    <name>A0A392N5X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027595">
        <property type="protein sequence ID" value="MCH94555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13503" checksum="3A5C2CC8F9E9F22C" modified="2018-12-05" version="1">MVLLNMFLVSPTYWSIYLRVRAFSDLVRRKLASTATVSVVDFVTQLMGYGWLRIVWLAMVVVACFRLHNXVGSSNCSMLADESIRIVLKICLWIAFKLLNSKETDIACCRVCCKEMMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6N5</accession>
    <name>A0A392N6N5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029307">
        <property type="protein sequence ID" value="MCH95243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6N5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="66"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12565" checksum="4F0D11491A1D26E4" modified="2018-12-05" version="1" fragment="single">MIGNGVDTLFWTDPWLGGVPLRVLFGRLFELSNCQTSTVAVMYALGWEEGGVAWQWRRQHDQGGGYSVRSAYKLLTSMATPNIDALSNFLWHKQVPAKVSVLAWRLVRNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6T6</accession>
    <name>A0A392N6T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0015161</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026775">
        <property type="protein sequence ID" value="MCH94204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000432">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase EFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051809">
        <property type="entry name" value="Plant_receptor-like_S/T_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27008:SF523">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27008">
        <property type="entry name" value="OS04G0122200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 12 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="11 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 13" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="53"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="108"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH94204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="293" mass="32445" checksum="52CDF132AE76A713" modified="2018-12-05" version="1" fragment="single">MLEGEVPTVGVFGNATQVAMIGNNKLCGGISELHLPPCPTKXRKHAKNHNFKLITMIVSVVSFILILSFILLIYWMGKSNKKPFIDSPTIDQLAKVSYQDLHRGTDGFSDRNLIGAGSFGSVYRGNLLSEDSLVAVKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLDQWLHTEILNAEPPIKLDLNQRLNIIIDVASALHYLHQECEQLVLHCDLKSNNVLLDDDLVAHVSDFGIARLVSVIGDTSHKDTITIGRRGSLGYAPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8A3</accession>
    <name>A0A392N8A3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031320">
        <property type="protein sequence ID" value="MCH96030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8A3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240:SF15">
        <property type="entry name" value="GAG-PRO-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240">
        <property type="entry name" value="OS08G0508500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="272"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="297" mass="33185" checksum="053AEFF44AF0B411" modified="2018-12-05" version="1" fragment="single">IKRKFEELESVCSINPVTVSAVKEGYIPLAFYREEVPGGSPNYQIPLLVRARMANFDVHRILVDQGSSCDVMYSGLFKTLQLTEKNLVPYVGADLQGFNCSTTKPWGYVDLIVTFGEDKAMKSVKVQFLVVDCPSLYNCIIGRMTLAELFAVSSTIHLKMKYYTKDGQVTTINGDIAAARRCFEAATPNPVDLDARLTKKEHKEEKQKDKDPGTEKIYRPIPDGDFEIIPHGDDPTTGIKIELFAWSAAEMPEIDPEVACHQLTVDPRASVVVQRHRKQSPEKSGGCRKSCKRPLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8H0</accession>
    <name>A0A392N8H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nudix hydrolase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031498">
        <property type="protein sequence ID" value="MCH96097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047631">
        <property type="term" value="F:ADP-ribose diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003293">
        <property type="entry name" value="Nudix_hydrolase6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994:SF29">
        <property type="entry name" value="NUDIX HYDROLASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994">
        <property type="entry name" value="NUDIX HYDROLASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="12179" checksum="33EF58A6D0BCFB1D" modified="2018-12-05" version="1" fragment="single">QSHMSFFEKSDLFFVCLLRPLSFDIKIQEVEIEAAKWMPFDEYVAQPFMEKYELLRYINDIYLAKVDGHYSGFTPVPTKSNFSDQKNTSYLYLNAGGLKRCNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8S8</accession>
    <name>A0A392N8S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031304">
        <property type="protein sequence ID" value="MCH96022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5746" checksum="1BF6C343F641B93C" modified="2018-12-05" version="1" fragment="single">MEQPLPNRARGNGATASLRREREMEFQEAGGHRRRVAQPQPEAQPHPDRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9Q1</accession>
    <name>A0A392N9Q1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AC transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016837</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030860">
        <property type="protein sequence ID" value="MCH95855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025525">
        <property type="entry name" value="hAT-like_transposase_RNase-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272">
        <property type="entry name" value="BED FINGER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272:SF21">
        <property type="entry name" value="BED ZINC FINGER AND HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14372">
        <property type="entry name" value="hAT-like_RNase-H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="hAT-like transposase RNase-H fold" evidence="2">
        <location>
            <begin position="50"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="187"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="unsure residue" description="D or N" evidence="3">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="297" mass="33770" checksum="0DE27E4FC80B98E7" modified="2018-12-05" version="1" fragment="single">MQAGKSVDAIIRKYEETLGSRRLLSPSDKSVVNIMHQYLEPFYKTTNDICTSKVPTIGLVLFFMDNISDTIATCRESRPSPEWLKSAAEEMAKKARNYTNQVCNIFTYMTAILDPRIKGELIPESLNSQSYLDEARTHFIRNYSINHFSSLSSGYNGQEIEDGGNVSFAEEIARKKRRTNMSSATDELTQYLSEAPAPIXTDVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRFCMQNDSTQAVLCIKSWIQVGIKFKYKSMEIDYERLMELAAASATHNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND73</accession>
    <name>A0A392ND73_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">very-long-chain 3-oxoacyl-CoA synthase</fullName>
            <ecNumber evidence="3">2.3.1.199</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0018486</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a very-long-chain acyl-CoA + malonyl-CoA + H(+) = a very-long-chain 3-oxoacyl-CoA + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:32727"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:90725"/>
            <dbReference type="ChEBI" id="CHEBI:90736"/>
            <dbReference type="EC" id="2.3.1.199"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.199" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010035084">
        <property type="protein sequence ID" value="MCH97491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009922">
        <property type="term" value="F:fatty acid elongase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00831">
        <property type="entry name" value="CHS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012392">
        <property type="entry name" value="3-ktacl-CoA_syn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013601">
        <property type="entry name" value="FAE1_typ3_polyketide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31561">
        <property type="entry name" value="3-KETOACYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08392">
        <property type="entry name" value="FAE1_CUT1_RppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FAE" evidence="7">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-ketoacyl-[acyl-carrier-protein] synthase III C-terminal" evidence="8">
        <location>
            <begin position="170"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH97491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="32157" checksum="978F28D14F7CF519" modified="2018-12-05" version="1">MGCSASVISISLAKDILKSNLNSYAVVVSTENLTLNWYKGNDRSMLLTNCIFRMGGAAILLSNKSSDRIRSKYELVHTVRTHIGDNDKNYKCAYQREDDAGNIGLALSKDLKDVAFQALKTNITLLGPLVLPFSEQFMFFISFVKRKLLKEDSSSKVKPYIPNFKLAFEHFCIHAGGKTVLDVLQNNLQLSVWHMEPSDSTLHRFGDMSSSSIWYVLAYTEAKGRVSKGDRVWQITFGSGFKCNSVVWRACRDMPVVEDWRGNPWDDSXNNYPVDVSTTSSPNLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDH9</accession>
    <name>A0A392NDH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Enzymatic polyprotein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0018188</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034328">
        <property type="protein sequence ID" value="MCH97195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF441">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE, RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="186"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH97195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="291" mass="33486" checksum="1171A68ECF6128FD" modified="2018-12-05" version="1" fragment="single">MCKGVSLKLGDLEVVVDAMVLDLGGLDVVLGVSWLCTLGKVMMDWKALTMQFCHKGRQVVLKGGGENKEQHGYLNSFLKDRQGRVSDDWWLSPHSQELRSKEVMDEGLKKLLQRFSEVFNDSIKLPPKRAQSHQIKLFPNQRAVNVRPYRYPHNQKEEIERQVSELLEAGVIRQSMSAFSSPVILVKKKDNSWRMCVDYRALNKAIVPDKYPIPIVDELLDKLFGATIFSKIDLKSGYHQIRVVDEDIHKTAFRTHNGHYEYLVMPFGLMNAPATFQATMNEIFRPHLRKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDI1</accession>
    <name>A0A392NDI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018887</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036170">
        <property type="protein sequence ID" value="MCH97890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="363" mass="39642" checksum="4538FD2AD07FC912" modified="2018-12-05" version="1" fragment="single">TGNVNSVLTNQSSQPILPTSSNAYETYPFFYEDPIIQQGGTSQYPIHNGPFPSNSSARNLGEVPVSLPTHGLVNQGIVSEGQASSELHVQRKGDNVIHTANDRVKVLSTEAPYSLPSHPFEGSLQGNLSEAPVPAAVSEALHPALPLENKIPAVVSEALNPTQISRSGEDDFYTASADAFSRALVDAESNVIDFSCLEPPPLPNRVYYSERIFPREQADLLNRSAKSDDAYGSHLLMSDLLSDLNHMNSVNESSDMLHNENLSNLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQLVDSDLKRVLSDNKISENETNVSKGSPKVLQVDETKGSERLAFRRVPSVEHNVNLASKLQDNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE87</accession>
    <name>A0A392NE87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0018858</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036103">
        <property type="protein sequence ID" value="MCH97861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="5">
        <location>
            <begin position="30"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="4">
        <location>
            <begin position="210"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="95"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="106"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH97861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="329" mass="38090" checksum="BB3BAA493C100127" modified="2018-12-05" version="1" fragment="single">CPTLAVKDVTPEEAWSGVKPSVNHFRVFGCIAHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKKIVVSRDVIFEEDKQWDWEEKQTVADLEWNDGENEERVSENDNEERVSENDNQGNVEKEREVIREEEHDSNEGEEIVKEYRERRPPGWMSDFESGEGLSEDEAHMALMVSIDPLCFEEAVKSENWRLAMEKEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKIDKYKARLVAKGYSQKHGVDYTEVYAPVARMDTIRMIIAIAAHKNWQIFQLDVKSAFLHGKLDEDVYVEQPRGYEKIGSEHLVYKLHKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF02</accession>
    <name>A0A392NF02_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035933">
        <property type="protein sequence ID" value="MCH97789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017365136" evidence="1">
        <location>
            <begin position="18"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5611" checksum="CB065E60C40C6BB7" modified="2018-12-05" version="1">MFLVSILLSLPLLLLDAGGSDDAEGGEEEEAEGSRQPTQIMTNWNGVMYKLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFF7</accession>
    <name>A0A392NFF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin-specific protease family C19 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018872</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036136">
        <property type="protein sequence ID" value="MCH97875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040339">
        <property type="entry name" value="At1g16860-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33709">
        <property type="entry name" value="OSJNBA0035M09.9 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33709:SF32">
        <property type="entry name" value="UBIQUITIN-SPECIFIC PROTEASE FAMILY C19-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="148"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="16001" checksum="61FA0243F589D889" modified="2018-12-05" version="1" fragment="single">MGSRIPSHQLSNGLYVSGRPEQPKERLPTMTSAAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPITGAPSRTTSFGGAGSHSGPIHPNAAARAIYTTGGGSTSQKKSNSGPLSKHGEPVKRSSGPQSGGVTPTGRQNSGPLPPILPTTGLITSGPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGZ9</accession>
    <name>A0A392NGZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019397</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037480">
        <property type="protein sequence ID" value="MCH98395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6317" checksum="4D30439103809679" modified="2018-12-05" version="1" fragment="single">GETVITVGVIWQHRVVRVVEMNPRVPERVKDCIRCRRYTVAITFVIPSLREKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHL3</accession>
    <name>A0A392NHL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036455">
        <property type="protein sequence ID" value="MCH98004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021788">
        <property type="entry name" value="CPP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372:SF10">
        <property type="entry name" value="OS03G0137300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12688" checksum="E593238AE7014395" modified="2018-12-05" version="1" fragment="single">MTATTATIPVRSDRISAGSPFPRPPPVHQLRKPILTEPWRTSPLQRRWRHASTRRSVVGPVHASSRADDSAPFEMSVENALKLLGVSKDASFDDVLRAKNSIVASCKDDQETISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIK1</accession>
    <name>A0A392NIK1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0019304</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010037240">
        <property type="protein sequence ID" value="MCH98304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45977:SF4">
        <property type="entry name" value="RING-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45977">
        <property type="entry name" value="TARGET OF ERK KINASE MPK-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH98304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16777" checksum="C6A7CDCB793A07AD" modified="2018-12-05" version="1" fragment="single">RVHAARPSNXNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJ40</accession>
    <name>A0A392NJ40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Vacuolar-sorting receptor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041725">
        <property type="protein sequence ID" value="MCH99916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJ40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12630" checksum="446017586826934F" modified="2018-12-05" version="1" fragment="single">IDECKDKKACQCPECSCKNTWGSYNCTCSGDLLYIRDHDTCISKTAASQEGKSAWAAFWVIVIGLVLAASGGYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVNDERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NND1</accession>
    <name>A0A392NND1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0021616</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043689">
        <property type="protein sequence ID" value="MCI00596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NND1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:001143">
        <property type="entry name" value="Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050647">
        <property type="entry name" value="Plant_LRR-RLKs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056:SF45">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="337" mass="36803" checksum="AFFD40EDC48E83D3" modified="2018-12-05" version="1" fragment="single">NLRHLHLGGNYFTGQIPPEYGLWQRLEYLAVSGNEIIGTIPPEIGNLTSLRELYIGYYNTYTGGIPPQIGNLTELIRLDAAYCGLSGEIPPEMGKLQKLDTLFLQVNALSGSLTWELGNLKSLKSMDLSNNMLTGEIPTSFGELKNLTLLNLFRNKLHGAIPEFIGDMPALEVVQLWENNFTGNIPVSLGTNGRLTLLDISSNKLTGTLPPYLCSGNHLQTLITLGNFLFGPIPESLGNCESLNRIRMGDNFLNGSIPKGLFGLPKLTQVELQDNYLSGNFPETHTVSVNLGQITLSNNQLSGTLPPTIGNFSSMQKLLLDGNMFSGKIPSQIGRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NP15</accession>
    <name>A0A392NP15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peroxisomal-2-hydroxy-acid oxidase GLO1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0022634</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>glycolate + O2 = glyoxylate + H2O2</text>
            <dbReference type="Rhea" id="RHEA:25311"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:29805"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="EC" id="1.1.3.15"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:25312"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Photosynthesis; photorespiration; glycine from 2-phosphoglycolate: step 2/3.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046587">
        <property type="protein sequence ID" value="MCI01607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NP15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003973">
        <property type="term" value="F:(S)-2-hydroxy-acid oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009854">
        <property type="term" value="P:oxidative photosynthetic carbon pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578:SF107">
        <property type="entry name" value="2-HYDROXYACID OXIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578">
        <property type="entry name" value="S -2-HYDROXY-ACID OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="3" id="KW-0323">Glycolate pathway</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00036241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI01607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11986" checksum="06C4E4F01AF71D5B" modified="2018-12-05" version="1" fragment="single">IGRPVVFSLAADGEAGVRKVLEMLHDELEITMALCGCPSLKDITRDHVVTEWDNPRIAPRDYNLVGDFATPLCAVSSFQAEFLVSLFSIEQAQQDGQHKIWLLESNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU22</accession>
    <name>A0A392NU22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative LRR receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0023938</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050553">
        <property type="protein sequence ID" value="MCI02904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NU22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45974:SF134">
        <property type="entry name" value="OS01G0960400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45974">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI02904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9654" checksum="4B086C0DDB89500B" modified="2018-12-05" version="1">MSKLLKLSLKNCNLKGPIPDLSRMPHLLYLQRVKTMHFSDLSFNQLNESIPSRLSENITTIDLSNNELTGTIPSSFSSLPRLQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVE5</accession>
    <name>A0A392NVE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Auxilin-related protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024839</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053313">
        <property type="protein sequence ID" value="MCI03798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031982">
        <property type="term" value="C:vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072318">
        <property type="term" value="P:clathrin coat disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072583">
        <property type="term" value="P:clathrin-dependent endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172">
        <property type="entry name" value="AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172:SF19">
        <property type="entry name" value="J DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11778" checksum="8C44667E3DEC83E1" modified="2018-12-05" version="1" fragment="single">LAETLDFEVKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAATVKKAYRKATLCIHPDKVQQKGATLQQKYIAEKVFDLLKPIPFEGDNSVISATSSIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NW57</accession>
    <name>A0A392NW57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Clathrin heavy chain 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023759</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049999">
        <property type="protein sequence ID" value="MCI02725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NW57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071439">
        <property type="term" value="C:clathrin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032051">
        <property type="term" value="F:clathrin light chain binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055358">
        <property type="entry name" value="CHCR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000547">
        <property type="entry name" value="Clathrin_H-chain/VPS_repeat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10292:SF12">
        <property type="entry name" value="CLATHRIN HEAVY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10292">
        <property type="entry name" value="CLATHRIN HEAVY CHAIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00637">
        <property type="entry name" value="Clathrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00299">
        <property type="entry name" value="CLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50236">
        <property type="entry name" value="CHCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="CHCR" evidence="1">
        <location>
            <begin position="37"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21899" checksum="2057882AB9B2733A" modified="2018-12-05" version="1" fragment="single">SLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYSEQLGVDGCIKIFEQFRSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWN8</accession>
    <name>A0A392NWN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-amyrin synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053509">
        <property type="protein sequence ID" value="MCI03864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005811">
        <property type="term" value="C:lipid droplet"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042300">
        <property type="term" value="F:beta-amyrin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016104">
        <property type="term" value="P:triterpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018333">
        <property type="entry name" value="Squalene_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11764:SF58">
        <property type="entry name" value="BETA-AMYRIN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11764">
        <property type="entry name" value="TERPENE CYCLASE/MUTASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15248" checksum="FCE07FB76B4AEDAA" modified="2018-12-05" version="1">MWRLKIADGGNDPYIFSTNNFVGRQTWEYDPHAGTTEERAQVEEARRNFYDNRFKVKPCGDLLWRFQVLRENNFKQTIDGVKIEDGEEITYEKATTTLRRGTHHLAALQTSDGHWPAQIAGSLYFIPPLVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ56</accession>
    <name>A0A392NZ56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0026097</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057381">
        <property type="protein sequence ID" value="MCI05048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZ56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="133"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI05048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21972" checksum="20DD5A1272DAEC6D" modified="2018-12-05" version="1">MSELVESFVDLQIDEETPEPEPISEVSEAHPASRSDKDETNRTSEEPLESNEDQEEHGSPISPKSSFKYKSSHPEELIIGNKDSLRKTRSAFKQNESLLGLISLIEPTSVDEAISDDGWIVAMQEELNQFERNDVWCLVPKPPHKNIIRTKWVFQNKINEQGEVVRNKARLVAQGYSQREVEVGTGQTGLQGPMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ82</accession>
    <name>A0A392NZ82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055816">
        <property type="protein sequence ID" value="MCI04570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZ82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3082" checksum="C53E4706B7E89743" modified="2018-12-05" version="1" fragment="single">MKGFAAALRLSLPQVPQLEPSFSSLAPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZN1</accession>
    <name>A0A392NZN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0026287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058026">
        <property type="protein sequence ID" value="MCI05237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="25721" checksum="285184A7318E4085" modified="2018-12-05" version="1" fragment="single">VAASFDAKSSYVNKLKKWNDLYGEGGSRKKEEQLNVIRRRLGSWGNKYVSLGGRIVLINAVLNAIPIFYLSFMKMPVKVRREVVKIQRKFLWGGLSNRIKTCWVKWEDICRPKNEAGLGLRDLRLVNISLLAKWRWKLLSHDQEVWKSIVTAKYGWDIIGKRELGNLDVPRTASLWWRDLCLLDAENGWFRLAVGKKVGCGHSTSFWNEVWTGGQSLRQRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC99</accession>
    <name>A0A392PC99_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Secreted protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0030822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073696">
        <property type="protein sequence ID" value="MCI09733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017364703" description="Secreted protein" evidence="1">
        <location>
            <begin position="23"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="86" mass="9321" checksum="DE1338011F532F09" modified="2018-12-05" version="1" fragment="single">RCPAVFWPLLFAAVRWIAGGWGGAGGCDGSELEVMRGVVVSLYRVDLVRVGVDCLETDCELKLICLGFHSTVVPSIFGSRELLFGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCB2</accession>
    <name>A0A392PCB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073681">
        <property type="protein sequence ID" value="MCI09728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11717" checksum="DE84313D54D133C8" modified="2018-12-05" version="1" fragment="single">LMLDNVDNIHHFIDSTWRLCTVVGGWFSGLISKPYRKVVGSAFDGSILAEERENYYLDSMDQCIYISSSDDELEEIEDPGRLLPKWAGSERNSAMEAQVSIRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHI8</accession>
    <name>A0A392PHI8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Molybdopterin synthase catalytic subunit</fullName>
            <ecNumber evidence="4">2.8.1.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Molybdenum cofactor synthesis protein 2 large subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Molybdenum cofactor synthesis protein 2B</fullName>
            <shortName evidence="4">MOCS2B</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0031448</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2 [molybdopterin-synthase sulfur-carrier protein]-C-terminal-Gly-aminoethanethioate + cyclic pyranopterin phosphate + H2O = molybdopterin + 2 [molybdopterin-synthase sulfur-carrier protein]-C-terminal Gly-Gly + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:26333"/>
            <dbReference type="Rhea" id="RHEA-COMP:12202"/>
            <dbReference type="Rhea" id="RHEA-COMP:19907"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58698"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="ChEBI" id="CHEBI:232372"/>
            <dbReference type="EC" id="2.8.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterotetramer; composed of 2 small (MOCS2A) and 2 large (MOCS2B) subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MoaE family. MOCS2B subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.12" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010075909">
        <property type="protein sequence ID" value="MCI10355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHI8"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990140">
        <property type="term" value="C:molybdopterin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030366">
        <property type="term" value="F:molybdopterin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00756">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1170.40:FF:000002">
        <property type="entry name" value="Molybdopterin synthase catalytic subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.40">
        <property type="entry name" value="Molybdopterin biosynthesis MoaE subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_03052">
        <property type="entry name" value="MOC2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036563">
        <property type="entry name" value="MoaE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028888">
        <property type="entry name" value="MOCS2B_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003448">
        <property type="entry name" value="Mopterin_biosynth_MoaE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23404">
        <property type="entry name" value="MOLYBDOPTERIN SYNTHASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02391">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54690">
        <property type="entry name" value="Molybdopterin synthase subunit MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="84"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="107"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI10355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17930" checksum="ED1E9F327696F512" modified="2018-12-05" version="1">MNFVSAPQAGAIATFSGTTRDTFDGKTVLELIYEAYIPMAIRCIKSVCTSARESWNLHSIAVAHRLGTVPVGETSVFIAVSSVHRADALEACRYLIDEIKATVPIWKKEVYSNGEVWKENTEFLERRSELGKKDVAVEIKEHKKKLCCGTKVRVNHEGSQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK15</accession>
    <name>A0A392PK15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase C869.01-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0033523</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084101">
        <property type="protein sequence ID" value="MCI12418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="entry name" value="Amidase signature (AS) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678">
        <property type="entry name" value="AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678:SF25">
        <property type="entry name" value="AMIDASE C869.01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="Amidase signature (AS) enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017444043" evidence="1">
        <location>
            <begin position="26"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="56"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="19842" checksum="09CF0670CDF1991B" modified="2018-12-05" version="1" fragment="single">MGATTTKVSIFLILFAVSFRGFINAKDECLEFEIIEATIEDLQKAFTLTHLTSRKLVDFYLNRIELLNPILRAVLEVNPXALDQADKADRERREDRNRSLLHGIPVLLKDSIATFDKLNTTAGSFALLGSKVPRDAHVVSKLRDAGAIILGKTSLSEWYGIRSHTMPEAWCARGGFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSJ9</accession>
    <name>A0A392PSJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0035017</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090078">
        <property type="protein sequence ID" value="MCI13895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6548" checksum="D438E91FE69D6BE1" modified="2018-12-05" version="1">MVEWSMIAMDMPTDVAIWDKLEWSIEAADKVTDATDIAEAGNGLYHDRCCYPCHDLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PT83</accession>
    <name>A0A392PT83_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">peroxidase</fullName>
            <ecNumber evidence="4">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0036179</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="13">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010094776">
        <property type="protein sequence ID" value="MCI15044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.520.10:FF:000001">
        <property type="entry name" value="Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019794">
        <property type="entry name" value="Peroxidases_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31235">
        <property type="entry name" value="PEROXIDASE 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00461">
        <property type="entry name" value="PLPEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00436">
        <property type="entry name" value="PEROXIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0106">Calcium</keyword>
    <keyword evidence="11 15" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0349">Heme</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="7 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 19" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="17" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="17">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017434187" description="peroxidase" evidence="17">
        <location>
            <begin position="25"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="18">
        <location>
            <begin position="26"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="14">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="36"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="15">
        <location>
            <begin position="69"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCI15044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17397" checksum="29CD246EE0012C05" modified="2018-12-05" version="1" fragment="single">MVRMHAILCTLVLFILSVSTLTSSKSLEFGFYKTTCPSAEAIVRRAVNKAVSLNPGIAAGLIRLHFHXCFVRGCDGSVLLETTPXKPSEKDHPANNPSLRGFEVINEAKAQIEAACPKTVSCADILAFAARDSTRKVSGGIYYSVPSGRRDGRISIFDEVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8Z7</accession>
    <name>A0A392Q8Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ethylene-responsive transcription factor ABR1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0040885</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116269">
        <property type="protein sequence ID" value="MCI19725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009873">
        <property type="term" value="P:ethylene-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.730.10:FF:000001">
        <property type="entry name" value="Ethylene-responsive transcription factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044808">
        <property type="entry name" value="ERF_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190">
        <property type="entry name" value="DNA-BINDING DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190:SF421">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="8">
        <location>
            <begin position="32"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="89"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="7"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI19725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18968" checksum="1E6A5ECFEAC71B71" modified="2018-12-05" version="1" fragment="single">TEATTPTSTSNATQSNEAAATNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTSTRPNFPANTSTVSNSPATHYSPAPPQPLQMQTQPPFVQFQGTSDLLRDYYQYSQLLKGSGDFQGLEQWFYESQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTM0</accession>
    <name>A0A392UTM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967421">
        <property type="protein sequence ID" value="MCI79157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="26"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6458" checksum="898D6CD6DDA8FD7E" modified="2018-12-05" version="1" fragment="single">EAIVNTNGNNAQVNNKTSIVELNGTRNINGQGNGNLRNNGSGRRGRKSPNPHSSDNGSNRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUG9</accession>
    <name>A0A392UUG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010958570">
        <property type="protein sequence ID" value="MCI78762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8204" checksum="904504A27EADB08A" modified="2018-12-05" version="1" fragment="single">DSSDFEDIQPVSEDKGVEGTFTTAVVSKKKRAGKEKLKEVIKEKEKRKRVAVSDSDRVSKKPRTQKKKEQQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUZ9</accession>
    <name>A0A392UUZ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099982</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010956964">
        <property type="protein sequence ID" value="MCI78711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="6010" checksum="E236660B1CE81F65" modified="2018-12-05" version="1" fragment="single">MNLPKNSITRYADFHRKFIHQFARSKHVQVTATSLFSIRQGNSETLREYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVT5</accession>
    <name>A0A392UVT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100272</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963857">
        <property type="protein sequence ID" value="MCI79001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5915" checksum="357ECE32E6278CF7" modified="2018-12-05" version="1" fragment="single">AVRELQAAQAATVAPQPPAAAAQQEQHQVPPHIPQQHQYTDFELGMAATLYEQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVU4</accession>
    <name>A0A392UVU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964040">
        <property type="protein sequence ID" value="MCI79011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3819" checksum="75F8C24BD7114BDC" modified="2018-12-05" version="1" fragment="single">MCGRAMVCPHLPGRVLKQYGHVQSIPRDPTLSAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXP6</accession>
    <name>A0A392UXP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative inactive receptor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0101898</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999850">
        <property type="protein sequence ID" value="MCI80627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050994">
        <property type="entry name" value="At_inactive_RLKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48010:SF26">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48010">
        <property type="entry name" value="OS05G0588300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI80627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8400" checksum="38911F739BE3C3DC" modified="2018-12-05" version="1" fragment="single">RASAEVLGKGTFGTVYKAALEDATTVAVKRLKEVTVGKREFEQQMEIVGRIRHDNVAALRAYYYSKEEKLMVYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWL7</accession>
    <name>A0A392LWL7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Bifunctional L-3-cyanoalanine synthase/cysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000057">
        <property type="protein sequence ID" value="MCH79349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050214">
        <property type="entry name" value="Cys_Synth/Cystath_Beta-Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10314">
        <property type="entry name" value="CYSTATHIONINE BETA-SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="23099" checksum="5BB4E50D93446ECD" modified="2018-12-05" version="1">MMTILVLDIQGIGTGGTITGVGKFLKEKNSDIKVYGVEPSESAVLRMEKNEGKTCHSQAYGLSINGFQMSLLLRSKKTENLPQALVKEAIVDERFEDVRSRNTISYTQEQSTTKIDNGHLSAMESTPGPCIGRTARKSVTERNNVAAPAPPSLSKSTFLKQHSTASFIALYIAIASALPPQEHSCPNLSKPRRIIALCIHLAIKFMNNLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWW8</accession>
    <name>A0A392LWW8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Lipoxygenase</fullName>
            <ecNumber evidence="15">1.13.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0000199</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 14">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="15">Lipid metabolism; oxylipin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the lipoxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.-" evidence="15"/>
    <dbReference type="EMBL" id="LXQA010000117">
        <property type="protein sequence ID" value="MCH79450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWW8"/>
    <dbReference type="UniPathway" id="UPA00382"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031408">
        <property type="term" value="P:oxylipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.375.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.372.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020834">
        <property type="entry name" value="LipOase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020833">
        <property type="entry name" value="LipOase_Fe_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001246">
        <property type="entry name" value="LipOase_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027433">
        <property type="entry name" value="Lipoxygenase_dom_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00468">
        <property type="entry name" value="PLTLPOXGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00308">
        <property type="entry name" value="LH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00711">
        <property type="entry name" value="LIPOXYGENASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00081">
        <property type="entry name" value="LIPOXYGENASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 14" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="13 15" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="11 14" id="KW-0408">Iron</keyword>
    <keyword evidence="5 15" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 15" id="KW-0925">Oxylipin biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoxygenase" evidence="16">
        <location>
            <begin position="139"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH79450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="474" mass="52529" checksum="F9E9BD50119822DD" modified="2018-12-05" version="1" fragment="single">MFSGIAGMMNRDQKLKGTVVLMQKNVLDINELTAVKPDPIGIIGGVFGAVAGAAGTFIDTATSFLGRNVALKLISATVADGSGKGKVGKQTFLEGLLSSIPTLGDKQSAYDIHFEWNSDMGIPGAFYIENFLQHEFFLTYLPSDIPAPLVYYIEEEFKTLRGDGKGERKEWERVYDYNVYNDLGDPDSKATLARPVLGGSSTLPYPRRDPKSESRSGFVYLPRDESFGHTKSSDFLAYILKSASQNVIPRLRSVVTLQFNQPEFNTFEDVRSLYDGGIKVPTNFLSDIAPIPLLKEILRTDGESALKSVQPKVAQVDHSAWMTDEEFAREMIAGVTPHIIKKLEEFPPKSKLDSKLFGDNTSTITKEQLEPNLGGVTVTVEQPLAIELSKPHPQDDSYGPVSDVYLPASEGVEARIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATKRHLSVVHPIHKLLLPHYRDTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX93</accession>
    <name>A0A392LX93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0000329</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000203">
        <property type="protein sequence ID" value="MCH79577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001091">
        <property type="entry name" value="Probable disease resistance protein At1g61300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000322">
        <property type="entry name" value="Probable disease resistance protein At1g63360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF51">
        <property type="entry name" value="DISEASE RESISTANCE RPP13-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="4">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="5">
        <location>
            <begin position="227"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="6">
        <location>
            <begin position="370"/>
            <end position="668"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH79577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1071" mass="121722" checksum="237C24AF5B89D680" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYJ1</accession>
    <name>A0A392LYJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000615">
        <property type="protein sequence ID" value="MCH80037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11468" checksum="4093A4E7681CA41F" modified="2018-12-05" version="1">MTNPSLRELKRKIKDILGRKRKLDADKYFKVYMQECLKATDVPPIDFGDPAEGGGRGGGGEGKESEDISNSEALRKHELSSDEREWKSADAKDDLSLSVWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ08</accession>
    <name>A0A392LZ08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000991</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000810">
        <property type="protein sequence ID" value="MCH80226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="250"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30018" checksum="1B5233A820ABDE6B" modified="2018-12-05" version="1" fragment="single">SLGLGPSKKQKGVLGLIQGPIIEDQNDDVSGRGTNSLNRKNHGGDNEQTQFHSIEHLQHQNIDPLHMVNIENHESNNGSCEVHQQLLNPNSQGQQSGENELLEDTQMQNRSLYAKDFSTSNKSEKHKHVMENLKKRRRRRIVPKLKDLARAKTINMKTKKRKQVKNLTVSNGNAVEPELVNQVNISIDSSCSKEISEWRKWVLLHDEPNEVASKVWEFGRKEGVSYSGDERGVVKELEGIEVRDKDKTEXXNSKGNQGGESNMSGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZZ6</accession>
    <name>A0A392LZZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001257">
        <property type="protein sequence ID" value="MCH80612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="88"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16598" checksum="542DBD0A01FCE60F" modified="2018-12-05" version="1">MTLWRSVKITHEAFSPHLVVVVPPAFGHDPLFSEETEVVVSNAEKGILESLGHVAMRNVIKESSVAVFNLLEAVSFLNGRECKYLQERDDARQQLTLLEKKLSESEVSCEAYREQHKTLSSDLQKAEDKIKMLDEEWDAALQEVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0D7</accession>
    <name>A0A392M0D7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001065">
        <property type="protein sequence ID" value="MCH80448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10387" checksum="BECAFFA5EF0B36CF" modified="2018-12-05" version="1">MVRPVDSFFPLCGSPRFDALVLAVGERFLGVEHYGGMEMEDGHACCGMTLLEVETCVDDGFNFLVFVIAVFYDGLELVLVRLDGKEFRSPSFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0E6</accession>
    <name>A0A392M0E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000806</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000621">
        <property type="protein sequence ID" value="MCH80044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11440" checksum="FDF435642BDB2C14" modified="2018-12-05" version="1">MAKSKKVPKAFRLVWHMVIWIIWKARNNFIFNNVVKEPSDLVEEVKVFASGCLAVVWFGCYGTFWSTCFACSSATVRPLLLSGSCFYLLGGSAPFFATAFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3B5</accession>
    <name>A0A392M3B5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulator of chromosome condensation family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002630</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002844">
        <property type="protein sequence ID" value="MCH81837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3B5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="entry name" value="Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051625">
        <property type="entry name" value="Signaling_Regulatory_Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22872">
        <property type="entry name" value="BTK-BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00415">
        <property type="entry name" value="RCC1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="49"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13189" checksum="75A172ED998A2C37" modified="2018-12-05" version="1" fragment="single">CRGSGEDGQLGIGTNEDKEWVCTVKALPSQRVRSVVAGSRNSLAICHDGKLFTWGWNQRGTLGHPAETKTENIPSQVKALSHVHIVQCGEEPERKDDNGRPLRRDIVIPQPCAPKLAVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3D8</accession>
    <name>A0A392M3D8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4378 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002322</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002413">
        <property type="protein sequence ID" value="MCH81533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3D8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025486">
        <property type="entry name" value="DUF4378"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044257">
        <property type="entry name" value="TRM32-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47071:SF3">
        <property type="entry name" value="DUF4378 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47071">
        <property type="entry name" value="PROTEIN TRM32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14309">
        <property type="entry name" value="DUF4378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4378" evidence="1">
        <location>
            <begin position="199"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="27898" checksum="FB3BAC39D8F43CB6" modified="2018-12-05" version="1" fragment="single">MDSVIHKLPQGQRISDKLKEEILKKLTEPISTREVRYKNSIRRIKSLQEPLVSYCQQQETHSPLKILRPSHQRIFSLPPDLQSFSYASMKEDISDLSQENLVIIDDNDMVIINNVKSGSDLIIDDFEHSSLRNCGNFNDQDIEANKEYKAAIPASTSDSKSQPAPIDRLDNIAQKMEILSKNLNHEILHIDVDTKYKDEFNYVKYVLEISGLTSNESISAWHSKDTPIDPSLYEEMENDPDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M504</accession>
    <name>A0A392M504_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED transcription factor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002951</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003278">
        <property type="protein sequence ID" value="MCH82153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M504"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051358">
        <property type="entry name" value="TF_AMS/ICE1/BHLH6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945:SF17">
        <property type="entry name" value="TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945">
        <property type="entry name" value="TRANSCRIPTION FACTOR SCREAM2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BHLH" evidence="6">
        <location>
            <begin position="125"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="90"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="93"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="106"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="119"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="18034" checksum="EBCF21B72A715B58" modified="2018-12-05" version="1" fragment="single">MDFYQENLAHINNDFELHDFIDDPNFDQFINLIRGEENEDTTICNFNSDLINPSFVDNSFLSFPSNPFDHNINNSVTPFDPTSSLNSFSCFDGETKGERGEENDGDNYSSPTTTTSVDTKPRSKTDRSKTLVSERRRRSRMKDKLYALRSLVPNITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M564</accession>
    <name>A0A392M564_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DDT domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003739">
        <property type="protein sequence ID" value="MCH82476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M564"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053271">
        <property type="entry name" value="DDT_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15546">
        <property type="entry name" value="BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15546:SF2">
        <property type="entry name" value="DDT DOMAIN-CONTAINING PROTEIN DDB_G0282237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8063" checksum="59AA8DA26CAF417B" modified="2018-12-05" version="1">MGGYLLKAVSPRSGDTTVARKSSELQKRSKDLMQNIANDESALRRSTRVRAPPRENPANAFLKYVNKWKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6E2</accession>
    <name>A0A392M6E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003684</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004308">
        <property type="protein sequence ID" value="MCH82871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8705" checksum="77FAE6D847CA019E" modified="2018-12-05" version="1" fragment="single">MSGNRMLVGEIKRCEVQWETGNLAKKPVEVTLEARQVEGSEVGASLEEARKKRDGFIRDYERQSKMVGYREKLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6J3</accession>
    <name>A0A392M6J3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003886</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004610">
        <property type="protein sequence ID" value="MCH83072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6J3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF12">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="12"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="305" mass="34796" checksum="C74CA1F7623008A8" modified="2018-12-05" version="1">MAEEEEDIISTLPDVILCHILSFLQTKQSVATTILSKRWNYLWRSVPSLNLGHTELTDQNAYIRFTHFVNSVLLSRIKNFQLSFTYHDYRILSPHSPMDSVTKWVNFVVQRGVQYIDLYAGIPGLGEMPISILTCSTLVDLKIQNYSVENGSSPVTLPSLKKLHLFRIWFYELRDFMLFLAGCPILENLYTFDVTFFDPKESLTCDEWKTFCLTNLTTADIDCFRSPFPLKAVDNVSSLRLEIDKVNCRNDFIHTFRNLTQLAFVCCKVLNCGCGRRCGCGRGCCECVYCGCCSAQCDCCGVKSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6N7</accession>
    <name>A0A392M6N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004450">
        <property type="protein sequence ID" value="MCH82961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="136"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30061" checksum="7491CA116E972FB1" modified="2018-12-05" version="1">MGLNHGMCDYCREVEETCLHALRNCELAKSIWMSIVPVHARASFFGGDLINWFQYNLQGDLNKINEIHWPEFWVTCCYSLWTWRNKEQHDENFLRPHQPVPIVLQRSREYFNAVQTTKLTTVKPHRTVWVGWKPPGAGWVKINTDRASKETNSAGCGGILRNSKGDWLGGFAKQLGVCNAFMAELWGVLEGLRFAWRLGYRAVELEVDSTAVVKVIRAGVTNSVMGVALLEGIGRLLILDWEVKISNSXREANTCADALALDTLVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M750</accession>
    <name>A0A392M750_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003956</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004716">
        <property type="protein sequence ID" value="MCH83141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M750"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF106">
        <property type="entry name" value="TIR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="252"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="401" mass="45416" checksum="F27BA0B19975E428" modified="2018-12-05" version="1" fragment="single">SVSLKELVNDCVVKWLREAEIILQEVENVTAIMAEPGSMDEPRQLTNDDAMRYRHEMLNKLKQGSGKTKLVKAVAGKAKHLRIFDVVLFVTMTQNPNVRQVQDEIAKSLNMNFDVNTEPERAKKIYSALESMDCPILVILDDVREKIDQGDVGIPYHSNQCKVLLTARSQPKCAAMNCQQDIPLNPLTTEEAWTLFKKHIDIDDFSSTDLLNVACKVAIECEGLPGKIKEMAYNLRNKPINEWNLALDTLRALYDIFLSFTGKDTRDSFTGFLFDALCQKGFKVFMDEVGLKGGDEIASSLIKGIEASRISIVVFSKNFAYSSWCLDELVTILECKKTKNLQILPIFYKIEPFVVRHQKKSYEKAMAKHEKKFGNDSEKVRKWRSALSEVANLSGIHHKSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M772</accession>
    <name>A0A392M772_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004442">
        <property type="protein sequence ID" value="MCH82955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11856" checksum="7EC6FA1C094BE9CF" modified="2018-12-05" version="1">MNEPNKTRDKFKQTRTFKNGGESGCQHENGSTXPNKTRDKFKQTRTFKNGGESGCQHENGSTNQRLVVTKQQANMSFMAKQSESIVGMEATRTITHHRPTTPTSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7S2</accession>
    <name>A0A392M7S2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Anthocyanidin 53-O-glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004020</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004806">
        <property type="protein sequence ID" value="MCH83203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000095">
        <property type="entry name" value="Glycosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050481">
        <property type="entry name" value="UDP-glycosyltransf_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048:SF30">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="425" mass="47384" checksum="040DF236D52CF6AD" modified="2018-12-05" version="1" fragment="single">MVETTTIVMYPSPGIGHIISMVELAKLIHHHNQEQHLSITILLTTGLFDHPSIDSYINRISSSHPSINFHRFPSITVTHSNTQSLAATGFQFIKRNAVNVESKLCQITQTSVIKVFIIDMFCTSAMEIASTMGIPVYYFFTSGAAALALYSYLPKIHSETTLSFKEMVGVEILIPGNSALKAELMPGPVLDREDPAYWEMLYFCEHLSMAKGIVVNTFSELEVVAVKAVQDGVCFPDIKRSPPPVYCIGPLISDPQQSDEARDTEDCLSWLDKQPIRSVVYLCFGSRGSFSVAQLXEIAEGLEMSGHRFLWVVKRPIQGHLEAKQIHDTAGEFELSSVLPSGFLERTKEGPGGVTAGVPMIAWPLHAEQHVNRNVMVEDMKVAVAVEQREGDRFVSGEEVEKRVRELMESERGTEIRERSLKFKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7U7</accession>
    <name>A0A392M7U7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VHS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003428">
        <property type="protein sequence ID" value="MCH82264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7U7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7081" checksum="B781AEED9160A423" modified="2018-12-05" version="1">MRDDGVAQMVGPNGNSPLPDIFQPNFASQTPSSMINNSKKEDNTKAFDFISDHLNSARDSRRVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8S0</accession>
    <name>A0A392M8S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein putative Ty1-copia subclass</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005476">
        <property type="protein sequence ID" value="MCH83609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF455">
        <property type="entry name" value="RLK (RECEPTOR-LIKE PROTEIN KINASE) 8, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="24480" checksum="06CE932070B55506" modified="2018-12-05" version="1">MANQPHLNVIGNKWVFRIKRKPDGSIAHYKARLVDKGFHQRPEIDYKDTFNHVIKPQTIKMVLCIALSKGWNLMQMVNNAFHNGTLNEAVYMSQPSDDIMTYFLVYVDGLLLIATLHQGHIAKRNMLDAKSMCTLMATTSVSFESTIVMQRSTVASLALSTILNRLSQHMQNPTATRMQALKCTLCYLKHTISHGLHVARNTSLTLTAFCDVDWGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M998</accession>
    <name>A0A392M998_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Anaphase-promoting complex subunit 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0004892</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006197">
        <property type="protein sequence ID" value="MCH84062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M998"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031145">
        <property type="term" value="P:anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045842">
        <property type="term" value="P:positive regulation of mitotic metaphase/anaphase transition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007192">
        <property type="entry name" value="APC8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12558">
        <property type="entry name" value="CELL DIVISION CYCLE 16,23,27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12558:SF10">
        <property type="entry name" value="CELL DIVISION CYCLE PROTEIN 23 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04049">
        <property type="entry name" value="ANAPC8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00515">
        <property type="entry name" value="TPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13414">
        <property type="entry name" value="TPR_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-0498">Mitosis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 7" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Cdc23" evidence="9">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="205"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="239"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="7">
        <location>
            <begin position="273"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="421"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH84062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="445" mass="51922" checksum="C507FE667407281D" modified="2018-12-05" version="1" fragment="single">GEKRKEEEMIELDGPLGKSDAVNQELVSLERELSTLRKNGTIDPFCLYLYGLILKQKGNEALARMVLVESVNSYPWNWNAWTELQSLCTTVDILNSLNLSSHWMKDFFLASVYQELRMHNESLSKYEYLLGTFGFSNYIQAQIAKAQYSLREFDQVEAIFEELLRTDPYRVEDMDMYSNVLYAKECFSALSHLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKAVVYFRRALKLNKNYLSAWTLMGHEFVEMKNTPAAVDAYRRAVDVDPRDYRAWYGLGQAYEMMGMPFYALHYFKEAVFLQAKDSRLWIAMAQCYETDQLRMLDEAIKCYRRAANCNDNEAIALHQLAKLYSELGRPEEAAFYYKKDLERMESEERDGPNMVEALSYLAKYYKSTKRFEEAEVYCTRLLDYTGPEREKAKSLLRGMRSTQSSFAPSDGDHFPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9J2</accession>
    <name>A0A392M9J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Long chain acyl-CoA synthetase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004983</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006338">
        <property type="protein sequence ID" value="MCH84152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004467">
        <property type="term" value="F:long-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010143">
        <property type="term" value="P:cutin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010025">
        <property type="term" value="P:wax biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43272:SF98">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16537" checksum="8555DE02F16FFA25" modified="2018-12-05" version="1">MLQGKEKPSSVSPPQTHDICTIMYTSGTSGDPKGVVLTHENVLALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHGDLNALLEDLSELKPTLFAGVPRVFEKVYEGIKKAVAQLNPVRRTVFGMLYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9K8</accession>
    <name>A0A392M9K8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">glycine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0003697</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>tRNA(Gly) + glycine + ATP = glycyl-tRNA(Gly) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010004332">
        <property type="protein sequence ID" value="MCH82884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9K8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015944">
        <property type="entry name" value="Gly-tRNA-synth_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075:SF2">
        <property type="entry name" value="GLYCINE--TRNA LIGASE, CHLOROPLASTIC_MITOCHONDRIAL 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075">
        <property type="entry name" value="GLYCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02092">
        <property type="entry name" value="tRNA_synt_2f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="unsure residue" description="E or Q" evidence="9">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH82884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17751" checksum="63F945B86428196E" modified="2018-12-05" version="1" fragment="single">MSFKNWKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFWFAGVMSGNSSCGLRNTTSAVVQIENAESYSVAMRNAGVNIVVEDRKKKIVEQSNTLAESVNGQILIPKGLLDEVVNLVEAPIPVLGKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA68</accession>
    <name>A0A392MA68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate-tRNA ligase cytoplasmic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004992</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006354">
        <property type="protein sequence ID" value="MCH84161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9974" checksum="5A7DCBBBA1C2F8F1" modified="2018-12-05" version="1" fragment="single">MEAPSKKKKHREAATAATAVSNPSVKEDPHDPLSENYGDIQLNTPVNVNNWTKVEDLNDSFDNKPVGIRGWAQTIRKHGKNVTNLIIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAD3</accession>
    <name>A0A392MAD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">P-loop containing nucleoside triphosphate hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003991</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004761">
        <property type="protein sequence ID" value="MCH83174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000873">
        <property type="entry name" value="p-loop nucleoside triphosphate hydrolase superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045735">
        <property type="entry name" value="Spore_III_AA_AAA+_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20953">
        <property type="entry name" value="KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20953:SF3">
        <property type="entry name" value="P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19568">
        <property type="entry name" value="Spore_III_AA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="104"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="237" mass="25450" checksum="F36FDE377CA543FC" modified="2018-12-05" version="1" fragment="single">MCVSQSEDSLTHVFSATVNTGWLVRVCGNSIEVLKFKLSMLFRNIGVESDAVGDFAVDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAISGSAKLLQDLVQDGSSLLLIGPPGVGKTTIIREIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGSARRMQVPNSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLEMLVGGIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB68</accession>
    <name>A0A392MB68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Metal-dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004296</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005253">
        <property type="protein sequence ID" value="MCH83474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008832">
        <property type="term" value="F:dGTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006203">
        <property type="term" value="P:dGTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.10">
        <property type="entry name" value="Hypothetical protein af1432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050135">
        <property type="entry name" value="dGTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11373">
        <property type="entry name" value="DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11373:SF34">
        <property type="entry name" value="METAL-DEPENDENT PHOSPHOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21744" checksum="37B24139B6064AB9" modified="2018-12-05" version="1" fragment="single">LLHDVGHGPFSHTFERGFLPLVLNGATWSHEEMSEKMIDHIVDEHNIDLDSQLLQKVKEMITSSSDHPPQREKKFLYDXVANGRNGIDVDKFDYIVRDSRACGLGCNFQPERLMETMQVIDDEICYRANDYLTIHKLFATRADLHRTVYTHAKVKAIELMVLDALVKADPYLHIASSIHQPSEFWKVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBM1</accession>
    <name>A0A392MBM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase TOUSLED-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007196">
        <property type="protein sequence ID" value="MCH84671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14709" checksum="7FE0071FFB466FA2" modified="2018-12-05" version="1" fragment="single">RTKTICELLISASKAEREETRLKVRQDSLRLGSVVLIRAGTVLSEDWKDGPVFSDLNAEQTKEIIKTSTQSIAVFNHKKEHLPRSRQHRIKVSGVKSVTASCCRRIVFQILLLVFNRWEEKACEAMIDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC55</accession>
    <name>A0A392MC55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004670</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005846">
        <property type="protein sequence ID" value="MCH83844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6763" checksum="8133C89637B2497C" modified="2018-12-05" version="1" fragment="single">NTTPSPSEAKANSLLETLIWLQGKEELHIELETDLLMLNLIPIIGRRKTIKGEGIRVRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC88</accession>
    <name>A0A392MC88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAR1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005908</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007844">
        <property type="protein sequence ID" value="MCH85066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14851" checksum="6C9F1902FEDB370B" modified="2018-12-05" version="1" fragment="single">MGRPSYTKVDVKHPKDEDKDKDKDKGNGQSTTKPMDVELAVDFRPQFTTTRMFKLRQQMKDWVCGEAKKLGFSAVVSKSDNGGKGRKPYVVMRCQRGGTHKAYVNKKWELTTSLKCDCPFKIRSYYLSCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCM0</accession>
    <name>A0A392MCM0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL5c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">50S ribosomal protein L5, chloroplastic</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0006111</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008186">
        <property type="protein sequence ID" value="MCH85267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1440.10:FF:000001">
        <property type="entry name" value="50S ribosomal protein L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_B">
        <property type="entry name" value="Ribosomal_uL5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_uL5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020930">
        <property type="entry name" value="Ribosomal_uL5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_uL5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020929">
        <property type="entry name" value="Ribosomal_uL5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_uL5_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF000585">
        <property type="entry name" value="PRK00010.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00358">
        <property type="entry name" value="RIBOSOMAL_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 6 9" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL5 N-terminal" evidence="7">
        <location>
            <begin position="10"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="Large ribosomal subunit protein uL5 C-terminal" evidence="8">
        <location>
            <begin position="67"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00035391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH85267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="21020" checksum="A1B534817808DA33" modified="2018-12-05" version="1">MVDNVFPSFQVPKVDKIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLSISSFDGNGNFNIGIKDQTVFPELKSGFGTPRGMDVCISTTAKTDQEGQKLLALMGMPFREGVENTQIVRKKKLKSHHFDAKSKGRGDRARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCQ7</accession>
    <name>A0A392MCQ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Early nodulin-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0005923</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the early nodulin-like (ENODL) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007874">
        <property type="protein sequence ID" value="MCH85081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11019">
        <property type="entry name" value="OsENODL1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.420:FF:000066">
        <property type="entry name" value="Early nodulin-like protein 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041846">
        <property type="entry name" value="ENL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039391">
        <property type="entry name" value="Phytocyanin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003245">
        <property type="entry name" value="Phytocyanin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021">
        <property type="entry name" value="BLUE COPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021:SF205">
        <property type="entry name" value="PLASTOCYANIN-LIKE DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02298">
        <property type="entry name" value="Cu_bind_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51485">
        <property type="entry name" value="PHYTOCYANIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0732">Signal</keyword>
    <keyword evidence="11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017282654" evidence="12">
        <location>
            <begin position="30"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Phytocyanin" evidence="13">
        <location>
            <begin position="30"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="136"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="10">
        <location>
            <begin position="171"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00035011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH85081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="23711" checksum="1579B1CEE24071EC" modified="2018-12-05" version="1">MATFILRSNKLVHALGWFCVMLMIHKSAAYDFIVGGQKGWSVPGDSNSSPFNQWADKSRFQIGDSLVFNYQSGKDSVLYVKSEDYASCNTGSPXAKFSDGHTVFKLNQSGPHFFISGNKDNCLKNEKLTVIVLSDRSNSNTNQTSNASPPSPQSSSSSPPSPAPSKQEGQSPPPDTNQTPPPTTASDRXHPPHNGAASVFVSLAGSIGTFMVSVLILSKYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDA6</accession>
    <name>A0A392MDA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007894">
        <property type="protein sequence ID" value="MCH85095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6388" checksum="D41AA15F0055C07B" modified="2018-12-05" version="1">MVVITNPNNRNWSSSPVQIVSVVVVIVSVVVGDVVHLSRQAAIRSDRSLMAAVKAIFVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDG1</accession>
    <name>A0A392MDG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Activating signal cointegrator 1 complex subunit 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0006175</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008298">
        <property type="protein sequence ID" value="MCH85331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000024">
        <property type="entry name" value="U5 small nuclear ribonucleoprotein helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3380.10">
        <property type="entry name" value="Sec63 N-terminal domain-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050474">
        <property type="entry name" value="Hel308_SKI2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004179">
        <property type="entry name" value="Sec63-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057842">
        <property type="entry name" value="WH_MER3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961:SF13">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961">
        <property type="entry name" value="DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02889">
        <property type="entry name" value="Sec63"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23445">
        <property type="entry name" value="WHD_SNRNP200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MER3 helicase-like winged helix" evidence="6">
        <location>
            <begin position="45"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="SEC63" evidence="5">
        <location>
            <begin position="136"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19224" checksum="FD4C9A41F28A03EC" modified="2018-12-05" version="1" fragment="single">MLDVMQIFGRAGRPQFDKSGEGIIITXHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDH5</accession>
    <name>A0A392MDH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mitochondrial-like Rho GTPase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006366</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008653">
        <property type="protein sequence ID" value="MCH85520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052266">
        <property type="entry name" value="Miro-EF-hand_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46819">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46819:SF1">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14816" checksum="208A3A158608FBEA" modified="2018-12-05" version="1" fragment="single">SDEYSWRKSRDLLEKVAGQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKATQELGIEAPIHVSMKLGDSSNVYNKIVSAAEHPHLSIPETEIGKKRKQYNRLVQNSLIFASVGTAMAVVGLAACRAYAVRKNSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEZ5</accession>
    <name>A0A392MEZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009059">
        <property type="protein sequence ID" value="MCH85743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="18132" checksum="6DFDB7216743EA58" modified="2018-12-05" version="1" fragment="single">EELEEGGVGAENENVGAEEVLGAGDENLVAQGDVGAEDENVVGLGAGDENVVAQGGXXXXXXXXXXXXXXXXXXVAQGGVGAEDENVVGLGAGDENVVGLRAEEIDDNIKKFDGDFQLDSIQFSGSPVRNAAAAVETYNTANMGGEIDAAVNRGPKNKKRVNQTAEETSIGKKSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG64</accession>
    <name>A0A392MG64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Multiple C2 and transmembrane domain-containing protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0007347</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MCTP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010396">
        <property type="protein sequence ID" value="MCH86490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd08379">
        <property type="entry name" value="C2D_MCTP_PRT_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.150:FF:000090">
        <property type="entry name" value="C2 domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047255">
        <property type="entry name" value="C2D_MCTP_PRT_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013583">
        <property type="entry name" value="MCTP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047259">
        <property type="entry name" value="QUIRKY-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425:SF46">
        <property type="entry name" value="CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425">
        <property type="entry name" value="PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08372">
        <property type="entry name" value="PRT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 8 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="342"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="484"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="domain" description="C2" evidence="9">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="C2" evidence="9">
        <location>
            <begin position="110"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH86490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="544" mass="62688" checksum="7BB964A2F6A17565" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGV0</accession>
    <name>A0A392MGV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0007180</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RETICULATA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010141">
        <property type="protein sequence ID" value="MCH86325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009706">
        <property type="term" value="C:chloroplast inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099402">
        <property type="term" value="P:plant organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021825">
        <property type="entry name" value="RETICULATA-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31038">
        <property type="entry name" value="EXPRESSED PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31038:SF2">
        <property type="entry name" value="PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11891">
        <property type="entry name" value="RETICULATA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="9">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH86325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="284" mass="31840" checksum="BB04191292686834" modified="2018-12-05" version="1" fragment="single">GGDIGKIISFGGGDGGDDDGDDDDYFDDFDDGEEGDEGGLFRRRILLQELFDRKFVDAVLSEWQRTIMDLPAGFRQAYEMVQYFSAMNARPTANRLISRKLPQGLSRSFIGRMLADPAFMYRFLLEEVATIGCSVWWEFKNRKDRIKQEWDLALINVLTAAACNAVVVWSLAPSRSYGNTFQFDLQNTLQKLPNNIFEMSYPLREFDLQKRIQCFLFKAAELCMVGLGAGAVQGALSNTLAKKKEGRLSVTVPSVSSNALGYGAFLGIYANLRYQLLCGFDRGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHH7</accession>
    <name>A0A392MHH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NBS-LRR disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010411">
        <property type="protein sequence ID" value="MCH86499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF18">
        <property type="entry name" value="RX N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="1">
        <location>
            <begin position="171"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="519" mass="59031" checksum="788DB40BB7146172" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHM5</accession>
    <name>A0A392MHM5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011315">
        <property type="protein sequence ID" value="MCH86987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10762" checksum="3040D448AC70962A" modified="2018-12-05" version="1" fragment="single">GKLNKGADALSRIHDVAELTVLHSTAQWAHVDEIKEEVSKDEKLQKIITELQLDPLSWPGYTYRQGVLFYEDRMVISKTSKMIPIILEEFHATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ47</accession>
    <name>A0A392MJ47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007970</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011540">
        <property type="protein sequence ID" value="MCH87105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16985" checksum="F241972BFF6624F0" modified="2018-12-05" version="1" fragment="single">LAMHGVESSAHVPIIGPRIRPSFEDDFLRISVTPDSGAYYCMGCVKHVFHMVLRYKVKVHVSDGTDDAENVSFCPPEMSLLKGKKLVFKVEKCSEASSIFDGSFRVRRWRLLHDDPGIWRDILKARYGSLTPAPHFGGHPGGLRNVSTCWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK38</accession>
    <name>A0A392MK38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012209">
        <property type="protein sequence ID" value="MCH87445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="27611" checksum="2B795ED007A2C6ED" modified="2018-12-05" version="1" fragment="single">ALPLAPPSSSKRKSVASNPVTTPDDVVAKXTRRSSRGSAKPSTARTLEIEVTKRETRTKASHDRVKTSSKDVSPSNTSNPNKVVQPSKTVASESTKSPITNDQTFSGHKEVTKVTSFEHLVTPSGHSNAACATSDNSLQEDINSRMDVIPEQAETHVSNKSLHDQQSASLAPSNSFLDMTHNPSESVLRLPYISCDVVDSLIREIKELSVKDPLTFPTSEFESSSVLSEKLEQNKPVFASERFQVLKTFFDCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK71</accession>
    <name>A0A392MK71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012292">
        <property type="protein sequence ID" value="MCH87485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9787" checksum="E4F9BB3266629985" modified="2018-12-05" version="1">MITSEIEPLYRLTTDQNHSQTDKGLVKEHDDHKGKENKVVTALSQQFSLSRPCGTCHGRDRGFRTSFSQPQCLSRPCELCHGRDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKB3</accession>
    <name>A0A392MKB3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAR1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012943">
        <property type="protein sequence ID" value="MCH87801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKB3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="23933" checksum="53E5E2222EEAE852" modified="2018-12-05" version="1">MASVMIRLDMEYTSDKGRKSVRRESVEADAVKKRARNSSVGESTEIFQINRMPNFMHPYIDAITDVKGDEALLPSKRKTMRHGVALMEKWFTFPDMGHVTASILDRVVVNMTKHGDCVTFFPLCGSPPEDPTSHIVCLGSIPGHYFYVKLKDGCSIPPTCPQWRNHCSPEAAAWESYFLDHHTKFHELMKAETGDKKTNITSGFKIDDPVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKB5</accession>
    <name>A0A392MKB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag/pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008823</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013197">
        <property type="protein sequence ID" value="MCH87942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09279">
        <property type="entry name" value="RNase_HI_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="353"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="523" mass="58905" checksum="E0327CFDE649D76B" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLB0</accession>
    <name>A0A392MLB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Putative retroelement pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0008647</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012869">
        <property type="protein sequence ID" value="MCH87769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="9">
        <location>
            <begin position="118"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="10">
        <location>
            <begin position="251"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH87769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="439" mass="49456" checksum="FA22D98019A79147" modified="2018-12-05" version="1" fragment="single">HKGAELCFLAITNVDYPFMVPTCHVLQALDSPVALPTNFEQLLDQYADIFAEPTALPPSRPGFDHKIPLKDGVQPFNLRPYRFSLIQKDVIDKIVQDMLDQGIVQHSTSPFASPTILVRKKDGSWRLCVDFRRLNDLTIKDRFPIPLIEDLMDELHGSVIFSKLDLRSGYHQLRMAPGEAHKTAFKTHSGHFEYLVMPFGLTNAPTSFQALMNQQLRGFLGLAGYYRRFVKDFGKLAKPLTDLLRKDNFIWSAEATHAFVTLKQALVSAPVLSLPDFSKRFVVETDASGKGIGAVLMQEHHPIAYISKSLGPKQQAMSVYERELLAIVYAVQKWGSYLSHAPFTIKTDQKSIKHMLDQKLNTPFQQVWVAKLLGFDFDIQYKEGSSNVAADALSRKVGAELLALMLSNASNDLWDSINLAWQQDPYLQAIIHAVQQNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLD2</accession>
    <name>A0A392MLD2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">BI1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008786</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the BI1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013124">
        <property type="protein sequence ID" value="MCH87905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLD2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006214">
        <property type="entry name" value="Bax_inhibitor_1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23291">
        <property type="entry name" value="BAX INHIBITOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23291:SF84">
        <property type="entry name" value="INHIBITOR OF APOPTOSIS-PROMOTING BAX1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22812" checksum="E9E1F0CB1BD8CA71" modified="2018-12-05" version="1">MSRKINSESLEGVHENLERSLCPTKLENLERSVCPTTMLENPQLRWSFIRKVYSIITFQFFLITVAVSIGVFLRSVSNFFIKTTQGFVLYVVLIFVPFLAMYPLYYYYDRKHPLSYLLLLIFNVSSAIPVGLTCAFVSEYVNFDGFLVLSQRLFFAIAASPLSNTRFCLSYAQAIVAYWLLLCFIDVLLMLLDLVQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MND5</accession>
    <name>A0A392MND5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015344">
        <property type="protein sequence ID" value="MCH89046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MND5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5108" checksum="8A8A512A128AC00E" modified="2018-12-05" version="1" fragment="single">EESLDSAEDLLRSYLITGWRCVQVASFRFSLLWPAFSALGSVSVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNF9</accession>
    <name>A0A392MNF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Importin-5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0009634</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014751">
        <property type="protein sequence ID" value="MCH88743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000357">
        <property type="entry name" value="HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021133">
        <property type="entry name" value="HEAT_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040122">
        <property type="entry name" value="Importin_beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10527">
        <property type="entry name" value="IMPORTIN BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02985">
        <property type="entry name" value="HEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50077">
        <property type="entry name" value="HEAT_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="HEAT" evidence="6">
        <location>
            <begin position="24"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH88743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="17781" checksum="26154AE94DF57C50" modified="2018-12-05" version="1" fragment="single">IAICIFDDVAEQCCEAAIKYYDTYLPFLLEACNDETPDVRQAAVYGLGVCAEYGGSVFKTLVGEALSRLNAVIQHPNALHSDNIMAYDNAVSALGKICQFHRDSIDSAQVIPAWLNCLPIKGDLIEAKVVHDQLCSMAERSDRELLGPNNQYLPKIVSVFAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNN3</accession>
    <name>A0A392MNN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin and armadillo repeat-containing protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014412">
        <property type="protein sequence ID" value="MCH88569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46168:SF8">
        <property type="entry name" value="ARMADILLO REPEAT ONLY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46168">
        <property type="entry name" value="ARMADILLO REPEAT ONLY 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="402" mass="44891" checksum="F61D0D2653324F29" modified="2018-12-05" version="1">MKVQIVVAWAISELAAHHPKCQDHFAQNNAIRLLVSHLAFETIQEHSKYAITNKQNMSSIHSLVMASNNNNNDSGKGVQEDDYKIINHPGTNQTSNQMHNVINNTIAMKGNNKKDTKEDSINNAIVKQNNNNNNNHVSIAGTSIKGREFEDPRTKAQMKAMSARALWQLCRKNITICHTITESRALLCFAVLLEKGTDDVQHYSAMALMEITAVAAEHPELRRSAFKPTSPAAKAVVEQFLKVIEKGDSDDLLIPCVKAVGNLARTFRATETRFIAPLVRLLDEREPVISMEAAVSLIKFAESDNYLHETHCNAIIAAGGAKHLIQLVYFGEQMVQIPSLLLLCYIALHVPKNETLGQEEVLIVLEWCTKQAHLISEPRIEPILPEAKSRLELYQSRGRGFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNQ8</accession>
    <name>A0A392MNQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008795</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013145">
        <property type="protein sequence ID" value="MCH87914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9277" checksum="364274CBEA5220B4" modified="2018-12-05" version="1">MGVNDFIVCINETGMYXRLTFPSTMLIQNTNDIGKILFKRSSGSTVISGLSFSTLITTYAPMAEMIKWTQDTDRGNLKSNFCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPH0</accession>
    <name>A0A392MPH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoglucan phosphatase DSP4 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015229">
        <property type="protein sequence ID" value="MCH88985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019203">
        <property type="term" value="F:carbohydrate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001070">
        <property type="term" value="F:starch binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005983">
        <property type="term" value="P:starch catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052832">
        <property type="entry name" value="Starch-Glucan_Phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46642">
        <property type="entry name" value="DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46642:SF3">
        <property type="entry name" value="PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyrosine specific protein phosphatases" evidence="1">
        <location>
            <begin position="34"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7578" checksum="A5F024CA4FA91E65" modified="2018-12-05" version="1" fragment="single">MDFCVRLVCNVTLHTQFQIAYCPDGDFDSFDLRKRLPAVISKLYKAIKSNGGVTYIHCTAGLGRAPAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQB6</accession>
    <name>A0A392MQB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015833">
        <property type="protein sequence ID" value="MCH89285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3849" checksum="96C7E228CC6EED25" modified="2018-12-05" version="1" fragment="single">MWVETDTCDILPPPLRRAPGRPKRSRNKDADEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQL1</accession>
    <name>A0A392MQL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010748</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017035">
        <property type="protein sequence ID" value="MCH89846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF202">
        <property type="entry name" value="SENESCENCE-INDUCED RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Malectin-like" evidence="6">
        <location>
            <begin position="2"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="26651" checksum="52828D2805991FF1" modified="2018-12-05" version="1" fragment="single">MYRYKDDIYDRIWLPYESSDWRQLSTSLNNDELDKNDYKVPAIVLRTAVTPVNASAPLQFNLDADSINDKYYLYMHFNEVEKLAGNETRSFNIALNGHFWFGPMIPIYQKAKVIFTSTSMTGYKRYLFSFSKTENTTFPPIINAIEVYKVKDFSQSETQQDDVDAVTIIKNAYGVARNWQGDPCAPAKYMWEGLNCSFDGLNPPRITSLNLSSSGLTGQIHYSLSKLTMLQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQY7</accession>
    <name>A0A392MQY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010603</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016698">
        <property type="protein sequence ID" value="MCH89703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000090">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF436">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE ISOFORM X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="5"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="107"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="326" mass="35890" checksum="686BCD66765818DC" modified="2018-12-05" version="1">MPERNVVSWSAMMAAYCRVSEFKEVLALFVEMQNKGVKPXXXXXXXXXXXXXXXXXXXXGMWVHSYAKRFERVSSNPILATALVDMYSKCGCVESALAVFDGISNKDVGAWNAMISGVALNGDARKSLELFQQMIVCGKNPNETTFVAVLTACTHAKMVREGLRLFEEMSGTYGVEPCAEHYACVVDLLSRAGMVEEAERFIEEKMGGFAAVDANVWGAILNACXXXXXXXXXXXXXXXLIDMGVADCGTHVLTYNIYRDAGWDAEANRVRSMISEAGMKKKPGCSIIEVGNEVEEFLAGDQSHPQAQEMCRLLDSILKMANLEHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRM0</accession>
    <name>A0A392MRM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ferredoxin--NADP root isozyme chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010796</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017134">
        <property type="protein sequence ID" value="MCH89892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015701">
        <property type="entry name" value="FNR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43314">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="Riboflavin synthase domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17810" checksum="0EF3468C2439782D" modified="2018-12-05" version="1" fragment="single">KYRFYENDAAVLAYVWYHSEYVSITVIHRDFPKATLCNFCRITATNLNVWDKSWAPVFTLDMKAKNCGLRRNHNVICMSVQQASVPKVNVSPLELENATEPPLNLHKPKEPYTATIVSVERLVGPKAPGETCHIVINHDGNVPYWEGQSYGVIPPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTF6</accession>
    <name>A0A392MTF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017243">
        <property type="protein sequence ID" value="MCH89938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11291" checksum="7839C44F1146B7C1" modified="2018-12-05" version="1">MFFWCGSPPARYSERVRHLFATCSLIGFWLCVCSLPVRYSERVRQMFARCSPTARQLRFCVCLRSLPVRYLFATYSLPVRYSEQLCDRIILLMFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUQ1</accession>
    <name>A0A392MUQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Chloroplastic group IIA intron splicing facilitator CRS1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0012196</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020059">
        <property type="protein sequence ID" value="MCH91270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000373">
        <property type="term" value="P:Group II intron splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045278">
        <property type="entry name" value="CRS1/CFM2/CFM3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001890">
        <property type="entry name" value="RNA-binding_CRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035920">
        <property type="entry name" value="YhbY-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31846">
        <property type="entry name" value="CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31846:SF4">
        <property type="entry name" value="CRS1 _ YHBY (CRM) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75471">
        <property type="entry name" value="YhbY-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51295">
        <property type="entry name" value="CRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="4" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="8" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="3" id="KW-0934">Plastid</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="CRM" evidence="11">
        <location>
            <begin position="147"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH91270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20698" checksum="E4D3DDEF7F05730C" modified="2018-12-05" version="1" fragment="single">MSQTLTGGTLLLRNKFYIVIYRGKDFVPTTVAAVLAERQELTKQVQDVEETVRCKAVVATPXXXXXXXAPAGSLAEFYEAQARWGRDVSTEEQERMIEEATKAKNVKLVKQIEHKLSLAGTKKLRAEKLLAKIESSMVPAGPDYDQEIITDEERVVFRRIGLRMKPYLPLGIRGVFDGVIENMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVP8</accession>
    <name>A0A392MVP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020787">
        <property type="protein sequence ID" value="MCH91610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="215"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="215"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="353" mass="40186" checksum="3250E269B0AC632C" modified="2018-12-05" version="1" fragment="single">THNTEVTKIQQRDVTNVENMDTKSECFKLYGYSQKVNSPNNKKKNLTKNMVKPKATRSCMIAQATPTGSKEDWYFHIGFFKRMTGVKKHPTKVKSHSNSYDISGDGRKSRIKDIDKLASPGLPCLDDVLLVEGLTTNLISISQLCDQVLKVHFNNSECIITKGQEVQMKGSKTRNKCYLWILHNKRQPGLSVKEDNAKMSHKMVQHLCSSKEIESAQTNKEKGTLDIKGSRSPRVYESNIDQQDVIQDVRTSSAQEDPNIPMEESHEDLGTQDSEIDVELHVQDIVTPGKEMVAGKMISENIPLAPMDNVSFHSAESVQKWKYVYQRRIAHERELSQEALNCKEVMKFWKLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX45</accession>
    <name>A0A392MX45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011757</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019157">
        <property type="protein sequence ID" value="MCH90834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF18">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="75"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="16"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="44"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="399" mass="44431" checksum="80662A42E4272EF4" modified="2018-12-05" version="1" fragment="single">VDDYTTEFYELLARTETAESPFVEAHQRALQAERQLARRGNPTPAASANSSTHAPGRREPHPTVSQQPRPTGGTRCFKCGQLGHCLADCRNVAKNNLRGLLANELDVDSPPIFDTEAEAVDGDVDHEFVEGKVCSLIIDSGSCENVLSELVVMKLGLTTEKHPKPYKLAWLNKHTGITVSHRVLLSFSIGPTYSDEIFCDVVPMDACHLLLGRPWQFDRSVIHDGRANTYSFLFRGKKIVLLPSKNHTIGDSLTLLSRGPFEEAMAETRLVFVLFSKPVNVDAMPPIATSSAVTTLLAEFSDIFPETLPDELPPLRDIQHQIDLASGASLPNRPHYRMSPKEHEEVRRQVEELLIKGHIRESLSPCAIPALLTPKKDGIWRMCVDSRAINKITVRYRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXB8</accession>
    <name>A0A392MXB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative aarF domain-containing protein kinase chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012884</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. ADCK protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021531">
        <property type="protein sequence ID" value="MCH91952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046467">
        <property type="term" value="P:membrane lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901031">
        <property type="term" value="P:regulation of response to reactive oxygen species"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050154">
        <property type="entry name" value="UbiB_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10566">
        <property type="entry name" value="CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10566:SF115">
        <property type="entry name" value="PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 8, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ABC1 atypical kinase-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4253" checksum="3FCF5F6A4974BBF5" modified="2018-12-05" version="1" fragment="single">DQVPPFPSETALAIVEEELGASVGDIFDQFDYEPIAAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXR1</accession>
    <name>A0A392MXR1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">phenylalanine ammonia-lyase</fullName>
            <ecNumber evidence="5">4.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0012906</name>
        <name evidence="10" type="ORF">A2U01_0013238</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">10/8</strain>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-phenylalanine = (E)-cinnamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21384"/>
            <dbReference type="ChEBI" id="CHEBI:15669"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="EC" id="4.3.1.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PAL/histidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.24" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010021578">
        <property type="protein sequence ID" value="MCH91974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010022399">
        <property type="protein sequence ID" value="MCH92301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045548">
        <property type="term" value="F:phenylalanine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006559">
        <property type="term" value="P:L-phenylalanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="entry name" value="Fumarase/aspartase (N-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001106">
        <property type="entry name" value="Aromatic_Lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10362">
        <property type="entry name" value="HISTIDINE AMMONIA-LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00221">
        <property type="entry name" value="Lyase_aromatic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="L-aspartase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0585">Phenylalanine catabolism</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH91974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH92301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="13736" checksum="075C4C08513B0E76" modified="2018-12-05" version="1">MEGITNGHAEATFCVTKSVGDPLNWGAAAESLTGSHLDEVKRMVEEYRNPLVKIGGETLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYC0</accession>
    <name>A0A392MYC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myosin-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012617</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020957">
        <property type="protein sequence ID" value="MCH91688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35468">
        <property type="entry name" value="MYOSIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35468:SF1">
        <property type="entry name" value="MYOSIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="139"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="146"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20411" checksum="BA88C3FF12FEDCDD" modified="2018-12-05" version="1" fragment="single">EKLSSEGNLCSGHCKTIVRRIVEQVRVETEQWSQMQKMLGQVREEMEELQASRDFWEDRALHSDSQIQSLHNSVQEWKQRALSSESKKEELEAKLSVVYGDLEKLRNEQNAVKGTKCSSNALDTQNEFEKHIVVFSSKENSSNVTENRKRSEVLRNGERKTHAASARGGLLVPKRPPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZY7</accession>
    <name>A0A392MZY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013839</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023718">
        <property type="protein sequence ID" value="MCH92893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF34">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="37887" checksum="CD2D87E26255A9AF" modified="2018-12-05" version="1" fragment="single">MSSSTSETENIITSQTDKLIVLXAGSQLSIKLDGENYPAWRIQFSALLTGFDLFGYVDGSKTCPTATVVAGATTTANPAFSHWTRQDQLILHGIVSSVTATVVTHLGTVKTSQQAWDILKTMYVGRSRVRVMALKQRISTFTKGTQSMAVFLQGIKAISDELSIIDNPLDNTDLVIHTLNGLSSEYKEISAALRSRETPIEFAELHEKLMDFETLMQRDNSSPPEPTVVTANTANRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKICYKIKGYPNRNQMRRSANVAAYRHQNPVHNNNWIMDTGASHHITQDLQQLTLAQPYPGSDQVLVGDGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0L4</accession>
    <name>A0A392N0L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein gar2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0014239</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024597">
        <property type="protein sequence ID" value="MCH93291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="19"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="95"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="19"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH93291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="28302" checksum="62342A4D9E80AEA9" modified="2018-12-05" version="1" fragment="single">EAFELLKETEPEAALNLLMNSKSSSERTQSASATSESEIHSAVDHDLLMAKFTKEFITEDIFEKLDGNPSXIYPLKDFLAKLQTPRTSSNIICLIAQLESQLEQYAKDLQQRKNNAARLDVQTKAQAIMFEKAQSSHARVADLKAKSVEVNAEIQACQDNIDAWNRQIEELNSKIRLEESKKNDLANAAERARQVEVDKEAKKGIQYFASSEALEADIKALTESNNILDTKLVYIKGLYNKLKSNLQTHRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1C7</accession>
    <name>A0A392N1C7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025169">
        <property type="protein sequence ID" value="MCH93531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26410" checksum="B8AA6120BCFDB902" modified="2018-12-05" version="1">MMNSTNKGNTTLTDTDEAKPSIQNLNNPIAANMHFEIKKIGILFDCDFYIPDEGDHTGIAFRLAYYKVTSAKWSLSNRALCVYVGSMLCSVVPGFRTSVEKSLNEIGIRPRFVSLPSQAKENKVEITYASQLDWSSILVIFGYCILILFNHDDFKNDAVGYKNYISNCIVGLKAKFRWDPSNQLNIPFDSTKVNIISTMLGSDDLRATVKKFLMSNSNHSDSQVGNVCKYLSDVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N330</accession>
    <name>A0A392N330_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015177</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026812">
        <property type="protein sequence ID" value="MCH94220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N330"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="19516" checksum="9B3364EBF932AE11" modified="2018-12-05" version="1">MVNPSKKDWSKLLDDALWAYRTAFKTPLGMSPFRLVFGKACHLPIELQCKVFWATKKLNFDSKASGRARLLQLSELEEHRMFSYKNDELYKEKTKAWHDKKIQKRDLVEGQQVLLYNSKLKLFPGKLKSIWSGPFKLLKIYAYGVVDLLDEGTGQEFKVNGQRVKHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4K5</accession>
    <name>A0A392N4K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015064</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026532">
        <property type="protein sequence ID" value="MCH94109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37743">
        <property type="entry name" value="ARM REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37743:SF1">
        <property type="entry name" value="ARM REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="20820" checksum="A5C844FA43093065" modified="2018-12-05" version="1" fragment="single">VLIPVIRSKLDLAVDSKNVLKIKACLFSICTTLVVRGWESLSHPLMHAIKRMVETVLLWPCLNADSVSKVQHGCIDCLALMICVELQAEESITDSMPDRIRAIGKKVARDSVVTYVMNQFFNDKKEHTSNPEFGEENCESVAAVPLSFRLCMGNVLISTCQKISESXKKHFAGLLLPFLLHSLKVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6L7</accession>
    <name>A0A392N6L7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">U-box domain-containing protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0015090</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026587">
        <property type="protein sequence ID" value="MCH94134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6L7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000491">
        <property type="entry name" value="RING-type E3 ubiquitin transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058678">
        <property type="entry name" value="ARM_PUB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315">
        <property type="entry name" value="U BOX DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315:SF224">
        <property type="entry name" value="U-BOX DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25598">
        <property type="entry name" value="ARM_PUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="U-box" evidence="4">
        <location>
            <begin position="5"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="repeat" description="ARM" evidence="3">
        <location>
            <begin position="47"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="22444" checksum="F5C0E0A0E71ABE7B" modified="2018-12-05" version="1">MAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVNLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNCKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8Q1</accession>
    <name>A0A392N8Q1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030012">
        <property type="protein sequence ID" value="MCH95515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11447" checksum="243EA285D558E02C" modified="2018-12-05" version="1">MGCLLVQAGKHMEWLTXGECKASMHDVVVSKETLHAIKLAQEQNRCLWRVLSTLFGHIASNAILQPLGHFANSPLARKYPPIRADDYVRQEVEAVIDVKGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9Q9</accession>
    <name>A0A392N9Q9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">p21-activated protein kinase-interacting protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032124">
        <property type="protein sequence ID" value="MCH96353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9Q9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051959">
        <property type="entry name" value="PAK1-Kinase_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44675:SF1">
        <property type="entry name" value="P21-ACTIVATED PROTEIN KINASE-INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44675">
        <property type="entry name" value="PAK1 INTERACTING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="22946" checksum="E0F78D0DBEDC7BA4" modified="2018-12-05" version="1" fragment="single">SYERFIWGFNLNPNKQTLTPFFSYPSHLSLIKSVAVSGSVVASGGSDDTIHLYNLSAASSLGSLNHHSSTVTALSFYSPPHLSFPRNLVSADADGSVAIFDADGFVHLKTLSVHRKAINDLALHPSGKLALTVSRDNCFAMVNLVRGRRSFCCRLDKEASLVRFDASGDSFFMAVDETVCVHQAEDARLLFELQCPKRVLCAASARVCAFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB62</accession>
    <name>A0A392NB62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032367">
        <property type="protein sequence ID" value="MCH96459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10788" checksum="2FF34C972BD4B84D" modified="2018-12-05" version="1" fragment="single">MSILVNGSPTTDFKVEKGLRQGDPLSPFLFLIVVEGLTQLVNRAVELELYRSFKVSNNLQFSILQFVDYTILVGEDSWENLWCIKAILCSFELVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCR7</accession>
    <name>A0A392NCR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative tetraacyldisaccharide 4'-kinase mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017828</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033397">
        <property type="protein sequence ID" value="MCH96838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6701" checksum="CC1F7907D82BDF2C" modified="2018-12-05" version="1" fragment="single">MGYGGGDEVNMLQRHLLGTPTKIGVGPNRAAVASHLINKYGYIDIRKSPLYEKQNLDWKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCT6</accession>
    <name>A0A392NCT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Histone-lysine N-methyltransferase family member SUVH9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0018507</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Chromosome</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035141">
        <property type="protein sequence ID" value="MCH97512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042054">
        <property type="term" value="F:histone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002039">
        <property type="term" value="F:p53 binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016279">
        <property type="term" value="F:protein-lysine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.270.10">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043550">
        <property type="entry name" value="EHMT1/EHMT2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007728">
        <property type="entry name" value="Pre-SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001214">
        <property type="entry name" value="SET_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046341">
        <property type="entry name" value="SET_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46307">
        <property type="entry name" value="G9A, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46307:SF4">
        <property type="entry name" value="G9A, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05033">
        <property type="entry name" value="Pre-SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00856">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00317">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82199">
        <property type="entry name" value="SET domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50867">
        <property type="entry name" value="PRE_SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50280">
        <property type="entry name" value="SET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pre-SET" evidence="4">
        <location>
            <begin position="16"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="SET" evidence="3">
        <location>
            <begin position="77"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH97512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="237" mass="26793" checksum="D59978E6D467BED3" modified="2018-12-05" version="1" fragment="single">KATFPQFVFHQSGKTTGCECVDGCAEECFCFMKNGNEFPYSQSGLLLKGRPLLFECGPFCHCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQIFTMNGDSLIYPSRFAESWAEWGNLSLIDANYKRPSYPSIPPLDFAMDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHLMLFAMENIPPLREFSLDYGVAGVADEELTGKLAICM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDT1</accession>
    <name>A0A392NDT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Feronia receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0018989</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036412">
        <property type="protein sequence ID" value="MCH97990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.430:FF:000007">
        <property type="entry name" value="FERONIA receptor-like kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.430">
        <property type="entry name" value="Galactose-binding lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045272">
        <property type="entry name" value="ANXUR1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34590">
        <property type="entry name" value="OS03G0124300 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34590:SF15">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="Malectin-like" evidence="12">
        <location>
            <begin position="25"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH97990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="282" mass="32126" checksum="C309FE8F34854219" modified="2018-12-05" version="1" fragment="single">MPSFLYYTNFTDDLNYHLKSLDTADNPDYQIQNNKALEMLYRVNVGQNQVPPNQDTGMFRNWDNDFPLYLKKQYPQSISSGFGEHLNYLRNTVPNYTAPEVVYLTSRNYGKDAKEDYNVTWSFEVDSTFTYMVRLHFCEFNEDIKGQGYRVFQIFIDDILAENAADVFSWSGGLLVPVHKDYAVTMYSPKGSSQIERVNISIKLQRMPDHSTLTTAYHDVLLNGIEIFKISDNNNNLAGVNPKYFSPNEPLSPNPQSNSKNSTIIIFIAVGVSCLLLASVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF93</accession>
    <name>A0A392NF93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">T-complex protein 1 subunit gamma-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037520">
        <property type="protein sequence ID" value="MCH98412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15298" checksum="362ECB7E6B467625" modified="2018-12-05" version="1" fragment="single">MPLNLFLSVTTTKHFAAIPPASVYSFSSLQTSRQLFDEKPQWNNSVWVPISTVSAAILFQISKPTNAYVQGTMLGLINGGIGDKFTSELGTLFAELAIDITMVGVAIGQSLQEVAYAVYFRDGEHFQKGYVLIICPPHDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHA2</accession>
    <name>A0A392NHA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038714">
        <property type="protein sequence ID" value="MCH98861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="23253" checksum="D6F32FB149A4D775" modified="2018-12-05" version="1" fragment="single">VKVWPRKDKLSSTKLTAKYALLNKIVVVNWVPTTHSYDVATGLSKFIYAIGTRTKFDFGSYIFDQTIMHAHSLAVKMPIAFPTLLCGIILKQYPGILVNTNVPCKRKSTLSLDYRLFEGTHAADIATSSVKKPTAALTRKQMITNLKDVSKALGEKKFKVDRVIQALELEENPEAVDAEQEEEEDDAAANSDVCDEDEQVEDSDESLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIX2</accession>
    <name>A0A392NIX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Filament-like plant protein 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0020335</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FPP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039997">
        <property type="protein sequence ID" value="MCH99323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008587">
        <property type="entry name" value="FPP_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580:SF31">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05911">
        <property type="entry name" value="FPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="23"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH99323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19203" checksum="DA05C743C141DF82" modified="2018-12-05" version="1">MKRARSNDYVNQKNSPVRTEWEITAASEKLAECQETILNLEKQLKEIAATKDVSIFDNIIAAHRRPIITNTTNVSVPYTKVKNRPTLLDQMLAEDDAKAKACKASERSFIHPLEKIVVLKGVKGRDDGVNLNSLAILPVKKYGRLSLWKRMLGTRRKPKRKQVYQFNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK20</accession>
    <name>A0A392NK20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0021198</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042440">
        <property type="protein sequence ID" value="MCI00181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NK20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000322">
        <property type="entry name" value="Probable disease resistance protein At1g63360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1241">
        <property type="entry name" value="DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="3">
        <location>
            <begin position="37"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="18435" checksum="909E4E2F78A6A6C4" modified="2018-12-05" version="1" fragment="single">MNNNIWNLSKDDILPSLRLSYQYLPSYLKRCFAYCSIFPKGYPIDRKQMVLLWMAQGFLEHSMVEKAEEEVGNEYFTELLSRSLIEQLNDDTDGERFVMHCLVHDLATIVSGKSCSKLESGRGRIHHFLYHQEEYDLYKKFEIVDDFECLRSFLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK77</accession>
    <name>A0A392NK77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Homeobox domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0019863</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038691">
        <property type="protein sequence ID" value="MCH98854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NK77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007759">
        <property type="entry name" value="Asxl_HARE-HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044977">
        <property type="entry name" value="RLT1-3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968:SF17">
        <property type="entry name" value="HOMEOBOX DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968">
        <property type="entry name" value="HOMEOBOX-DDT DOMAIN PROTEIN RLT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05066">
        <property type="entry name" value="HARE-HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51913">
        <property type="entry name" value="HTH_HARE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0371">Homeobox</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="HTH HARE-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="115"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="116"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="164"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH98854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="19917" checksum="692CA854CAB8F32E" modified="2018-12-05" version="1" fragment="single">MQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKPSEHCNDFSSSGKENLGHDAELKDEFDKDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKG6</accession>
    <name>A0A392NKG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Twinkle-like protein chloroplastic/mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019963</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038956">
        <property type="protein sequence ID" value="MCH98954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01029">
        <property type="entry name" value="TOPRIM_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034154">
        <property type="entry name" value="TOPRIM_DnaG/twinkle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027032">
        <property type="entry name" value="Twinkle-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12873">
        <property type="entry name" value="T7-LIKE MITOCHONDRIAL DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12873:SF0">
        <property type="entry name" value="TWINKLE MTDNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="Prokaryotic type I DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Toprim" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8720" checksum="DF055B5B970E9E7E" modified="2018-12-05" version="1" fragment="single">MDKLAMEEAGFRNCVSVPDGAPPSVSSKEVPPEEKDTKYQYLWNCKDELKQASRIIIATDGDPPGQALAEELARRIGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLC5</accession>
    <name>A0A392NLC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor bHLH66</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021623</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043709">
        <property type="protein sequence ID" value="MCI00603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="15894" checksum="EE092872FDF6794D" modified="2018-12-05" version="1">MEGESNKDNNSSELASYDNEETSSHDVSEDHQIQNQQFVGTSGTQWSSLPKLPQNNYVEYLSESSANYFPNPMIHGNNYQNFGGGSSSFNDSGKAAFDFKLIDSSSNDFGIRKRVGFRRYDEGEEVIKAEIGSSQNLLCAQLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR58</accession>
    <name>A0A392NR58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin-like 4 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048825">
        <property type="protein sequence ID" value="MCI02341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NR58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02947">
        <property type="entry name" value="TRX_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044176">
        <property type="entry name" value="TRL4_chloroplastic"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47912">
        <property type="entry name" value="THIOREDOXIN-LIKE 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47912:SF1">
        <property type="entry name" value="THIOREDOXIN-LIKE 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="33"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12481" checksum="67CE913BAE3CFF58" modified="2018-12-05" version="1" fragment="single">FPGKTRVVVDEYQQDLPDEDDDVCPVECVREFKTDEEFGRILDKSKGTGSLVVVDFFRTSCGSCKYIEQGFAKLCRKSGSHDAPVIFLKHNVIDEYDEESEVAERLRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS39</accession>
    <name>A0A392NS39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047492">
        <property type="protein sequence ID" value="MCI01896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NS39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7280" checksum="91F19E27824D2464" modified="2018-12-05" version="1" fragment="single">GMWERVVVISNVQLCIQNMLLFVLETTEKNNDDDDSDDDDDSSDDDDDDSDDDDDDSDDDDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU12</accession>
    <name>A0A392NU12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Importin subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0027420</name>
    </gene>
    <organism evidence="7 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">10/8</strain>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the importin alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049806">
        <property type="protein sequence ID" value="MCI02659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010061583">
        <property type="protein sequence ID" value="MCI06361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NU12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032413">
        <property type="entry name" value="Arm_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23316">
        <property type="entry name" value="IMPORTIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16186">
        <property type="entry name" value="Arm_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="ARM" evidence="5">
        <location>
            <begin position="6"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="136"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="143"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI02659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI06361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18000" checksum="9877A8B5BBA0BE34" modified="2018-12-05" version="1" fragment="single">AVIEAGLIAPIVNLLQNAEFDIKKEAAWALSNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEVEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGSQPGFNFGSNDLSVPSGGFNFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NX64</accession>
    <name>A0A392NX64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024736</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052981">
        <property type="protein sequence ID" value="MCI03696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NX64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15843" checksum="1016A3439C46205C" modified="2018-12-05" version="1" fragment="single">MENSVWLLGNGDQDITFWNDNWCGIPLVEQFNIPAHISHSLSSTVSDYIVNGLWNIPPQLSQAYTNLGSIVHQVIIPMEPSQDKLLWKHTDSGDLQLKEAYHFKIQQFQDLYWANTIWSPDIPPSKSLLPTDENLILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXP4</accession>
    <name>A0A392NXP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA topoisomerase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055794">
        <property type="protein sequence ID" value="MCI04563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.41">
        <property type="entry name" value="Yeast DNA topoisomerase - domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013034">
        <property type="entry name" value="DNA_topo_DNA_db_N_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008336">
        <property type="entry name" value="TopoI_DNA-bd_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036202">
        <property type="entry name" value="TopoI_DNA-bd_euk_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051062">
        <property type="entry name" value="Topoisomerase_IB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10290:SF23">
        <property type="entry name" value="DNA TOPOISOMERASE 1 BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10290">
        <property type="entry name" value="DNA TOPOISOMERASE I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02919">
        <property type="entry name" value="Topoisom_I_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56741">
        <property type="entry name" value="Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA topoisomerase I DNA binding eukaryotic-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="11396" checksum="61F27C31B85FF33E" modified="2018-12-05" version="1" fragment="single">VATLFAVMRDTEYMQKEIFKDNFWNDWRELLGENHVIQNLKDCDFTPIYDWCQIEKDKKKQMSLEEKKALREEKMKQEEKYMWAIVDGVKEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXS6</accession>
    <name>A0A392NXS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NB-LRR type disease resistance protein Rps1-k-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0025648</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055912">
        <property type="protein sequence ID" value="MCI04601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="4">
        <location>
            <begin position="7"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI04601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17524" checksum="AFC06F51855D5F0A" modified="2018-12-05" version="1" fragment="single">MALVAAVAVLNDAEKKQFKDSAVNKWLDDLNYAVYDADDIWGTISTKAAISKNKKVSTATNYFSRFFNFEERDMVCKLEDIVARLESILKFKDILGLQHIATDHHSSWRTPSTSLVDVGSNIFGRDQDKEALLKLLLDDDNDDDPKISVIPIVGMGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYV9</accession>
    <name>A0A392NYV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055997">
        <property type="protein sequence ID" value="MCI04624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8840" checksum="DA0F60FE28446F69" modified="2018-12-05" version="1">MLVIVFEWCCLHSLLLSVWCLDVRSLMLFCCVLGLVGFGFDQIVVLRCSVQVLCQGLWGVVLGSLAALQVAGSVRILRRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZI9</accession>
    <name>A0A392NZI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DnaJ-like subfamily B member 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053794">
        <property type="protein sequence ID" value="MCI03945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11381" checksum="6E4BBB5F5D1C2D0D" modified="2018-12-05" version="1" fragment="single">MKVLSDPQKRAIYDQYGESGLKNGMAPTDEGAATYFQTPDGRRFRFNPRSANGIFAEAFGFSSPCGGMGMRGGGCRGMRGRSWVSSAFGDIFGQDMFAESRQASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P017</accession>
    <name>A0A392P017_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0026103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057397">
        <property type="protein sequence ID" value="MCI05054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P017"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4484" checksum="3B0E9107F05744D5" modified="2018-12-05" version="1" fragment="single">DFEVTTDSVTSRHGKGSDAHDVLEIYLGLPLFDTLVPYACT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6W4</accession>
    <name>A0A392P6W4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0028601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065737">
        <property type="protein sequence ID" value="MCI07532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6W4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11338" checksum="24A5C7BBD84B4524" modified="2018-12-05" version="1" fragment="single">GCNRQSMVHDRMSQFNSIKGLLLGVCAKEIETINGHDSEVKNNTNARQQNVSHQQRYICSGDGVSSETEGLHYKLRMQHQRHKWGVCFSVFGVDSADSSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8U7</accession>
    <name>A0A392P8U7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(P)H dehydrogenase B3 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0029565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069206">
        <property type="protein sequence ID" value="MCI08488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8U7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9751" checksum="92AD7D6E11025EED" modified="2018-12-05" version="1" fragment="single">YKHLGQFAPLGGEQTAAQLPGDWVSIGQSSQWLWYSVYARKISVSIPDSLNNASRLSAGISISGMPPDVNFSCQIIIVTLLLKLCWNEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC92</accession>
    <name>A0A392PC92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polyprotein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0030797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073604">
        <property type="protein sequence ID" value="MCI09708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8614" checksum="1E0B5DFF85B563D0" modified="2018-12-05" version="1">MKFALQNSFSEESSESDEESVSVYSVKKIGSILPTPPLPCVEIQILASKFAHPRKVIRYMDTGAQITMMNPKILPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF10</accession>
    <name>A0A392PF10_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031151</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074875">
        <property type="protein sequence ID" value="MCI10060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="100"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22275" checksum="770950606AEBC841" modified="2018-12-05" version="1" fragment="single">DMMEETMEVFMDDFSVFDKSFDSCLSNLNAVLKRGIEVDQAKIEVIKDLPPPLNVKGVRSFLGHAGFYRRFIKDFSKISKPISSLLVKDAIFNFDDACLDAFNCKLVTAPVIVVPQWDLPFELMCDASDYAVGAVLGQHHGKLFHVIYYSSKVLNENQINYTTTEKELLAVVYALEKFRPYLIGSKTLDMDAPSTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF22</accession>
    <name>A0A392PF22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031171</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074964">
        <property type="protein sequence ID" value="MCI10079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5971" checksum="7588FFAC278C1A00" modified="2018-12-05" version="1" fragment="single">MNSVDTSIAQSIVFIDNASDVWIDLKERFSQGDLVRVSELHQEIYALTQGSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF55</accession>
    <name>A0A392PF55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative calcium-binding protein CML25-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0031836</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077446">
        <property type="protein sequence ID" value="MCI10741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000001">
        <property type="entry name" value="Calmodulin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039647">
        <property type="entry name" value="EF_hand_pair_protein_CML-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10891">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="45"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="81"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="118"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="154"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI10741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="186" mass="20733" checksum="1E309695BAA12E87" modified="2018-12-05" version="1" fragment="single">MGFRSLFNRKKKLLKKLTSSSPTTVTENTTFISRTPSLSFQSRVHFAEDLEHVFQKFDVNGDGKISSSELGSIMRSLGQPXXXXXXDKMIREVDADGDGYINLEEFIELNTKDIDPNEVLENLKDAFSVFDLDKNGSISAEELHNVMVSLGDQCSLAECQKMIGGVDSDGDGMIDFEEFKKMMMGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT59</accession>
    <name>A0A392UT59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967374">
        <property type="protein sequence ID" value="MCI79156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5126" checksum="FD2E7124A2B20D50" modified="2018-12-05" version="1" fragment="single">NDDDEEEEDEDGDDDDDDDDDDDDEDDDGDSHDNKVKITRRHSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVB6</accession>
    <name>A0A392UVB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010966609">
        <property type="protein sequence ID" value="MCI79123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2221" checksum="EB316ADDA753A250" modified="2018-12-05" version="1" fragment="single">MREGGTNGDGGGKRRSHRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVI9</accession>
    <name>A0A392UVI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100172</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010961583">
        <property type="protein sequence ID" value="MCI78901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5121" checksum="CA380110F3E24589" modified="2018-12-05" version="1" fragment="single">MKKVVELGQQLREMTAAFDDYKNMHALQQNLVKELEKTEAKLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW94</accession>
    <name>A0A392UW94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative gag polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963528">
        <property type="protein sequence ID" value="MCI78985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6636" checksum="67771CD94AD9F81E" modified="2018-12-05" version="1" fragment="single">MRNKRVNRSGSFSVGGPSRPSNQNRGGQGNWPYNRPQNNGGSNRSGNQGTRGTPGGEKLTCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWW9</accession>
    <name>A0A392LWW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000075">
        <property type="protein sequence ID" value="MCH79375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="23295" checksum="0B7CBA369E2FCC88" modified="2018-12-05" version="1">MHKENHENNEERDITKKSNSQAYLSQPNKSRRENSGGILNNSNRSQERSNKVPKLATRGTQAFKGRPVSVAKKGVEKLSEILSTNEVEKLVDTLAQKPNNNETQEPNKEKDENCVVIIREEMEGSKSERGGIESLTKMNIGQAGVMQPNIPRPPNNQDTPPLHSPKQVTMQREVFVENEVFLDANDQGSGVSLDSDIDMATETPSPNFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXA4</accession>
    <name>A0A392LXA4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lectin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000343</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000209">
        <property type="protein sequence ID" value="MCH79591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXA4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd06899">
        <property type="entry name" value="lectin_legume_LecRK_Arcelin_ConA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000985">
        <property type="entry name" value="Lectin_LegA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF31">
        <property type="entry name" value="LECTIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00308">
        <property type="entry name" value="LECTIN_LEGUME_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Legume lectin" evidence="4">
        <location>
            <begin position="67"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="38"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH79591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="307" mass="33635" checksum="1CDC685C7067C8E5" modified="2018-12-05" version="1">MALSNIKYNPTTHSTPLIKIFITFLFLQYHNVNSQYSPIPISSPPEPSPEPSPSPSSPQPPRPESTVSFTIEQFKEDDPNIFVLGDASISDGIVSLTKTDQYGKPLQKSVGRVTHITPIHIWDKTSGKLADFSTGFSFIVNTNGSKFHGDGFTFFLGPLDFDLPKNSSGGYLGLFNPETALVPSQNPVIAIEFDTYTNGWDPSSPSQFPHIGIDIGSLDSVATVNWPIDDFVETNALGEASISYISESKKLSVFVDYPNSEREGFSVSYVVDLRSVLPEWVRVGFSAATGELVETHDITNWSFDSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXR0</accession>
    <name>A0A392LXR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">A2U01_0000507</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000339">
        <property type="protein sequence ID" value="MCH79751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="16" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="18">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="19">
        <location>
            <begin position="459"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="823"/>
            <end position="849"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="16">
        <location>
            <begin position="644"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="17">
        <location>
            <begin position="830"/>
            <end position="848"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCH79751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="865" mass="98482" checksum="2FACA9D4A5218965" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXS0</accession>
    <name>A0A392LXS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000429</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000276">
        <property type="protein sequence ID" value="MCH79675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF455">
        <property type="entry name" value="RLK (RECEPTOR-LIKE PROTEIN KINASE) 8, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="696"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="545"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="608"/>
            <end position="628"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="945"/>
            <end position="1019"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="981"/>
            <end position="991"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="993"/>
            <end position="1002"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1004"/>
            <end position="1019"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1064" mass="118590" checksum="7D1296DC1420BCD0" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXW7</accession>
    <name>A0A392LXW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0000567</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000383">
        <property type="protein sequence ID" value="MCH79810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001091">
        <property type="entry name" value="Probable disease resistance protein At1g61300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000322">
        <property type="entry name" value="Probable disease resistance protein At1g63360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1052">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RPM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="157"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="418"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="5">
        <location>
            <begin position="533"/>
            <end position="851"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH79810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="878" mass="99957" checksum="1EF0339EE01B08D7" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYP3</accession>
    <name>A0A392LYP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ankyrin repeat containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000838</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000657">
        <property type="protein sequence ID" value="MCH80076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198">
        <property type="entry name" value="ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24198:SF165">
        <property type="entry name" value="ANKYRIN REPEAT-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ANK" evidence="4">
        <location>
            <begin position="57"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16417" checksum="262D6D578E5685C1" modified="2018-12-05" version="1">MAAAYQHDIEVEQGDLQTDIDMFHMAIKKGLWNGANEYITRHGVDIISQKSLSSSSKGWTSLHVAVDAGKFEIMKKLVEKGALLTEKDSEGYTPFALVVELNDIFVVDWMLNVGGNELLTMKINSEDDKGDIPVVLAATKGYKLQRND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ71</accession>
    <name>A0A392LZ71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0001063</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000893">
        <property type="protein sequence ID" value="MCH80296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF11">
        <property type="entry name" value="TRANSPOSON TY4-P GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="10">
        <location>
            <begin position="1"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH80296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28079" checksum="D72DC2FBBC1C0403" modified="2018-12-05" version="1">MRSSSVLEVVHSNVCGPFDEKSLGGNRYFITFVDEYSRKMWIYLIQTKDEVFDEFKRFKALVENQSSKRILRTDGGGEYTSKKFESFCVENGIEHEVTAPYTPQHNGLAERRNMTILDMARCMKMTFSRDVIVDEAKSWDWISGSSTSKPLISSIENEDIDSESSDEVEAPNVEIRARSTRTRQVPVRLQDCELANDNEVNEEGELVHFALLSGAEPINYLEALNDKKWKKAMEEELTAIERNQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1X5</accession>
    <name>A0A392M1X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Auxin-induced protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002061</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ARG7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002096">
        <property type="protein sequence ID" value="MCH81276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1X5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009733">
        <property type="term" value="P:response to auxin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003676">
        <property type="entry name" value="SAUR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31929">
        <property type="entry name" value="SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02519">
        <property type="entry name" value="Auxin_inducible"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10573" checksum="C0A757B10DC9AF93" modified="2018-12-05" version="1">MVFRLNSIRRASLTANQAASKSLEVRKGYVAVYVGQKQKRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCTEDIFQNITSRFRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M276</accession>
    <name>A0A392M276_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Oxidation resistance protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002161</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the OXR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002225">
        <property type="protein sequence ID" value="MCH81375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M276"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006571">
        <property type="entry name" value="TLDc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23354:SF62">
        <property type="entry name" value="MUSTARD, ISOFORM V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23354">
        <property type="entry name" value="NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07534">
        <property type="entry name" value="TLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51886">
        <property type="entry name" value="TLDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TLDc" evidence="6">
        <location>
            <begin position="186"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="76"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00040604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH81375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="267" mass="29902" checksum="FE83C331EFBC589F" modified="2018-12-05" version="1">MKKKQSLRNKATNFVSVLLNPISDPDSHQPSKHSSEGEGELKKSDEEGNNNNHDLVDDGPDTSSFTAFLYSLLSSSDSKENDNSNGQNDDKGEPHNNNNNNHSSPLPDSSIEENGGRKSLFSRSKQSVGRVIRRAVRIRGFRHHDRKDSNNNLEVKLEDRRKESLPVKESLPVALDDFPGISEPSVLVSEIIRNVLYASLPPLMHGRKWLLLYSTWRNGISLSTLYRRSMLWPGLSLLVVGDKKGAVFGSLVETPLKPSTKRKYQVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M399</accession>
    <name>A0A392M399_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002818">
        <property type="protein sequence ID" value="MCH81822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M399"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="17034" checksum="AEDB7670D226C878" modified="2018-12-05" version="1">MDFKWDIEKFTVMNDFGLWKVKRQAILAQQKCKDALLGEANMSGHLTRSQKTEMIDKATCAIILCLGDKVMREVAKSLARRLFLKQQLYAFRMVESSSLAKSYENFKHAPLYGKEGTITLEEVQSMIKTKDLTKPKDKVDDNVMLECF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3D0</accession>
    <name>A0A392M3D0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001900">
        <property type="protein sequence ID" value="MCH81114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14393" checksum="CD53F93FBBF751A2" modified="2018-12-05" version="1">MHDTKPVSTPMCTSCSFLTPADTPVCAITAYRTIIGSLQYLSLTKHDISFSINQLSQHLSNANIAPLTSSKTCFVIPKSTLTQGLHLTRDKSSPYCRFSTFRLDLNWQTSSQSHCQAYDILTFIIDIQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3N8</accession>
    <name>A0A392M3N8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002699</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002943">
        <property type="protein sequence ID" value="MCH81905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="44"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="120"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="365"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="479"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="128"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="152"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="489"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="535" mass="61954" checksum="03BA7251F62FF30D" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M436</accession>
    <name>A0A392M436_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002840">
        <property type="protein sequence ID" value="MCH81833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M436"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="17429" checksum="C0D19D0A033C5424" modified="2018-12-05" version="1">MTVSLGSDVIPWYASIWWKDICSMGTNLNLNWFAQQVVRKVGNGANTTFWYDKWVGDMVLKDKFPRLFTISNRKEAMVKDLVMEADGTLSWNFSWRRHLFAWEVALQNELMVVLNEFRLTNENDVWGWEPEKRGIFTVYSTYRFLVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M452</accession>
    <name>A0A392M452_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myosin-15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003144">
        <property type="protein sequence ID" value="MCH82059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M452"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002710">
        <property type="entry name" value="Dilute_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51126">
        <property type="entry name" value="DILUTE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dilute" evidence="2">
        <location>
            <begin position="100"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18079" checksum="44659930344ACD69" modified="2018-12-05" version="1" fragment="single">MKEFEQKSSQLAQNLKSLEEKLLSLENENHVLRQKALSVSPKSNRPGFAKSSLEDNYEFLARCIKENLGFKNGKPVAASIIYKCLLHWHAFESERTAIFDYVIDRINDAIKVSDNDTVLPYWLSNTSALVCLLQRNVRSNGFLTTTAQRYAGSYGLTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4A4</accession>
    <name>A0A392M4A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003218">
        <property type="protein sequence ID" value="MCH82109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12593" checksum="44B728C1C9B9266E" modified="2018-12-05" version="1">MSSLNVSFSVDALNLDPDSVFDPDQDLFHHHVFRGKVTRTSFTFHLSRLPRRSRIMVFNDSRTAGFDGFVVIYSRYFSMSLYNSCESLFMETPYNMLISKLSMIAYGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4G1</accession>
    <name>A0A392M4G1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Seipin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0002059</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002095">
        <property type="protein sequence ID" value="MCH81274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4G1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140042">
        <property type="term" value="P:lipid droplet formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd23995">
        <property type="entry name" value="Seipin_BSCL2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009617">
        <property type="entry name" value="Seipin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21212">
        <property type="entry name" value="BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21212:SF5">
        <property type="entry name" value="SEIPIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06775">
        <property type="entry name" value="Seipin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="72"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="278"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="361"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="364"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="385"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH81274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="399" mass="44561" checksum="91866050C7436A26" modified="2018-12-05" version="1">MEENQKNSFVLPTPADLIYSNMVSVFSPLLSLLTVTSESYHHGEETKDNAPSQIAYGSIVLLKKLVLCLLSAAYVCMILFLILILASVVGVGLVRFWVEEPVIVHESLHFDYTDAHPTAVFSFNGGVDASGGYIKKKHIRVPVGHAFSVSLSLLMPESDFNRELGVFQLTAELLSVKGNVIAKSSQPCMLRFRSSPIRLARTVMMGVPLVLGISAEAQKINVEILRHKEQNQRTNAIRVTLHPRAGTSSLPQLYEAEIVINSHLPWAKELIRNWKWTFYVWVSLYVYILLLMLLLCCYRPLIFLVTPESFSNQRVSEVISEEHKELQVGELLGDESDVSELLRKWRHSRSKRKTILTHGVPEATGSSASSISMTTTREDVTSVAVEDDDVEDSESVCTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4T7</accession>
    <name>A0A392M4T7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003551">
        <property type="protein sequence ID" value="MCH82345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="306"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="682" mass="77532" checksum="C0FB014487EECE2A" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4T8</accession>
    <name>A0A392M4T8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003466">
        <property type="protein sequence ID" value="MCH82289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16374" checksum="976200E16C8A8B46" modified="2018-12-05" version="1">MKNIRGSWKELRKSKDTSLGRMTNNAFELISNGVTKKNDINIKSSESSETNLDSVGSIDIFRPNESVLGVGVEVKIKVVDFIHDGLRQSSIETNKVRRKRVTNFITFKSNVIDVNIKRQRCVEDLRMYDGRTKMMSYLIMLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M556</accession>
    <name>A0A392M556_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AFG1-family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003802">
        <property type="protein sequence ID" value="MCH82522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M556"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005654">
        <property type="entry name" value="ATPase_AFG1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169:SF6">
        <property type="entry name" value="AFG1-LIKE ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169">
        <property type="entry name" value="ATPASE N2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03969">
        <property type="entry name" value="AFG1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14672" checksum="AD62374AB38FF61E" modified="2018-12-05" version="1">MGAADYIAVAENYHTVFISDIPVMSMRIRDKARRFITLIDELYNHHSCLCCLASSSIDELFQGTEEGTLFDLESFQFETEAEGGKLRRDVLAEGNVGSGGTPVGITSILSGQEELFTFQRACFFFLTASLAPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5E4</accession>
    <name>A0A392M5E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycerol-3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003849">
        <property type="protein sequence ID" value="MCH82556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10973" checksum="D7B1C0B79674F6EA" modified="2018-12-05" version="1">MVAALTNESATSKSVYFAHCTSEMIFITHLIAEEPEKLAGPLLADTYVTLLKGRNAWESPVQAILQALRDETMNDPRDRIKIAQSHVFYRPSLLGQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5S9</accession>
    <name>A0A392M5S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nitrate transporter 1.5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004156">
        <property type="protein sequence ID" value="MCH82762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010137896">
        <property type="protein sequence ID" value="MCI23794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5280" checksum="DBED3F582B156E0A" modified="2018-12-05" version="1" fragment="single">MACLEVCKEGKFKEETEELTLDGSVDWHGRPAIRAKSGRWFAGTIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5Z6</accession>
    <name>A0A392M5Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Mitochondrial-like substrate carrier family protein B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003654</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004263">
        <property type="protein sequence ID" value="MCH82842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24089">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="Solcar" evidence="5">
        <location>
            <begin position="3"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10806" checksum="98F5EDF12911A291" modified="2018-12-05" version="1">MLESMLLEKEGVGNLEATFPLDLVRRRMQLEGVGGRARVYNTSLFGTFGHIFRNEGIRGLYRGILPEYYKVVPGVGIVFMTYETLKSLLSSFQNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M630</accession>
    <name>A0A392M630_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Mediator of RNA polymerase II transcription subunit 11</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Mediator complex subunit 11</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">MED11</name>
        <name evidence="5" type="ORF">A2U01_0003695</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Component of the Mediator complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the Mediator complex subunit 11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004330">
        <property type="protein sequence ID" value="MCH82882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M630"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019404">
        <property type="entry name" value="Mediator_Med11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22890">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10280">
        <property type="entry name" value="Med11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0010">Activator</keyword>
    <keyword evidence="3 4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9236" checksum="91B1D0EBAB167A55" modified="2018-12-05" version="1">MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDLVQNHCLEFMQLIKRQCALTLILYGIVDFDESAMKTATLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6K5</accession>
    <name>A0A392M6K5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0003744</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004396">
        <property type="protein sequence ID" value="MCH82931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008047">
        <property type="term" value="F:enzyme activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02947">
        <property type="entry name" value="TRX_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000001">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45663">
        <property type="entry name" value="GEO12009P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45663:SF16">
        <property type="entry name" value="THIOREDOXIN M4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00421">
        <property type="entry name" value="THIOREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 7" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Thioredoxin" evidence="8">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="7">
        <location>
            <begin position="33"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH82931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11883" checksum="7D9B889BC7BFBCAA" modified="2018-12-05" version="1">MDIAVASITDGNWQSLVIESDTPVLVEFWAPWCGPCRVIHPIIDELAKDHAGKLKCYKLNTDESPSTASRYGXRSIPTVIIFKNGEKKDAVIGAVPKSTLTTIIEKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6N0</accession>
    <name>A0A392M6N0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004636">
        <property type="protein sequence ID" value="MCH83090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6N0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12181" checksum="CDA2E68F99009433" modified="2018-12-05" version="1">MEGCLEVYPLIDSGASQLHYRQTSASLVLPITTTKEYKVGLQNGNWTEKSRSFAQDSCDVILKGNCTSFNTSIQHLAREVNSNKIEIPNLVSAATTSLEGKQLRRSKYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7E9</accession>
    <name>A0A392M7E9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004227</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005143">
        <property type="protein sequence ID" value="MCH83407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="24756" checksum="2C66464EC12BBA41" modified="2018-12-05" version="1" fragment="single">MGLTTRSQGSRIRRNSWLIVKPWDREFDPRTIDFDHAPVWIQLWGLPPHCKTKAMGTHLGSIMGDVEASEIYEYPGKQLIIKIKVAINVHQPIPSDYAETVLWRMILXXXXXXXSNPSHSPNFGKYSPKVPEELLKQMAAMKIQPTREPNPMEQNTAGATTQNPNLAVAIINMDEAGSFKQTGGGQHKGLQIADTTRQHEGVSTQQVKRLRLAYENINNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7M9</accession>
    <name>A0A392M7M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serpin-ZX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004246</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005178">
        <property type="protein sequence ID" value="MCH83426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.39.10">
        <property type="entry name" value="Alpha-1-antitrypsin, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.310.10">
        <property type="entry name" value="Serpins superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023795">
        <property type="entry name" value="Serpin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042185">
        <property type="entry name" value="Serpin_sf_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF211">
        <property type="entry name" value="GH10112P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="SERINE PROTEASE INHIBITOR, SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00093">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00284">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serpin" evidence="3">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="26036" checksum="A9993476B5455F52" modified="2018-12-05" version="1">MVRSLTRLIFANALYFKGAWKQRFDVSKTKDYDFHLLSGSSVKVPFMTSKNDQFIGSFDGFKVLGLPYKQGKDKRQFSIYIFLPDAKDGLLAMIDKVTSNSEFLEDMLPVKKVEVGKFRIPKFNISFGVDATKLLKELGLDLPFKGGLTXXXXXXXXEELYVSDIAQESFIEVNEEGTTAAAVTVARVVAKSFRIPTLIDFVADHPFLFMIRDDFSGTILFTGQVLNPLVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9B8</accession>
    <name>A0A392M9B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006162">
        <property type="protein sequence ID" value="MCH84036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="35"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11650" checksum="8670C12A88FE740A" modified="2018-12-05" version="1" fragment="single">MFPALRNLVDQVTLPSEQLNDSLVWTDIDSEQVVKQSSLFAELCGVLRAIEIAAQRNWLNLWIETDSSLVVLAFKNSSLIPWSLRNRWPNCQVKLRSMNFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA22</accession>
    <name>A0A392MA22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005998">
        <property type="protein sequence ID" value="MCH83945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039349">
        <property type="entry name" value="PRIN2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35987:SF2">
        <property type="entry name" value="PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35987">
        <property type="entry name" value="PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7309" checksum="CC163ECD97EFC605" modified="2018-12-05" version="1" fragment="single">IFSTFLHSEYGGPGTLLVDPFADMADIINERELPGGPQAARTALKWAHANVDKDWNEWIRGNRNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAP2</accession>
    <name>A0A392MAP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005412</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007048">
        <property type="protein sequence ID" value="MCH84580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932">
        <property type="entry name" value="ATPASE EXPRESSION PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47932:SF63">
        <property type="entry name" value="OS08G0290000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017360559" evidence="4">
        <location>
            <begin position="20"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="83"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="124"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21273" checksum="2ABD69DE446B55AA" modified="2018-12-05" version="1" fragment="single">NEINSRFLFIVTPLPLIAASRLDSVPSPTTITGVRIEVSFFFYYSPLKAATLSHSISCLCFSGKVQDALHFHDHVVAHEFHLNQVSYGTLINGLCKIGETKAAMQVLRQIEGKLVKPCVGVCPDVVTYTSLTYGFCIVGQLKEAIGLLNEMVYSSPSHTNYGVLSSAIPPAVLQALLTGNKVVGNKAYPETDRVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB91</accession>
    <name>A0A392MB91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dynamin-related protein 3A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006715">
        <property type="protein sequence ID" value="MCH84369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000266">
        <property type="term" value="P:mitochondrial fission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016559">
        <property type="term" value="P:peroxisome fission"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1240">
        <property type="entry name" value="Dynamin, middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022812">
        <property type="entry name" value="Dynamin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000375">
        <property type="entry name" value="Dynamin_stalk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11566">
        <property type="entry name" value="DYNAMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11566:SF21">
        <property type="entry name" value="DYNAMIN RELATED PROTEIN 1, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01031">
        <property type="entry name" value="Dynamin_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dynamin stalk" evidence="1">
        <location>
            <begin position="1"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19202" checksum="D7C4E21C139D1A0F" modified="2018-12-05" version="1" fragment="single">FSSLVEGKNKEMSTSELSGGARIHYIFQSIFVRSLEEVDPCEGLTDDDIRTAIQNATGPRSALFIPEVPFEVLVRRQISRLLDPSLQCARFIHDELIKMSRYCMTLVTELQRFPLLRKRMDEVIGIFLLEGLKPSTNVIGHIIDMEWLDASQHGGWPHSRVMLRCKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBA0</accession>
    <name>A0A392MBA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007374">
        <property type="protein sequence ID" value="MCH84787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="567" mass="64606" checksum="F4F286C7FA3F3640" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCG6</accession>
    <name>A0A392MCG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005585</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007317">
        <property type="protein sequence ID" value="MCH84749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF34">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="30036" checksum="3A787B1DF9AC06C6" modified="2018-12-05" version="1" fragment="single">MAESSSFMQPSIPKFDGFYDHWAELMENLIRSKEYWSLIEDGVVVAPANATPEQTQAANESRLKDLKVKNFLFQSIDRSILETILERDTSRDIWESMRRKYQGSNKVKRAQLQSLKREFEILCMKEDESVNDFFARTLAIANKMTAQGERMTGSTIVEKILRSMTSKFDYVTCAIEESRDVTAMSIDELQSSLLVHEGKMKNHRIREEEQALKVSNLGRGNINNASRGRGRGPSRGRVEFNEYEEILMMAQQQPCNNTTDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX3</accession>
    <name>A0A392MCX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Two-component response regulator-like APRR2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0005793</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007666">
        <property type="protein sequence ID" value="MCH84955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000007">
        <property type="entry name" value="Two-component response regulator"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044825">
        <property type="entry name" value="GLK1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006447">
        <property type="entry name" value="Myb_dom_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01557">
        <property type="entry name" value="myb_SHAQKYF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31312">
        <property type="entry name" value="TRANSCRIPTION ACTIVATOR GLK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31312:SF6">
        <property type="entry name" value="TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="CheY-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="HTH myb-type" evidence="9">
        <location>
            <begin position="224"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="94"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="162"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="98"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="185"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="205"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH84955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="276" mass="30335" checksum="F8DED11FC0F8951D" modified="2018-12-05" version="1" fragment="single">MILAIFHVVTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAESSALSESLKPVKESVESMLQLETDNKLHESTILIDLENVSKSSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENVNAESSPQPTKPLIKEEDDFANGSKGESSFLTNPQSKKLLGDTGGNASPNETSGPKDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX8</accession>
    <name>A0A392MCX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Puromycin-sensitive aminopeptidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006302">
        <property type="protein sequence ID" value="MCH84124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7047" checksum="D6A05689A76A7BE2" modified="2018-12-05" version="1" fragment="single">FASLEKAKEVEEFFASYPMPSIARTLKQSLERVHINANWVQNVQSEKSLADAVKELAYRNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDM2</accession>
    <name>A0A392MDM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006738">
        <property type="protein sequence ID" value="MCH84384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="29"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12272" checksum="D070226849FA6E45" modified="2018-12-05" version="1">MRASFDDYKNKHTLQQDLIKTLEMTEAKLGDVVKERDALLERVKELEGKIHSLEEKLKYAEVVRSPTEEEKEADPVGMYTKSSRAELITKIFEEESTMLEAANSLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDZ7</accession>
    <name>A0A392MDZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter G family member 31-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008976">
        <property type="protein sequence ID" value="MCH85700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDZ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19241">
        <property type="entry name" value="ATP-BINDING CASSETTE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="2">
        <location>
            <begin position="2"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15099" checksum="72DA9ED0F103462E" modified="2018-12-05" version="1" fragment="single">KTGSITYNGHEIDEFYVRRTSAYISQTDNHIPELTVRETLDFGARCQGAEEGFAAYTKDLGRLENEKNIRPSPEIDAFMKASSVGGKKHSVNTDYILKVLGLDICSDTIVGNDMVRGVSGGQRKRVTTGFSLFFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEV1</accession>
    <name>A0A392MEV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009635">
        <property type="protein sequence ID" value="MCH86047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057235">
        <property type="entry name" value="DUF7913"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057237">
        <property type="entry name" value="DUF7915"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33913">
        <property type="entry name" value="ALEURONE LAYER MORPHOGENESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33913:SF1">
        <property type="entry name" value="DRBM DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25500">
        <property type="entry name" value="DUF7913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25502">
        <property type="entry name" value="DUF7915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7913" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="DUF7915" evidence="2">
        <location>
            <begin position="114"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="241" mass="27574" checksum="A0ED53D5BDE8AC0A" modified="2018-12-05" version="1" fragment="single">VHSVVLLYNYYHRKQHPELEYLPFNEFCKLIGVLRPPLLAYMQFMQKLNEVELIDVEKQLSLTEKVIMDACDICRCLDASKTVPNVQGWPISKVSILLIDSKKENCFLLFDSITSGVWSVVEKNVDTSSQNPEVGSETKNTNKRKRVIRKSAKDEFKVDEDELLQVGYSAIKEATGINNTDIVLLESYTIYSQSKEKAASRFFIMQCSQSINQEVSRVNDINVPSFLIDKIMRPVSVRHSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF22</accession>
    <name>A0A392MF22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Vacuolar-sorting receptor 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0006623</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Endomembrane system</location>
            <topology evidence="15">Single-pass type I membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VSR (BP-80) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009109">
        <property type="protein sequence ID" value="MCH85773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.25.10:FF:000178">
        <property type="entry name" value="vacuolar-sorting receptor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056858">
        <property type="entry name" value="VSR_TRX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22702">
        <property type="entry name" value="PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22702:SF1">
        <property type="entry name" value="PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25011">
        <property type="entry name" value="VSR_TRX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="17" id="KW-0675">Receptor</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Vacuolar sorting receptor thioredoxin-like" evidence="16">
        <location>
            <begin position="19"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00046288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF25011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH85773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="285" mass="32299" checksum="49B9AD0454ED58AD" modified="2018-12-05" version="1" fragment="single">MVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSDVETNECLSNNGGCWLDKGANITACKDTFRGRVCECPLVDGVQFKGDGYTTCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFB1</accession>
    <name>A0A392MFB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin carboxyl-terminal hydrolase 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006715</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009277">
        <property type="protein sequence ID" value="MCH85863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057372">
        <property type="entry name" value="Ubiquitin_UBP8/5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25242">
        <property type="entry name" value="Ubiquitin_UBP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBP8/5-like ubiquitin-like" evidence="2">
        <location>
            <begin position="29"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15565" checksum="A4039F736F08B057" modified="2018-12-05" version="1" fragment="single">YNDFNNAVKDFGRIFYAEEGLTDLFPLQLRIFVSWETSSLVAKISQEENVPDFYKKACDIFNSAYNSLYIWDFSGQTTQLLVNDNARVPNESLGQPGKEVLLELQVHGLSDSMRGSQSNGMISDSSQMECSSDGDPVTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFZ8</accession>
    <name>A0A392MFZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010287">
        <property type="protein sequence ID" value="MCH86420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17768" checksum="7619CF072E7897C1" modified="2018-12-05" version="1" fragment="single">VMRSCNCFGVILGLRKFLFVIVLTGMSGDGGDLYLFGMEDLLRECFFYLKNVSLRSNVAERWTRRGIHSDRCLFFRGGCSPIGFRRRTTCSQEEFCSLISDCALIDMVCKVRYQLMRTLMLYNFAGYRGIYLVEHWHNDQTPCSANFHDLLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJI8</accession>
    <name>A0A392MJI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Serine/threonine-protein kinase PBS1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0008543</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012681">
        <property type="protein sequence ID" value="MCH87666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000032">
        <property type="entry name" value="Serine/threonine-protein kinase PBS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985">
        <property type="entry name" value="OS07G0668900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE PBL27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="12">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="146"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="146"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="193"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="222"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH87666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="285" mass="31618" checksum="55E38FE076EFAFD6" modified="2018-12-05" version="1" fragment="single">DEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTFDPNAGNQSNRGGSSTPRMRDDRRSSMADSVDSPDRARLGSPSTHRNSPDFRKREGRDPSELGRIDTGGGGSGRKWGLDDLERRDSQRDSPVNTXXXXXTPRNRDLDRERAVAEARVWGENWREKKRANAMGSFDGTNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK58</accession>
    <name>A0A392MK58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0007973</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011543">
        <property type="protein sequence ID" value="MCH87108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF40">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RGA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="6">
        <location>
            <begin position="11"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="NB-ARC" evidence="5">
        <location>
            <begin position="182"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH87108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="318" mass="35860" checksum="590EBBBE41B689F2" modified="2018-12-05" version="1">MASALVAGAFLSATIQTIAEKLSSTEFRGFISNTKFNYSLLAELKTTLFSLQAVLVDAEQKQFNDLPVKQWLDDLKDAIFDSEDLLNLISYDALRCKVENTPVDQLQNLSSSIKINSKMEKMCKRLQTFVQQKDILGLQRTVSGRVSRRTPSSSVVNESVTVGRNDDKDRLIDVLVSDCGTSRNNNFGVVAILGMGGVGKTTLAQLVYNDEKVEKHFDLKAWVYVSEDFDVVRVTKSLLESVVRNTTSTASKVWESDNLDILRVELMKQLMDRRFLFVLDDLWNDSYIDWNELVTPLFKGTQCMQLEVNNLVVVNTQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKU8</accession>
    <name>A0A392MKU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011147">
        <property type="protein sequence ID" value="MCH86894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786">
        <property type="entry name" value="DNA BINDING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="22600" checksum="BF374DF148D9F98A" modified="2018-12-05" version="1" fragment="single">MFSFTSLGGKVETGMNNRGGPPHFVISGQNYHRIGSLIPNEGELPKFAQLYIYDTQNEVQNXISHFRSLESTSPLDPLLVTEILAVMDEHNKLVQLFRMVRDYVQNNRSVPVKLRLFRDRQHDPRTYNVPELDEIAALIVGEIGDGEDGRDIVSQRLSYIRKNQTKIRSDFLAGIEEAVARGDFVASNIGARIVLPSSFTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLJ8</accession>
    <name>A0A392MLJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative AC transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013008">
        <property type="protein sequence ID" value="MCH87839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18828" checksum="85CCC00E6140F450" modified="2018-12-05" version="1">MYDQLYSKRQNRLSQKKLNDVMYVHYNLQLREYQVRKRSRESKSTSVDSVLLEHLLGDWIVDTTAQGSDGDKNISFGVELDDEYENDSVDYENGHARLLKGSHEQVTMADGAVGSSDADHANIDGATDDDSDLNYFDDDFXXXXXXXXXXXXXXXXXXXXXXXXXX</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLT7</accession>
    <name>A0A392MLT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011817">
        <property type="protein sequence ID" value="MCH87244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF12">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="5"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="275" mass="32309" checksum="9CCD9B91D586DF6C" modified="2018-12-05" version="1">MAEMDDRISAFPDEILSHIISFLPTEDAFETRVLSKRWWPLWYFDPSPNLDYDYQRFIKNGKNYPYFKSMVYATIFIRSEHQPIKSFRLRCDDNVIYQKVAMTWLTEAAEKGMEYLDVHLCDMKIHNCVLSVFSFRNLVVIKLKDVRVNVYSSAVDLPLLRILHLNKVYFVVTLDFLKVLDGCPILEDFKAKNMYILFSTNVYYDEEFKGLTNLVRADIDRLSDFDVPLRAFHNVEFLRLEKMYGMSPVFSNLTELEFVVGGCIVIESLSLPSYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM58</accession>
    <name>A0A392MM58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014223">
        <property type="protein sequence ID" value="MCH88461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5073" checksum="C9D9EC8961ACFEE2" modified="2018-12-05" version="1">MVPVEIRPGHIRFLPRGKDPAMPENQFPVVCLTFLRNIYNFGCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MME8</accession>
    <name>A0A392MME8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Starch branching enzyme I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009441</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014361">
        <property type="protein sequence ID" value="MCH88551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MME8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003844">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43651">
        <property type="entry name" value="1,4-ALPHA-GLUCAN-BRANCHING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43651:SF2">
        <property type="entry name" value="1,4-ALPHA-GLUCAN-BRANCHING ENZYME, CHLOROPLASTIC_AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16504" checksum="B7AF1211F6A86273" modified="2018-12-05" version="1" fragment="single">MPTLSMSYGFSLGQSIVGDKTIAFLLMDEEMYSSMSCLTDASPTIERGIALHKMIHFITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYEKCRRQWNLADTDHLRYKFMNAFDRAMNLLDDRFSFLASTKQIVSSTNNEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN13</accession>
    <name>A0A392MN13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide transporter PTR2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0009223</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013977">
        <property type="protein sequence ID" value="MCH88339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH88339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="30578" checksum="F9E2880B5299F647" modified="2018-12-05" version="1" fragment="single">CLDRAAVVSDAERKSGDYSNLWRLCTVTQVEELKILIRMFPVWATGIAFSAVYAQMSTMFVEQGTMMDTTIGSFRIPPASLSTFDVISVIFWVPVYDKFIVPIARKFTGKERGFSELQRMGIGLFISVFCMSAAAVLEIKRLQVAKELGLVDKPVPVPLTILLQIPQYFLLGAAEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTSLGNYLSSFILTLVTYFTTRGGKPGWIPDNLNEGRLDNFFWLLAGLSFLNMLIYIVAAKRYKQKKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN74</accession>
    <name>A0A392MN74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008612</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012808">
        <property type="protein sequence ID" value="MCH87734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13774" checksum="C48A216FC747B866" modified="2018-12-05" version="1" fragment="single">RVCCIGNQYQPQVSNHDQVLPTRDDHTLHRRAIMGLSSAVVLGLTWSDEQSARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKEALKEEVARLREKGKAINNNINKEPPPPPVVAPIRASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNP6</accession>
    <name>A0A392MNP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta-hydrolases superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014437">
        <property type="protein sequence ID" value="MCH88579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056652">
        <property type="entry name" value="DUF7750"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24930">
        <property type="entry name" value="DUF7750"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7750" evidence="2">
        <location>
            <begin position="54"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="16891" checksum="EA37285D14839B02" modified="2018-12-05" version="1" fragment="single">DAGLHFRPQQDLQQNFEQGDVSLQVKNGPVQQTSSTGSDQIGEENAASVDGEHGHVLQTAQVVTNMLDVTMPGTLTEEQKKKVLAAVGRGETLMNALEGAVPEDVRGKLKDAVAGILQARGSDLKFDRILSTQSPNLSPEKNNQEKLTGASSAEVRED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNY7</accession>
    <name>A0A392MNY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015767">
        <property type="protein sequence ID" value="MCH89246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="54"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="79"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9476" checksum="A307576E6BBF5686" modified="2018-12-05" version="1" fragment="single">CRLPFSLDRKALSFPLRGLVGRIRRTCLFNGLCFTLTLQSRRNEIPSLGNWMMPGDGPDSSTGGTSGAEVHSEPREPSAESSLAPSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNZ3</accession>
    <name>A0A392MNZ3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">WAT1-related protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009974</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the drug/metabolite transporter (DMT) superfamily. Plant drug/metabolite exporter (P-DME) (TC 2.A.7.4) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015428">
        <property type="protein sequence ID" value="MCH89081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030184">
        <property type="entry name" value="WAT1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31218">
        <property type="entry name" value="WAT1-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="7">
        <location>
            <begin position="32"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="20850" checksum="BF2727E8454B81F9" modified="2018-12-05" version="1">MQSISAPATENEATLPSSSTPSDLLFDVQKIIGCLYLMISVLILSSSVVLQAFALGDFPAPMSLSAMTSLFGGFMTAVVQVFEGEELKTGLQLVSFGDLIGFSILAGGVSGISLSFNGWALKKRGPVFVSMFSPIGTVCSVIFSVFNLGNTINIGSIVGMFLMFSGLYIVLWAKGKEGYADGGIVIESEFDADKPLLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ30</accession>
    <name>A0A392MQ30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009972</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015417">
        <property type="protein sequence ID" value="MCH89079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9868" checksum="C3E6E08C1093DDB7" modified="2018-12-05" version="1">MWVMKDYKLHSSWTKVLDLLIDYPTPNFFPICFTKSGDIIGTDGGVGLIKYNDKGHRLEYRNHSNNPDGTQVAVYPESLLSLPGDHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ55</accession>
    <name>A0A392MQ55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BRCT domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010566</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016627">
        <property type="protein sequence ID" value="MCH89666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd17738">
        <property type="entry name" value="BRCT_TopBP1_rpt7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044254">
        <property type="entry name" value="At4g02110-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47181">
        <property type="entry name" value="BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47181:SF2">
        <property type="entry name" value="BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BRCT" evidence="2">
        <location>
            <begin position="225"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="377" mass="42411" checksum="706A71A25490F54F" modified="2018-12-05" version="1" fragment="single">MEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEELVHLSKKLDTSAEEKLDAVDHDKKCEAMLPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPNDREHGLVDRTSVGNQTTKSSVKPANIIKSKKMKHNSSISEFKARAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQQ7</accession>
    <name>A0A392MQQ7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">alpha-1,2-Mannosidase</fullName>
            <ecNumber evidence="5">3.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010224</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glycosyl hydrolase 47 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010015923">
        <property type="protein sequence ID" value="MCH89329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044322">
        <property type="term" value="C:endoplasmic reticulum quality control compartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004571">
        <property type="term" value="F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904380">
        <property type="term" value="P:endoplasmic reticulum mannose trimming"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044674">
        <property type="entry name" value="EDEM1/2/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001382">
        <property type="entry name" value="Glyco_hydro_47"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036026">
        <property type="entry name" value="Seven-hairpin_glycosidases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45679">
        <property type="entry name" value="ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45679:SF6">
        <property type="entry name" value="ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01532">
        <property type="entry name" value="Glyco_hydro_47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00747">
        <property type="entry name" value="GLYHDRLASE47"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48225">
        <property type="entry name" value="Seven-hairpin glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13620" checksum="41CCC2401CC02AB3" modified="2018-12-05" version="1" fragment="single">DAGIGTSIDSFYEYLLKAYLLFGDEEYLYIFQEAYSAAMHYLYHDPWYVEVNMDSAAIVWPLFNSLQAFWPGLQVLAGDINPAIRTHAAFLSVWRRYGFTPEGFNLASLTVQGYILEVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRL6</accession>
    <name>A0A392MRL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010858</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017278">
        <property type="protein sequence ID" value="MCH89953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006527">
        <property type="entry name" value="F-box-assoc_dom_typ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017451">
        <property type="entry name" value="F-box-assoc_interact_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01640">
        <property type="entry name" value="F_box_assoc_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07734">
        <property type="entry name" value="FBA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box associated beta-propeller type 1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="226" mass="26285" checksum="58CF87C9607BC2B2" modified="2018-12-05" version="1" fragment="single">LHGFGYDDRIDDYKVISYVCILGELPDYGVVSLDLLEDYPLHPLWVIYSIRNNSWRKLDVDMPYSLDCFEGTQVYLDGVCHWFCEEETSAGSLVSFYLSNEVFVITPIPCYHDYLVFAERRINLVVLNEYIALISYHQDMNFHISILGEFGIEKSWTKLLIIRPLFPVERPIGVGTTGEIFYIRKDEELVWLDLSIQMIDEVGYKEKDCRIIIYKESKLPIGGISN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSQ6</accession>
    <name>A0A392MSQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011476</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018574">
        <property type="protein sequence ID" value="MCH90560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017281364" evidence="1">
        <location>
            <begin position="21"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="14149" checksum="9F2EF903E1D55A74" modified="2018-12-05" version="1">MNSRWIFIMIRLTILYSTKSPKLTTRSIMMSTIDRKNGYMVSAEQQEKVTVCSDWSVDDSEDVPETQVVNCASKYPTAIPETTQKIVILLDEDFDPQVIKQAWAAMEKGEKXYCWMRILTFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTE8</accession>
    <name>A0A392MTE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Type I inositol-145-trisphosphate 5-phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011203</name>
        <name evidence="5" type="ORF">A2U01_0011219</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">10/8</strain>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the inositol polyphosphate 5-phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018008">
        <property type="protein sequence ID" value="MCH90290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010018036">
        <property type="protein sequence ID" value="MCH90305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004445">
        <property type="term" value="F:inositol-polyphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034485">
        <property type="term" value="F:phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004439">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045849">
        <property type="entry name" value="IP5P_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000300">
        <property type="entry name" value="IPPc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45666:SF20">
        <property type="entry name" value="TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45666">
        <property type="entry name" value="TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22669">
        <property type="entry name" value="Exo_endo_phos2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00128">
        <property type="entry name" value="IPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Inositol polyphosphate-related phosphatase" evidence="3">
        <location>
            <begin position="2"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="22046" checksum="5AF9FBD6269EAA0C" modified="2018-12-05" version="1" fragment="single">MERKAAKDFCFRCQESNFNLDDSSTEEEDDNFPISVALATNQMKYSLVTCKQMVGIFVSVWMKKELIQYVGHLRICCTSRGIMGCLGNKGCISVSMSFYQTSFCFICSHLASGEKEGDELRRNLDVIEILKNTQFPKICKNQYSRMPDKILDHDRIIWFGDLNYRISLSRDDAKRLVEMKDWPSLFNKDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU41</accession>
    <name>A0A392MU41_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">23 kDa subunit of oxygen evolving system of photosystem II</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">23 kDa thylakoid membrane protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">OEC 23 kDa subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0011994</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in the regulation of photosystem II.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Plastid</location>
            <location evidence="12">Chloroplast thylakoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the PsbP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019624">
        <property type="protein sequence ID" value="MCH91070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009534">
        <property type="term" value="C:chloroplast thylakoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019898">
        <property type="term" value="C:extrinsic component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009654">
        <property type="term" value="C:photosystem II oxygen evolving complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1000.10">
        <property type="entry name" value="Mog1/PsbP, alpha/beta/alpha sandwich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016123">
        <property type="entry name" value="Mog1/PsbP_a/b/a-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002683">
        <property type="entry name" value="PsbP_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31407">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31407:SF6">
        <property type="entry name" value="OXYGEN-EVOLVING ENHANCER PROTEIN 2-1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01789">
        <property type="entry name" value="PsbP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55724">
        <property type="entry name" value="Mog1p/PsbP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="3" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="7" id="KW-0604">Photosystem II</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0793">Thylakoid</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="PsbP C-terminal" evidence="13">
        <location>
            <begin position="2"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00035638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00046272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH91070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11028" checksum="C5F754435B8D5964" modified="2018-12-05" version="1" fragment="single">VDYLLGKQAFFGQTDSEGGFDSNAVAVANILESSTPVIGGKQYFNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGTRKFVEDTASSFSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU79</accession>
    <name>A0A392MU79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CENP-C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011786</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CENP-C/MIF2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019213">
        <property type="protein sequence ID" value="MCH90863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000776">
        <property type="term" value="C:kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019237">
        <property type="term" value="F:centromeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051315">
        <property type="term" value="P:attachment of mitotic spindle microtubules to kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051382">
        <property type="term" value="P:kinetochore assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051455">
        <property type="term" value="P:spindle attachment to meiosis I kinetochore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028386">
        <property type="entry name" value="CENP-C/Mif2/cnp3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16684">
        <property type="entry name" value="CENTROMERE PROTEIN C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16684:SF11">
        <property type="entry name" value="CENTROMERE PROTEIN C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9517" checksum="D6614235B967B68D" modified="2018-12-05" version="1" fragment="single">ESKGKRLQQRKSLADAGTSWESGVRRSTRFRTKPLKYWKGERMMYGRVHKSLSTVIGVKCMSPGSDGKPKMKLRNGSAKLSNVCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV40</accession>
    <name>A0A392MV40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor MYB39-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0012268</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020223">
        <property type="protein sequence ID" value="MCH91341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000001">
        <property type="entry name" value="MYB-related transcription factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015495">
        <property type="entry name" value="Myb_TF_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10641">
        <property type="entry name" value="MYB FAMILY TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10641:SF1303">
        <property type="entry name" value="MYB TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="HTH myb-type" evidence="6">
        <location>
            <begin position="9"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="Myb-like" evidence="5">
        <location>
            <begin position="9"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="HTH myb-type" evidence="6">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH91341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10050" checksum="A5931FAB8B4F58E2" modified="2018-12-05" version="1">MGRAPCCDESGLKKGPWTPEEDRILVDHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEDEKTIINLHAVLGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWU3</accession>
    <name>A0A392MWU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021572">
        <property type="protein sequence ID" value="MCH91971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4548" checksum="3E1C5FD3FAD177CD" modified="2018-12-05" version="1" fragment="single">PLYEEVISLCLDLGELDAAVAVVADLETTGITVSDQTLDRVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXY3</accession>
    <name>A0A392MXY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022060">
        <property type="protein sequence ID" value="MCH92172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="18849" checksum="229234CA8C0367EF" modified="2018-12-05" version="1">MEEGSSALITKATLITSVPTIASKKKKTKTSTVKKGTSMPISDSPSASFNVPFGTVRNDDPSVVESVHVLSSKVVGSDPLSSPTKVVVDSVVCSPKETLPESDVVPDVSTSLSQPGQYVETIQDNPHIESEYESSSENENSQNKMVSDDDGEKILLEDVFLFFWFSFDLLWAMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYG7</accession>
    <name>A0A392MYG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADP-dependent alkenal double bond reductase P1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021568">
        <property type="protein sequence ID" value="MCH91969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032440">
        <property type="term" value="F:2-alkenal reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041694">
        <property type="entry name" value="ADH_N_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045010">
        <property type="entry name" value="MDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205:SF7">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16884">
        <property type="entry name" value="ADH_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidoreductase N-terminal" evidence="2">
        <location>
            <begin position="2"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8674" checksum="5DFE04D7C675B445" modified="2018-12-05" version="1" fragment="single">PLXGYGVSKVLESGHKDYKEGDLVWGLTNWEEYIIVPAAQILFKIEHTDVPLSYNTGILGWSGMTAYVGFFEVGTPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYS1</accession>
    <name>A0A392MYS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022774">
        <property type="protein sequence ID" value="MCH92473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="8728" checksum="7E0F6CFD0B4F381B" modified="2018-12-05" version="1">MQLLKIDSDGVVADRQYTQNNIGWKKPDDGFVGLNCEGAVIAAISAAGCGGVTRNSDGNFLTAFAANLGICSVVHAELWDIDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZU2</accession>
    <name>A0A392MZU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-binding protein SMUBP-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0013425</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022795">
        <property type="protein sequence ID" value="MCH92485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050534">
        <property type="entry name" value="Coronavir_polyprotein_1ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047187">
        <property type="entry name" value="SF1_C_Upf1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788:SF8">
        <property type="entry name" value="DNA-BINDING PROTEIN SMUBP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA2/NAM7 helicase-like C-terminal" evidence="5">
        <location>
            <begin position="28"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH92485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="19794" checksum="1C93179F453D7F79" modified="2018-12-05" version="1" fragment="single">GTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDTAGCDMDEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLRNKENSLKDIEISTVDGFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N034</accession>
    <name>A0A392N034_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022426">
        <property type="protein sequence ID" value="MCH92318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N034"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF463">
        <property type="entry name" value="REVERSE TRANSCRIPTASE TY1_COPIA-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6832" checksum="9C6842EA8E27CE92" modified="2018-12-05" version="1" fragment="single">MGFSDADWGVCPDSRRSITGYCFFIGQSLICWKSKKQLTVSKSSSEAEYRALASATCELQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0H6</accession>
    <name>A0A392N0H6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">DNA ligase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0013397</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent DNA ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022733">
        <property type="protein sequence ID" value="MCH92458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0H6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006273">
        <property type="term" value="P:lagging strand elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3260.10">
        <property type="entry name" value="DNA ligase, ATP-dependent, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.30">
        <property type="entry name" value="DNA ligase/mRNA capping enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050191">
        <property type="entry name" value="ATP-dep_DNA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016059">
        <property type="entry name" value="DNA_ligase_ATP-dep_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012308">
        <property type="entry name" value="DNA_ligase_ATP-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036599">
        <property type="entry name" value="DNA_ligase_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45674:SF4">
        <property type="entry name" value="DNA LIGASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45674">
        <property type="entry name" value="DNA LIGASE 1/3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04675">
        <property type="entry name" value="DNA_ligase_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117018">
        <property type="entry name" value="ATP-dependent DNA ligase DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56091">
        <property type="entry name" value="DNA ligase/mRNA capping enzyme, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA ligase ATP-dependent N-terminal" evidence="9">
        <location>
            <begin position="2"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-dependent DNA ligase family profile" evidence="8">
        <location>
            <begin position="130"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH92458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21426" checksum="4BE838F2F3020210" modified="2018-12-05" version="1" fragment="single">CFEDLDRLSVRLLESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEVKSPFEEAAQIVKKVYSVLPDYDKIVSALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0R2</accession>
    <name>A0A392N0R2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021838">
        <property type="protein sequence ID" value="MCH92074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0R2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2738" checksum="531A097E3493D19C" modified="2018-12-05" version="1" fragment="single">MPDGIVDFLFHPGKEAKGLVAFVHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N593</accession>
    <name>A0A392N593_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">RNA-binding protein 5-B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0015881</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028457">
        <property type="protein sequence ID" value="MCH94911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N593"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.10">
        <property type="entry name" value="Zinc finger, RanBP2-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13948:SF3">
        <property type="entry name" value="FI21118P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13948">
        <property type="entry name" value="RNA-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RanBP2-type" evidence="9">
        <location>
            <begin position="46"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="RRM" evidence="8">
        <location>
            <begin position="101"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH94911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16786" checksum="95A2B80223E77646" modified="2018-12-05" version="1" fragment="single">MMDKLGDDGLVVDGRKLFFEYSSKPTGGAGPDGALKPGHSHKGITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N815</accession>
    <name>A0A392N815_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031146">
        <property type="protein sequence ID" value="MCH95950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N815"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="344" mass="38437" checksum="E737DB85065A6288" modified="2018-12-05" version="1" fragment="single">MRKVGASSVEDWDIVLLSARAQVRFASSVASQDTVQMSARIGLLLATTEAEKSGNLIRGTCFINDVPLITMIDTGETHSYTSLDCVKRLNLRVSAMSGSMVIDTPANGSVTTTMVCVNCHLTIYGKHFGMDLVCIPLSKLDVFLGMNWLEFNRVYINCCDKTVMFPKPEESLNPRFMNVGQVETSLKESAQMFMMFASLKMEGESGIVELHVVCEFPCVFLDDVTDLPPEREVEFAIELVPGTSPVSMALYRMSASELNELKKQLEVLLEKMFVRPSISSWGASVLLVKKKDSSIRLCVDYQQLNKVTIKNKYPLARIDELMDQLVGARVFSKIDLRSGYHQIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB74</accession>
    <name>A0A392NB74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dedicator of cytokinesis protein 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017361</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DOCK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032169">
        <property type="protein sequence ID" value="MCH96375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08679">
        <property type="entry name" value="C2_DOCK180_related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027007">
        <property type="entry name" value="C2_DOCK-type_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026791">
        <property type="entry name" value="DOCK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23317">
        <property type="entry name" value="DEDICATOR OF CYTOKINESIS DOCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23317:SF76">
        <property type="entry name" value="LD20667P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14429">
        <property type="entry name" value="DOCK-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51650">
        <property type="entry name" value="C2_DOCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2 DOCK-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="15099" checksum="9CC5C40DC39F9820" modified="2018-12-05" version="1" fragment="single">FHAFDFRTTTRNEPFLQLFHCLYVYPLTVSLGRKRNLFIRVELREDDGDIRRQPLEAIYPRDPALGTSFQKWGHTQVAVGARVACYHDEIKLSLPAMWTPTHHLLFTLFHVDLQTKSEAPKPVSLFICST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBN7</accession>
    <name>A0A392NBN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cullin-3A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018213</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cullin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034390">
        <property type="protein sequence ID" value="MCH97220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1310.10">
        <property type="entry name" value="Cullin Repeats"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045093">
        <property type="entry name" value="Cullin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001373">
        <property type="entry name" value="Cullin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11932">
        <property type="entry name" value="CULLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00888">
        <property type="entry name" value="Cullin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cullin N-terminal" evidence="2">
        <location>
            <begin position="2"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Cullin N-terminal" evidence="2">
        <location>
            <begin position="155"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Cullin N-terminal" evidence="2">
        <location>
            <begin position="258"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="361" mass="41952" checksum="1C099DFF817DA5D7" modified="2018-12-05" version="1" fragment="single">MEAERRINEEWGRVSAYLDPSSESKIISVVVKQMIENHMHALVHMENSGLVNMLMDDNYEDLERMYNLFSRAPSGLTVVTDVMRSSIQDTGKQLIMDPERLKDPVAFAXHLLDLKNKYDNVITVAFNSDKIFQNVLNSAFECFINFNAKYVVHLRNSGLADMFKGDKYEDLKRLYDLFRSVPYGLVIVKDAMTSFIRDTGKDLIMDPERLKDPEAFVQRLFYLKDKYDKVIETAFNSDKIFQNVLNSAFEHFINFNAESVVHMENSGVAIMLMDDKYEDLEKMFSRVPYGLTIVKDVMTSVIRDTGRQLIMDPERLKDPVDLVQRLLDLNDKYDKVITEVFNNDKKFQIAFKSAFEYIINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCE0</accession>
    <name>A0A392NCE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035172">
        <property type="protein sequence ID" value="MCH97526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6684" checksum="1EA25191A5B77AAD" modified="2018-12-05" version="1">MRTSSVVNSMLQPPCYKCSRAAPGCYKACSMGGLSVAAIAVKIVAVAASIAPYLIMRLKVPKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCP0</accession>
    <name>A0A392NCP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033709">
        <property type="protein sequence ID" value="MCH96939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16063" checksum="62B1151C087EAC25" modified="2018-12-05" version="1">MESLKVRLSALDQKGEEEVLFEAELAKLHGVTSDIHSLSRMNASISSQQSRSLWLKEGDANSKYFHSVLAGRRRGNALSVIQVSEVTLEGLTPIRQVVVSHFASHFKATNVERPGVDNLQFKRLNQLESSSLTKPFTEAEVKSAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDC0</accession>
    <name>A0A392NDC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Receptor-like protein kinase HERK 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036031">
        <property type="protein sequence ID" value="MCH97830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000058">
        <property type="entry name" value="Receptor-like protein kinase FERONIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045272">
        <property type="entry name" value="ANXUR1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27003">
        <property type="entry name" value="OS07G0166700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27003:SF426">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN KINASE HERK 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="297" mass="33291" checksum="EA89599FF27F3A6D" modified="2018-12-05" version="1">MLSQFRHRHLVSLIGYCDENNEMILIYEYMEKGTLKSHLYGSGFPSLSWKERLEICIGSARGLHYLHTGYSKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKFQKKGQLEQIIDRTLAGKVKPDSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEDNSTNMIGELSPQVNNFNQDANVSSASAVQFESSTVDDLSGVSMSRVFSQLVKSEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH06</accession>
    <name>A0A392NH06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037759">
        <property type="protein sequence ID" value="MCH98499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13541" checksum="56F5C4619D063A70" modified="2018-12-05" version="1">MALENVRDEIAHGEITTESLPILEKVADLDMDNQGHDIENIIADDNIQENTRAKNQTRVDGTVTARRMITILVGPVQECVLETQLELKVTGQPTVHNVFRDTQGRALPLVAQRDMQITRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJ37</accession>
    <name>A0A392NJ37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HIPL1 protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041669">
        <property type="protein sequence ID" value="MCH99897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJ37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH_b-prop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19328">
        <property type="entry name" value="HEDGEHOG-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19328:SF13">
        <property type="entry name" value="HIPL1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="Soluble quinoprotein glucose dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="23757" checksum="CAC1AB108C3F51FE" modified="2018-12-05" version="1" fragment="single">RCDPYSGELFTIQSTARSVPVLCNSAIPANSSQSKASLHDFCSQSKTDFCNAFGGASNNESVCFEGEPVVLNNTDTPVIPPHGLCLEKIGNGSYLNMVAHPDGSSRAFFSSQMGKVWLATIPEEGSGGQLELDESSPFVDLTDQVYFDTQFGMMGMTFHPNFANNGRFFASFNCDKDKWSGCNGICSCNSNVNCDPSKIRTSNGAQPCQYQTVIAEYTAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJP9</accession>
    <name>A0A392NJP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cupin RmlC-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039981">
        <property type="protein sequence ID" value="MCH99315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37742">
        <property type="entry name" value="OS01G0810200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37742:SF1">
        <property type="entry name" value="OS01G0810200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7317" checksum="75712294C59680DC" modified="2018-12-05" version="1" fragment="single">VENSEVADIGYAEVTIGRDEVVVAASPANTAHALINIDPVRSAYFVGCQDSIINYNASSTDFNVWKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLA3</accession>
    <name>A0A392NLA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">T-complex protein 1 subunit eta-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021603</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043655">
        <property type="protein sequence ID" value="MCI00583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017289392" evidence="2">
        <location>
            <begin position="17"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="69"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10093" checksum="1C33BC7D7EA3EF63" modified="2018-12-05" version="1">MCFCVLGCTCCSICEGAPYGVDIATGGIADSFANFVWEPAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAASAMGGRGRGGGFRGRGRGMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNV4</accession>
    <name>A0A392NNV4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">beta-ketoacyl-[acyl-carrier-protein] synthase I</fullName>
            <ecNumber evidence="1">2.3.1.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0022558</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.41" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010046388">
        <property type="protein sequence ID" value="MCI01531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712:SF297">
        <property type="entry name" value="3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="POLYKETIDE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Beta-ketoacyl synthase-like N-terminal" evidence="3">
        <location>
            <begin position="38"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI01531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13086" checksum="17DFC06BD0A0DFC4" modified="2018-12-05" version="1" fragment="single">MAIRSTSRRVFSSIYRSISSSSSTDDKAFPPPPVVSSRRVVVTGLGMVTPLGCGVDKTWKQLIDGKCGVRALCLEDLKMKSFDTETQLATFDQLTSKVLAVVPTGTNPGEFNEEIWLNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NST2</accession>
    <name>A0A392NST2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol 4-kinase beta 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023312</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048618">
        <property type="protein sequence ID" value="MCI02280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NST2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8746" checksum="445162F0EA72540E" modified="2018-12-05" version="1" fragment="single">CAGSPKQRSEKSGTKPPLPINLQQFRKGAYHGSLDFVLSLCETSFGLVDVFPIEDRKRALHESLAEINLHLTEAHATGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P033</accession>
    <name>A0A392P033_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diaminopimelate decarboxylase 1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0025753</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056246">
        <property type="protein sequence ID" value="MCI04706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P033"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="entry name" value="Alanine racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022653">
        <property type="entry name" value="De-COase2_pyr-phos_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43727">
        <property type="entry name" value="DIAMINOPIMELATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43727:SF2">
        <property type="entry name" value="GROUP IV DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="PLP-binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00878">
        <property type="entry name" value="ODR_DC_2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn/DAP/Arg decarboxylase 2 N-terminal" evidence="3">
        <location>
            <begin position="23"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI04706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10376" checksum="FFB8A0FAD6AE6377" modified="2018-12-05" version="1" fragment="single">GIKVDEIMESVEKRPFYLYSKPQITRNVEAYKDALEGLTSIIGYAIKANNNYKILEHLRNLGCGAVLVSGNELKLALRAGFDPTRLVELYQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0N3</accession>
    <name>A0A392P0N3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0026654</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059160">
        <property type="protein sequence ID" value="MCI05601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010605">
        <property type="entry name" value="DUF1191"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33512:SF10">
        <property type="entry name" value="PLANT_F17O14-7 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33512">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF1191)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06697">
        <property type="entry name" value="DUF1191"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="293" mass="32368" checksum="21CB15A87373F747" modified="2018-12-05" version="1" fragment="single">PFSIAQVPFDDDISSRALDSVLQVYAFKAFSRPKTGVPYDAQLPNNLIGVKVSALRLRSGSLRTRGVQTYKEFQIPTGVVEQPYVERLVLVYHNLGNWSEKFYPLPGYTYLAPVLGLLSYSGVDLSADELPELDIRASDKPILIKFNDVKSAPYGSVPKCVYFDLHGSVQFDILLPDNVCSTVQQGHFSIVVESIAPTPXXXXXXXXXXXXXXKKKSKVWIIVGSLVGGCILLIILSLLVVRLIKIKKGMKIQELEWTADSNETLQMTSIGGTKAPLAIGTRTRPIIENDYIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P262</accession>
    <name>A0A392P262_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0026867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059836">
        <property type="protein sequence ID" value="MCI05814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P262"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9932" checksum="031CC35870F486F7" modified="2018-12-05" version="1">METTPTTQNLQIRAGNTCCVTGAENETTTTRNVGKAGCAVVDGRNGEKQKMNTRKRNAREEEGHQTCADLDEVVRRDDCILVAPPPPSSTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4X8</accession>
    <name>A0A392P4X8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">sucrose-phosphate synthase</fullName>
            <ecNumber evidence="2">2.4.1.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0027395</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>beta-D-fructose 6-phosphate + UDP-alpha-D-glucose = sucrose 6(F)-phosphate + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22172"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:57723"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="2.4.1.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.14" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010061528">
        <property type="protein sequence ID" value="MCI06336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046524">
        <property type="term" value="F:sucrose-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044161">
        <property type="entry name" value="SPS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46039">
        <property type="entry name" value="SUCROSE-PHOSPHATE SYNTHASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46039:SF5">
        <property type="entry name" value="SUCROSE-PHOSPHATE SYNTHASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="6">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI06336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="29047" checksum="1877868041957674" modified="2018-12-05" version="1" fragment="single">MVATKNGGPVDINRVLNNGLLVDPHDHQAIADALLKLLSEKNLWHECRKNGWKNIHLFSWPEHCRTYLTRVNACRMRHPQWQDNAPEDDVDVEESFNDSLKDVQDMSLRLSIDGEFVAGGGSNEDQVKRLLSKIRKQDSGSNNENMLLDNVPNKYPLLRRRRRLIVIALDSYDSNGFPDNKLIEVVQRIVKAVQLDPQTARVSGFALLTAMTMQETMEFLTSGNIQANEFDAIICSSGSEVYYPGVHTEDGKLSPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8V7</accession>
    <name>A0A392P8V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein CHUP1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069234">
        <property type="protein sequence ID" value="MCI08498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009707">
        <property type="term" value="C:chloroplast outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009902">
        <property type="term" value="P:chloroplast relocation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040265">
        <property type="entry name" value="CHUP1/IPGA1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31342">
        <property type="entry name" value="PROTEIN CHUP1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31342:SF7">
        <property type="entry name" value="PROTEIN CHUP1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14688" checksum="1A719B1E88BF9FBF" modified="2018-12-05" version="1" fragment="single">SSTSNSADARSNMIGEIENRSTFLLAVKADVETQGDFVMSLATEVRAASFSKIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKSDALREASFEYQDLMKLGKQVSTFTDDPKLPCXVALQNMYSLLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDK9</accession>
    <name>A0A392PDK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ufm1-specific protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073642">
        <property type="protein sequence ID" value="MCI09717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13329" checksum="07523B6C6B411727" modified="2018-12-05" version="1" fragment="single">TIQVSVLFNSLGSSSTSDAPIAEYLPVLEEARLIVVDIKLDVLCYSSKELPLRHAVSCLIIPSLTDQLNILQNFMLPNLLAQHPQVRQWVHLSSYIHFPWYYFHHDSKSQEDHFPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDV8</accession>
    <name>A0A392PDV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031381</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075643">
        <property type="protein sequence ID" value="MCI10288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3974" checksum="51BE566430687833" modified="2018-12-05" version="1" fragment="single">SSVEEAEMKAEKEGIRARQESHGKDSPETEDAETVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEK5</accession>
    <name>A0A392PEK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0030835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073730">
        <property type="protein sequence ID" value="MCI09746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18159" checksum="888C6B69B1956833" modified="2018-12-05" version="1" fragment="single">MLMDPLPNIAKVYSLLVQQERQTVVPIDESKLLAINGHNHYAGRGQSNRGRGYRGGGRSNGGRGKGNKLCTHCGQTNHVVDNCWKKYGYPPHMQHLQNNRAVNNCANTNGDDDESHTVTYEEENIDSEARKLFFTPAQHKALLALLQGSQSLPSHSINHVTTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFP7</accession>
    <name>A0A392PFP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon catabolite repressor protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031402</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075727">
        <property type="protein sequence ID" value="MCI10309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031615">
        <property type="entry name" value="Zfn-C6H2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15801">
        <property type="entry name" value="zf-C6H2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C6H2-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="81"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF15801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14822" checksum="6389316C5F538D72" modified="2018-12-05" version="1" fragment="single">MMCRYRVQSDKKVAVCSVHPSEQATLQCLGCLKAKIPVSKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNSGSGSINTSLSSSASSTSLTNGNVYPATVSQRNGGETWFEVGRSKTYTPSADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIG2</accession>
    <name>A0A392PIG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative 5'-AMP-activated kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0032950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081729">
        <property type="protein sequence ID" value="MCI11848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="24905" checksum="9AB5F1235B041867" modified="2018-12-05" version="1" fragment="single">QNEMVDGSVNDVISTTEVLQGDSSSSMYADSTPSLDECTSILVESVEDGLGELKDHFEEVNNVAEGDFRPTEVTTVDKDFSSSMPTEISGESPFESTLSGNSEREDTLMAKVVGDITFPMEVPSMENHSITSFNDPDLETGNKEFGHLEPSIDFSVEQKDRGALEGVDDYNNIITEDVPSTSEFSENKTVSIIRSADIGDIHLDTFSNLSLEKRVANFIQNGDLDPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZK7</accession>
    <name>A0A392PZK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0038239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103823">
        <property type="protein sequence ID" value="MCI17092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18214" checksum="B729554617230870" modified="2018-12-05" version="1" fragment="single">MEKGETIETMFTRFQTLVAGLQVLKKSYTTYDHIQKILRCLPIEWRPKVTAIEECQNLKTMAIETLISNLRSHEMVLNADATALKKSKSVTLQSTKISSKVLKAKVNEVQQESSVDDQEDGSDEDELALFTKFQQWSRLNKKNFRGNSSRSNAKMIRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1Z4</accession>
    <name>A0A392Q1Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0039249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108499">
        <property type="protein sequence ID" value="MCI18098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009291">
        <property type="entry name" value="Vps62"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48152:SF3">
        <property type="entry name" value="DUF946 FAMILY PROTEIN (DUF946)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48152">
        <property type="entry name" value="F1C9.34 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06101">
        <property type="entry name" value="Vps62"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="15913" checksum="431EFA1F2DCF2C51" modified="2018-12-05" version="1" fragment="single">MVSKPSPRSAGPPAIRFLIRPSTIYSRTPSPIVLGARGVLRSLTSVARWPEYVFISDGFATGIIDLGGGLLVSQISTFNKIWTTYEGGPDDLGVTFFEPTGLSEGFFMLGCYCQPNNKSLHGWILVAKDISLTTNEALKKPLDYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USK2</accession>
    <name>A0A392USK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963828">
        <property type="protein sequence ID" value="MCI78998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5884" checksum="905E46C314201E90" modified="2018-12-05" version="1" fragment="single">MTRSVKVGMLKLTNDFLEEVVEKQKTDARLMKYKTLIEQGKKVDIEIDVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT13</accession>
    <name>A0A392UT13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010949712">
        <property type="protein sequence ID" value="MCI78383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6054" checksum="6D6D9E548D0EDA8D" modified="2018-12-05" version="1" fragment="single">VRGRTISYAPDVIDETFGFRQADYCWASQQRASAHMDEEYADMLQTLALPGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW06</accession>
    <name>A0A392UW06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010949474">
        <property type="protein sequence ID" value="MCI78370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3596" checksum="482FB1C8429F5812" modified="2018-12-05" version="1" fragment="single">IMAAARTNAQIAEALVTLTNIVARDNDPGRDGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX44</accession>
    <name>A0A392UX44_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0101877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999461">
        <property type="protein sequence ID" value="MCI80606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="64" mass="7625" checksum="B845E85BD8EB044E" modified="2018-12-05" version="1" fragment="single">MTVKKRIVGLLREYVDIFAWSYRDIPGLDPEIVKHRLPLKPECPPMKQKLRRTHPDMALKIKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXT3</accession>
    <name>A0A392UXT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010962933">
        <property type="protein sequence ID" value="MCI78960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3763" checksum="C8DC6E645E18EDE2" modified="2018-12-05" version="1" fragment="single">QCRKVKEVGDLMTGKLATEAPVNGDRNYNGPKVAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWK6</accession>
    <name>A0A392LWK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ubiquitin-conjugating enzyme E2 25-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000011</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000007">
        <property type="protein sequence ID" value="MCH79265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061631">
        <property type="term" value="F:ubiquitin conjugating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23837">
        <property type="entry name" value="UBCc_UBE2O"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000608">
        <property type="entry name" value="UBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46116">
        <property type="entry name" value="(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46116:SF41">
        <property type="entry name" value="UBIQUITIN-CONJUGATING ENZYME E2 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00179">
        <property type="entry name" value="UQ_con"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00212">
        <property type="entry name" value="UBCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50127">
        <property type="entry name" value="UBC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="UBC core" evidence="4">
        <location>
            <begin position="234"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH79265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="481" mass="54640" checksum="49233E77431C1EC6" modified="2018-12-05" version="1">MKRHFDVFSNRERPSAAISPLPQSPPIINQHPHHRPPPPPPVTELGILNMGAPAFTLVNVAPSLTTTIVDWYRSDIVLLLPTPQQLHRHRSPTGVRVSTILLLEWNKTETGMAIAQDLFMFFDKFRVVIDISDDDDSDDDNDLVIIGEKPPRKIINKGKTILCDDDDVIDVDDSNDDVVIIGEKVVNKSSNHANFKDEILNKFSSFKHFDIFSGSPSDHAFLSNKFLLNEHKKNWAKRIQKEWEILKNSMPDSMFVRVYESRMELMTAVIIGAEGTPYHDGLFFIDLCLPYDFPNRPPMVRLHNPCASSKLNPNIGARGSICLSLLNTTTGKKNECWRPRSTILQVLVSIQGLVLTTDPYLNGPFDCYRGLSTRSESLNNIIRTYNENAFLDSLRTMIHVIRRPLKNFEDFVVGHFLNRAHDILSACKAYSKGVQVCSLVKSESWKFDRQTHKSLPEYFTNTLCCLMKELANEFARIGAMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWP3</accession>
    <name>A0A392LWP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000078">
        <property type="protein sequence ID" value="MCH79381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19692" checksum="73CABAD1DE25A484" modified="2018-12-05" version="1">MCMSLNERRVRCPSVCLLCSEADEDDWHILFECKLIKDCWNVVGLDGMLQQRLRWCSSAKELLMDICRNEGCCIAGRIAMLVWTAVNLLRKRCSHSHSTRRSEHNLRWEKPGQGLLKCSVDAGFHVMEGVTKGEAAALLEATDMARNRNSEHAIFEKDSQMVVEANHSRIVET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXC6</accession>
    <name>A0A392LXC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000168">
        <property type="protein sequence ID" value="MCH79525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22608" checksum="4D81DD5484A562EF" modified="2018-12-05" version="1">MMSGLRVNFHKSMLVGVNIPDSWVQAAISTLRCKVGKIPFPYLGLPIGGDPRRLGFWEPVLSRIQKILSGWKSRSLCFGGRLILLKSVLTFLPVYALSFFKAPSSTISSFESILNKFVWGGSEDFSKTSWISWKSICLHKEYGRLGVRQLREFNIALLGKWXWRMLVDRGGLWFRVLAARYGLERGCVRAGGGLGLLGGGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXK1</accession>
    <name>A0A392LXK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phytoalexin-deficient 4-2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000401</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000254">
        <property type="protein sequence ID" value="MCH79648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676">
        <property type="entry name" value="DUF4219 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676:SF28">
        <property type="entry name" value="ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="263"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="457" mass="53233" checksum="888B83AACE35B1C5" modified="2018-12-05" version="1">MELFLRSQDNNMWSVIEVGEYTPPPAKDSTTPKPQEDWTIQESDRVLLNTKAKLFIKSALNREEHDRIMECKTAKEMWYTLQNHHEGSSRVKETRIDIGVRRFELFEMKEDETIDQMYGRLTVIINELNSLGKRYTPHERVRKILRSLPKSWRHIVTAITEAKDLKELKLEDLIGSLRVHESILQEDKPKKLMIALESQTKECSQNIENLCDEKSLQEDDEEEFAFISRRIQRLMIRRNQMKNSFQGKRNNLKTEVDLNKIQCYGCNQFGHYKNDCPKTKQGRNSYQKKSFLTTWNDLDEPLEKEEQQEANMCLMTHSNQGEECLLATKKKSWYLDSGCSRHMTRDRQNFLSFEEKEGGSVTFGNNEQASIKGKGIIGKVNSAKIENVHYVEGLKHNLISIGQLCDDGLKVIFKPNTCEIRKSGKVLFNGSKRKNVYVLYLDELPAESCFISLEKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ35</accession>
    <name>A0A392LZ35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pre-mRNA-splicing factor RSE1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000877">
        <property type="protein sequence ID" value="MCH80287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058543">
        <property type="entry name" value="Beta-prop_RSE1/DDB1/CPSF1_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050358">
        <property type="entry name" value="RSE1/DDB1/CFT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10644">
        <property type="entry name" value="DNA REPAIR/RNA PROCESSING CPSF FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23726">
        <property type="entry name" value="Beta-prop_RSE1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RSE1/DDB1/CPSF1 second beta-propeller" evidence="1">
        <location>
            <begin position="305"/>
            <end position="685"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="804" mass="88383" checksum="4EE408F3FD9FFDFE" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZU5</accession>
    <name>A0A392LZU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Lysine-specific demethylase 3B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0001306</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001168">
        <property type="protein sequence ID" value="MCH80536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032454">
        <property type="term" value="F:histone H3K9 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045109">
        <property type="entry name" value="LSDs-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018866">
        <property type="entry name" value="Znf-4CXXC_R1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549:SF11">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10497">
        <property type="entry name" value="zf-4CXXC_R1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="9">
        <location>
            <begin position="156"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="84"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH80536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="540" mass="61625" checksum="DAF53E29850B841F" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M010</accession>
    <name>A0A392M010_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001353</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001220">
        <property type="protein sequence ID" value="MCH80583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M010"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5606" checksum="AFCF4C3D82A1AB4C" modified="2018-12-05" version="1" fragment="single">SCRRRQPTRVVVPHRQSTRVVVASMNICVAVMSSSTTPLMKLVSSKLNRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0I6</accession>
    <name>A0A392M0I6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001596</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001532">
        <property type="protein sequence ID" value="MCH80822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0I6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="64"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="299"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="299"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="383"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="403" mass="46963" checksum="59D3FF32EBF2FB15" modified="2018-12-05" version="1">MTMTETTEMEDDNGTHQNNAPTTTEIARTTPLETYDGTKDPDEHLEHIDTILDYYQAPGAIKCRLFVLTLKGPTMTWFKGLEDDSIDSWRELCRVFSSHFKARKRQPKTMASLSNIIQGKEESLRDYIERFTKEAIEVKGAHDTLKCYIFEKGLRSDTKFKEKLGLKELKDMQDILSRAQNYINYEEKMLREKPEKVKNPPRKDERAREERGRRTPKGGYHEYTLLNATREKILQDCINTEFADAGIQPPKELRENPRTDKSKFCRYHRSTGHETEDCIQLNDTIENLVRRGKLSRYTLERNREDHKRGKRDSPNKHARVNESPKRKCSPERRPPPEERVEVINSKEDDDSEEEKYPGKRPFVATVIGGPYGFKGRTKGTENAQRHVEAQLLPHEESHRLRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0V3</accession>
    <name>A0A392M0V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein (TIR-NBS-LRR class)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001661</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001608">
        <property type="protein sequence ID" value="MCH80885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18150" checksum="7D036E30E051E7D1" modified="2018-12-05" version="1" fragment="single">LNEVGTSHASQISDLSLRSLLIRIGSCHIVIDNLGKSLSQGLATNSSDYFLLGDNYRSWLAYKCEGPSIYKRDIVMSFNDEDWQSVLSNLGAGDNVEIFIAIGHGFAVKETTVYLIYEQSNDMEVQPSVIAPYDPVYGTNTTTNGGMFGISRKRIPLIPGLHENT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1P5</accession>
    <name>A0A392M1P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transcription factor UNE12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0001980</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002001">
        <property type="protein sequence ID" value="MCH81196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.280.10:FF:000044">
        <property type="entry name" value="Basic helix-loop-helix transcription factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045843">
        <property type="entry name" value="IND-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16223">
        <property type="entry name" value="TRANSCRIPTION FACTOR BHLH83-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16223:SF200">
        <property type="entry name" value="TRANSCRIPTION FACTOR UNE12-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00353">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BHLH" evidence="8">
        <location>
            <begin position="30"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="108"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="125"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH81196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21373" checksum="1F8AD1D8FB0885FA" modified="2018-12-05" version="1" fragment="single">VFHGQPMHTNVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEQSNKSSGGDQEEGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2F4</accession>
    <name>A0A392M2F4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0002196</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002267">
        <property type="protein sequence ID" value="MCH81409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="299"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="8">
        <location>
            <begin position="450"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH81409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="758" mass="85246" checksum="A47F5E79E104E68F" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2I3</accession>
    <name>A0A392M2I3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002263</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002347">
        <property type="protein sequence ID" value="MCH81476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2I3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="198"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="330"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="330"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="436" mass="49298" checksum="A7B052519C31A0C1" modified="2018-12-05" version="1" fragment="single">AHQRPAATTRPPNQRIGEESASLEEQFSPAETLQVRDTSSSSQQHSSKAPCSGTARTASTAKQEARPHSPREDRVSPTAKKGKQAVRSEHRHQSPQGLKLMTMHAPSSSHAQHGNNRGKRSPTPPRYDNNSTPSLEGSDEEATRCPLSRGIIRSPIPSGFEKPPSLGTYDGQTDPDEHVDNINTILDFRRVSGAIRCRLFPTTLRKEAMAWYQSLAPQSVSSWKDLTEQFCRHFTASRRHSKTVATLEAIYQVKDESLRNYIERFNKEAVQVNTTDDMKKYLLERGLRPRSDFAKVVGIEKPRTLDELLAKAQAYMQYEEVEVADAIRHSRLEDSHPAREPSHKGGDKKRNDRPREPRGPPSTFTNYTPLIASRETILAEVATADFRASGIKFPKQVPLKPYHDRNKYCRYHKLYDHVTEECIQLKDAIEIMIRDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Y1</accession>
    <name>A0A392M3Y1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002751">
        <property type="protein sequence ID" value="MCH81773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000996">
        <property type="entry name" value="Small kernel1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF347">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="97"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="319" mass="35157" checksum="25BE1BF0AF79C740" modified="2018-12-05" version="1">MINGCVQNGAPEDALILLREMQSKDRIRPNEISLVSVLPACGLLAGLIGGKQVHAFSIKMELNGYISLCNALTDMYAKCGSLDYARRVFHNGSYFKDAITWGSIISAYGLHGKGEEAVTTYYEMLQQGIKPDMITVVGVLSACCKAGLVDEGLSIYNSLTTKYEMKPSVEICACVVDLLGRSGQLNQALEFIKGMPINPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYIXLSNTYASYRRWDEVTEVRTMMKQRGLKKVPGISWITISRKTHFFTVADKAHPSSRSIYEMIDDLVSVMTDGCTDIDILT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4F2</accession>
    <name>A0A392M4F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002080">
        <property type="protein sequence ID" value="MCH81264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4778" checksum="3B555A6C80F551A8" modified="2018-12-05" version="1">MGKEADEAKSLPTSSSDAATGIVEEIAEITPPVQFPLPCSFALITD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4F8</accession>
    <name>A0A392M4F8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003449">
        <property type="protein sequence ID" value="MCH82282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006527">
        <property type="entry name" value="F-box-assoc_dom_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07734">
        <property type="entry name" value="FBA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box associated beta-propeller type 1" evidence="1">
        <location>
            <begin position="46"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="230" mass="26141" checksum="1EE5DC3FC9E36B78" modified="2018-12-05" version="1">MSSIPDASXXXXXXXXXXXXXXXXXXXXXXXHELGEDELGGELFESFWEMYSLSSNTWKKLDVDIPSFMDCCGGTVYMDGVCHWLCDDCVVSFYLSNEEFFITPTPDDNFDLWINLAVLNRSIALFSYDAKGTSFHISILGEFXMKESWTKLLIIGPLSCVKDPISVGTKGEIFFIRKDKELVWLDLSTQVITELGYKGMATELGYHGFCCFPQIIIYKENIEKNDLWPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4P5</accession>
    <name>A0A392M4P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003143</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003540">
        <property type="protein sequence ID" value="MCH82340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF498">
        <property type="entry name" value="DNAK FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="3">
        <location>
            <begin position="45"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="285"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="767" mass="85874" checksum="9D1DEFC1D98F4C0D" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M569</accession>
    <name>A0A392M569_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exocyst subunit Exo70 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0003258</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Component of the exocyst complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the EXO70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003712">
        <property type="protein sequence ID" value="MCH82451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005546">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.170">
        <property type="entry name" value="Exocyst complex component Exo70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004140">
        <property type="entry name" value="Exo70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046364">
        <property type="entry name" value="Exo70_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542">
        <property type="entry name" value="EXOCYST COMPLEX PROTEIN EXO70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542:SF180">
        <property type="entry name" value="EXOCYST SUBUNIT EXO70 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03081">
        <property type="entry name" value="Exo70_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst complex subunit Exo70 C-terminal" evidence="5">
        <location>
            <begin position="133"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="22"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU365026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH82451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="279" mass="32075" checksum="4D7027C03125EA5A" modified="2018-12-05" version="1">MDSLLQPSNDFSRMMRQFASCTNALQQENLNLIDRLMELVKEYNQDMSELHLLGKCEFVMDTLPSGKMHNLHEIVRLMVAAGYEKECCDVYSSWRGVFLQDFLINKIFGLPEAKNNTENEHEREQYLNTMFQRWITSSDVAMKILFPIEQKLCNRVFSGFSSAASHCFIEVCQKAMFQLLDFADAVASGVPTKWRLFKMLDIFEQLRNLIPKLQSLFPDSTLLNEAIAIQNRLGESSRDLLXXXXNIIFRVPKPKQGVPPFGRLHPMTAEVMSYVSSVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5F8</accession>
    <name>A0A392M5F8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003431</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003938">
        <property type="protein sequence ID" value="MCH82620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5F8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="213"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="340" mass="37577" checksum="58B3927C2FE6B45E" modified="2018-12-05" version="1" fragment="single">VVDPNTLTKFEKDLVQFLEFFDLIPFRDLLKAKGDDTTLDSVLRKMSRATDAQWKAHLAATRRQRAAVNQPNSVPANTPLVAENSPAIKRGIVDIEENVGGSHVGDEILDALAVDAKSPKNKKAKKEKVVSKDFGPVEKISATEGRAKTFIPTESSHLPLSLSVDAAEFIDDHYSFNWEDEKIQNMDLEEATTLKLSHELRAILMGRVVTHKAAALAREMKARRAELDEANGKMKEAKDSARAFEDDLKKEERTRVNEVNTLLEDAEQALKLKDKEIKEVDPFKVIKDGNLVDQEVPATPGPSGAPTEGEVKVAGENPDVIIDVAQPGFRTFLVYGDLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5L4</accession>
    <name>A0A392M5L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative white-brown complex protein 30-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0003437</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003945">
        <property type="protein sequence ID" value="MCH82626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043926">
        <property type="entry name" value="ABCG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050352">
        <property type="entry name" value="ABCG_transporters"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041:SF107">
        <property type="entry name" value="WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19055">
        <property type="entry name" value="ABC2_membrane_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="355"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter family G" evidence="7">
        <location>
            <begin position="45"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF19055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH82626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="401" mass="44893" checksum="D88BD91782AF4344" modified="2018-12-05" version="1" fragment="single">EMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKEVEEYFAGIGIPVPDRVNPPDHFIDILEGLEKPTSGVTVETLPVRWMLHNGYPVPPDMLHLADQIAAPSSDATNVTHTSKATDETSDQSFFVELWEDFKSNIRTQKDHIEAIFLRTKDLSDRKTPNVARQYRYFLGRVGKQQLREANLQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVISVSLLCKIAALRSFTTDKLQYWRESAAGISSLAHFLSKDTIDLFSTITKPVVYLSMFYYLSNPRSSFESNYIVLVCLVYCVTGMAYALAVFFQPSPAQLWSVLLPVVMTLIAKQNRDTAFMKILVQLCYPKWALEAFIIANAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7I0</accession>
    <name>A0A392M7I0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004598">
        <property type="protein sequence ID" value="MCH83065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7I0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8730" checksum="6A6F2C964B956D07" modified="2018-12-05" version="1" fragment="single">GERSVDAVGTRFFLGKNKFRNDRTARMSRDVLEVECSRLSDVVRSGMNLSNKLWELLEENLLDRVFVVGTSLRLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M819</accession>
    <name>A0A392M819_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004463</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005514">
        <property type="protein sequence ID" value="MCH83637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017286766" description="RNase H type-1 domain-containing protein" evidence="2">
        <location>
            <begin position="17"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="201" mass="22553" checksum="8F92ED622E87F87D" modified="2018-12-05" version="1">MYLTIFSILPLCRVFAFCENQTTTLEFKDFSDWLVYKISHLNEKDMSYVVTVIYGIWYARNQQVFEFKDIEDSIVIDKASAYIKEYQMANTTEEGRWGLGDAFCDSEGFFVASATWEMTGCVDPAMAEACAIYQAXXXXXXXXXXXXXXXXDSNIALVKGTGRNPRSYLGTSFGVFNVINSALGIVIFVMSEGKPIKPPTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8B1</accession>
    <name>A0A392M8B1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein arginine N-methyltransferase 1.5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004346</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005328">
        <property type="protein sequence ID" value="MCH83521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8B1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016274">
        <property type="term" value="F:protein-arginine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025799">
        <property type="entry name" value="Arg_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035247">
        <property type="entry name" value="PRMT5_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10738">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10738:SF0">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17285">
        <property type="entry name" value="PRMT5_TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRMT5 TIM barrel" evidence="2">
        <location>
            <begin position="35"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10938" checksum="82D07B95ADACC879" modified="2018-12-05" version="1" fragment="single">MCPNFFIVLQACVLPTPKGNSCANYARFPFGMSDDDYSPGSNDLVDSWKTWNSFRLLCDYHNQLMVVLDIMRVLPPENSQKRWYGEPVTAAILDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M932</accession>
    <name>A0A392M932_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tesmin/TSO1-like CXC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004832</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the lin-54 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006089">
        <property type="protein sequence ID" value="MCH84002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M932"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005172">
        <property type="entry name" value="CRC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033467">
        <property type="entry name" value="Tesmin/TSO1-like_CXC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044522">
        <property type="entry name" value="TSO1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46159">
        <property type="entry name" value="PROTEIN TESMIN/TSO1-LIKE CXC 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46159:SF12">
        <property type="entry name" value="PROTEIN TESMIN_TSO1-LIKE CXC 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03638">
        <property type="entry name" value="TCR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01114">
        <property type="entry name" value="CXC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51634">
        <property type="entry name" value="CRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRC" evidence="5">
        <location>
            <begin position="11"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="261"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="261"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="292"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH84002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="303" mass="33079" checksum="D2F3B801096DA558" modified="2018-12-05" version="1" fragment="single">RKSEPVGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEVGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSASIGIEGEIEEEETETSDKGVEEKAIQKTEIQNIEDHPESSLVSTPLQLSRPLLPMPFSSKGKPPRSFVTTITGSGYFASQKLAMPNSLWSQSKPFQTIPDDEMPEILRGDSSPIACIKTSSPNGKRISSPNCEMGSSPARRGGRKLILQSIPSFPSLTSHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M942</accession>
    <name>A0A392M942_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AT-rich interactive domain-containing protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006111">
        <property type="protein sequence ID" value="MCH84012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042293">
        <property type="entry name" value="ARID4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46694:SF5">
        <property type="entry name" value="ARID_BRIGHT DNA-BINDING DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46694">
        <property type="entry name" value="AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="28316" checksum="010583AA411EC9C5" modified="2018-12-05" version="1" fragment="single">IRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLQNHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLMXPAPSRKRSEPCSRIKSINASGVEVDRQKLSFGAMRPIPQSHRQKLLPFSGFFEVERYDRDHGKSNQLLAPIKHNGLGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9B9</accession>
    <name>A0A392M9B9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0004625</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the DExH box helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010005772">
        <property type="protein sequence ID" value="MCH83799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9B9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd17917">
        <property type="entry name" value="DEXHc_RHA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000526">
        <property type="entry name" value="DExH-box ATP-dependent RNA helicase DExH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934:SF229">
        <property type="entry name" value="DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="3"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00060772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH83799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15573" checksum="935698C6BA14A6A3" modified="2018-12-05" version="1" fragment="single">MMSMYDPLYKVIVISGETGCGKTTQLPQYILESEIEAARGALCNIICTQPRRISAISVSERVAAEHGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9N7</accession>
    <name>A0A392M9N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003727</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004371">
        <property type="protein sequence ID" value="MCH82914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240:SF15">
        <property type="entry name" value="GAG-PRO-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240">
        <property type="entry name" value="OS08G0508500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="473" mass="54347" checksum="76E530BCB74000FD" modified="2018-12-05" version="1" fragment="single">SARQIEKLDAEKDRDTIQKAIEEGRLIFEDKPKMKVYENPFHVAANYAEPEYDVNMVNATIHQEAFMVEAVFAEEETVDHIIEKFEDETLNKIYPENEETLSEFLQKKCSFNQEVMLYPRCSSIFDKAAAKAFDKSNIKKIFDISEAKKEVANEEGPWRNQHDKKGTRFFDKKKKRSLQKKREYGFDHNLKPYSGFQKRNTYTPPNNVPIGKWFVGDKKFRNRKSISLEGSQGSNQLSSEEVTSSRNETVTHKEKAKSTKATEEDSATENFETGFPDEIEEICQVAMISVLPAEYADKSFGVDELEDLFQQTHIVDEPSMIAYVPKWIVKASSWNSAFFNKPTNQMKSHLKTLFIKAEINEDFKVNKVLIDGGAAVNLMPESFLSKIDKSKKDLMDHNIVITDFNGNSAKSLGVIVVKLKVGSVTRSTVFIVVPPKLIITCYLEGNGYMLWVQFHQPCTKQWYFGEKMTMWNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBB8</accession>
    <name>A0A392MBB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0005231</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006753">
        <property type="protein sequence ID" value="MCH84399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004714">
        <property type="term" value="F:transmembrane receptor protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.430">
        <property type="entry name" value="Galactose-binding lectin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045272">
        <property type="entry name" value="ANXUR1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34590:SF12">
        <property type="entry name" value="CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34590">
        <property type="entry name" value="OS03G0124300 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Malectin-like" evidence="11">
        <location>
            <begin position="19"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH84399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="294" mass="33060" checksum="92DC71B888640B2E" modified="2018-12-05" version="1" fragment="single">MVRFHFYSFSSPANLYTAKFNVSVPGFSLLQNFDAKNTTNPGLIKEYLVKIIRKRFKITFTPQNSSFAFVNAIELFMLPIHLIPDSVARFTYTSSIGRALFPYGGGLLSRALETKHRLNVGGQPVNRDNDNLSREWLQDDSYITDPQNAKNSTYFGGTIKRKADDXXDGPYSNQYTAPDVVYQTAKETINGSNGLSISWSVPVEKNTDHFLRLHFCDIFNTQTQLTIFNLNIYDQLVISTVNRDTDVSSPYYYDFVVRSDGSGLLKVSVVPNTTAAKPNAFLNGLELMKVIESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBN9</accession>
    <name>A0A392MBN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Elongation factor 1-alpha</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007017">
        <property type="protein sequence ID" value="MCH84563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025525">
        <property type="entry name" value="hAT-like_transposase_RNase-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272">
        <property type="entry name" value="BED FINGER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272:SF184">
        <property type="entry name" value="OS03G0311250 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14372">
        <property type="entry name" value="hAT-like_RNase-H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="hAT-like transposase RNase-H fold" evidence="2">
        <location>
            <begin position="2"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="132"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="34167" checksum="D3505851A2FD24EB" modified="2018-12-05" version="1">MYMFEVLGIGMAIKNMCNSGDVRISLMAKNMRKKYDKFWGNANSLNMLLLVGLVLDPRHKVKFVNWCANKNYNGEEADYLIDKLKSCLNLLFEEYNGVLEVSHTNSKKGGYNDPYGFNKFYQSSECKKSETELSKYLDEVLESGGDLDVLNWWKLNSSRFPIIANIARDVLAIPVSTVTPEFALSIGGRVLGSYQSSLPPITMEALICTQDWLMGTASPLLTNXELENLEKIEQGVAGVGVAGVLCCLMHVNKYYDDKSWLVASFIQMADEDVPWQDSAPVTYTIDTVNVMERCSFSVNEAYKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBR8</accession>
    <name>A0A392MBR8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">protein-serine/threonine phosphatase</fullName>
            <ecNumber evidence="5">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0005377</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20629"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14 19">
            <text>O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:47004"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="15">Interacts with RAP74.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010006990">
        <property type="protein sequence ID" value="MCH84545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008420">
        <property type="term" value="F:RNA polymerase II CTD heptapeptide repeat phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009651">
        <property type="term" value="P:response to salt stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd17729">
        <property type="entry name" value="BRCT_CTDP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10190:FF:000014">
        <property type="entry name" value="RNA polymerase II C-terminal domain phosphatase-like 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039189">
        <property type="entry name" value="Fcp1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23081">
        <property type="entry name" value="RNA POLYMERASE II CTD PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23081:SF36">
        <property type="entry name" value="RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="BRCT domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0539">Nucleus</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0678">Repressor</keyword>
    <keyword evidence="9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="11" id="KW-0804">Transcription</keyword>
    <keyword evidence="10" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BRCT" evidence="16">
        <location>
            <begin position="69"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00063107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH84545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18705" checksum="55630A148BEA58CA" modified="2018-12-05" version="1">MERYHFFASSCRQFGFDCKSLAETKSDENETDGALAKILEVLKQVHCTFFEKLQGDLVDRDVRQVLSSVRGEILSGCVIIFSRINHLALPTLKRIAEQMGATCLTELDPTVTHVVATDAGTEKARWAVKEKKCLVHPRWMEAANYFWQKQPEENFIIKKTTTHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCV2</accession>
    <name>A0A392MCV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AP-2 complex subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005773</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007629">
        <property type="protein sequence ID" value="MCH84935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030131">
        <property type="term" value="C:clathrin adaptor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.10">
        <property type="entry name" value="TATA-Binding Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003164">
        <property type="entry name" value="Clathrin_a-adaptin_app_sub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008152">
        <property type="entry name" value="Clathrin_a/b/g-adaptin_app_Ig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013041">
        <property type="entry name" value="Clathrin_app_Ig-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009028">
        <property type="entry name" value="Coatomer/calthrin_app_sub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012295">
        <property type="entry name" value="TBP_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02296">
        <property type="entry name" value="Alpha_adaptin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02883">
        <property type="entry name" value="Alpha_adaptinC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00809">
        <property type="entry name" value="Alpha_adaptinC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49348">
        <property type="entry name" value="Clathrin adaptor appendage domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55711">
        <property type="entry name" value="Subdomain of clathrin and coatomer appendage domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0653">Protein transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Clathrin adaptor alpha/beta/gamma-adaptin appendage Ig-like subdomain" evidence="3">
        <location>
            <begin position="13"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="23187" checksum="9C5839438C47CE69" modified="2018-12-05" version="1" fragment="single">FVQPIGNIAERFQALCVKDSGVLYEDPYIQIGIKAEWRAHQGHLVLFLGNKNTAPLISVHAXXXXPIHLKMELSLVPDTIPPRAQVQCPLEITNLHPSRDVAVLDFSYKFGNDMVNVKLRLPAVLNKFLQPITISPEEFFPQWRSLPGPPLKLQEVVRGVRPLPLVEMANLFNSFHLIVCPGLDPNPNNLVASTTFYSESTRAMLCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD92</accession>
    <name>A0A392MD92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008512">
        <property type="protein sequence ID" value="MCH85436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10111" checksum="6E7AC743CEAC5869" modified="2018-12-05" version="1" fragment="single">MDGWVNVVHHVSLKSILAGWWIDVKEKGMRHMVLLPTVWCWSARNNVTYLNKIVVAAGFLGSIKTTSWGWLKMWHLDFIFKNGGKAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDN7</accession>
    <name>A0A392MDN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome P450 89A2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0006428</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008772">
        <property type="protein sequence ID" value="MCH85580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016709">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051103">
        <property type="entry name" value="Plant_metabolite_P450s"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24298:SF800">
        <property type="entry name" value="CYTOCHROME P450 89A2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24298">
        <property type="entry name" value="FLAVONOID 3'-MONOOXYGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13701" checksum="52D69D430767DFC5" modified="2018-12-05" version="1">MLFRKRWQELSQLRKFQNDLLVELIQSRKKVIENNNYDDDDDDDDDDDDDGCFVCYVDTLLNLHLPEEKRKLDEGELVALGLEFLTAGTDTTSTTIEWVMANLVKYKQTHATEASRGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME09</accession>
    <name>A0A392ME09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TPR repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006239</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008432">
        <property type="protein sequence ID" value="MCH85393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031491">
        <property type="term" value="F:nucleosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033053">
        <property type="entry name" value="Hir3/CABIN1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15502">
        <property type="entry name" value="CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15502:SF7">
        <property type="entry name" value="CALCINEURIN-BINDING PROTEIN CABIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="94"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="100"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="520"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="520" mass="58057" checksum="9CC1BD2B6A25BA04" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEJ0</accession>
    <name>A0A392MEJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006774</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009396">
        <property type="protein sequence ID" value="MCH85922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="22520" checksum="DCC4C620C0A7069F" modified="2018-12-05" version="1" fragment="single">STLQETNHLMQILKTYEAASGQEINMTKSERINSWRGRALSKAGKEVMIKWRIGNGSKIKVMSEPWLREKDGRWMQSPQPQGKGDEGIEQESWNYLWKIRAAPNAKRLLCINNYVWNGTKEPGQALGAKALFLWHEWRSVQSTTHRIMQSDLHQQQLQWQKSQIGWLKCKVDAGFHNDQTQQALGGVYVITRDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEV9</accession>
    <name>A0A392MEV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006427</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008771">
        <property type="protein sequence ID" value="MCH85579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF6">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="100"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="235" mass="27387" checksum="2860C8399C4BFA17" modified="2018-12-05" version="1">MGEVRATLLTLSQQMQQHQTVMQQQSTLLSELNRRLGTRPPPEVTQESETSNGVDRSQESRLSGKKVKLPAFEGDDPVAWITRAEIYFDVQKTPEDLRVKLARLSMEGATIHWFNLLMETEDELSWEKLKKALIARYGGRRLENPFEELSNLRQKGSIEEYVEAFELLSSQVGRLPEEQYLGYFMSGLKPQIRRRVRTLNPLSRMQMMRIAKDVEEELKEEDDDEXRRKTMMRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFI4</accession>
    <name>A0A392MFI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dentin sialophosphoprotein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006915</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009662">
        <property type="protein sequence ID" value="MCH86061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31008">
        <property type="entry name" value="COP1-INTERACTING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31008:SF15">
        <property type="entry name" value="GPI-ANCHORED ADHESIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14157" checksum="31DCD6CC757662C4" modified="2018-12-05" version="1" fragment="single">MRSDTLLDYAVLQLSPKRSRCELLVSSDGITEKLASGLVKPYLDHLKAAEEQAALSVQSIRLEIDRHRNAERWFTKGTFERFVQYVGMPEILEMVNTFDAEMSQLEAARKIYSQGTGDQRMDSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG26</accession>
    <name>A0A392MG26_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">phosphoenolpyruvate carboxykinase (ATP)</fullName>
            <ecNumber evidence="3">4.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0006842</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>oxaloacetate + ATP = phosphoenolpyruvate + ADP + CO2</text>
            <dbReference type="Rhea" id="RHEA:18617"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.49" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010009528">
        <property type="protein sequence ID" value="MCH85989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG26"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004612">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.449.10:FF:000009">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.449.10">
        <property type="entry name" value="Phosphoenolpyruvate Carboxykinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001272">
        <property type="entry name" value="PEP_carboxykinase_ATP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008210">
        <property type="entry name" value="PEP_carboxykinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30031:SF0">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30031">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01293">
        <property type="entry name" value="PEPCK_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68923">
        <property type="entry name" value="PEP carboxykinase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH85989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="181" mass="20630" checksum="D21BBE930841676A" modified="2018-12-05" version="1" fragment="single">MDEHSFMVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTPKELENFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDLNLARKEMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSDNTLKELSVSVTVKVMKVLADSVSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH34</accession>
    <name>A0A392MH34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010420">
        <property type="protein sequence ID" value="MCH86503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="296"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="387" mass="44439" checksum="ECA6D28C75C17F84" modified="2018-12-05" version="1" fragment="single">LFNCSIEENIAYGFDGKINDADIENAVKMANAHEFISNFPEKYKTFVGERGIRLSGEQKQRMALLPLQVVSLARGSGTQPGSLNHFLKPAIPKFEGFYDHWAMLXENLLRSKEYWSLIEVGVTVAPPNATAEQIRVAHASKITDMKVKNYLFQSIDRSILETILSKETSKEIWDSMRLKYQGSTKVKRAQLQALRREFEILEMGDNETVDEYFARTMAIANKMTAHGERMQPVTIVEKILRSMPEKYNYVVCSIEESNDVTTLSIDELQSSLIGTRKKFIKGSGRGRVNKEIVEYCYKCHKLGHYKHECPTWEENTKYAEFDCEEEMLLMVKTDCDELENERWFLDSGCSNHMVGNKNWLYEFDESYRDSVKLGDDSKMSVMGKGNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHF9</accession>
    <name>A0A392MHF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellulose synthase A catalytic subunit 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007803</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011229">
        <property type="protein sequence ID" value="MCH86940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16617">
        <property type="entry name" value="mRING-HC-C4C4_CesA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000031">
        <property type="entry name" value="Cellulose synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027934">
        <property type="entry name" value="CES_Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14569">
        <property type="entry name" value="zf-UDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RING-type" evidence="3">
        <location>
            <begin position="37"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="118"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="149"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20346" checksum="976987A5572894D2" modified="2018-12-05" version="1" fragment="single">MDAKSGLFAGSLNSNELVVIQGHNEPKTVKNLDGQVCEICGDSVGRTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEEDIDDIEYEFKMEEERYKLKHEESMRSRDDDENTKYGEQPLSSSHSGAKLDNKEKTDDWKLQQGNLLIETDAVDPEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHG8</accession>
    <name>A0A392MHG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Oligopeptidase A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0007805</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011233">
        <property type="protein sequence ID" value="MCH86942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006518">
        <property type="term" value="P:peptide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804:SF83">
        <property type="entry name" value="LD37516P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase M3A/M3B catalytic" evidence="7">
        <location>
            <begin position="1"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH86942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17957" checksum="FCC78DF28890EB67" modified="2018-12-05" version="1" fragment="single">MEDLKKFSKDQGALEADDLTHWDVSFWSERLRESKYDINEEELRPFFSLPNVMDGLFDLAKTLFGIEIEPADGLAPVWNKDVKFFRVKDSSGSPVAYFYFDPYSRPSEKRQGAWMDEVVARSRVLSPDGNSSRLPVAHMVCNQTPPVGSKPSLMTFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHR9</accession>
    <name>A0A392MHR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011430">
        <property type="protein sequence ID" value="MCH87056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="16114" checksum="4C3BCB991C6D9ABD" modified="2018-12-05" version="1">MKRNAKFGKPIPKIPVRRNRQGLAWMNHHVDTTGRWLPVPKDKQDEFLAELRAAGKDRREGKPIDSSRFDKYFPGANSLAKGRKKLYKPRGRANWNVLFRKYKEDMAAPTKAASLKRGSRKSLRLINKRKKEQLLNKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIJ9</accession>
    <name>A0A392MIJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Auxilin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007749</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011136">
        <property type="protein sequence ID" value="MCH86889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28305" checksum="4E19337B72DF96EE" modified="2018-12-05" version="1">MGFVLFVARRAGISVKKEVPMNFLIDPQEGSSTLRSADVLVFGWVPPHDFPILLEDEVCPVCRKVCLDNFGEHATYCRELPDFEYRHDLIRDVFFYIFRRAGISVKKEAPMNFLIDPQEGSSTLRSADVLVFGWVGGKHAFVDSTGVFPLCGTRVGDFTVERAALKAASSKMTKREKACSDNQHVFIPFTFDTFDFLAPDVVDLLKRVQRVMHNKVVLPRSMDVVFQRLSFVIDKGLTAQLVVRLVFIHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ81</accession>
    <name>A0A392MJ81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012440">
        <property type="protein sequence ID" value="MCH87556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010073">
        <property type="term" value="P:meristem maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044824">
        <property type="entry name" value="MAIN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033:SF8">
        <property type="entry name" value="PROTEIN MAINTENANCE OF MERISTEMS-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="1">
        <location>
            <begin position="53"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30742" checksum="51F3DC67DE9CCA22" modified="2018-12-05" version="1" fragment="single">ERVYAPNGRFDFRISSQGKKLAERIPEDAHPDVIQAWLDNSELRWLERTSLKMVDPQLLCAFTERWHPETSSFHMSFGEMTITLDDVACLLHLPVRGDFFTPVSYTMEQAAALAVELFGVDYYAALAETQHQRGGYFSQQWIYDCYRGCLASGRYAEAARAYMYLIVGCTIFADKSYTRIDAKWLPIFRHLDQLHRFSWASAALVCLYDNLNDASKFETKSLAEYATLLQVNKRRHQRRIYALRMAMEFDMGEGSAVNVLLLSWIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJQ9</accession>
    <name>A0A392MJQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH dehydrogenase C1 chloroplastic/mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008595</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012779">
        <property type="protein sequence ID" value="MCH87717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003955">
        <property type="term" value="F:NAD(P)H dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042372">
        <property type="term" value="P:phylloquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051169">
        <property type="entry name" value="NADH-Q_oxidoreductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42913:SF4">
        <property type="entry name" value="ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE C1, CHLOROPLASTIC_MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42913">
        <property type="entry name" value="APOPTOSIS-INDUCING FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="5">
        <location>
            <begin position="8"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="219" mass="24102" checksum="213668B9DEB6C05C" modified="2018-12-05" version="1" fragment="single">SSLFYMEQIALVDQSERFVFKPMLYELLSGEVDEWEIAPYFSDLLANTGVRFLKDRVKVLHPSDHAGVNGPNASTRGGTVHLESGLHIEYDWLVLALGAEAKLDVVPGAVEFAIPFSTLEDARKVNNRLKILERKTFGKDRQISVAIVGCGYSGVELAATVAERLQNRGVVRAINVETTICPTAPPGNREAALXXXXXXXXXXXXXXLNIYFVQPWATG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJV0</accession>
    <name>A0A392MJV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">3-dehydroquinate synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007862</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011331">
        <property type="protein sequence ID" value="MCH86998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002812">
        <property type="entry name" value="DHQS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056179">
        <property type="entry name" value="DHQS_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33563">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33563:SF1">
        <property type="entry name" value="3-DEHYDROQUINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01959">
        <property type="entry name" value="DHQS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26558">
        <property type="entry name" value="DHQS_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-dehydroquinate synthase N-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="3-dehydroquinate synthase C-terminal" evidence="4">
        <location>
            <begin position="74"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF26558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21497" checksum="3A7FF8E54F3D46F5" modified="2018-12-05" version="1" fragment="single">VIPAENIIAAFQNSQKTVLAISGNTSEAQIFLEALEHGLDGIVLKVEDIEPILELKEYFDRRTEESNVLNLTKATVTNIQVAGMGDRVCVDLCSLMRPGEGLLIGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYIAVPGGRTCYLSELKSGKEVIVVDQQGRQRIAIVGRVKIESRPLILVEAKVCVLKFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJV4</accession>
    <name>A0A392MJV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Auxilin-related protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012930">
        <property type="protein sequence ID" value="MCH87796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031982">
        <property type="term" value="C:vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072318">
        <property type="term" value="P:clathrin coat disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072583">
        <property type="term" value="P:clathrin-dependent endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172">
        <property type="entry name" value="AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172:SF19">
        <property type="entry name" value="J DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="183"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="192"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="218"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="245"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="381" mass="42033" checksum="C2D701B81AD25063" modified="2018-12-05" version="1" fragment="single">PTPDIGSLSGSTFNASKTTSNATEDPFKIFESTSAPSGSPSGHFTDPLEEISKFTSSRSTKNDSSSNSNGVYDDTDPFDGLGNSSDSNKPVVGPRPTSPSHVNDGFGHVNSQADMSPKYEEKLVSDDDIWLTVSEIPLFTQPTAAPPPSRPPPPRPVHIPKSGTGSPVFANVRKNDHEFFSFPSSTRFSQGPKSAPAAAKLSSASEFDELEDFAMGRSHGDGDERENGVPNEELGMNSAAAAMKEAMERAEAKFRHAKEVRGREDTKPSRSKEPVHLEKDGRAVPEERGRLNHEQQQKEMEEMEKRRIEREREEKEREQQRLEREREKARQAVERATREARERAAAVARQRAEKAAVEKANAEARVRAERAAVQRAQAEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK45</accession>
    <name>A0A392MK45_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating)</fullName>
            <ecNumber evidence="5">1.2.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0008289</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>D-glyceraldehyde 3-phosphate + phosphate + NADP(+) = (2R)-3-phospho-glyceroyl phosphate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10296"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="1.2.1.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate biosynthesis; Calvin cycle.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Tetramer of either four A chains (GAPDH 2) or two A and two B chains (GAPDH 1).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.13" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010012163">
        <property type="protein sequence ID" value="MCH87419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047100">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019253">
        <property type="term" value="P:reductive pentose-phosphate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18126">
        <property type="entry name" value="GAPDH_I_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.360.10:FF:000002">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0113">Calvin cycle</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyceraldehyde 3-phosphate dehydrogenase NAD(P) binding" evidence="8">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00039137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00052787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00063826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH87419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="26563" checksum="33B6C2B16E245759" modified="2018-12-05" version="1" fragment="single">ELGIDLVIEGTGXFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADGYTHDDDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNEAFRDSAAKELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML60</accession>
    <name>A0A392ML60_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
            <ecNumber evidence="3">2.5.1.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0009146</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Is involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>RX + glutathione = an S-substituted glutathione + a halide anion + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16042"/>
            <dbReference type="ChEBI" id="CHEBI:17792"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:90779"/>
            <dbReference type="EC" id="2.5.1.18"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
            <location evidence="3">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GST superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.18" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010013827">
        <property type="protein sequence ID" value="MCH88262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03058">
        <property type="entry name" value="GST_N_Tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000014">
        <property type="entry name" value="Tau class glutathione S-transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045073">
        <property type="entry name" value="Omega/Tau-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11260:SF781">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE U19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11260">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG00358">
        <property type="entry name" value="Main_(cytGST)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="4">
        <location>
            <begin position="3"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00047960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU369102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH88262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13462" checksum="FB460EC5C1D55C1C" modified="2018-12-05" version="1">MAHEVILLDFWPSPFGIRVRIALAEKGIKYEYIEEDLMSMKKSPLLLEMNPVHKKSPVLIHNGKPICESLIAVQYIDEVWNDKSPLLPSDPYQRSQARFWAAYVDNKNIGSLVKLHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML70</accession>
    <name>A0A392ML70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">U2 snRNP-associated SURP motif-containing protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012801">
        <property type="protein sequence ID" value="MCH87729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051485">
        <property type="entry name" value="SR-CTD_assoc_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140">
        <property type="entry name" value="RNA PROCESSING PROTEIN LD23810P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140:SF0">
        <property type="entry name" value="U2 SNRNP-ASSOCIATED SURP MOTIF-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9651" checksum="A3BC50E9CB310F6B" modified="2018-12-05" version="1" fragment="single">MSSFSITRKKTPFQKHREEEEAKKKAGLIAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLB2</accession>
    <name>A0A392MLB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclic nucleotide-gated ion channel 18-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009164</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013855">
        <property type="protein sequence ID" value="MCH88280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651:SF39">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81324">
        <property type="entry name" value="Voltage-gated potassium channels"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="19279" checksum="702E605C2D9FF080" modified="2018-12-05" version="1">MYRLISTPASTFRQFRRLRSRPKITAASVEEKHASRILLWRYQILDPDSEFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKISILLTVLRSFADLFYLLHMVMKFRTAFVAPNSRIVGRGELVMDSWEIALRYLKSDFVIDLSATIPLPQACSLAPLFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLL1</accession>
    <name>A0A392MLL1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Cell wall hydroxyproline-rich glycoprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0008441</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012464">
        <property type="protein sequence ID" value="MCH87568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051582">
        <property type="entry name" value="LRR_extensin-like_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32093">
        <property type="entry name" value="LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32093:SF131">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING N-TERMINAL PLANT-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0134">Cell wall</keyword>
    <keyword evidence="8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0379">Hydroxylation</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="5 11" id="KW-0732">Signal</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017313315" description="Cell wall hydroxyproline-rich glycoprotein" evidence="11">
        <location>
            <begin position="25"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="12">
        <location>
            <begin position="100"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="50"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="10">
        <location>
            <begin position="60"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00041871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH87568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="470" mass="52172" checksum="804FBCC46B89C6FD" modified="2018-12-05" version="1" fragment="single">KSLSFQFLAITCVFLLHFQSIIHAQDHIATSEYEALGLTTEPKRETLEIIIGGGGGYSPAPSPEPNCPPPQPPPSPPPSPKPRPPAPRPRPLTFRLDRARRVLIQFATTVKPNSITTNWINSTKDTCNFNGILCGYYPTDGQRAVAGLDLNQGRLSGKTCDNIPLTGLLDKLQELTFFHVNSNSFSDKIPTQILNFPYFYELDLSNNKFVGEFPEVVIKATNLVFLDLRFNNLEGPVPSDLFKKDLDVIFINNNKFTGSLPANFGSTPARYLTFARNQLTGEIPRSIGDASKTLTEVLFLGNKFEGCLPFEIGYLKKATVFDVSLNSLTGPIPASFGCLEKIQFLNLAHNKFYGTVPESVCVLPGIKNNGNLSLSDNYFTAIDPACWYLLKSKILDVSNNCIPGLPNQRSKKDCYDFQCKVKPCSNHQSLSYVPCKTRWGAKQDTAPVSQEMATEPVTYKSLKPHHRLRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLN6</accession>
    <name>A0A392MLN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Neurobeachin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013336">
        <property type="protein sequence ID" value="MCH88015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1540.10">
        <property type="entry name" value="BEACH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000409">
        <property type="entry name" value="BEACH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036372">
        <property type="entry name" value="BEACH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050865">
        <property type="entry name" value="BEACH_Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13743:SF157">
        <property type="entry name" value="BEACH DOMAIN-CONTAINING PROTEIN C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13743">
        <property type="entry name" value="BEIGE/BEACH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02138">
        <property type="entry name" value="Beach"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01026">
        <property type="entry name" value="Beach"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81837">
        <property type="entry name" value="BEACH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50197">
        <property type="entry name" value="BEACH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BEACH" evidence="1">
        <location>
            <begin position="28"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="16105" checksum="B9730F88AE6FEDFD" modified="2018-12-05" version="1" fragment="single">SSEGRRNAYRAIVQARPPHLNNIYLATQRPDQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSESLDISNPSSFRDLSKPVGALNPDRLKRFQERYASFDDPVIPKFHYGSHYSSAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLT5</accession>
    <name>A0A392MLT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartic proteinase-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014241">
        <property type="protein sequence ID" value="MCH88476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017343644" evidence="1">
        <location>
            <begin position="28"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14853" checksum="64D8B0A2C432B6BE" modified="2018-12-05" version="1" fragment="single">MAVAPTQFISIIFFLFLILHLTNFALSINPNNLLLFPKTHRNASRDSRPAMILPLHLSPPVSSISSFNPRRQLQRSESQHHPNARMRLYDDLLINGYYTTRLWXXXXXXREVLLRMFLVLLVNTVVDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ36</accession>
    <name>A0A392MQ36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">60S ribosomal protein L26-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0010546</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016587">
        <property type="protein sequence ID" value="MCH89646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005756">
        <property type="entry name" value="Ribosomal_uL24_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01080">
        <property type="entry name" value="rplX_A_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11143">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16906">
        <property type="entry name" value="Ribosomal_L26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="9"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH89646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6478" checksum="97C651FFE1700DFD" modified="2018-12-05" version="1" fragment="single">MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRSKYNVRSMPVRKDDEVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ79</accession>
    <name>A0A392MQ79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016682">
        <property type="protein sequence ID" value="MCH89696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="6952" checksum="7E94F35D06EA856A" modified="2018-12-05" version="1" fragment="single">FTKTQIKVVVHDGGGSGRTVRFACQDGGKGKGVWRSGYRRLTGGAEARTVAPAVTMRERERSSGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQR7</accession>
    <name>A0A392MQR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0010234</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015945">
        <property type="protein sequence ID" value="MCH89339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050667">
        <property type="entry name" value="PPR-containing_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47939">
        <property type="entry name" value="MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47939:SF13">
        <property type="entry name" value="OS03G0201400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="18"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="53"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="137"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="144"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="156"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH89339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="25998" checksum="6D9F46D86A9BF64E" modified="2018-12-05" version="1" fragment="single">EKAFELLYDMEKKYVKFDNMTVSAVINCYCQKGDMEGALEFYYKFKGKDILPDFLGFLYLIRGLCTKGRMEESRSVLREMLQSKNVAEMINIVNSEVDTESICDFLATLCEQGSIQEAVTVLNEIARMFFPVQRLSTSNQGSDKSQKIYESKDFGSKSSTTLPSSCGSDLDFESCDTRDVRNHMTKRSRLRGFDFYYSRIAALCSKGEVQEANQLAKEMLSDLTEPMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR57</accession>
    <name>A0A392MR57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009657</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014802">
        <property type="protein sequence ID" value="MCH88764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7367" checksum="76442E0FB85ECB62" modified="2018-12-05" version="1">MDENVARMKIVMRILMSPHNECKELIMKAANECWLQVHINRDKAMNLKRQRTQGPENEVQMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSI0</accession>
    <name>A0A392MSI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">U-box domain-containing protein 34-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0010885</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017339">
        <property type="protein sequence ID" value="MCH89979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001023">
        <property type="entry name" value="Os07g0541700 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051348">
        <property type="entry name" value="U-box_ubiquitin_ligases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647">
        <property type="entry name" value="OS02G0152300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647:SF51">
        <property type="entry name" value="PROTEIN KINASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH89979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="260" mass="29064" checksum="C5211510FD0A70C2" modified="2018-12-05" version="1" fragment="single">GYGPVFKGVLDNHVVAVKALRPDITQGEKQFHQEVLVLGSIRHPNIVVLLGACPEYGCLVYEYLENGSLEDRLFCKDNTPPIPWKTRFKIASEIATGLLFLHQTKPEPVVHRDLKPANILLDRNKVSKITDYGLARLVPPSIANKTXXXXXXXXXXXXXYIDPEYQQTGLLGVKSDIYSLGVMLLQIITGKPPIGVAHLVEEAIQNNTFAEVLDPNVTDWPVEEALSYAKMALKCCEMRKKDRPNLATVILPELIRLRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSV8</accession>
    <name>A0A392MSV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">WEB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011514</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WEB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018661">
        <property type="protein sequence ID" value="MCH90597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009904">
        <property type="term" value="P:chloroplast accumulation movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009903">
        <property type="term" value="P:chloroplast avoidance movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008545">
        <property type="entry name" value="Web"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32054">
        <property type="entry name" value="HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32054:SF4">
        <property type="entry name" value="OS07G0677900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05701">
        <property type="entry name" value="WEMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="364"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="128"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="294"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="372"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="386" mass="44149" checksum="DABC0023451F3E3E" modified="2018-12-05" version="1" fragment="single">HHGEELDREKLEEQARVLEKELMLKERETLDVLKELEKTKRLVEDLKSKLQKEESEANLHLGMNVCDQRSIVDENEVKELKQSSPSEFLQPMTECKECSMPSHVSSPNLILMELKQAKLNLTKTTHDIADVRATVESLNNKLENERISLEKTRERLTQNCSKVSSLEDELNQTRLRLQVVKVAASXXXXXXXXXXXRLNSETEHFRKMRESAKSEVLKTMSEIELTKAMIRTAEIRFFAATKMKEASRAAEAATLARINALSNHDGSPGECTQKCEEITLSFEEYTTLIRKAXEAQEQSKNRVAEAMLEVDEANSSQMDILKRVEEAAEEVKTRKKALEEALQRVEDADRGKLEVEEALRKWRSDGHKRRSLTNSCMKFKNSGPSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT74</accession>
    <name>A0A392MT74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent helicase BRM-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011678</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018986">
        <property type="protein sequence ID" value="MCH90756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.920.10:FF:000038">
        <property type="entry name" value="Brahma1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.920.10">
        <property type="entry name" value="Bromodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001487">
        <property type="entry name" value="Bromodomain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036427">
        <property type="entry name" value="Bromodomain-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00439">
        <property type="entry name" value="Bromodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00297">
        <property type="entry name" value="BROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47370">
        <property type="entry name" value="Bromodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0103">Bromodomain</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bromo" evidence="3">
        <location>
            <begin position="114"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="92"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="27324" checksum="DBD3FAEC45246DCF" modified="2018-12-05" version="1" fragment="single">MERPEDKSGREMASLQRGESSLLPRNKYPLQTRMDPESKPFGDSSSSKHDTNESILKNKRKLPSRKVANASKLHVPPKFSRLNYTSAPSEDNGEHSRESWKGKPNNLCGSSAHGTKMTEIIKRGCKNVISKLQRRIDKEGQQIVPLLSDLWKRIENSGFAGGTGNNLLDLRKIDQRIDRLDYSGVMELVFDVQFMLKNAMHFYGYSYEVRSEARKVHDLFFDILKIAFSDIDFGEARSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU59</accession>
    <name>A0A392MU59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Zinc finger BED domain-containing protein RICESLEEPER</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0011129</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017844">
        <property type="protein sequence ID" value="MCH90218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003656">
        <property type="entry name" value="Znf_BED"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052035">
        <property type="entry name" value="ZnF_BED_domain_contain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46481:SF11">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02892">
        <property type="entry name" value="zf-BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00614">
        <property type="entry name" value="ZnF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50808">
        <property type="entry name" value="ZF_BED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="BED-type" evidence="7">
        <location>
            <begin position="21"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="335" mass="38139" checksum="714FD64D43BA7492" modified="2018-12-05" version="1">MLLLQVHAMDMSDAVIVKSSRLKSVVWNDFDRIKKGDTCVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGLAQYITAREKRKEGTLAIANFSLDQDTTKDDTLSLVNIKFEQAQLKDESVNTGSGNFDQRRSRFDLARMIILHGYPLAMVEHVGFRAFVKNLQPLFELVTLNRVEADCIEIYEKERKKMNEMLDKLPGKISLSADVWTATGDAEYLCLTSNYIDESWELRRRILNFIRIDPSHTEDMLSEAVMSCLMDWDIDRKLFSMILDSCSTCDNIAIRIGDRLMQNRFLYCNGQLFDIRCVANVLNVMSQLALGASGRDSPQLPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVP6</accession>
    <name>A0A392MVP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Auxin response factor 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0012533</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ARF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020781">
        <property type="protein sequence ID" value="MCH91606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009734">
        <property type="term" value="P:auxin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10017">
        <property type="entry name" value="B3_DNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.330.10:FF:000001">
        <property type="entry name" value="Auxin response factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044835">
        <property type="entry name" value="ARF_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384">
        <property type="entry name" value="AUXIN RESPONSE FACTOR 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384:SF1">
        <property type="entry name" value="AUXIN RESPONSE FACTOR 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02362">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01019">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0927">Auxin signaling pathway</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="9">
        <location>
            <begin position="23"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="21"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH91606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17620" checksum="B472D379FF5BE05E" modified="2018-12-05" version="1" fragment="single">MQTEPTSLDPCPAEPPRPKTHSFSKVLTNSDTSTHGGFSIHKKPATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGHPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAVATQTLFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW41</accession>
    <name>A0A392MW41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019337">
        <property type="protein sequence ID" value="MCH90918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4949" checksum="D3A8017EFD4ED8B2" modified="2018-12-05" version="1">MPRPDNVQKGLASGYAVLVVVSFVAIRSSMVIFAILAFVVLKKITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWK0</accession>
    <name>A0A392MWK0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Piezo-type mechanosensitive ion channel homolog domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020288">
        <property type="protein sequence ID" value="MCH91375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071260">
        <property type="term" value="P:cellular response to mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042391">
        <property type="term" value="P:regulation of membrane potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027272">
        <property type="entry name" value="Piezo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057611">
        <property type="entry name" value="PIEZO_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167:SF25">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25288">
        <property type="entry name" value="PIEZO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Piezo-type mechanosensitive ion channel homolog" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7641" checksum="B7B718C745B4B280" modified="2018-12-05" version="1" fragment="single">MEILMQLGFLEEDSAWDFLEVALLACFCTIHNHGFEMLFSFSAIIQHAPSPPIGFSILKAGLNKSVLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWN7</accession>
    <name>A0A392MWN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012033</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019706">
        <property type="protein sequence ID" value="MCH91108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4618" checksum="CFF183D18DC541B7" modified="2018-12-05" version="1" fragment="single">MWEGLNCSIDGNNISRITSLDLSSSGLIGQIASSISKLTMLQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWW4</accession>
    <name>A0A392MWW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012923</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021617">
        <property type="protein sequence ID" value="MCH91991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019141">
        <property type="entry name" value="DUF2045"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21477:SF13">
        <property type="entry name" value="KIAA0930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21477">
        <property type="entry name" value="ZGC:172139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09741">
        <property type="entry name" value="DUF2045"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="14168" checksum="63DA9A98530523EB" modified="2018-12-05" version="1" fragment="single">MVATNHSLATYAFPVCCTTAGKSRFGSLLSGGHYSGKTDRIYMKGPGGRGEVEVAVSGVADQSQQDSGPHSPVISKKGFGLGVIVRRAASVASVAAKHAYAAASSPNLDEMIPLKCSLMSISLPWEYIAYDLLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXL9</accession>
    <name>A0A392MXL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromodomain-helicase-DNA-binding protein 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021774">
        <property type="protein sequence ID" value="MCH92053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="373"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="399" mass="42375" checksum="5318F06C71CCE441" modified="2018-12-05" version="1" fragment="single">SKCQLISPNDISTNGLPSDHSDCHEIPASSQATACSDLGTVKNLVEPVSDVKPHAFTDMNCDSPELDRNPVSDSRVADNALSFKELDMNDSHVEVLEAGPLVNSSQANNTKENNEREDVSGSVLNHAITDMNCDPPGLDQNPVLDSQAVDNASSLKEFDMNDAHVEVLEAGPLVNSSQANNTKENNENEDVSGSVLNLAITDTNSDSPGLDQNPVLDSRVVDNASSLKDLDMNDVHVEVLEAGPLVNSSQGNNTKENNENVDVSGSVLNHAFTDMNSKSPGLDQNSVLDSQVVDNALSLKVNDMNGAHVEVLEAGPLVNSSQWNXXXXXXXXXXVSGSVLNHAGESSLQVKSDLNGEIAYEGEKNSHLDTEVASNEMHLDETGLNASSDTTETDPALNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXS3</accession>
    <name>A0A392MXS3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">ADP,ATP carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0013248</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Plastid</location>
            <location evidence="8">Chloroplast membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ADP/ATP translocase tlc family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022415">
        <property type="protein sequence ID" value="MCH92311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005471">
        <property type="term" value="F:ATP:ADP antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004667">
        <property type="entry name" value="ADP_ATP_car_bac_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31187">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31187:SF13">
        <property type="entry name" value="ADP,ATP CARRIER PROTEIN 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03219">
        <property type="entry name" value="TLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0934">Plastid</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="82"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="87"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH92311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="11768" checksum="0E7A446F9A08B025" modified="2018-12-05" version="1" fragment="single">VKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGVLLVIVLAWLGAAKSLDTQFTALRKEEELEKEMERAAAVKIPVVSENDGGNGSFSSDSSISPSEASSPRNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYI4</accession>
    <name>A0A392MYI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023018">
        <property type="protein sequence ID" value="MCH92597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="42"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17929" checksum="432B5B68D05E042D" modified="2018-12-05" version="1" fragment="single">MKVEELQCSLEAYEQRVNERSKGRGMDHALQAQTFKKYRGKKGKGKNKYKDRGKTSNQALITGVLYVPNMQSNLLSMDQLVENGFTMDLGNNQMKVYNAENKLILSVPLSQSRTFQVQFTASASHCLARKAIHDATWLWHLSYGHLNFKSLTNLKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ35</accession>
    <name>A0A392MZ35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ultraviolet-B receptor UVR8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013161</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022181">
        <property type="protein sequence ID" value="MCH92225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="entry name" value="Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051210">
        <property type="entry name" value="Ub_ligase/GEF_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870:SF408">
        <property type="entry name" value="OS09G0560450 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22870">
        <property type="entry name" value="REGULATOR OF CHROMOSOME CONDENSATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00415">
        <property type="entry name" value="RCC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13540">
        <property type="entry name" value="RCC1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="55"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="repeat" description="RCC1" evidence="2">
        <location>
            <begin position="99"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="20921" checksum="D9062A4BF055EAFE" modified="2018-12-05" version="1" fragment="single">ANEFGQLGDGTEVRRKHPKKVKQLESEFVKSVACGAHCSACIAEPRENDGTVSTGRLWVWGQNQGSNLPRLFWGAFEPNTIIKQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTCEGLQGARIISSYAKFLDEAPELVKITSVSCGEYHTTAISDKGEVESHVKRHNSMEMLHLLCKFLFPCPLAWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N016</accession>
    <name>A0A392N016_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022394">
        <property type="protein sequence ID" value="MCH92298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N016"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040229">
        <property type="entry name" value="At3g27390-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31133">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31133:SF11">
        <property type="entry name" value="STEROID NUCLEAR RECEPTOR, LIGAND-BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="16938" checksum="6202F43D909E1339" modified="2018-12-05" version="1">MLYLPGAFLAAVIGMLVDVPVISFIAVCKGPYMLFKGWHRLFHDLVGREGPFLETICVPFAGLAILLWPLAVAGAVLASILASYFLGAYAGVVAYQRRVAEQQGAAAGVTDMLLIKGTAEVEGGHSSISQHTKVLSNISHGEPWRITVVNFLTTAIANL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0N4</accession>
    <name>A0A392N0N4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021777">
        <property type="protein sequence ID" value="MCH92054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0N4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4178" checksum="B2061FAE5B418ABE" modified="2018-12-05" version="1" fragment="single">MLPQQEFESCWQFPPLMQEMLVGRLQHRSGEMDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1I2</accession>
    <name>A0A392N1I2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">carotenoid 9,10-dioxygenase</fullName>
            <ecNumber evidence="6">1.14.99.n4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0014533</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>all-trans-zeaxanthin + 2 O2 = 4,9-dimethyldodeca-2,4,6,8,10-pentaenedial + 2 (3R)-hydroxy-beta-ionone</text>
            <dbReference type="Rhea" id="RHEA:26393"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:27547"/>
            <dbReference type="ChEBI" id="CHEBI:53171"/>
            <dbReference type="ChEBI" id="CHEBI:53173"/>
            <dbReference type="EC" id="1.14.99.n4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="8">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the carotenoid oxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.99.n4" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010025284">
        <property type="protein sequence ID" value="MCH93581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010436">
        <property type="term" value="F:carotenoid dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016121">
        <property type="term" value="P:carotene catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004294">
        <property type="entry name" value="Carotenoid_Oase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10543">
        <property type="entry name" value="BETA-CAROTENE DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10543:SF89">
        <property type="entry name" value="CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03055">
        <property type="entry name" value="RPE65"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00039084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR604294-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH93581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="15051" checksum="1A10F12B1D70D210" modified="2018-12-05" version="1" fragment="single">EMVKNQKLIFSFDSTKKARFGVLPRYAKDDKLIRWFELPNCFIFHNANAWEEEDEVVLITCRLKNPDLDMISENIKDKLENFSNELYEMRFNIKTGKASQKKLSAFSVDFPRVNECYTGRXXXXYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3D1</accession>
    <name>A0A392N3D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cellulose synthase A catalytic subunit 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0015048</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026478">
        <property type="protein sequence ID" value="MCH94093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016760">
        <property type="term" value="F:cellulose synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030244">
        <property type="term" value="P:cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005150">
        <property type="entry name" value="Cellulose_synth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13301">
        <property type="entry name" value="X-BOX TRANSCRIPTION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03552">
        <property type="entry name" value="Cellulose_synt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH94093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="254" mass="28741" checksum="5798A483CD76F303" modified="2018-12-05" version="1" fragment="single">MICYLFYIYFLQINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENGEDESIIEATDEDKQLLQSDMNTENKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYEVGMSYGSIAADTLTSLKMHTRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFKEGRLKVLQRIAYINSTVYPFSALPLTIYCIIPAICLLTDKFITPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3U8</accession>
    <name>A0A392N3U8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Equilibrative nucleotide transporter 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0015277</name>
        <name evidence="11" type="ORF">A2U01_0015956</name>
    </gene>
    <organism evidence="10 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">10/8</strain>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC29A/ENT transporter (TC 2.A.57) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027038">
        <property type="protein sequence ID" value="MCH94319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010027445">
        <property type="protein sequence ID" value="MCH94490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010028650">
        <property type="protein sequence ID" value="MCH94984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3U8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005337">
        <property type="term" value="F:nucleoside transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002259">
        <property type="entry name" value="Eqnu_transpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOSIDE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332:SF77">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01733">
        <property type="entry name" value="Nucleoside_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5036073522" evidence="8">
        <location>
            <begin position="17"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH94319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH94490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH94984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22544" checksum="846FFA14E13547B8" modified="2018-12-05" version="1">MVAIAFLLCCIVFSNLQHKLPVMQQYQQSLLQDHTLCSKTKFCAVARKIKGPAFGIFIIYIVTLSIFPGFIAEDLQSEVLKDWYPIILITVYNLADLMGKSLTAFYVPQCIKRAICAATARLLFYPLFIVCLHGPNWLKTEVPMIVLTFLLGFTNGYLTSVLMILAPKSVPYSESELSAIVMTAFLGFGLVGGSVLGWFWIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N437</accession>
    <name>A0A392N437_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">A2U01_0015530</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="17">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010027616">
        <property type="protein sequence ID" value="MCH94567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N437"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000357">
        <property type="entry name" value="serine/threonine-protein kinase-like protein CCR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46146">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46146:SF14">
        <property type="entry name" value="SERINE_THREONINE-KINASE CCR4-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 16 17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 21" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 16 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 17" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="27"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="20">
        <location>
            <begin position="126"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="66"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="18">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="18">
        <location>
            <begin position="72"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="21">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH94567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="359" mass="39573" checksum="C0394B09B47A605D" modified="2018-12-05" version="1" fragment="single">MQPPSVQPPPPPPPVSPSRSKTLTRGLLIFAIVGSVGGFIGICSIIYCLWTGVCFGKKKVHNSVQPTVTRGSSSGSNTSSSSIKSVIMRQGSRIMRRQRSGPSSTKHQERAEEFSLSELIAATNHFSLQNKIGAGSFGIVYRGKLFDGREVAIKRSETGLKVKKFQEKESAFESELAFLSRLHHKHLVRLVGYCEDKDERLLVYEYMKNGSLHSHLHDKNNVEKSSSLLNSWNMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDATWTARVSDFGLSLMSPESDINYKPTKTAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFRNDEDGGNPSSLVDFAVPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5R4</accession>
    <name>A0A392N5R4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016054</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028916">
        <property type="protein sequence ID" value="MCH95081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5R4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2552" checksum="13C79F1A1720CC1B" modified="2018-12-05" version="1">MSSIDAAIDKRILESRLAGRMAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7S2</accession>
    <name>A0A392N7S2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">S-adenosyl-L-methionine-dependent methyltransferases superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016204</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029265">
        <property type="protein sequence ID" value="MCH95229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7S2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43036:SF2">
        <property type="entry name" value="OS04G0481300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43036">
        <property type="entry name" value="OSJNBB0011N17.9 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13195" checksum="A54F72EADA41BA34" modified="2018-12-05" version="1" fragment="single">SVQYLQQPEKVFAEVFRLLKPGGVFIVSFSNRMFYEKAISAWREGTAYSRVQLVVQYFQSVEGFTEAEVVRKLPGTNNDDKSPLVWIMKLFGLFSGSDPFYAVIAYRNFKPIHGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9D0</accession>
    <name>A0A392N9D0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Auxin transport protein BIG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017246</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031929">
        <property type="protein sequence ID" value="MCH96262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009926">
        <property type="term" value="P:auxin polar transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045189">
        <property type="entry name" value="UBR4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056530">
        <property type="entry name" value="UBR4-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24079">
        <property type="entry name" value="UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="E3 ubiquitin-protein ligase UBR4-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="295"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="342"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="351" mass="38789" checksum="1C620EC9791B55AA" modified="2018-12-05" version="1" fragment="single">MAKPSFTFDNMENDEDMKKGLAAIESESENAHRRYQQLLGFKKPLLKIVSSIGDSEIDSQHKDSVQQMMVSLPGPSCKINRKIALLGVLYGEKCKAAFDSVTKSVQTLQGLRKVLMNYLHQKNSDNSVSSRFVVSRSPNNCYGCATTFVTQCLELLQVLARHPNSKKQLVSAGILSELFENNIHQGPKTARVQARIVLCSLSESDVNAVTELNSLIQKKVLYCLEHHRSMDIAVTTREELLLLSEVCSLADEYWESRLRLVFQLLFSSIKLGAKHPAISEHVILPCLRIISQACTPPKPETPDKEQGLGKSSAKTKDEVSQNVPGSLTGAVSVGGTKTFPDSSERNWDATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA27</accession>
    <name>A0A392NA27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032033">
        <property type="protein sequence ID" value="MCH96311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="21609" checksum="698ADF351809AA53" modified="2018-12-05" version="1">MPPIFRRLPLQLENPKEKRESRLELEVFTNHLEGSDKGQRVRVKIGRGQIQPTKYTDGKDTKRHAKLQVLKNELVHAKPVLEECRTDTLLLKRAVDLPIGRLPVSVLDNRVHPTSRRRNLRGYSSRLWPDPGQLGLRNRVDQTIILRQFYRRFCHVKPEKQRRESEFDNQLNPPFHRKSSERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBX3</accession>
    <name>A0A392NBX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serpin-ZX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017698</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033021">
        <property type="protein sequence ID" value="MCH96709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.497.10">
        <property type="entry name" value="Antithrombin, subunit I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042178">
        <property type="entry name" value="Serpin_sf_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF211">
        <property type="entry name" value="GH10112P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="SERINE PROTEASE INHIBITOR, SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serpin" evidence="2">
        <location>
            <begin position="10"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="20686" checksum="1B65BA36B0C67FF2" modified="2018-12-05" version="1" fragment="single">MTITKHVLSKSEYKENNVVISPLSLQIVLSMVAAGPEGPTQRQLLAFFQSKSISHLNSLSSQLVSYVLIDASGIGGPRLTFANAVWVEKSLSLYPSFKQIVASDYMATIASLDFINKADETTETVNLWTEKETNGLIRDILPPGSIDSLTRLIFANALYFKGAWYQPFDASKTKDYEFHLLNGSSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDH0</accession>
    <name>A0A392NDH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034302">
        <property type="protein sequence ID" value="MCH97185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11622" checksum="E7B53DC63C4D96CC" modified="2018-12-05" version="1">MIINDHQGSWPSAVGYIYNLHNSHKVRIHTQRKPKLHTQTDLSVGVPAGTQPPPLHQGLERSNARRGHSSDQVRSVAKPPSVAIITLKSNHCICHTSTTWATSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEE4</accession>
    <name>A0A392NEE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Topless-related protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018423</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034936">
        <property type="protein sequence ID" value="MCH97428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027728">
        <property type="entry name" value="Topless_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083">
        <property type="entry name" value="TOPLESS-RELATED PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083:SF43">
        <property type="entry name" value="TRANSDUCIN FAMILY PROTEIN_WD-40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="1">
        <location>
            <begin position="72"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="23644" checksum="0919CA5A0F659BE7" modified="2018-12-05" version="1" fragment="single">MIRVPAIYLTVSILKRPRTPSTTPGMVEYQSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGLRERLVSKPFKIWDISACSLPFQAAMVKDTPISVRRVTWSHDGSFVGVAFTKHLIHIYAYNGSNELAQRMEIDAHIGAVNDLAFAHPNKQLCIVTCGDDKLIKVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF03</accession>
    <name>A0A392NF03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transferring glycosyl group transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036265">
        <property type="protein sequence ID" value="MCH97923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038941">
        <property type="entry name" value="At4g14100-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33880">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33880:SF19">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14808" checksum="0FB38E6D00F55275" modified="2018-12-05" version="1" fragment="single">WPEQFHSVLFINSSGNLQKTDLWYDWPNGRNFNIIQHQLGVLKYDLEWNNGTSFIYTLDPFNHTCKILHFDVGILRPNWLDGAXXXXXXXXXXXXCNVWEKVDFIWYFEDVITKRPVKWIFYSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF66</accession>
    <name>A0A392NF66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018187</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034326">
        <property type="protein sequence ID" value="MCH97194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033539">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA dehydrogenase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050741">
        <property type="entry name" value="Acyl-CoA_dehydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48083:SF13">
        <property type="entry name" value="ACYL-COA DEHYDROGENASE FAMILY MEMBER 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48083">
        <property type="entry name" value="MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA dehydrogenase/oxidase C-terminal" evidence="3">
        <location>
            <begin position="2"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16423" checksum="9196A53F2EF58938" modified="2018-12-05" version="1" fragment="single">ARLGPGRLHHCMRLIGAAERGMQLMAQRALNRKAFGKLIAQHGSFISDLAKCRVELEKTRLLVLEAADQLDRYGNKKARGIIAMAKVAAPNMALQVLDMAMQVHGAAGLSSDTVLAHLWATARTLRIADGPDEVHLGTIGKLELELQRAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLE3</accession>
    <name>A0A392NLE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase zeta catalytic subunit-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039923">
        <property type="protein sequence ID" value="MCH99294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="137"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16012" checksum="0BFD3256DC7A52E0" modified="2018-12-05" version="1" fragment="single">MSNNYDKVIPESGYTNLLYPGYTPDQMHQEPDAEDQDVPKCTSGPPLRHSPDQVRQEPGAEDKDVSKCTSGPPLRPELYQDAGTEKKLPCISEGQTEGIKACMDRSQDISQISGPGENSSFTPLSQTGFRDPASVGRGQQLTLLSIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNG4</accession>
    <name>A0A392NNG4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transposase MuDR plant domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041983">
        <property type="protein sequence ID" value="MCI00015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004332">
        <property type="entry name" value="Transposase_MuDR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03108">
        <property type="entry name" value="DBD_Tnp_Mut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase MuDR plant" evidence="2">
        <location>
            <begin position="269"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="340" mass="37709" checksum="E9E083A72B0E6986" modified="2018-12-05" version="1" fragment="single">GPAEGVNENGPAEGVNENGPAEGVKENGPVEGVNEYGPTDDLNDNGPSEGVNETGPTGPTGPTEGDKVGPTTEKGKGVRIDDDVIDDLLNEVEYDEDSEDSALGIHFDDSEEDCLLEDNFDTVADETVVDETVVDENVVDEPVIKGKGKKGKKVRQECNVSKPTSKKGRPKKKNNNSNIYTVVQGAQQTAQGDELFEEDVGNIDKSKYKAFVGGLSDIEDYNSEELDSGSDSDIENEVEDSEDEDEHDTEWPSNYKLPTFKMPSSMRDYKWESGMYFACKQEFQEAIRCYAIQSQRAIKYKKNDKKRIRLICKSGCVWNAYCSHMPGQETWQLMFVKDEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPF6</accession>
    <name>A0A392NPF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044798">
        <property type="protein sequence ID" value="MCI00956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="26"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11772" checksum="C306BA99A4AE0087" modified="2018-12-05" version="1">MQSTASVRARTSQAIKKKQQELKKYQKPLRDRIKKLENDVLNLEEALQKEKDEKQKIFEEMNALRDKNSALEVQLLMAAGDENFQGTLKAIFQAYVKRSRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPS5</accession>
    <name>A0A392NPS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellulose synthase A catalytic subunit 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022917</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047463">
        <property type="protein sequence ID" value="MCI01888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11918" checksum="5EEF8E60F1050004" modified="2018-12-05" version="1" fragment="single">TNPWFSLIAFFFIGKTKDGDDDSDDDDGIKVHETPSTVASQIHNSEEVGGLHARHVSTVSTTDNEQVNEESGNSTWKKIMKSWKGKGKDKKNKNKKDAPTKAENEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS75</accession>
    <name>A0A392NS75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049891">
        <property type="protein sequence ID" value="MCI02691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="28162" checksum="BDD49131BEFF4D70" modified="2018-12-05" version="1" fragment="single">DVIKAVTEFFTTGWLLPNYNANTLILIPKNANADTVDQYRPIAMANFKFKIISKVLADRLAQIMPSIISEEQKGFIQGRNIKDCIFLASEATNLLHSKAFGGNLALKIDIKKAFDTLEWPFLLKVLKSFGFNAIFCNWIECILKSATLSISINGNMHGYFHCKRGVXXXXXXXXLLFCIAEEVLSRNISKLVNDGKLQLIKGTRSCSVPSHCLYADDIMVYCKGNHSNLVALKDLFSRYALASGQYWCLPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS84</accession>
    <name>A0A392NS84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048579">
        <property type="protein sequence ID" value="MCI02264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NS84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="166"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="182"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22883" checksum="30D25B4C8BF1881A" modified="2018-12-05" version="1" fragment="single">VDVPRETVPPAPTVDLYKPKTRKRKVAEEESTKEAKKPKGDKKKSSGSDDRTLAERLKQKIEAEASKESHKQLPKGNSSETIINHTSEAQNDPNLGLTKPLTTILPEHETVYVSSTSTTDTAELDKEADAIIQEGVTKFGEVPNSKSIAKQLFVQEPTPDLKFIEQHLSPDPLNTETFTHEQPQQQQQQQQQQQPQPETNQPAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWG9</accession>
    <name>A0A392NWG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052470">
        <property type="protein sequence ID" value="MCI03529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="21905" checksum="8D3A7A48BA5D0EDB" modified="2018-12-05" version="1" fragment="single">AEVRKKSKILQPVIRRDQASRLEPDIRFGSSGRRTVPTIENNKTRDNKHIYLPADISMESMTNVSFNNTNMGFIGRSGFAPPHLRSAFQTSQAMSSSAGIVSSSPESSLDSPDIHTFRATGADEARHLAGLSAAGAEALKEIPLSRSTSDGYEASGGEDSDQVPSRVVQRIADWSSVLFRADQDERAFRPTLSSSMSHSRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXF8</accession>
    <name>A0A392NXF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053698">
        <property type="protein sequence ID" value="MCI03920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="15"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7273" checksum="F0402F77787B9249" modified="2018-12-05" version="1" fragment="single">MVLWCSPCIGWMKVNTDGSVYSTSAACGGLFRDYLANFRGGFAQKISSLSVLHAEIMALILAMEMAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6I4</accession>
    <name>A0A392P6I4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Stress induced protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0028727</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066199">
        <property type="protein sequence ID" value="MCI07658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6I4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47076">
        <property type="entry name" value="NHL DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47076:SF1">
        <property type="entry name" value="NHL DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="146" mass="17147" checksum="6790A3B40B6E712F" modified="2018-12-05" version="1">MSVYEGRPLVMEMESNKEDFEEINGYGCGCGWFRVFTSKWWQRHDEEGKHLLDEGNRGEETWVMEKLRNMKETSEVIAGPKWKTFIRKISGYGKKQQKNRFQYDAHSYALNFNSGAQSEDEEYLPPSFSTRFSNPFPAASRHQNET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPW1</accession>
    <name>A0A392PPW1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">glycine hydroxymethyltransferase</fullName>
            <ecNumber evidence="5">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0034588</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the interconversion of serine and glycine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010088366">
        <property type="protein sequence ID" value="MCI13470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPW1"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000097">
        <property type="entry name" value="Serine hydroxymethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049943">
        <property type="entry name" value="Ser_HO-MeTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="SERINE HYDROXYMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680:SF35">
        <property type="entry name" value="SERINE HYDROXYMETHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Serine hydroxymethyltransferase-like" evidence="10">
        <location>
            <begin position="13"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00059150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI13470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="227" mass="25104" checksum="60CEDE760EF38D6E" modified="2018-12-05" version="1">MDPVSEWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGLPGNRYYGGNEFIDQIENLCRSRALTAFHLDAANWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNQSTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWL5</accession>
    <name>A0A392PWL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">U-box domain-containing protein 44-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0037593</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100919">
        <property type="protein sequence ID" value="MCI16451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWL5"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052608">
        <property type="entry name" value="U-box_domain_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958:SF15">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04564">
        <property type="entry name" value="U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00504">
        <property type="entry name" value="Ubox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51698">
        <property type="entry name" value="U_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="U-box" evidence="3">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI16451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15509" checksum="DD3285891B72C461" modified="2018-12-05" version="1" fragment="single">MVDPVSLCTGTTCERSAIEGWFYDGNSTDPDTNEVLEDLSLRSNIPLRQSIEEWRELNYCLLIRSIRENLLLNSNLQESLSQMQALIAENSINKDWISIGELTDIVISILGNSNDREVKMKILITLKDAVEGHARNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUC5</accession>
    <name>A0A392UUC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010948479">
        <property type="protein sequence ID" value="MCI78335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="5987" checksum="EBA2B7A63E845901" modified="2018-12-05" version="1" fragment="single">ALATLGVLDEVAGRAVATGSEYLASFRPTSPEGAFSPALFSPVIARPRRASSAGIDITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUX2</accession>
    <name>A0A392UUX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952807">
        <property type="protein sequence ID" value="MCI78535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8066" checksum="73DED1080BCE1753" modified="2018-12-05" version="1" fragment="single">VEEFSGLNFAAYISDEKFLVVLSVEDASGGISLKRKEVFSSDSEYAVYEDATAIFEATVKGSSKKAKVVPIVPSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUY1</accession>
    <name>A0A392UUY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100284</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964110">
        <property type="protein sequence ID" value="MCI79013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="2011" checksum="3EA8E6C432429605" modified="2018-12-05" version="1" fragment="single">MRMEKISLGGENPLCVPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUY7</accession>
    <name>A0A392UUY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010959514">
        <property type="protein sequence ID" value="MCI78809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF97">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6144" checksum="7B12A0F83EEB41CA" modified="2018-12-05" version="1" fragment="single">MRRALGAKMKLEFINGTIPIPDDDFDPTFRAWNRCNMLVSSWILNSVSESIAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWJ9</accession>
    <name>A0A392LWJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000052">
        <property type="protein sequence ID" value="MCH79341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="38"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17430" checksum="7137EEA3CA9C1D9B" modified="2018-12-05" version="1" fragment="single">MSMEIDRCVHTHLDGWTHRNDIIFIGWKQPQEGWFKLNCDGAHKSSIHLSGCGGLLRNNNGICVSSFARKIGSCDALQAEVWGMYIEMDLARRRGITHIQVESDSKVLVDMVTGNCKVNGRIPTLIKRVRALKNLDWHIQINHIWREGNRPAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWY4</accession>
    <name>A0A392LWY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000131">
        <property type="protein sequence ID" value="MCH79471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16511" checksum="F82DDB34A148BC55" modified="2018-12-05" version="1">MWCKEDDSQRFRLTITGGDLTGEASFKLTNEVVRQLAPETCKALSSMPEGGSLYPQELDSFFGDPLLFKYVVMKVLLLEKNNICIGSPLKDYDEIDDFDQLDFAIVRDENELLLLTAKEDVSGSKRKLPEAFGLDDESSKVQKFKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX08</accession>
    <name>A0A392LX08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000092">
        <property type="protein sequence ID" value="MCH79405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="435"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="440"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="466"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="496"/>
            <end position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="697" mass="76649" checksum="1E0EB6039B65A23B" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYA1</accession>
    <name>A0A392LYA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000507">
        <property type="protein sequence ID" value="MCH79930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="12030" checksum="04E282DA8F95A74F" modified="2018-12-05" version="1">MRADLLSKLASTKKPGSHRTVIQETILTPSINVEALMMVIEEEDWRSPIIRYLQKDELPGEKDKTFKIRKMAAWYSMIGDKLYKRGFASPLLLCVSKEESKRIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYG5</accession>
    <name>A0A392LYG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000773</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000592">
        <property type="protein sequence ID" value="MCH80011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18500" checksum="B2CAD275D6E4262A" modified="2018-12-05" version="1">MLNCCSDSGFLVLVTHSPELILSRALLHLVHNRSLDVQKFGRLSQALVNYQKIMRTGVAHPRSDRSTKVPPNLVVHLEHNILPVGLMESDCTEVMIWVASSKGKGTESSSTSPIRCMEHEGRDILTLSTLAGGDHKEIKLNLIVMEPIRSPWILQDVGALFETPAVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYH1</accession>
    <name>A0A392LYH1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000761</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000575">
        <property type="protein sequence ID" value="MCH79999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="132"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="390"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="390"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="550" mass="62992" checksum="1EB7540A55878A9A" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYW2</accession>
    <name>A0A392LYW2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000887</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000711">
        <property type="protein sequence ID" value="MCH80125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF28">
        <property type="entry name" value="F5J5.12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="3">
        <location>
            <begin position="9"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="245"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="509"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="380"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="255"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="518"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="549"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="561" mass="62883" checksum="3137F6933578F671" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZQ2</accession>
    <name>A0A392LZQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001092">
        <property type="protein sequence ID" value="MCH80471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35097">
        <property type="entry name" value="GDSL ESTERASE/LIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35097:SF1">
        <property type="entry name" value="GDSL ESTERASE_LIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8396" checksum="917D838DC3C067A5" modified="2018-12-05" version="1">MNTLNPKSLQWAVTLSDVSEDSFGWGMGLGGIGADHFQAEAYLKFNMGDKFCLKPGFAYATDGNSGIGALMLRSTWSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZZ3</accession>
    <name>A0A392LZZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001325</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001187">
        <property type="protein sequence ID" value="MCH80555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15688" checksum="26057745784A79B4" modified="2018-12-05" version="1" fragment="single">MEARQFMERSSIIKSSQRGDDQIRFASYLILCNERVPYTETTIKEIERMVNSFWWRIGDGTKIKVMSEPWLKRKMAYGCNHHKNKHCRQVEGNNVWNQLKETRQQLGVKAQTHGVYGVTGTLYRTCTTTTTSTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M110</accession>
    <name>A0A392M110_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein gar2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001486</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001393">
        <property type="protein sequence ID" value="MCH80713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="309"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="119"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="133"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="389" mass="42965" checksum="FE4763D25F1220C9" modified="2018-12-05" version="1" fragment="single">KKKKGSKASEGTTSAGVEQLDKLPTTTPEQAQDEALQSPPVQQQDAPSNIPQSEPPQQFESINSCVGDSIMKEQDIDQVDSPPHREQQIPETILEVEENHEKENSSPSKTKISDHQEESTEADLEESLSDSSIPTRSGGSSIPAMTSSTTKLSADIGISPEDFQQLHASNPGEALAKLLQTRGSTDSTASGSQAEGQAKHEALFAKFVXEYIREDAFERLELDPKAFYSMKATLAELQSPYLSESRVTLLTQVESYFDQFGKDLQMLINNREQADAQKMAQTLLWERANASNEKVEQMKKQSHDTVSGVNACKENIANWKEEITQLYVKIGILECKIADEEDKQKLLESQAAAITKEAIDREARVGIEHFSGGKVMEDAINRLNEQSKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1F1</accession>
    <name>A0A392M1F1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Otubain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001051">
        <property type="protein sequence ID" value="MCH80434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1F1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="9191" checksum="285440BF91A27CC4" modified="2018-12-05" version="1">MLWGTVMGAWEAVVEFLSEESYLDDVVEFRKVCEKFPKFVKYVETTILDMLKEKLVRAWTLDRPYCAYWQHNHKQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1Q3</accession>
    <name>A0A392M1Q3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001719</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001671">
        <property type="protein sequence ID" value="MCH80943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1Q3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3343" checksum="9B3AA563128112CD" modified="2018-12-05" version="1">MGGGGATTLTTASSFVVFVLSCRCGAGRRIGVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M284</accession>
    <name>A0A392M284_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="5">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0002219</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 17 18">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the TOP6A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010002292">
        <property type="protein sequence ID" value="MCH81432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M284"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000228">
        <property type="term" value="C:nuclear chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042138">
        <property type="term" value="P:meiotic DNA double-strand break formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000706">
        <property type="term" value="P:meiotic DNA double-strand break processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00223">
        <property type="entry name" value="TOPRIM_TopoIIB_SPO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013048">
        <property type="entry name" value="Meiotic_Spo11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002815">
        <property type="entry name" value="Spo11/TopoVI_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013049">
        <property type="entry name" value="Spo11/TopoVI_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036078">
        <property type="entry name" value="Spo11/TopoVI_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034136">
        <property type="entry name" value="TOPRIM_Topo6A/Spo11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN SPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848:SF0">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN SPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21180">
        <property type="entry name" value="TOP6A-Spo11_Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04406">
        <property type="entry name" value="TP6A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01551">
        <property type="entry name" value="SPO11HOMOLOG"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01550">
        <property type="entry name" value="TOP6AFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56726">
        <property type="entry name" value="DNA topoisomerase IV, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52041">
        <property type="entry name" value="TOPO_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 12 15" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Spo11/DNA topoisomerase VI subunit A N-terminal" evidence="13">
        <location>
            <begin position="71"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Topoisomerase 6 subunit A/Spo11 TOPRIM" evidence="14">
        <location>
            <begin position="174"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="12">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF21180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH81432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="287" mass="32729" checksum="9EB9EA4ABAD94DBA" modified="2018-12-05" version="1" fragment="single">MNREVRGASVSREVRGVVPTEKQILEGTPFTFNIPSCTKYYQLYNPNLNCYVLGDNMSTIIVRQSHRGLNIMFVMDIISRLLIEGKHSTLPYVYYTDSTVFKNQRECDVIINDIACLLRCTRESLNICVSNKGDVIGNLSHTVEEDKVDCSKLSQVIPNLKGLRGLHSNVLFDIVIEKQASFFWLSEDRFFDSILCIRITVKGYPDVNTMMFAKRLGVELKFPAVGLMDSNPSGFHIFYIYKCGSETMSYDAAHLTTPHMKWLGLRLWDVGTYKIPEECSINLTTFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2N0</accession>
    <name>A0A392M2N0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001640</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001580">
        <property type="protein sequence ID" value="MCH80864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2N0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786">
        <property type="entry name" value="DNA BINDING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="2">
        <location>
            <begin position="379"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="464" mass="52911" checksum="5E676EC5345F8C8F" modified="2018-12-05" version="1" fragment="single">DDALSKYNSIEDQFICACNMEEIEVPDNYSEDPLLNSTNEDGQIICASNDEQFHTPTNSDVLDEQPENDSADDDDQAMYAANGIIFTHYLNHGQPDHICPDCGALMWSEERLKKSSKRAPKFTLCCSQGDIEVVPYKQLPQPLHDLYHSDTKRSKFFIDDIRSFNSMFAFTSMGGKINTSMNTGNAPPTFVLNGENYHLIGSLMPPIGDQPKFAQLYIYDTDNEVSNRMAAVGMKDDRLALRSSIVRDIREALNNCDNPYVKTYNTVRDTLHARGTPDIRLKLLGKRGRDGRRYNLPTSTEVAALVVGDFDGEYSDRDVIVEYRSGLLKRISTFEPAYWPLQYPLLFPRGEDGYRKDIEFKDNPKKPARKRQFITHLEWLGYRIQQRNTHNSTIVFSRRLFHQFLVDSFSTVESDRLKYLKHHQQDLRADMYKGLTEAILRGDVDAANSGKRIVLPASFVGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2U6</accession>
    <name>A0A392M2U6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">A2U01_0002139</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002195">
        <property type="protein sequence ID" value="MCH81353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2U6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="16" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="18">
        <location>
            <begin position="2"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="19">
        <location>
            <begin position="520"/>
            <end position="684"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="17">
        <location>
            <begin position="820"/>
            <end position="859"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="16">
        <location>
            <begin position="698"/>
            <end position="736"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="859"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCH81353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="859" mass="99277" checksum="3EE49CE8514342EA" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M337</accession>
    <name>A0A392M337_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Proline-rich family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002681">
        <property type="protein sequence ID" value="MCH81720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M337"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006867">
        <property type="entry name" value="DUF632"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21450">
        <property type="entry name" value="PROTEIN ALTERED PHOSPHATE STARVATION RESPONSE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21450:SF23">
        <property type="entry name" value="PROTEIN ALTERED PHOSPHATE STARVATION RESPONSE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04782">
        <property type="entry name" value="DUF632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF632" evidence="1">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="254" mass="29617" checksum="322F4F0E163E8DFC" modified="2018-12-05" version="1">MYECHQVQKHIVQQLEYLNTIPSNNPTSEIHRQSTLQLELEVQQWHQSFCNLFKAHRDYIESLTGWLRLSLYQFSRNPLSRTAEESKMYTLCEQWHLAVEHIPDKVASEGIKSLLTVIHAIVVQQMEEHKQKKKSDYAFKEFEKKVVQLRSLECKYGPYSMSEQSGSMRRMKDPVMEKRAKVEAFRAKAEEEKTKHEKAVSVTRAMTLNNLQMGCPQVFQGIVGFSSVCTEAFESVYNKAKVAEQERDVKRILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3E8</accession>
    <name>A0A392M3E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Protein MEI2-like 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002676</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Probable RNA-binding protein that plays a role in meiosis and vegetative growth.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002913">
        <property type="protein sequence ID" value="MCH81882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045927">
        <property type="term" value="P:positive regulation of growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045836">
        <property type="term" value="P:positive regulation of meiotic nuclear division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd12524">
        <property type="entry name" value="RRM1_MEI2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd12529">
        <property type="entry name" value="RRM2_MEI2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000063">
        <property type="entry name" value="MEI2-like protein 5 isoform 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000101">
        <property type="entry name" value="Protein MEI2-like 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034453">
        <property type="entry name" value="MEI2-like_RRM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23189">
        <property type="entry name" value="RNA RECOGNITION MOTIF-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0469">Meiosis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="6">
        <location>
            <begin position="206"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="RRM" evidence="6">
        <location>
            <begin position="291"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00058438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH81882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="374" mass="41286" checksum="C212C1A0AB164F8A" modified="2018-12-05" version="1">MLLVRQKGDAMKQSFDPSFFGPSKIPPISIPGTSGHGALEVLSGSDSFHTSSDASLFSSSLPVLPHEKLNLNETENGFQSIDDISTSFKKLHQEEVLNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENLSVGISKLSFSDSSVSNGLPPYSLPNGLGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLCQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRKCVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M443</accession>
    <name>A0A392M443_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Resistance-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003257">
        <property type="protein sequence ID" value="MCH82140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M443"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12302" checksum="9C4E7F97948FF9B3" modified="2018-12-05" version="1" fragment="single">SVWYDIFQWLGVVLVVPHHLFVLFDCLSGYARSKKGFRLIWQTTLWMIWKTRNEEIFANGVKFIKAVVDEIKVMSWRRLCSTAVACSLLVVFCLQFAVVWLCLGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4M8</accession>
    <name>A0A392M4M8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003072</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003434">
        <property type="protein sequence ID" value="MCH82271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF86">
        <property type="entry name" value="VIRAL MOVEMENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="351"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="452" mass="52497" checksum="C63AE7552342FF88" modified="2018-12-05" version="1">MVLNNNEKQGGREPNAHITSLFHNTLNNCDLMDLGYHGDMFTWVDNQENEAHIKERLDRFCASPSWISKFPRCMNYHLLNYTSDHNPILLFFGTNHDFREDTHVQGFIKRFENIWLKDPRCLQIIKEEWNKANGETNNKLQQMFDKVHNWGRATYGNIPRQIKATQNTLQDLKATIPSRETLNLIHQMETKLDGLLYHEEQWWAQRAKVNWLQHGDKNSKFFHFKVSQRNRKNRINFIKDNQGSTLTQNKDIQATFQEYFTDLFTSSNPTNIQETTNVVANRITTHMYDYLNQDFTTAEISYATHQLKGNAAXXXXXXXDGLNALFYQTYWDTIGGDITQSVLHILNNGANRIKGILPDVISPQQSAFLPGRLITDNTLLAFETFHHLNHTRNKKKGLVGIKLDMEKAYDRIEWPFLETTLNTMGFPSRLVQTIMRCVTSVSFSILVNGQPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4Y2</accession>
    <name>A0A392M4Y2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aspartic peptidase DDI1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003683">
        <property type="protein sequence ID" value="MCH82430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4Y2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="311" mass="35403" checksum="50725AAB02FAEA3E" modified="2018-12-05" version="1" fragment="single">MKEILTKKRKYTNDEVIQLDASYSAIIQRTLPTKEKDPGRVTLPFTIGDVNVGKALIDLGSSINLIPLSVIERIGGLDITRTRMTLQLANKSITRPSGMAEDVLVKVKKFMFPIDFVVMDIEEDDDVPLILGRPFMKTARMMIDIDDGVMKVRVQDEEVSFNLWEAMKHSKEKDVCFKLDATEEAILDVRKQIHKLSPLEQALTDAFNELDPDKEKEIEECLKELDVWKEMSPLEAKIEELKDDEKPVEVKLELKTLPSHLKYVFLEEGDNKPVIISSSLSIHEETSLIRVLKENKEAIGWKLSDLKGISP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M597</accession>
    <name>A0A392M597_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">D-aminoacyl-tRNA deacylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003377</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003866">
        <property type="protein sequence ID" value="MCH82567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.50:FF:000001">
        <property type="entry name" value="D-aminoacyl-tRNA deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.50">
        <property type="entry name" value="AF0625-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007508">
        <property type="entry name" value="DtdA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34667">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34667:SF1">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04414">
        <property type="entry name" value="tRNA_deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142535">
        <property type="entry name" value="AF0625-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17679" checksum="061E5E2497B1C095" modified="2018-12-05" version="1" fragment="single">MKSFVNEGLRVLLHGKSIVVEDYLDTRWEEVTGEVVDEVIFLSKHTAASNKPALTVHPIGVPHLREGDVPPQGGKPGWAALPNPRIGPWIRLLKNIAQAHNLVPEFEITLEATHHGPLXNKPTMFLEIGSTEDYWKRQDAAQVMAQLVWEGLGLGGGTDVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5H6</accession>
    <name>A0A392M5H6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003458</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003979">
        <property type="protein sequence ID" value="MCH82647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5H6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="109" mass="12416" checksum="73504D65BC6CE681" modified="2018-12-05" version="1">MVDFVLIKERTLPSTWEPHSPIAPLEVEAHDFSINTSLITLVQNNAFSGGKDENAPQHLVRFLEHCDTFKRQGLPDEVVRLNLFPQSLKGDARIWFDCLQPILSHHGMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6I4</accession>
    <name>A0A392M6I4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0002840</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003127">
        <property type="protein sequence ID" value="MCH82044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6I4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006534">
        <property type="term" value="P:cysteine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009069">
        <property type="term" value="P:serine family amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044272">
        <property type="term" value="P:sulfur compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1100:FF:000003">
        <property type="entry name" value="Cystathionine beta-synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050214">
        <property type="entry name" value="Cys_Synth/Cystath_Beta-Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10314">
        <property type="entry name" value="CYSTATHIONINE BETA-SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tryptophan synthase beta chain-like PALP" evidence="4">
        <location>
            <begin position="73"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="22149" checksum="B9715239220E6AF4" modified="2018-12-05" version="1" fragment="single">IGYSMILDAERKGEITPGKTSQQVVSEPWFGFVGEDVGTHLGENVGFQVLSSSLVVSTVNLATTSVRETCCGKCESVLVEPTGGNTGIALAFVAASKGYKLILTMPASMSLEKRVLIKALGAEVVLTESSKAISGAIRKAEEIVRTTPNAYMLQQFDNPSNPKIHFETTGPEIWEDTQGKIDILVAGIGTGGTISGAGRFLKQQNSKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8D7</accession>
    <name>A0A392M8D7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003714">
        <property type="protein sequence ID" value="MCH82454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16723" checksum="9DB2F78DE892E3E7" modified="2018-12-05" version="1">MGGLGFRDFQAFNKAMIAKQGWRIMDNPDLLVSKVGGWGRKNKVRVMGEPWLRGEEGKWLSSPQVEEAFQLHVNQLMVEGERKWDEQKIQTLFPNERVEIGRWFGRLKLRSRYAMCCGVCREFIPTRDRLLQRHVECSPIGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8J1</accession>
    <name>A0A392M8J1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">uridine/cytidine kinase</fullName>
            <ecNumber evidence="2">2.7.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0003923</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.48" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010004663">
        <property type="protein sequence ID" value="MCH83108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8J1"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004849">
        <property type="term" value="F:uridine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02023">
        <property type="entry name" value="UMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000764">
        <property type="entry name" value="Uridine_kinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10285">
        <property type="entry name" value="URIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00988">
        <property type="entry name" value="URIDINKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribulokinase/uridine kinase" evidence="9">
        <location>
            <begin position="40"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH83108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="19556" checksum="99DEFDE1CF347335" modified="2018-12-05" version="1">MGSSSEVHFSGFHMDGFEKREANTEQPTTSATDMYNQPFIIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLSEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTGPFASFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9P4</accession>
    <name>A0A392M9P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0004343</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for arbuscular mycorrhiza (AM) development during AM symbiosis with AM fungi (e.g. Glomeromycota intraradices).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Secreted</location>
            <location evidence="2">Extracellular space</location>
            <location evidence="2">Apoplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005324">
        <property type="protein sequence ID" value="MCH83518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009609">
        <property type="term" value="P:response to symbiotic bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd02120">
        <property type="entry name" value="PA_subtilisin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04852">
        <property type="entry name" value="Peptidases_S8_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.200:FF:000006">
        <property type="entry name" value="Subtilisin-like protease SBT1.5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.30.30:FF:000005">
        <property type="entry name" value="subtilisin-like protease SBT1.5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034197">
        <property type="entry name" value="Peptidases_S8_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041469">
        <property type="entry name" value="Subtilisin-like_FN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17766">
        <property type="entry name" value="fn3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0052">Apoplast</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 12 16" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <keyword evidence="9 12" id="KW-0720">Serine protease</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="13">
        <location>
            <begin position="52"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="domain" description="PA" evidence="14">
        <location>
            <begin position="301"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="Subtilisin-like protease fibronectin type-III" evidence="15">
        <location>
            <begin position="649"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="11 12">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="11 12">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="11 12">
        <location>
            <position position="473"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR615500-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF17766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH83518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="698" mass="74112" checksum="BA20B6F69BC24C97" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9U1</accession>
    <name>A0A392M9U1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006560">
        <property type="protein sequence ID" value="MCH84277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15128" checksum="5B5F062C6D3A50C9" modified="2018-12-05" version="1">MASCKDKLEAAKILKKGSPLARNVHEVDYQFRHVAVKEVKDMKNALEEVEAYGKMDCGNPKILRMHDYIVNPGNPGSVDIILEKAGCSLPELINKFYWNQDPDSDYTSALKISFLKKKFDLGPEGKSSLLLTXQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAU7</accession>
    <name>A0A392MAU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006515">
        <property type="protein sequence ID" value="MCH84249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="227" mass="26196" checksum="147FCAFF5479D8E7" modified="2018-12-05" version="1">MDGGFLLLPYHKSNKPVTGKQPLESLTSESECPNRGFLFSCMRLPSSFIQIKGSFIGKASGWRLGFAMAQWTRASFILDSIQTKGEVIIVNLTCNRTKKKELTHYHSRSYWRTNYDKGAQIQVAKSPLTNRLEDPRMKFHRIEIYQLRTIDIINIQSLPKRRSFDRMKSMLGSCRFDEKERHSRSFTCDRDRITERERMGPDLQPTTGTCLALARLIPACLLPTFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAW4</accession>
    <name>A0A392MAW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monothiol glutaredoxin-S16 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007149">
        <property type="protein sequence ID" value="MCH84647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005759">
        <property type="term" value="C:mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004480">
        <property type="entry name" value="Monothiol_GRX-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10293:SF45">
        <property type="entry name" value="BIFUNCTIONAL MONOTHIOL GLUTAREDOXIN-S16, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10293">
        <property type="entry name" value="GLUTAREDOXIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9346" checksum="64FE2B8869824BA4" modified="2018-12-05" version="1" fragment="single">MEECIKVSGKVPPGNESTWTRQQPKKKPDLRLTPGHHVQLTVPLEELVDKLVKENKVVAFIKRSRSAPLCGFSQKVIGILEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB28</accession>
    <name>A0A392MB28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005552</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007262">
        <property type="protein sequence ID" value="MCH84717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006566">
        <property type="entry name" value="FBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF34">
        <property type="entry name" value="EMB|CAB62440.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08387">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00579">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FBD" evidence="1">
        <location>
            <begin position="140"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="24528" checksum="7B2F58DA71118AB3" modified="2018-12-05" version="1">MDFHLEEDSLTLHEFKRLSLPKLTRAELVEFHCRCFPVNALSTANYLCINTLKVLNIAEYLYTEDHRVYQVNQLQRPYDVVPIFHNLTHLELHNRWDLAVQVLYQCPKLQNLKVYKELCDSKRYEVGDQENWMEPEFVPQCLLSSLRKFTSADYSDLQSELMLEQYILKNARILQTMIIRCMAEQPEMKRTLSMCPVASATCQITLDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBB1</accession>
    <name>A0A392MBB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007274">
        <property type="protein sequence ID" value="MCH84726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8372" checksum="F9104C0BB80F6FEA" modified="2018-12-05" version="1">MNICASQLDNRSSSYDRYIGSCSAENLPGWLRLAEMGLFWGKICPGYLRLAGMMLRLAKDTVHRVKNVDCLLTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC42</accession>
    <name>A0A392MC42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005857</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007771">
        <property type="protein sequence ID" value="MCH85016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF30">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="493"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="578" mass="64112" checksum="E630DA96E3A3C1DF" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDF3</accession>
    <name>A0A392MDF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HR-like lesion-inducing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005634</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007389">
        <property type="protein sequence ID" value="MCH84798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008637">
        <property type="entry name" value="HR_lesion"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31474">
        <property type="entry name" value="HR-LIKE LESION-INDUCER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31474:SF4">
        <property type="entry name" value="NICOTIANA LESION-INDUCING LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05514">
        <property type="entry name" value="HR_lesion"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12173" checksum="8F68D06A260CECDA" modified="2018-12-05" version="1">MYVARFNDFDATGGPISKELIPKLTVVRKNLSSKLGVAIPDFNVSYVRQVAATIIFLKGVGGILFVFGSTFGSFLLAAAREYEALGHGPNATAASMMKGLPLVWICGVIYNLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME23</accession>
    <name>A0A392ME23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Protein IQ-domain 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0005366</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. Recruits calmodulin proteins to microtubules, thus being a potential scaffold in cellular signaling and trafficking. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Binds to multiple calmodulin (CaM) in the presence of Ca(2+) and CaM-like proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the IQD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006970">
        <property type="protein sequence ID" value="MCH84534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.190:FF:000062">
        <property type="entry name" value="IQ-domain 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295">
        <property type="entry name" value="IQ-DOMAIN 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295:SF6">
        <property type="entry name" value="PROTEIN IQ-DOMAIN 18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00045534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH84534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13824" checksum="D46942B29ACB4D58" modified="2018-12-05" version="1">MVTTATAQAAVATAQAAVEVMRLASPSKIARKYYNAAVVIQTAFRGYLARRALRALKGIVKIQALVRGHNVRKQAKMTLRCIESLVRVQTRVRDQRRRLSYEGNKESNFGVSNSLREIHVSRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME82</accession>
    <name>A0A392ME82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009160">
        <property type="protein sequence ID" value="MCH85800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="92"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17506" checksum="D8EF060FE1B09913" modified="2018-12-05" version="1">MSQSNPPVEETQSSPPPSSKISKPTTHLVYSKSKSTNTQTVRRSARIPSGIGTAKNTAIVKTIYEIIDDNSEEDESLSIRHTKPLSQIIEPSKTTQTSKSXXVKPKNARKSFITHLEKYMADKGKEKEESPKTTEGSEDKENPKEAKENLQKLKFQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF69</accession>
    <name>A0A392MF69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006574</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009023">
        <property type="protein sequence ID" value="MCH85725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008">
        <property type="entry name" value="LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008:SF2">
        <property type="entry name" value="LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="237" mass="26354" checksum="59ED2AE097325044" modified="2018-12-05" version="1" fragment="single">MLHVSAQEYGRCPTSFSCGYLGNITFPFTVTKSPHSGVLALSGCDHNDTTAIKSIQLGKTPSEQSLIVTYVDRDIITVIDEAQRNNLRSKNCRAFHNLTLPPTSSLASFYIKYNITMFKCNHSLSVTPPKLYVKYANCSGYNIYYDPQNVDKPPGFKVPSSLAQCTVFQVATRDLPSYDPFDFLSPGISIEVQLSDDCNKCRRHQGGRCQLDIHGKFLCDQGSRIWLLKILVLGVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFM6</accession>
    <name>A0A392MFM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lysine-specific demethylase 3B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006406</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008741">
        <property type="protein sequence ID" value="MCH85558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032454">
        <property type="term" value="F:histone H3K9 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045109">
        <property type="entry name" value="LSDs-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549:SF11">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="39667" checksum="268B03D7079AC23E" modified="2018-12-05" version="1" fragment="single">YPHLKEDDIAEKCPVCCDNCNCKACLQSSKLINAIKTKKGAKNDHEVELSKYMLKNLLPYLTRLDQEQMVEKEIEAKRQGLPLSELKIKVADLFKDERVYCDNCKTSIFDYHRSCTECSFDLCLLCCCELRRGQLLGGADPYDFKFISRGKDYLHGGKAEEITREKVSHDEIREWSKSRWHADSDGNIPCPKANNGCDHGYLELRIILEPNYISELVCKAKKLAETIKLQEAEEPLDNRCSCLKSVRNADDIHNNTREAAFREDTSGNILYCPRAIDLHHEGLRHFQWHWSKGEPVIVRNVLESSSGLSWEPLVMWRAFRQRRKSKNDSLYDVKALDCLDWCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH22</accession>
    <name>A0A392MH22_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Protein PAT1-like</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010958">
        <property type="protein sequence ID" value="MCH86792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000290">
        <property type="term" value="P:deadenylation-dependent decapping of nuclear-transcribed mRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033962">
        <property type="term" value="P:P-body assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039900">
        <property type="entry name" value="Pat1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21551">
        <property type="entry name" value="TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21551:SF25">
        <property type="entry name" value="TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="80"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="522" mass="57406" checksum="B8BAB8529627D825" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH27</accession>
    <name>A0A392MH27_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007676</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010990">
        <property type="protein sequence ID" value="MCH86816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="254"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="384"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="124"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="149"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="187"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="384"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="432" mass="49668" checksum="BA682E6FEAC94B87" modified="2018-12-05" version="1" fragment="single">RQAPQFATQASIPANNIFSSIIACPDRNHQTPPLHDAYPQNTAENHIPNQPRRASQEQQINDMFSTMFTLFQQQTARLSYVEQNQQTVPQMVNNHAQNSLCNVLQDEVSSQQRRTGQRGPQTEAIINTNGNNAQVNNETGIVEPNGTKNTNDQGNGNRENNGNGRQGRNSPNPNSSDNGSSGDYPYEDGRRREPNRHPGRTPFTLKILETRIPRTLKKPPKLEIYDGTTDQDEHLKYIDTVLDYYQSQGAKKCRLFVLTLKGAAMTWFKGLEDDSIDSWRELCKAFSSHFIARKRQPKTMASLSNIVQGREESLRDYIERFTREAIEIKGAYDKLECYIFEKGLRNDTKFKEKPGLKEPRDMQDLLSCAQNYINYEEKMLGEKPEKAKIQPRKYERTREERGRRIPRGGYPEYTPLNTSREKILQDCLNTEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHY8</accession>
    <name>A0A392MHY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010781">
        <property type="protein sequence ID" value="MCH86695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10368" checksum="D4545551E7F225BA" modified="2018-12-05" version="1">MLRRRRKKSEKEISTSKQNKAQKKLKCKQEESSESGKTDSDYAEFLKTYDPKEETGSDEEVTQKLPRIKKSKRKDSKLPESVQDSNSLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ55</accession>
    <name>A0A392MJ55_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0008079</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010011752">
        <property type="protein sequence ID" value="MCH87213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000075">
        <property type="entry name" value="Probable serine/threonine-protein kinase WNK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050588">
        <property type="entry name" value="WNK_Ser-Thr_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13902">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="1"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH87213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="29373" checksum="AFA83F1327858A4F" modified="2018-12-05" version="1" fragment="single">YRAFDEVNGIEVAWGQVQIDELLKRPGDLDRLYSEVHLLKSLRHNNILRFYNSWVDDKRKTVNMITELFTSGSLRHYIYTYEILVGTPEFMAPEMYDENYNELADIYSFGMCMLELGIMPVALSKVIDPDIKAFIEKCLVPASQRLSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRCMLSEGPAGAHIEAVSMDLCDTNKLPVITVLDNSTIDVSSSPTVEIRRLKGGDTYFLKGDQNDENSVSLVLRIADQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ66</accession>
    <name>A0A392MJ66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">U-box domain-containing protein 44-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012427">
        <property type="protein sequence ID" value="MCH87550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052608">
        <property type="entry name" value="U-box_domain_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958:SF12">
        <property type="entry name" value="OS01G0948500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="48"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="390" mass="43543" checksum="CF26B4EFC58EC452" modified="2018-12-05" version="1" fragment="single">MKVLTDEVVSFAKNSEIEAEAFSEFGMLLEKLPPILNELNDNSTILDKPSIRKSLESLENELQRAKTLTKSSNLRHPIKQIEDMTHDIGRSLGVLLVASLEVSIDFREKIGTLQRQMMNARFDGSSSITSSPKSELFANETKTVWEIEEEIVNVSIDDVILQLKNGSDEEFAVSLLRLKEFMRSEKLDGVLINEEAIIAILFKRLVSCKADNRLSIIQLLRSIAFQNDEKKEKMVEIEFLSAVVKSLTRDSEERREAVGLLLDLSNVSAVRRRIGRIQGCIVMLVAILNGDDPVASHDAAKLLDILSSNNQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLTLGEDGAIEPLVKMFITGKLESKLSSLNALQNLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJM0</accession>
    <name>A0A392MJM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008570</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012731">
        <property type="protein sequence ID" value="MCH87692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02120">
        <property type="entry name" value="PA_subtilisin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="5">
        <location>
            <begin position="26"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="277" mass="29063" checksum="536B505980DE75BA" modified="2018-12-05" version="1" fragment="single">KLIGARFFSSAYEAYNGKLSTWQLTARDFVGHGTHTLSTAGGNFVPGASIFAIGNGTVKGGSPRARVATYKVCWSLTDVAKCFGADMLAAIDQAISDGVDIISLSAAGNNLVYPEDIFTDEVSIGAFHALSRNILLVASAGNDGPDLGTVTNVAPWVFTIAASTLDRDFSSTITFGNNRKVTGASLFVNLPPNQAFSLILSTDGKLANATNDDARLCKPGTLDPSKVKGKIVGCYREGNIRSVTEGLEASTAGAKGMLLRNRPKQGKTILAEPHVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK53</accession>
    <name>A0A392MK53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012254">
        <property type="protein sequence ID" value="MCH87465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6315" checksum="B21C56469B15DDBD" modified="2018-12-05" version="1">MASISMAVAPRCIKNACGEGECFGYTSVSCIEDFYNGGEDSYREXDDDDDGGYDYAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKS7</accession>
    <name>A0A392MKS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008196</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011980">
        <property type="protein sequence ID" value="MCH87328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000242">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:001215">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:001365">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein At1g25360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF347">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81901">
        <property type="entry name" value="HCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="106"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="241"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="304"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="405"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="440"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="517"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="517" mass="57380" checksum="7D9433209D41F4C1" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLJ9</accession>
    <name>A0A392MLJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ADP-ribosylation factor GTPase-activating protein AGD12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011634">
        <property type="protein sequence ID" value="MCH87154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005543">
        <property type="term" value="F:phospholipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08204">
        <property type="entry name" value="ArfGap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.150">
        <property type="entry name" value="Arf GTPase activating protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044518">
        <property type="entry name" value="ARF_GAP_AGD11/12/13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001164">
        <property type="entry name" value="ArfGAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038508">
        <property type="entry name" value="ArfGAP_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46220">
        <property type="entry name" value="ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46220:SF1">
        <property type="entry name" value="ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01412">
        <property type="entry name" value="ArfGap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00405">
        <property type="entry name" value="REVINTRACTNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00105">
        <property type="entry name" value="ArfGap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="ArfGap/RecO-like zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50115">
        <property type="entry name" value="ARFGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Arf-GAP" evidence="2">
        <location>
            <begin position="10"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11687" checksum="2617CFC1F13BFE5E" modified="2018-12-05" version="1" fragment="single">MLQILNGRRSANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDANPEQRSKFIRSKYELQEFLKPSLRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM57</accession>
    <name>A0A392MM57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008243</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012072">
        <property type="protein sequence ID" value="MCH87374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004158">
        <property type="entry name" value="DUF247_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31170">
        <property type="entry name" value="BNAC04G53230D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31170:SF20">
        <property type="entry name" value="DUF247 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03140">
        <property type="entry name" value="DUF247"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="452" mass="51310" checksum="F31486476441D704" modified="2018-12-05" version="1" fragment="single">ISIVPEKLKNSSNEDAYMPRVVSIGPRFKGSREDLLLMEEVKLRSMLSLLHRAGKAGESKTYLQKCSKAIWKINKQVRASYVSNIKVENNELAKIMLVDGCFLLELMIANKLESQLPSRLCPSGPAHDVLKDEDVLSDLMLVENQIPILVLHILSKILFPNVFDPTRKEERAKKINSLALSVLGYSPLHLPCLESPHILDLVYFFVNGSTVARTGTPTQEEDHVVLDIFDTTHTRQQQLRLKRCALRLLTAGVTIKVKLPEDKDSTGFGAVSCFRLVWNSFCGMLFWLCNIFLVNGKHMDLDRIPEEVEVKGLDFYFKFEKGKLEIEQLHITNTTKAKWCNLIAWEHHKKNWKSSSSMVSGYESSDDENLVSTSSPSGKFTWAALIFNGLICSADDIQLLKDRKVVVDHLRMSNQELMEFFSKIASGVDHGVVDYRSYIEMVDDINNFSKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM65</accession>
    <name>A0A392MM65_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013440">
        <property type="protein sequence ID" value="MCH88069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="143" mass="16405" checksum="7766D5F066F3EB26" modified="2018-12-05" version="1" fragment="single">MAIEANVAEDMVFETNTTENGKVLPKMQRLDCIYDDEPLGFEKDPSSSNQKMQSQDPLQEIDIGDGSIKRPTFISANISPEMKVKLVKLLMEYKDCFAWDYNEMPGLSRDLVEHRMPLLPDKKPVKQLPRRFAPEIMSKIKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMD1</accession>
    <name>A0A392MMD1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0009557</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010014611">
        <property type="protein sequence ID" value="MCH88666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16461">
        <property type="entry name" value="RING-H2_EL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044600">
        <property type="entry name" value="ATL1/ATL16-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001841">
        <property type="entry name" value="Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46913">
        <property type="entry name" value="RING-H2 FINGER PROTEIN ATL16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46913:SF8">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13639">
        <property type="entry name" value="zf-RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00184">
        <property type="entry name" value="RING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50089">
        <property type="entry name" value="ZF_RING_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 9" id="KW-0863">Zinc-finger</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="37"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="RING-type" evidence="11">
        <location>
            <begin position="130"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH88666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="340" mass="38902" checksum="ED0814DDC24F6F31" modified="2018-12-05" version="1">MAMNKNQFYKLGYQALPPIITQASTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTIWNRGLDEAVIREIPSFQFIKEECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTTNTSFDIIIAPSSSPQDSQLLSNLGNDEDFVVIELGGRENEVQQERNYSRGSIVHSRNYHSARKMKPIKCHHVSIMGDEYIDIIRKKDDTFSIQPIRRSFSMDSANDRQVFXXXXXXIQQNRYNQNDASASEDCNSRTKRAFLPFCYGKESKNAFLPLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMJ5</accession>
    <name>A0A392MMJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cullin-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008769</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cullin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013096">
        <property type="protein sequence ID" value="MCH87888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031625">
        <property type="term" value="F:ubiquitin protein ligase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1310.10">
        <property type="entry name" value="Cullin Repeats"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045093">
        <property type="entry name" value="Cullin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001373">
        <property type="entry name" value="Cullin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11932">
        <property type="entry name" value="CULLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00888">
        <property type="entry name" value="Cullin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cullin N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15239" checksum="8B7AA877EA302542" modified="2018-12-05" version="1" fragment="single">HIIDEGTALVQLAEESASNQKTTNGSGFQVLVSKFIELHDKYMTYVNNCFMYHTLFHKALKEAFEVFCNKTVAGSSSADLLSSFCDKILKKGGSEKMSDEVIEDTLDKVAFDHLCFLHRFCISIVLPKLWNFYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMR0</accession>
    <name>A0A392MMR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009270</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014072">
        <property type="protein sequence ID" value="MCH88385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338:SF32">
        <property type="entry name" value="OS06G0287500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338">
        <property type="entry name" value="TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="5">
        <location>
            <begin position="6"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="NB-ARC" evidence="4">
        <location>
            <begin position="166"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23038" checksum="65772D13CABA66AD" modified="2018-12-05" version="1" fragment="single">MADSSVSFLVDKLSSLLKEEVNLQKGVREDVEYIKDELEGLKAILMVADDSLEDKNRVLKVWVERVRNIAEDMEDAIDEYDLSLVDHQQGNNICYFQEICFYLKTLKARHIIASDIKGIKSKVEVILQRRPNISGVGSSSSKRRSPRLDSQGDALLQEEADLVGIEQPKKQLCDMLFKNETNRVVISIYGMGGLGKTTLAKQVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP31</accession>
    <name>A0A392MP31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014703">
        <property type="protein sequence ID" value="MCH88719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="347" mass="39290" checksum="37CB0A7FE195CB3F" modified="2018-12-05" version="1">MKDLRPISLCNVVYKMVAKLLANRLKGCLSKCVSEEQSAFVEGRSILDNALIAIEIIHALKRKTRGNKGELALKIDISKAYDKVDWTFLRGVLSRMRFEERWIHWVMMCVSSVHYSVLVNSERVEPIQPGRGLRQGDPLSPYLFIFVAEGLSTLINKAVARGDIHGEQICRGAPMVSHLFFADDCFLFCRANIAEAQHIMEILRLYTEASGQEINMNKSEVFFSGNISRPAQEDLSRIMGVRHMLGTGTYLGLPSMVGRSKKETFTYIKDRVWKRINSWRGIPLSKAGKEVMIKSVLQAIPSYVMSVFIIPDATVNDIKMMLNSFWWGGGNNNKGIRWFVMGNDDLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPH6</accession>
    <name>A0A392MPH6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">NEDD8-activating enzyme E1 catalytic subunit</fullName>
            <ecNumber evidence="8 11">6.2.1.64</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0010306</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalytic subunit of the dimeric E1 enzyme, which activates NEDD8.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 11">
            <text>ATP + [NEDD8 protein] + [E1 NEDD8-activating enzyme]-L-cysteine = AMP + diphosphate + [E1 NEDD8-activating enzyme]-S-[NEDD8 protein]-yl-L-cysteine.</text>
            <dbReference type="EC" id="6.2.1.64"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Protein modification; protein neddylation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the ubiquitin-activating E1 family. UBA3 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.64" evidence="8 11"/>
    <dbReference type="EMBL" id="LXQA010016099">
        <property type="protein sequence ID" value="MCH89410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPH6"/>
    <dbReference type="UniPathway" id="UPA00885"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019781">
        <property type="term" value="F:NEDD8 activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045116">
        <property type="term" value="P:protein neddylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.520:FF:000001">
        <property type="entry name" value="NEDD8-activating enzyme E1 catalytic subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.520">
        <property type="entry name" value="Ubiquitin activating enzymes (Uba3). Chain: B, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023318">
        <property type="entry name" value="Ub_act_enz_dom_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033127">
        <property type="entry name" value="UBQ-activ_enz_E1_Cys_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953:SF6">
        <property type="entry name" value="NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="UBIQUITIN-ACTIVATING ENZYME E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="Activating enzymes of the ubiquitin-like proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00865">
        <property type="entry name" value="UBIQUITIN_ACTIVAT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="THIF-type NAD/FAD binding fold" evidence="12">
        <location>
            <begin position="1"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="active site" description="Glycyl thioester intermediate" evidence="10">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH89410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21311" checksum="6C522C4DDE39AAD9" modified="2018-12-05" version="1">MVDGGTEGFKGHARVIMPGITPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHRGVPFDPDNPKNMKWVYDEAVKRAELFGIPGVTYSFTQGVVKNIIPAIASTNAIISAACALETLKIATACSKTLSNYLTYNGSEGLHTKVTEFERDKDCLVCGPGIRIELDPSITLQKLAINLKPYRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPJ0</accession>
    <name>A0A392MPJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RPM1-interacting protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010352</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016184">
        <property type="protein sequence ID" value="MCH89456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040387">
        <property type="entry name" value="RIN4/NOI4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008700">
        <property type="entry name" value="TypeIII_avirulence_cleave"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33159">
        <property type="entry name" value="RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33159:SF95">
        <property type="entry name" value="RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05627">
        <property type="entry name" value="AvrRpt-cleavage"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RIN4 pathogenic type III effector avirulence factor Avr cleavage site" evidence="2">
        <location>
            <begin position="8"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8142" checksum="FFD19FD366AEEDB3" modified="2018-12-05" version="1" fragment="single">MASYSEQDGKPLPKFGEWDVNDPASAEGFTVIFNKARDEKKIASASGRFPSQRRYDSRTGRGKDNKKLNSSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQA3</accession>
    <name>A0A392MQA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016608">
        <property type="protein sequence ID" value="MCH89657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8437" checksum="CE150FADF7ADA0F6" modified="2018-12-05" version="1">MKFMKNSWANLAEIEDEEIDNIEVAFTVAVKSNPLQPIEEPFQEVVSKKKSKKNKAANNKAYSTRYKVDQSSGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQE7</accession>
    <name>A0A392MQE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009393</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014285">
        <property type="protein sequence ID" value="MCH88504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045030">
        <property type="entry name" value="LYSM1-4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20932:SF8">
        <property type="entry name" value="LD22649P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20932">
        <property type="entry name" value="LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13074" checksum="94E706F85DD220FA" modified="2018-12-05" version="1">MMSDHGIYSRERLLIPISNPDILVKRTCFIELDVYAKREVAVLYPDDVPDIKSTHVSNRISSEESNKKVLDSLKRSMQVDSETAQYYWSVSNGDPRAALAEFSADLQWGRQVGHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQG1</accession>
    <name>A0A392MQG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016891">
        <property type="protein sequence ID" value="MCH89786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042138">
        <property type="term" value="P:meiotic DNA double-strand break formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044969">
        <property type="entry name" value="DFO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37176">
        <property type="entry name" value="F10K1.23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37176:SF1">
        <property type="entry name" value="PROTEIN DOUBLE-STRAND BREAK FORMATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25439" checksum="E2ED25B60DB608BD" modified="2018-12-05" version="1">MSHSVEQQLSLFRYLIQTRSFGNATLRFLDSLLVSKDVKSLVEIRSSLTQLLKSESLSIIQSIAAESVHDKLLVLEFFVRAFALVGDLESCLALRYEALVMREIKSASFQLLQVSPVEWLKFVEDAVQNGFHAVAVKACENALRCVGNDDVQKLGRDAVPEKLKATTITEITRLRNFAMTSITSRSGISLSTALNIHAIIVLAXXXXXXXXXXXXXXXXRPQYNAFIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQW9</accession>
    <name>A0A392MQW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016655">
        <property type="protein sequence ID" value="MCH89683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="244"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="321"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="341"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="428" mass="48211" checksum="11FABEDEE4EED58E" modified="2018-12-05" version="1" fragment="single">YDGEDQGNVIAEPVGEREIVTQSNDNPPHYFYVYANILNIFNLWFPLTSFEDTVLRILNVAPTQLHPNSWGFTKAFEIACMGLKIKPRLGVFFSFYYIQSLRKGRKVSLSAHPSRGLFYLFRNNFKNYHDSFFKLRCGPGFDQLMYDVNGNPLFPFYWTDNPVAIQGVNEHHWTPFEAKTVAFLEKFKTMRIKDLLKCERDSEKLTAYLRKMSTASDSEWMAFLELAEQQVNNPDAVVPPEQQLIVKDSAPSKRKSDTPDTEASKLHKTEGGSSKQVSVSEDESKETKGRNTRHRLKVKGDVHKASATSSPSAKGDAKNVKXXXKGTGTKSIPKINLPLSGKTSIPSSQGDNTGVDPNLSFNARAFLDQLPMKEHLSSFNYMSSTELRNTILGCEMKGMLLTDLLCNRQEQEAVHAHSAAQSMKESLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRI3</accession>
    <name>A0A392MRI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein tas-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011087</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017759">
        <property type="protein sequence ID" value="MCH90176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050523">
        <property type="entry name" value="AKR_Detox_Biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43364:SF4">
        <property type="entry name" value="NAD(P)-LINKED OXIDOREDUCTASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43364">
        <property type="entry name" value="NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15259" checksum="C3B132B8A6ABD1D0" modified="2018-12-05" version="1" fragment="single">DLVEVCHPKNCNIGLLSYSPLGGGALTGKYIDINSAAAKRGRLNLFPGYMERYNKSIAREATIKYLELAKKHGLTPVQLALGFARDRPFMTSSIIGATSVEQLKEDIDAFTTTERPLPAEVLADIEDIFKRYKDPTIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRM1</accession>
    <name>A0A392MRM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Linoleate 13S-lipoxygenase 3-1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010998</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the lipoxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017565">
        <property type="protein sequence ID" value="MCH90091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020834">
        <property type="entry name" value="LipOase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020833">
        <property type="entry name" value="LipOase_Fe_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00711">
        <property type="entry name" value="LIPOXYGENASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00081">
        <property type="entry name" value="LIPOXYGENASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoxygenase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21593" checksum="B95701EA3A432DDA" modified="2018-12-05" version="1" fragment="single">AIDENKLYIIDYHDIYLPFLERINALDGRKSYATRTIYFLTPLGTLKPVAIELSLPPSGPNTPSKRVVTPALDATTNWTWMLAKAHVCSNDAGVHQLAHHWLRTHASMEPFILSAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLIHADGVIESCFTPGRYAMEISSAAYKASWRFDKESLPQDLIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRW7</accession>
    <name>A0A392MRW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thymidylate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011102</name>
        <name evidence="4" type="ORF">A2U01_0012761</name>
    </gene>
    <organism evidence="3 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thymidylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017790">
        <property type="protein sequence ID" value="MCH90191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010021257">
        <property type="protein sequence ID" value="MCH91831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:dTMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006227">
        <property type="term" value="P:dUDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10344">
        <property type="entry name" value="THYMIDYLATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10344:SF1">
        <property type="entry name" value="THYMIDYLATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate kinase-like" evidence="2">
        <location>
            <begin position="23"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10103" checksum="7705C1F5BE6F977A" modified="2018-12-05" version="1" fragment="single">MQANLSCSKDGNNKESRGALVVLEGLDRSGKSSQCSRLVSYLEGQGLSAELWRFPDRTTNVGQMISAYLTNASQLDDHTIHLLFSANRWEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSD8</accession>
    <name>A0A392MSD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone-lysine N-methyltransferase ATXR3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017723">
        <property type="protein sequence ID" value="MCH90162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46655">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46655:SF1">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="275" mass="31835" checksum="74F5AAB0872B721A" modified="2018-12-05" version="1" fragment="single">MLARVFHFLRSDLKSLVFASMTCKHWKASVNFYKEVSRNVNLSSLGHSCTDSIMWNIVNTYKKDKIKSMILMGCTNITADMLEKIILSFSGLSTLDIRGCNQFEELTPKFTNLKWIKSRNSRITKIADEPHKIRSLKQISDHSLSGSKASSLGIRDDFGELKVYFDSVDKRDTAKQLFRQNLYKRSKLYDARKSSSILSRDARTRRWSIKKSESGYKRMEEFLASRLREIMKANACDFFVPKVAEIEAKMKRGYYNGHGLSSVKEDIRRMCRDAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT00</accession>
    <name>A0A392MT00_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011582</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018800">
        <property type="protein sequence ID" value="MCH90660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="61"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="248"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="271" mass="31040" checksum="B8F3D0010A55DBBD" modified="2018-12-05" version="1" fragment="single">MLLEEFHSTPMGGHYGFLRTYRRLADTIYWVGMQKHVRDFVRACDTCQRQKYVATTPGGLLHPLPIPNQIWEDLSLYFITSLPKSKGYDVVLVVVDKLSKYGHFILLKHPYTVKSIAELFMKEIVRLHGIPQSIVVDRAGEVAYRLKLPDDSKIHPVFQVSLLKHAIGNYKVQEALPKELELLAEEDHYPVKVLGSRVTIREGVAVPQSLVQWKNKFLEDVTWEDTDVMRGQFPEFILEDKDAFQEGSIDRGGVANNENEDVGLEIRPKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT28</accession>
    <name>A0A392MT28_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">glycerophosphodiester phosphodiesterase</fullName>
            <ecNumber evidence="2">3.1.4.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0011612</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a sn-glycero-3-phosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12969"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:83408"/>
            <dbReference type="EC" id="3.1.4.46"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycerophosphoryl diester phosphodiesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.46" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010018869">
        <property type="protein sequence ID" value="MCH90690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008889">
        <property type="term" value="F:glycerophosphodiester phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.190:FF:000011">
        <property type="entry name" value="Glycerophosphodiester phosphodiesterase GDPDL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43620:SF7">
        <property type="entry name" value="GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43620">
        <property type="entry name" value="GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="GP-PDE" evidence="8">
        <location>
            <begin position="38"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH90690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="22551" checksum="69412F1A4A171ACF" modified="2018-12-05" version="1" fragment="single">DYGDLTVDGVLTDFPISASEAIHCFAHQSTNATRRDNTLIISKYGASGDYPACTDIAYKQAISDGVDVLDCPVQMSKDGTPFCLSSTDLLESTTVAQTSFRNFVMRIPEIKSNPGIFSFNLTWTDIKGLTPLTMNPFAANYTLFRNPKYKNAGNFVTLSDFLSLTKTQTSLSGIMIIVENAAYLAEKQGLGVTDAVIDALSKAGYDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTS5</accession>
    <name>A0A392MTS5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aspartic peptidase DDI1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018286">
        <property type="protein sequence ID" value="MCH90425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF39">
        <property type="entry name" value="TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR CCHC(ZN) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="427" mass="48581" checksum="ED62E3BE89D5FC35" modified="2018-12-05" version="1" fragment="single">MQSSRAEIQHLAKEISSIKEEQSNHPKKETPEKALEEEPDERIELTAENEPTVKGKPKSAPIQPIVYTTEKPQTIVTPYPPKYEKKEIIKEQNKKFEGYLTQMEINVPLKDMLQISPPFHKYVKNLVGGKPQLPEKGNIMLKEECSALLQKTLPRKCKDPGSFTVPCTIGGVEIGRGLCDLGASVNLMPLSIMKKLDCREAKPTRMTLILADRTKVYPYEILEDVLVRVDDTIFPVDFVIMDIEEDEEAPILLGRPFLTTGKALIDMETCEIKFRVDGKEVSFNLNNMVQPKKTPECYQIDLIDTLIKEQQETSXXXXXRVLIQSIEQEEEGEDEETNMSVKWLKDPNEVPSRYESLKFDPEEKPKPLELKELPPHLKYVFLGEEKTQPTIISNALSKEAEEKLLLILKKNKAALGWSIDDLKGISP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUH4</accession>
    <name>A0A392MUH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012072</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019807">
        <property type="protein sequence ID" value="MCH91147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18206" checksum="C0C9681647EA372D" modified="2018-12-05" version="1" fragment="single">MTWSIHIPSERRFSHLTVNLRLCRASSPMAGQTHWAKGTRPVHNPPSIRPRMGCSALKRSELAKPPLLSCLFAYLLMTSLATHHFSRLMITEIYVNPPNFAINRTLRVAALVATLKDLLQEDFSYVVEDLGAVEPFFEAIEGLQGLSTHLSPDQRALLEQTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUQ6</accession>
    <name>A0A392MUQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein argonaute PNH1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012202</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020069">
        <property type="protein sequence ID" value="MCH91276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032474">
        <property type="entry name" value="Argonaute_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16486">
        <property type="entry name" value="ArgoN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein argonaute N-terminal" evidence="2">
        <location>
            <begin position="74"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="255" mass="29022" checksum="38CE7CD0E729F4D4" modified="2018-12-05" version="1">MQLQMKDPEEHQVKSRPLQKFAEHRRWSXKRXSQIKTDKSQEAGHDDSKLVPXPTSKKSLVFSSRPGYGQLGTKCIIKANHFLVDISVSDLSHYNVKIIPEVSSSKTRKAVISELVRLHRNTDLAKRLPAYDGGRNLYTAGLLPFTYKEFSVILSDDDYVTGGIREREFKVAIKFASSLRMQQLRELLSGKKVDTPQEALTVFDIVLKEVAAQRCIFSIILQLLLLLHNSYELSPYKPLVILIILLVSCHLMFHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV78</accession>
    <name>A0A392MV78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diacylglycerol O-acyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011792</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019224">
        <property type="protein sequence ID" value="MCH90869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16041" checksum="935AEEAAAD91A7C5" modified="2018-12-05" version="1">MAISDVPESTVTTATATVTTVQTDSDLRHSSLRHRPSATSTGGLFDAESAAQDAVRDSGSDDSLNGKNNEEVKDRTTDHAGIDNAVQNNVTDQENVTDVTDFKFTYRPSVPAHRRNKESPLSSGNIFRQVDFSLCLLISVLHGSFRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWR1</accession>
    <name>A0A392MWR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0012889</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021537">
        <property type="protein sequence ID" value="MCH91957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="40"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="14"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="380" mass="43984" checksum="EFDEE26D396792E1" modified="2018-12-05" version="1" fragment="single">MRDKGRVDRDRGGSRRGRSRARSFNRRPHGYIHNVDQSSVSFFVTNFPEDCTSEDLWKEFARFGRVGDVFIPSKVDKWGKRFAFVKFREVKEERILSESMKEVWLGSFKLRINKSRFERKEGGRKDEERGRKDEDTGRAVVREDDGVNFLSGRSFRTALVQNSATQLLKEKDNIDEEVLQVEVDGLLLKELELSFVGKLALDVEVRRIKTTLYMEGLAHISVTAMGRNLVLIYSPKVGEVEALCKAKADWLVYYFKEVRPWSPSSYVNRRDTWVKVFGIPLHVWGENLFKKIGGHYGEFLDFDQPTASRSKLDVARIKLSTDFRGSIDDLLNIKALGVIYSLRIVEEKDVDRDYFQGERFEDHDRSWVASSNFPGEALEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY45</accession>
    <name>A0A392MY45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019901">
        <property type="protein sequence ID" value="MCH91194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="18064" checksum="4DB8CEB511E1F225" modified="2018-12-05" version="1">MDNQRVEKQFDSLADIVATKESWSIKARVLRFWKIPTFLNPRETSSIDMVLLDESTNYPYKLIFQMKTKVQVSKSSSISSYGLTLTNVSEVLSHSVDFEFLLTGISAEREYLRDGKITKMVVIELTDDSGKCECALFGDDVDYLNKLTRKNVVFDDPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N066</accession>
    <name>A0A392N066_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022499">
        <property type="protein sequence ID" value="MCH92348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N066"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF30">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="33377" checksum="C1E7F4DC3A443B82" modified="2018-12-05" version="1" fragment="single">MRTRSRQLRSELRSITKGSRSIADFIARIRTIPESLMSIGDPVAHRDLIEVVLEALPEEFNPIVASVNSQAEIVSLDELESQLLTQEARNEKFKKALVTEQAAVNLTQTPNPDDKFQASQSQIGPYTDQNPNFPNNSNSNPQYQYPGFNNGGRSGANRGCGGRFRGRGGRGNGRSSIQCQICYKNGHDASYCYYRFDGANPYGYGGYGAQNGYGAPPNVWMRNLPRPPQPNFNARPAFPPQFANPRPQTPQAFLTGNESTASSSFQNGWYPDSGATHHVTPDANNLMDFVSLSGSDQVHIGNGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1V0</accession>
    <name>A0A392N1V0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-glucosidase 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014083</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024247">
        <property type="protein sequence ID" value="MCH93135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1V0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018120">
        <property type="entry name" value="Glyco_hydro_1_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353:SF172">
        <property type="entry name" value="GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="GLYCOSYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00131">
        <property type="entry name" value="GLHYDRLASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00572">
        <property type="entry name" value="GLYCOSYL_HYDROL_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="24303" checksum="CC43238C81D072D5" modified="2018-12-05" version="1" fragment="single">MRSLVGSRLPKFNAKQARQLIGSFDFIGLNYYSSTYAFDAPLSSNASRPSYLTDSRVSPAFERNGKPIGIKIASDWLYVYPKGICDLLLYTKEKYNNPSIYITENGINEYEDSTLSVEESLIDTFRIDYHYRHLFYLRYAITEGANVKGYYVWSLFDSFEWSSGYSIRFGMTFVDYKNGLKRYQKLSALWFKNFLRKETKLMFLMRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2T8</accession>
    <name>A0A392N2T8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014836</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025998">
        <property type="protein sequence ID" value="MCH93882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF34">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="181" mass="21115" checksum="38093004396D5596" modified="2018-12-05" version="1" fragment="single">MAESSNFLQPSIPRFDGYYEHWSMLMENLLRSKEYWSLIETGVVAMPANATEEQRKAANDSKLLDLKVKNYLFQSIDRSILETILVRDTAKDIWDAMRRKYQGSTKVKRAQLQSLRREFEILAMGESESVNEYFARTLAIANRMTAHGERMEQVMVVEKILRSMPERFNYVVCSIEESNDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N353</accession>
    <name>A0A392N353_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025243">
        <property type="protein sequence ID" value="MCH93565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N353"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8885" checksum="25FD4C48F4F0C949" modified="2018-12-05" version="1" fragment="single">ERGARKELKMASLGKKLAEWIPNHLPTTISGWLDNLCPLQRISLKMLDPHLITAFVERWHPNTSSFHVMEWNDNYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3H8</accession>
    <name>A0A392N3H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024068">
        <property type="protein sequence ID" value="MCH93054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9776" checksum="6F1952CDB22FCF5C" modified="2018-12-05" version="1">MHINLVSARSLLGSPGELGRNNESMLQDHKRGRRHISTQNLKALGSTPPPSRTTALILLVGEFGGAREKQWTNAPGPQERETPHLHPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3U7</accession>
    <name>A0A392N3U7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014822</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010025968">
        <property type="protein sequence ID" value="MCH93869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002884">
        <property type="entry name" value="ATP-dependent DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF101">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="3">
        <location>
            <begin position="208"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="357" mass="39554" checksum="ECCF76053D8DBB9E" modified="2018-12-05" version="1" fragment="single">MMHKHCFEAVDRTFKDIMRPYDEQNKYIPFGGKXVVLGGDFRQRLPVIPKGTRQEVVHAAINSSRLWDFCEVLTLSKNMRLQTGPSTSNTEETTLFSKWVLGIGDGTIGETNDVNIELQIPSDLLIPSSGNPIAAIVHSTYPNLLANMNNISYFQDRAILAPKNVIVEMINAYMLDLLPGEEKTYLSLDSPHSPNSDVSAIDDVHTPEFLNTINASGLPTHKLRLKLGVPVMLLRNIDQSSGLCNGTRLIITRLGKSVLEGKVISGSNIGDXVFIPRLSLTPSDLRIPFKFQXKQFPLTISFAMTINKSQGQSLKHVGVYLPTSVFSHGQLYVAISRVTSRNGLKILLTNDDEEDTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N565</accession>
    <name>A0A392N565_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rab3 GTPase-activating protein catalytic subunit-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028002">
        <property type="protein sequence ID" value="MCH94723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N565"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="88"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12388" checksum="FBEBDC6B70128DF6" modified="2018-12-05" version="1" fragment="single">VYETVETMLMNPEEALKMVKQTEESTTVTDEPMSRLKRLSLIFSGKDKVLKKTLSKDQLNDEDKSTPRQSFSSFFENKSSLFSKKPPRSGSPSQSPSEKPPIETDWTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N791</accession>
    <name>A0A392N791_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030363">
        <property type="protein sequence ID" value="MCH95656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N791"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="17399" checksum="CE3538C969BA5DE8" modified="2018-12-05" version="1">MEIDEALNFKDTETCPHPSIETNNHITLEENTAEKQPLENSFLITNICEDAPLKLTFDETLADMEKKVVESLSFMRQAIPSCINPVESDAMWKVYKKWFNYYINFVQELSYGIMLKRFSERFIVDMEPIVGTRLVQQLSCLRSFDDNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7I6</accession>
    <name>A0A392N7I6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030086">
        <property type="protein sequence ID" value="MCH95543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7I6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017235234" evidence="1">
        <location>
            <begin position="21"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7789" checksum="544E8F657374DCC5" modified="2018-12-05" version="1" fragment="single">NLINFIWGCGGLALIWNLEGWIMCCCRCCVFVVVVENGSLGGGGCCGGFGWVCGDEDGGWWRKKDRRKDLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N867</accession>
    <name>A0A392N867_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031223">
        <property type="protein sequence ID" value="MCH95987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N867"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="69"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10024" checksum="8C24A0E96B20E8C6" modified="2018-12-05" version="1" fragment="single">SLDLSFKSSAPYTGIHKRYVGEDFAQFLSLGEASIRTRSLFVSARDQKKTNLTSDFDNDSSEASDADVSLQTLSSSSKSSEATTSEADDLRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA41</accession>
    <name>A0A392NA41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017706</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033039">
        <property type="protein sequence ID" value="MCH96717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6514" checksum="6CC936FE746F83A7" modified="2018-12-05" version="1" fragment="single">IELGDSWSIDIGLGLVWNSCPPSPYXHDFPWTYVVPSMEVEIFGESSALNVFGAKRMGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAS6</accession>
    <name>A0A392NAS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017938</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033721">
        <property type="protein sequence ID" value="MCH96946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050872">
        <property type="entry name" value="PPR_P_subfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46128">
        <property type="entry name" value="MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46128:SF321">
        <property type="entry name" value="PENTACOTRIPEPTIDE-REPEAT REGION OF PRORP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="11"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="46"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="116"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="151"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="186"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="221"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="256"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="291"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="38608" checksum="5F7E5144CD4C6A04" modified="2018-12-05" version="1" fragment="single">MWMESNRFDLNIVTYNVLIHGLCKGGRVSEAVEVRNSLREKGLKEDVVTYCTLVLGFCRVQRFEDGICLMNEMIELGFAPTEAAVSGLVDGLRKKGKIDSAYDLVVKLGRFGFLPSLFVYNALINSLCKGGGLDKAELLYGNMRSMNFPPNDITYSILIDSFCKRGRLDVAESYFDRMIKDGIRETVYPYNSLINGQCKFGDLSAAESLYTEMINKGLEPTATTFTTLISGYCKDLQVEKAFKLYNEMNVKEIAPTVYTFTALIYGLCNTNEMAEASKLFDEMVERKIMPTEVTYNVMIEGYCRAHNIDNAFELLEDMLQKGIVPDTYTYRPLISGLCSTGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB56</accession>
    <name>A0A392NB56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADPH-cytochrome P450 reductase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017272</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031981">
        <property type="protein sequence ID" value="MCH96288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003958">
        <property type="term" value="F:NADPH-hemoprotein reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001094">
        <property type="entry name" value="Flavdoxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19384:SF111">
        <property type="entry name" value="NADPH--CYTOCHROME P450 REDUCTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19384">
        <property type="entry name" value="NITRIC OXIDE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00369">
        <property type="entry name" value="FLAVODOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="Flavoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12660" checksum="DF9002B0273A2B12" modified="2018-12-05" version="1" fragment="single">DDYAVDDDQYEEKLKKETLAFFMLATYGDGEPTDNAARFYKWFTEGKDERGTWLQQLTYGVFGLGNRQYEHFNKIGKVVDDDLSEQGAKRLVPLGLGDDDQSIEDDFSAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND08</accession>
    <name>A0A392ND08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polypyrimidine tract-binding-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018406</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034897">
        <property type="protein sequence ID" value="MCH97411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="27"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13201" checksum="B06259449DB035D6" modified="2018-12-05" version="1">MPSWDPNQQEVTQSYLSAPSSYPSGQAVPGYSPAAVPPAGASPHAHMPPSSFSGASPPAAAAYQAPPPSTACISTTLTTLPLKDSNGEDNISKGNNKKEWAKTSFSTSLSARALSLLPLQVIVFNFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDN1</accession>
    <name>A0A392NDN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxyproline-rich glycoprotein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034442">
        <property type="protein sequence ID" value="MCH97245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040420">
        <property type="entry name" value="At1g76660-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31798:SF2">
        <property type="entry name" value="HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31798">
        <property type="entry name" value="HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="17902" checksum="FA2466D83EE6FE27" modified="2018-12-05" version="1" fragment="single">KKKWGNWLNITGCFGYQKNNRKRIGHAVLVPETTPTGTDAAANAVSSTAQAPPSITLPFIAPPSSPASFFQSEPPSTAQSPVGLVSKTSVCASMYSPGGPNSIFAIGPYAHETQLVSPPVFSASSTAPFTPPPESVHLTTPSSPEVPFAQLFDSNNRNSETFQRFQISH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG79</accession>
    <name>A0A392NG79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036840">
        <property type="protein sequence ID" value="MCH98145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010751480">
        <property type="protein sequence ID" value="MCI69215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2278" checksum="38B291A9F580B709" modified="2018-12-05" version="1" fragment="single">MAAKLMQAVEYSSYGGDASGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHX3</accession>
    <name>A0A392NHX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nodulin MtN21/EamA-like transporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0020404</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040166">
        <property type="protein sequence ID" value="MCH99392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030184">
        <property type="entry name" value="WAT1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31218">
        <property type="entry name" value="WAT1-RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH99392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="11940" checksum="EE64EA576881D26F" modified="2018-12-05" version="1" fragment="single">VISEPNASAWKIGLDTSLASILCSGAVYVAMFKPLSIVIAVAMGVVFLGDTLHLGSLIGATIISIGFYTVMWGKATEEVVEDVPIHETTTTQNAPLLQSYKTEVENKMHTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJ73</accession>
    <name>A0A392NJ73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Abscisic acid 8'-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0020311</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039930">
        <property type="protein sequence ID" value="MCH99299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJ73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010295">
        <property type="term" value="F:(+)-abscisic acid 8'-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009687">
        <property type="term" value="P:abscisic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016125">
        <property type="term" value="P:sterol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24286:SF10">
        <property type="entry name" value="ABSCISIC ACID 8'-HYDROXYLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24286">
        <property type="entry name" value="CYTOCHROME P450 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH99299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17281" checksum="15F0C81C3356BCF8" modified="2018-12-05" version="1" fragment="single">MPINLPGTLFHKAMKARNELAQILAQIISSRREKKQEYKDLLGSFMDEKSGLTDEQIADNVIGVIFAARDTTASVLTWTVKYLGENINVLEAVIEEQESILKSKEENGEEKGLKWEDTKKMVITSRVIQETLRVASILSFTFREAVEDVEYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJC9</accession>
    <name>A0A392NJC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NEDD8 ultimate buster-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0020945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041763">
        <property type="protein sequence ID" value="MCH99930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000058">
        <property type="term" value="P:regulation of ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039749">
        <property type="entry name" value="NUB1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12948:SF3">
        <property type="entry name" value="NEDD8 ULTIMATE BUSTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12948">
        <property type="entry name" value="NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00165">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBA" evidence="2">
        <location>
            <begin position="38"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH99930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13609" checksum="7E683ED9B0F8129E" modified="2018-12-05" version="1" fragment="single">HRHLRLELLEGVVAFHTGQLEKSRQALASARAKFVQLQVPDEALSLVMSMGYNQRNAKRALRMNNQDVGGAIDFLVEEKAKKLQKREEDLKRRDEIWECAEDASPLPAPPPNLFSVPDPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQE7</accession>
    <name>A0A392NQE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phagocyte signaling-impaired protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022465</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046147">
        <property type="protein sequence ID" value="MCI01440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="26760" checksum="1F504A0FE8991728" modified="2018-12-05" version="1" fragment="single">ISDSNLIDWLNFIVFLNAWNLSSHELVHPDRNERRPIIWNILDSLLEKYISEKVRSMEPQLCSPWSDIQLLMQLVTEPLAWHGLVIQSCLRSCLPSSKKKKKSGSSYQSSSNMAHAITDSVQQLSLVLEDVMKWISEWNKRPEDENSEGILSLLRKDGHTEGPGRVFHILETFISSMSNADVGDRIYHSLKSWSPADVARKMMTGKLKVLMEFSTICESKLKLLQSLKQQIAHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRQ0</accession>
    <name>A0A392NRQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022774</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046975">
        <property type="protein sequence ID" value="MCI01746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7255" checksum="9D53D5178F7AC45A" modified="2018-12-05" version="1">MEGETVIWSSSWIELSRMSRVTDKLKWTRLRVARSTWTTCCADVDEDGSSYWVVRAGVDLSQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT22</accession>
    <name>A0A392NT22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MACPF domain-containing protein CAD1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048694">
        <property type="protein sequence ID" value="MCI02299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009626">
        <property type="term" value="P:plant-type hypersensitive response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000031">
        <property type="term" value="P:regulation of salicylic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044663">
        <property type="entry name" value="CAD1/NSL1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199">
        <property type="entry name" value="MACPF DOMAIN-CONTAINING PROTEIN CAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199:SF3">
        <property type="entry name" value="MACPF DOMAIN-CONTAINING PROTEIN CAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10581" checksum="1041592D721B0D89" modified="2018-12-05" version="1" fragment="single">SDSLSATLFNSIQALGRGFDVTSDIRLLYCKGAPGSRLVHLDEQHTRDLVLSQQLVVPDVSLDIDFSNGTSGILKTPVCSFQEVWLVTFNLLHCIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYK6</accession>
    <name>A0A392NYK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054877">
        <property type="protein sequence ID" value="MCI04289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9750" checksum="47DD8A72DC55D53C" modified="2018-12-05" version="1" fragment="single">IRDFPLQEFSAFAAAKSDRKRQKSGRKGVLRRPFXQTVAAVFLDEKLPEISGGSFAEVFFRWKIQCSGCWVLNLRRLGAAGNNNDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYX7</accession>
    <name>A0A392NYX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-coumarate-CoA ligase-like 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025719</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056138">
        <property type="protein sequence ID" value="MCI04672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016405">
        <property type="term" value="F:CoA-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096:SF412">
        <property type="entry name" value="4-COUMARATE:COA LIGASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8476" checksum="EEABBE4DD3BD0237" modified="2018-12-05" version="1" fragment="single">MVKLPFFTSYATRLTIDDKGWVHTGDLGYFDEDGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZZ7</accession>
    <name>A0A392NZZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0026083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057337">
        <property type="protein sequence ID" value="MCI05034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZZ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6667" checksum="3E8E45945292C584" modified="2018-12-05" version="1">MHESVPAHCRVLDLTKKGRLIKLCGGSWLFMEAQVDVRLAPLERQARGEHTSGNNYDSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P142</accession>
    <name>A0A392P142_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">NifU-like protein 3 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0026290</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Homodimer; disulfide-linked.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast stroma</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NifU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058030">
        <property type="protein sequence ID" value="MCI05240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P142"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.130:FF:000003">
        <property type="entry name" value="NifU-like protein 3, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.130:FF:000006">
        <property type="entry name" value="NifU-like protein 3, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="entry name" value="Fe-S cluster assembly (FSCA)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001075">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11178">
        <property type="entry name" value="IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11178:SF25">
        <property type="entry name" value="NIFU-LIKE PROTEIN 3, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01106">
        <property type="entry name" value="NifU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="Fe-S cluster assembly (FSCA) domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0934">Plastid</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="NIF system FeS cluster assembly NifU C-terminal" evidence="8">
        <location>
            <begin position="39"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="NIF system FeS cluster assembly NifU C-terminal" evidence="8">
        <location>
            <begin position="120"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI05240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20100" checksum="701A83B4E6260CE3" modified="2018-12-05" version="1" fragment="single">TPHDAADTCRYIQSLSFSQTIICFVVSPRCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESILSEIRPYLIGTGGGTLELVEINDYIVQVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGC4</accession>
    <name>A0A392PGC4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amine oxidase</fullName>
            <ecNumber evidence="1">1.4.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031459</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="1">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Topaquinone (TPQ) is generated by copper-dependent autoxidation of a specific tyrosyl residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the copper/topaquinone oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.-" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010075950">
        <property type="protein sequence ID" value="MCI10366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008131">
        <property type="term" value="F:primary methylamine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009308">
        <property type="term" value="P:amine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.20">
        <property type="entry name" value="Copper amine oxidase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049947">
        <property type="entry name" value="Cu_Am_Ox_Cu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000269">
        <property type="entry name" value="Cu_amine_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015798">
        <property type="entry name" value="Cu_amine_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036460">
        <property type="entry name" value="Cu_amine_oxidase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638:SF87">
        <property type="entry name" value="AMINE OXIDASE [COPPER-CONTAINING] ALPHA 2, PEROXISOMAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638">
        <property type="entry name" value="COPPER AMINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01179">
        <property type="entry name" value="Cu_amine_oxid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49998">
        <property type="entry name" value="Amine oxidase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01165">
        <property type="entry name" value="COPPER_AMINE_OXID_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0801">TPQ</keyword>
    <feature type="domain" description="Copper amine oxidase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7853" checksum="017208CDC1584BD9" modified="2018-12-05" version="1" fragment="single">DREIENKDIVLWHTMGFHHVPSQEDFPVMPTLSGGFELRPTNFFERNPVLKTKSPKPIHWPNCTSQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PH09</accession>
    <name>A0A392PH09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Putative inactive receptor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0031874</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
            <location evidence="2">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the polygalacturonase-inhibiting protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077574">
        <property type="protein sequence ID" value="MCI10779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000400">
        <property type="entry name" value="Nuclear pore complex protein NUP107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053059">
        <property type="entry name" value="Inactive_SerThr-Kinase_ABA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025875">
        <property type="entry name" value="Leu-rich_rpt_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48003">
        <property type="entry name" value="OS07G0626500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48003:SF5">
        <property type="entry name" value="OS07G0626500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12799">
        <property type="entry name" value="LRR_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0611">Plant defense</keyword>
    <keyword evidence="13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="12">
        <location>
            <begin position="28"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00038043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI10779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22074" checksum="49DA600572636016" modified="2018-12-05" version="1" fragment="single">MTPPXXXXXXXXXXXXXXXXXXXXXSSPELRSLLEFKKGITSDPDERVLNSWSPSTLNDANECPTSWQGIFCDELTGNITGIVLDHFNLTGELKFQTLLDLKMLKNLSLAGNQFTGRLPPSLGTITSLQHLDLSNNNFIGPIPARINDLWGLNYLNLSHNDFKGGFPTGLNNLQQLRVLDLHSNKLWADIGDLISTLHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URA7</accession>
    <name>A0A392URA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099776</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952139">
        <property type="protein sequence ID" value="MCI78506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6417" checksum="77E9310BA2104B35" modified="2018-12-05" version="1" fragment="single">MSCRINSIIDVLQSAVSSIVTTSLGASVLGVGIISRMTVLLLPAFLVLASFDSRSALAFCSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV74</accession>
    <name>A0A392UV74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955434">
        <property type="protein sequence ID" value="MCI78635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7974" checksum="DFB1E854BD3428EC" modified="2018-12-05" version="1" fragment="single">VEELPVVCEFPDVFPGDVSDVPPEREVEFTIDLVPETGPISMAPYRMSASELKELKKQLEDLLEKKFIRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWK5</accession>
    <name>A0A392LWK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ypt/Rab-GAP domain of gyp1p superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000087</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000050">
        <property type="protein sequence ID" value="MCH79339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.80:FF:000034">
        <property type="entry name" value="TBC1 domain family member 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.80">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000195">
        <property type="entry name" value="Rab-GAP-TBC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035969">
        <property type="entry name" value="Rab-GAP_TBC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22957:SF337">
        <property type="entry name" value="TBC1 DOMAIN FAMILY MEMBER 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22957">
        <property type="entry name" value="TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00566">
        <property type="entry name" value="RabGAP-TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00164">
        <property type="entry name" value="TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47923">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50086">
        <property type="entry name" value="TBC_RABGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rab-GAP TBC" evidence="3">
        <location>
            <begin position="43"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="482"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="602"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="662"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="482"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="502"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="558"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="602"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH79339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="775" mass="86125" checksum="6AF0FD4F1F53C3A5" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX20</accession>
    <name>A0A392LX20_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000252</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000150">
        <property type="protein sequence ID" value="MCH79502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="107"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="490" mass="56424" checksum="03C7AFE26FD3901D" modified="2018-12-05" version="1">MKNPFKPSKKGKGDDASSSSRPARKRRGAQLPTSTPSPTPSPTPSPPPSPSHEPIQPELPLDIPRDRFSREESVARYQLIWHKVFNKEKALSADVINLPYIKAEFVRRRWERFNNSIGTGNRTMTMEFLSNAWRKSNEANPCCVRVRGREVYYSAPEINRVCNFYEPPVCTLKAKRDASKSLSVEQREALKSQLSVPRTEWLRPVKSGLNKRFKTKKLLDIPRILAEFWIHSVEPCGNRSEVSLEVSLALQSILLGQDINLGMILCESLLKMVKNDTRNFTISHLSLITALCRDAHCPNMDGDIFDEPLRAVSLEDVDGYIQKAGGLQFVPFADENDFLDYDHVDVGRRQHLEEELQQELNRDIPNAPEMEHFPAPTFDQNMLSEMLLRMDLSTQAGIDMADYYETSSPLWQAMLARREQVPAYFYPRYPTMGDFDSAHVRRIQTMNDVHEVNRATYIRQRRAXSEEYYHMQFPGNMPHFDNDHIQPEQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXH1</accession>
    <name>A0A392LXH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000256">
        <property type="protein sequence ID" value="MCH79653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="19049" checksum="ECDB636F5902EC85" modified="2018-12-05" version="1" fragment="single">EEGKNKWVEELWSVLWAYRTTSHSTTGKTPFRLTYGTEAVIPVEIEELTWRTTQPLPEEANNEALQEELDLVEELRTAASLREASLKQKIAARHDLKIIKREFDVGSLVLRRNAKDSNHGKLAANWEGPYRVRAKTENGAYHLETLTGQQLPRTWNAQKLKQYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXM6</accession>
    <name>A0A392LXM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000297">
        <property type="protein sequence ID" value="MCH79703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="21643" checksum="417A54CC6D3F7FBD" modified="2018-12-05" version="1">MHNTFGHHTNTCVRFRDTIQKAIEEGRLIFEEKPKMKVDENPFHVAANFAEPEYDVNMVNAAIHQEALVVEAVFPEEETVDHVIEKFKDETSNKIYPDDEETLSEFLHKKCSFNQKVMLCPRCSSVFDKATAKAFERSNIKKEFDTSEAKKEVANEDKTWRNQHDKKGTRFFDRKKKRSTQKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYM2</accession>
    <name>A0A392LYM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000825</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000641">
        <property type="protein sequence ID" value="MCH80063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="173"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="17"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="121"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="764"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="84"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="818"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="818" mass="90745" checksum="BF11115F85B9089B" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0P8</accession>
    <name>A0A392M0P8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001620">
        <property type="protein sequence ID" value="MCH80892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0P8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="238" mass="27100" checksum="7CAE6A595BFB7743" modified="2018-12-05" version="1">MCWVKWEEVTKPRSEGGLGVRDLRRVNASLLAKWRWRLLSNEGWFSKALRKKVGNGRTTSFWKDVWIGTQALKDRFPRLFSISVSKDLLVAEVGGTEGNRWCWSPLWRRNLFEWEVDMSRDLHQVLQQAFMSEVEDRWIWSEEDDGIFLVKSCYNLLSRLHTPQTGMSTLHQFVFQNIWKSSGTVVLFGTVSPGGTFALSHCGFCPCVFDELSLCFAASPLLGCGGGELGLAALFLCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0T1</accession>
    <name>A0A392M0T1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Neprosin PEP catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001657</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001602">
        <property type="protein sequence ID" value="MCH80881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0T1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053168">
        <property type="entry name" value="Glutamic_endopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004314">
        <property type="entry name" value="Neprosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025521">
        <property type="entry name" value="Neprosin_propep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31589:SF223">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF239)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31589">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03080">
        <property type="entry name" value="Neprosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14365">
        <property type="entry name" value="Neprosin_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52045">
        <property type="entry name" value="NEPROSIN_PEP_CD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017374782" description="Neprosin PEP catalytic domain-containing protein" evidence="1">
        <location>
            <begin position="19"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Neprosin PEP catalytic" evidence="2">
        <location>
            <begin position="51"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS52045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="24963" checksum="DA805A048BDF5056" modified="2018-12-05" version="1" fragment="single">MVNTLMFFILCLVTSSIGHTVNKSPIKSIQTELGSIIDCVDINKQPAFDHPLLKNHTLQTKPSFEVDSPTNSIYALENVSCPEGTVPIPRTTKDDLNRDKSLFNKYNLTQNSIRRFDAKVFLIPKGGPYYGVSGTTSVYHPKVFLGQDSSSHLYVENGANAIVVGWHDPVSHNWWLSVANVVIGYFPGRLFSNLGQATEVGWGGSTVSPSAIGPPMGSGHFPDGNYAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4L5</accession>
    <name>A0A392M4L5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carbon catabolite repressor protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003553">
        <property type="protein sequence ID" value="MCH82347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4L5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-RNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050410">
        <property type="entry name" value="CCR4/nocturin_mRNA_transcr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12121">
        <property type="entry name" value="CARBON CATABOLITE REPRESSOR PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12121:SF82">
        <property type="entry name" value="CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="15944" checksum="0CA33BB36C4AA40E" modified="2018-12-05" version="1" fragment="single">RRTGDTSDGCAMFWKADKFQVLDEESIQYKDIGLRDNVAQLLVFEGISYKVSIPVGVYLLECMNAYGMRGSDSRRLVVGNIHVLYNPNRGEVKLGQIRFLSSKAQTLSEKWGNAPVILAGDFNSTPESGIYKFLSSSEVNELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4X1</accession>
    <name>A0A392M4X1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0003164</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the disease resistance NB-LRR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003576">
        <property type="protein sequence ID" value="MCH82361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4X1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001091">
        <property type="entry name" value="Probable disease resistance protein At1g61300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF105">
        <property type="entry name" value="AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0611">Plant defense</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="7">
        <location>
            <begin position="92"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH82361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="640" mass="73093" checksum="2FFD1B391A0913F8" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5D4</accession>
    <name>A0A392M5D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003801">
        <property type="protein sequence ID" value="MCH82521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18243" checksum="F9B933716DEBCC9F" modified="2018-12-05" version="1" fragment="single">MPPLSFTDHIIPLLLNSTPVNVRPYPYPHAQKLEIESQVSKRFRMVGFNIAHHVLLPDLVAITILQPVSSITIIWPMLYPFWKPANWPISHLLLRDFLCQPIYRKFVCNYASIAHRLTELLTDHQSLKEILSQKSEFFQVLELQADGRRASLWAGGCAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M776</accession>
    <name>A0A392M776_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Intracellular protein transport protein USO1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0004146</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004998">
        <property type="protein sequence ID" value="MCH83327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M776"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011684">
        <property type="entry name" value="NAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056888">
        <property type="entry name" value="NET2A-D/KIP1-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31631:SF3">
        <property type="entry name" value="PROTEIN NETWORKED 2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31631">
        <property type="entry name" value="PROTEIN NETWORKED 2D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07765">
        <property type="entry name" value="KIP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25014">
        <property type="entry name" value="NET2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51774">
        <property type="entry name" value="NAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAB" evidence="4">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="48"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="124"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="262"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="332"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="53"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="63"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="556" mass="63788" checksum="F9292E2F145BAE76" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7F5</accession>
    <name>A0A392M7F5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004571">
        <property type="protein sequence ID" value="MCH83045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7F5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="20"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7631" checksum="87335348C879DDCB" modified="2018-12-05" version="1" fragment="single">ALVIKEVIWCPPLSNWIKGNTDGVSTNISSSCGGIFRNCQADFVGCFAKNLGTGTTFQAELAGVMRAIEIAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8F9</accession>
    <name>A0A392M8F9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein SKIP8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003738">
        <property type="protein sequence ID" value="MCH82474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044260">
        <property type="entry name" value="SKIP8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47124">
        <property type="entry name" value="F-BOX PROTEIN SKIP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47124:SF1">
        <property type="entry name" value="F-BOX PROTEIN SKIP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13474">
        <property type="entry name" value="SnoaL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="28"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16631" checksum="10375605BED2F2FD" modified="2018-12-05" version="1" fragment="single">DFTLEQDSVTPSNGWKAYYAATRAIVIVNTEFFNIVRDKSIQAMRLFWLNADYVKCIHATGELFSGYNSVMQSWQLIFNWEQGLNFQVRDVRARVLTDMAWVTMKTSVDIDAGPFHVTNVFEFHSGRWYMVHHHISVMTGDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M995</accession>
    <name>A0A392M995_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004836</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006098">
        <property type="protein sequence ID" value="MCH84006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M995"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9618" checksum="799F93C285EDE2D3" modified="2018-12-05" version="1">MPFILMGGGGFVLKEKLKMIKVALKEWHVSHSRYILGKIDSLKARLAVLDDKGEDEVLTDDEVAELHGITSDIHSPSRVNTSICWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA16</accession>
    <name>A0A392MA16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide transporter PTR2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005162</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006651">
        <property type="protein sequence ID" value="MCH84330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH84330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="26261" checksum="819EB970CDFB6B0D" modified="2018-12-05" version="1">MENFEEPTRLLLEDSLLQSEQSLHTGDGSVNIKGELVVKSETGTWKACPFILGTFFCERLAYYGIATNLVTYLTTKLHQGLVSAAKNVTTFQGTCYLTPLVGSFFADAYLGRYWTIAVFYGIYLIGICILILSATISALEPTECVNSVCPSATLAQNVVFFLGLFLIALGTGGIKPCIWPFGADQFDDTDHRERASKGSFFNWNYFTSNIGALLSVTILAHQSIDFKGQGVVLLQEFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB70</accession>
    <name>A0A392MB70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006163">
        <property type="protein sequence ID" value="MCH84038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="394" mass="44971" checksum="821E5E0EAB091984" modified="2018-12-05" version="1" fragment="single">MEEVTSSLCRSLWGNNDCDWVSIPAVGNSGGILSLWRKSLGSIVFSFTGDGFVGVCLDLADKQIRCCVINVYAKCNLADKRRLWSDLLMTKRGFGDIVWCVVGDFNSVVDITERRGVASGAIHSPSREMRXFGQFLEELELVDLPLIGRSFTWFHPNGTTMSRLDRVLVSLDWIPLWGNPNAWVAPRDVSDHCPIILRYDSTDWGPKPFRFNNFWLKNNKFKALVTSTWEAQNFTGWMGYILKDRLKGLKGVIKSWSGEVYGKPVERKNSLVEKIKTLDLKSEQMGISGEEVETRRRLFDELWVVLKSIDASIFQRSRARWLKEGDANTKYFHSQVKMRGRINNIPALLTENGWVEGPADVRQATMSFFQQHFQSAEWDRPTLDGVEFPVLSDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBA8</accession>
    <name>A0A392MBA8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005618</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007368">
        <property type="protein sequence ID" value="MCH84782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF79">
        <property type="entry name" value="OS06G0205337 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="53"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="193"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="118"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="197"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="209"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="444" mass="51484" checksum="9B0EE9A0739F7AFD" modified="2018-12-05" version="1" fragment="single">MSLKTGKNIGDYIGXIRVMVDVRLPLKRSKKIKRPGGESKIVKFKYERLGTFCYICGLLGHSDNKCPKLFDMTDTTNVDRNWGPELRVDVGRRQGGESRWIRQGGDPNWTAPNPVLMSNKGSSSNSGINGSKEIMSIKANNDERTKAPALSDIFRKPETLFPTMTEKKVNADYNEEKMEEDVTEVLILEGDRKRSRCQSNNNTSSEGQHVQEGKQENNKVKSDTWSRWRFTGFYGCPEQDRRKESWDILRFLAQDTSLPWCVMGDFNDMLSEDDKRGGTPQPHWLIRGFREAVQDSGLVDLPMDDYPYTWTKGRRAVNPTEERLDRAMANQSWIDEFPNFKFMNAIADRSDYSPILLRLTNTNKEFKPRVFMFENAWLEEQELDNIVKRAWNREGFAPLLSKLRYCTEDLDDWGSRLRSRFKKSIAEYRQEMEQNQDTSSELSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBP8</accession>
    <name>A0A392MBP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Filament-like plant protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005770</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FPP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007623">
        <property type="protein sequence ID" value="MCH84932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008587">
        <property type="entry name" value="FPP_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31580:SF4">
        <property type="entry name" value="FILAMENT-LIKE PLANT PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05911">
        <property type="entry name" value="FPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="24"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="136"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="347"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="518" mass="58148" checksum="9B4E22613D92D69D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX5</accession>
    <name>A0A392MCX5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0005450</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007110">
        <property type="protein sequence ID" value="MCH84618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="11">
        <location>
            <begin position="168"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="488"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH84618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="488" mass="56231" checksum="43ECE9F04A241651" modified="2018-12-05" version="1" fragment="single">MTQFIQTPEQQFYLAKLLGYSYNIVYKPGAQNRVADALSRIHCLALSIPHMEFISKLKEQLIKDQEFQQFLTKVQDQPNDYKNFQVLNDLVFFKGKLFLPSGSPLKQTLLEEFHASLIGGHSGIHRTFGRLQENVFWFGMRKDVEDFVKACVVCQQTKSATHAPYGLLQPLPIPEKVWEDISMDFIVGLPSFQTHTVILVVVDRLSKAAHFGMLSTHYTAARVAELFAIMVCKLHGMPRSIVSDRDPVFLSHFWQELFRLSGTKLRMSTAYHPQSDGQTEIVNKILQQYLRCFVHNKPKQWGLYLHWAEWHYNSATHTTTGLSPFQVVYGRPPPALTNYVPGSTQLQAVEATLLDRDTMLQELKNKLLKAQVVMKEIADQSRIPHKFVVGEVAFELELPPTSKIHPMFHVSQLKPCFGDVNPIMDLPAEAVDNQPLIQPLSMMDWKWHDESQEWQVLIQWEGLFPEDSTWESYQDIVMTYPNFHLEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDT8</accession>
    <name>A0A392MDT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005776</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007639">
        <property type="protein sequence ID" value="MCH84938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="207"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="448" mass="48466" checksum="A95144AAAACCB6A9" modified="2018-12-05" version="1" fragment="single">MNELFRKELEGSMVGTLAREKDVRRIQTTLFMEGYKSISVTHMGGNMALIRSPVADDVQKLMRSKNECLAYYFSEIKPWVPGLVAVQRETWIQVVGIPLHIWGEDFFKLVGAKLGVFLDFDEETASMRRLDVARVKILTDIWAVIDVAIKVEVEGVCFNVWVVEEKGRERTGVAFDEGVEDDESRVVPSEVSGEVEVGYCGDAANSGDDDVPGSDGDGDPSVQQQHEGLHEGDCDLPMREEETIERNDFLNCDKSTLIPDSNKETNPFDDAYVCSVAVVTGQVEKVTVLVDPLRVEEADKFLEGGPGHSCEKAMVNVPFDPVSKEVGLLGCESDPVIVASDVVGQIAPTRPVCDPIDEDVVSRFSSISEPEEVLEAAKGGGHKARRRCAKAKDTATVDAAVGGAGLSQHRTSNATAELAKSKGRSVANQGLPVPVVTPSSGLNLISGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDV6</accession>
    <name>A0A392MDV6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0006505</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008902">
        <property type="protein sequence ID" value="MCH85656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="16">
        <location>
            <begin position="208"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="386"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH85656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="596" mass="68859" checksum="14A316BF5FC3DC9E" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME34</accession>
    <name>A0A392ME34_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0006221</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010008395">
        <property type="protein sequence ID" value="MCH85375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050236">
        <property type="entry name" value="Ser_Thr_kinase_AGC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24356:SF395">
        <property type="entry name" value="SERINE_THREONINE PROTEIN KINASE IRE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="289"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH85375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="318" mass="35857" checksum="C7C62E9F38BDCCD4" modified="2018-12-05" version="1" fragment="single">MICRICEVEIPIISVEEHSRICTIADKCDLKGLTVNERLERVSETIEXXXXXXXXXXXXKSTDTHGESFEVARVSTSSLHEEFNELSLERNNLSHRCSEDMLYPAHEPDNSFVGDDLNLSPEISCDTHICFKPDHSANVSSPGSLTPRSPLVTPRTSQIEILLSGRRPISELESYDQINKLVEIARAVANVNNCDYSALEYLLDRVEDLKYVIQDRKEDALIVETFGRRIEKLLLEKYATLCGQIEDERVDSSNSMADEESSVEEDTVRSLRCSPMNACSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEW1</accession>
    <name>A0A392MEW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative leucine-rich repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006911</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009658">
        <property type="protein sequence ID" value="MCH86057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43049:SF1">
        <property type="entry name" value="EARLY ENDOSOME ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="109"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="393" mass="44130" checksum="47C09AB9F7FC1A9C" modified="2018-12-05" version="1" fragment="single">GEQSISLKSEFEETLSKVTALQTENEDLKRQIIEAENKTSQSFSENELLVGTNIQLKTKIDELQESLNSALSEKDVTAQELVSHKNLLAELNDVQSKSAEIQSANEARILEVESQLQEALQKHNEKETETKELNEKLSTLEGQINEEKLKLVQEIAVYESKLSDLQSKLSAALVEKEETVKEILTSKNAAEDLVTMHSEELQTLKSQISSVIDEKNLLNETNQNLKKQLESMILDLEEKLKDHQKNEDSLKSEVETLKTEIAEKSALQSRLQEIEAQLAKAESRLHEEVGSVQAAASQREIDLSSKFEDYEQKVNEINVLNGKVVELEKELQLAQATIANQKGAESQKVELEAALKNSLXXXXXXXXXXSLLQKQVIDFEQKLQQGGEKISVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFD0</accession>
    <name>A0A392MFD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007071</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009942">
        <property type="protein sequence ID" value="MCH86217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7512" checksum="BAC39104DC6120B9" modified="2018-12-05" version="1">MILAVYGCLSGMKCEYLDNLSTTTKIASYPLHLDFGRPVMKSMDTSSHTLSGIGSGCSNPPGDDAKYFCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFE3</accession>
    <name>A0A392MFE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009339">
        <property type="protein sequence ID" value="MCH85893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF34">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="17014" checksum="30CE6F66EEAE84B4" modified="2018-12-05" version="1">MADDKQFVQPAIPRFDGYYHHWAMLMENLIRSKEYWNLVEIRIPSLPTAPMPEQTKTVEDARLKDLKLKNYPFQAIDRSIIETILKKDSTKDIWESLKMKYSGSTKVKPAQLQALRREFEILGMKESESVEEYFSRTLTILQTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFF3</accession>
    <name>A0A392MFF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Non-lysosomal glucosylceramidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009972">
        <property type="protein sequence ID" value="MCH86230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024462">
        <property type="entry name" value="GH116_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052566">
        <property type="entry name" value="Non-lysos_glucosylceramidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12654">
        <property type="entry name" value="BILE ACID BETA-GLUCOSIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12654:SF0">
        <property type="entry name" value="NON-LYSOSOMAL GLUCOSYLCERAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12215">
        <property type="entry name" value="Glyco_hydr_116N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycosyl-hydrolase family 116 N-terminal" evidence="1">
        <location>
            <begin position="2"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4909" checksum="37328ECDB44B5DBF" modified="2018-12-05" version="1" fragment="single">MPSSPGETLCAAVSASAWVEPHGKCTVAFSLAWSSPKVKFVKGSSFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFF5</accession>
    <name>A0A392MFF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">IAA-amino acid hydrolase ILR1-like 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007739">
        <property type="protein sequence ID" value="MCH84994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010179">
        <property type="term" value="F:IAA-Ala conjugate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009850">
        <property type="term" value="P:auxin metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014:SF148">
        <property type="entry name" value="AUXIN CONJUGATE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PEPTIDASE M20 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15272" checksum="8BFFF6EAC2C604C4" modified="2018-12-05" version="1">MQVIIGQAAVQRCNATVDFLEEWEPFNPPTVNNGELHEHFVNVAVNMLGIDKVNSVLAPSMGAEDFSFYQEIIPGYFYFIGVKNASDKRAESFHSPYLKIHEDGLPYGAALHASLAASYLLKHEQDVPGVGGKYNDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGF9</accession>
    <name>A0A392MGF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006983</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009777">
        <property type="protein sequence ID" value="MCH86129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="473" mass="54447" checksum="A7D21CCD7E11C3B2" modified="2018-12-05" version="1" fragment="single">VELNLVINGQYVPRKGYYDFRVERNHVLVCDLRLLFNDKEWLSLNALFLEHEWNQVQVPYEASLGVTLSEWGVYVYKQGTTNLEERVQFICPDPTRYSNIANIIVPSKNPLKMMMEKLAFDEMFNEILADIMDIFFVDKLAENMNMENQIADKLQTNFTRSYNDKDKDEPPSLNYKDELHQRTNFLGESEFGFWVEQYLIRSYLLPGRIPDYQDPLPLEIRGLTPKETPRKDEIMKPPTDAYVGETSTSGHKKSLKAQAQEILMKIFLFGMSAGKWVILSLLRSVVQMKIYVEGIFNELREAHLSFPTLGSSKPTINGYWPTLTTMFWGPDCGPATRRWRGAPYLSSLRGGKGKPTISSSYRMRCRSSWSTSHTCYYTCQSPMNLHLSQETRRVSICLISSGARFQRNLWSGTLPKVYMYGSTGCMRSTRYNLCVERPAGIVQQEHFSGILRTRASPMSISANSPNYSIRFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGN3</accession>
    <name>A0A392MGN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pumilio 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008448">
        <property type="protein sequence ID" value="MCH85404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012940">
        <property type="entry name" value="NABP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07990">
        <property type="entry name" value="NABP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleic acid binding NABP" evidence="2">
        <location>
            <begin position="74"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="169"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="446" mass="46794" checksum="A21FA4D6BB935090" modified="2018-12-05" version="1" fragment="single">MERNTPVTGLPSRPASRNAFDENVDIISTSEAELSHGSSATQNIGLPTSYSYAAALGGSSLSRSTTPDPQHVARAPSPCLTPIGGGRSAASDKRGIVSPDAYNGVSSGKNESADLLNALSGMNLSADDENHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLKRSESGHLQSSVKNSRSGSDLNNLSLHRQVELQNSTAPANNSYFKGSPTSHFSGGNLPAQQYQSIDGMNSSFTNYGLGGYAGNPALTSLMTNQYGTSNLPPLFENVAAASAMASPGMDSRILGAGLASGGGSPDVHSLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPLGGKSANSNHHAYYGNQAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH03</accession>
    <name>A0A392MH03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010923">
        <property type="protein sequence ID" value="MCH86772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10788" checksum="0CFDCE07113173F7" modified="2018-12-05" version="1">MPLATLLMKNTDELPGASLFCFLNQLSLMLSLSAAAAAICIDIRGSRPHSLQYSSIKVTIVHPDALFLHEERNSRLDYQHMKSWHLVQQEKHLMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHH3</accession>
    <name>A0A392MHH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA topoisomerase 6 subunit A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007403</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010496">
        <property type="protein sequence ID" value="MCH86545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000228">
        <property type="term" value="C:nuclear chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042138">
        <property type="term" value="P:meiotic DNA double-strand break formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000706">
        <property type="term" value="P:meiotic DNA double-strand break processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007131">
        <property type="term" value="P:reciprocal meiotic recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002815">
        <property type="entry name" value="Spo11/TopoVI_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036078">
        <property type="entry name" value="Spo11/TopoVI_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034136">
        <property type="entry name" value="TOPRIM_Topo6A/Spo11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848:SF4">
        <property type="entry name" value="DNA TOPOISOMERASE 6 SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN SPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21180">
        <property type="entry name" value="TOP6A-Spo11_Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56726">
        <property type="entry name" value="DNA topoisomerase IV, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Topoisomerase 6 subunit A/Spo11 TOPRIM" evidence="2">
        <location>
            <begin position="185"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="135"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="347" mass="38823" checksum="99EB52D028A99A85" modified="2018-12-05" version="1">MKSRRKIKARSSSSAVKTLTQPNIGRRDTASSSSAKAAASLNPLTQMSVSSSTCSQPTQNIFTSKQTTQTTINSEMEAGEMNLSAVNPPTQGDKPYFIADILLPSKTDKRYQEALEKLKPDRDIVTILKTSKTLTKRSKTETRQLPFSRPAPPPPPFSFPTGGGRMAIPQNIGRIEKMTTDGALFILLVSNSYVLIDLAHDLFPQRFPCIVLTAEAPPDFLIRMESELNLPVLALLDADPHSLEMLAFYGRSLKNLKWLGIRPSDIMAVSESSPRVVFPMNKKDIKTANMLLEKDAYVNNRPEWLYELGIMLEKKQKIEIECLTNWGVASYLTEVFLPMKLQQEDWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHK3</accession>
    <name>A0A392MHK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0007433</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010552">
        <property type="protein sequence ID" value="MCH86575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000041">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000299">
        <property type="entry name" value="Piriformospora indica-insensitive protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000711">
        <property type="entry name" value="Probable LRR receptor-like serine/threonine-protein kinase At1g12460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046956">
        <property type="entry name" value="RLP23-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063:SF112">
        <property type="entry name" value="RECEPTOR LIKE PROTEIN 30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 12" id="KW-0732">Signal</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017407634" evidence="12">
        <location>
            <begin position="30"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="13">
        <location>
            <begin position="30"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH86575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="448" mass="49193" checksum="E241B7F627DFDA9C" modified="2018-12-05" version="1" fragment="single">MRTQCQIHLSHALFIPILCLFWSIATVSPATEKEILLQFKGNITEDPYNTLSSWVSSGDPCQNYKGIFCNIEGFVERIVLWNTSLGGVLSPALSGLKSLRTLTLFGNRFSGNIPDDYAELKSLWKINVSSNVLSGLIPDFIGDLPNIRFLDLSKNGFIGEIPSALFRYCYKTKFVSLSHNNLVGSIPLSLVNCINLEGFDFSFNNLSGVVPSRLCDIPMLSYVSLRSNALSGSVQEHISACHSLMHLDFGSNKFTDLAPFSILGMQNLTYFNISYNGFEGQIPDITSCSERLEIFDASGNNLDGVIPSGITRCKNLKLLSLELNRLKGSIXXXXXXLRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLSNLNLTGEIPVDITNCKFLLELDVSGNNLDGEIPPAIYKMTNLEALDLHYNQIKGSIPSILGNLSRIQYLDLSHNSLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHZ8</accession>
    <name>A0A392MHZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ketohexokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011592">
        <property type="protein sequence ID" value="MCH87130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052562">
        <property type="entry name" value="Ketohexokinase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42774:SF3">
        <property type="entry name" value="KETOHEXOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42774">
        <property type="entry name" value="PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13293" checksum="DCDBE3683D58331F" modified="2018-12-05" version="1">MTNLCTTLSSNTSPFIFNVQPHSPLQPLKFYNATRKKHRSRNFMLKMCSSSSIPQNATVVGCGSLSVDFLATVAAYPKPDEKIRTTTLKVQGGGNAGNALTCLARLGLNTRLISKECLEQPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJA1</accession>
    <name>A0A392MJA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008004</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011605">
        <property type="protein sequence ID" value="MCH87139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000159">
        <property type="term" value="C:protein phosphatase type 2A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019888">
        <property type="term" value="F:protein phosphatase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21504">
        <property type="entry name" value="PPP2R3A_B-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000067">
        <property type="entry name" value="serine/threonine protein phosphatase 2A regulatory subunit B''beta-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14095:SF0">
        <property type="entry name" value="MIP22305P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14095">
        <property type="entry name" value="PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF-hand" evidence="2">
        <location>
            <begin position="107"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="255" mass="30583" checksum="612474C7EF660E9C" modified="2018-12-05" version="1">MTLRELKRGNIIDAMQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDANGVLTRNELQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIHPEDDSYVTLRDLKGSKLSGSVFNILFNLNKFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDVSNGSAEVWDESLEAPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJG4</accession>
    <name>A0A392MJG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lateral signaling target-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008509</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012607">
        <property type="protein sequence ID" value="MCH87632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035091">
        <property type="term" value="F:phosphatidylinositol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051702">
        <property type="entry name" value="SH3_domain_YSC84-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15629:SF43">
        <property type="entry name" value="RING_FYVE_PHD-TYPE ZINC FINGER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15629">
        <property type="entry name" value="SH3YL1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9293" checksum="608D90ED1F3D180D" modified="2018-12-05" version="1">MEYEIYKATNTIKSYNRIGLLKPEKTIPDAILRQAKGLAIITVVKVGVVVTYNIGTGIVVARREDGSWSPPSAVSTFGVGWGAQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJJ3</accession>
    <name>A0A392MJJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011782">
        <property type="protein sequence ID" value="MCH87229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="25409" checksum="E155BDBEA420B095" modified="2018-12-05" version="1">MAEPQDLNPPSTHPLDTHWVIPEIRNTRSMYCKYGINSAFCRVGNPDEWEVAPMVDGRVIRDTCLDCIIPMYEVVFESMQVTFPFTKFEVELLNIMRVAHSQIHPSGWALIKVYQFWFQCVKGKVPIWLFLNLFRVSHSGEGGRHGLIGFTQPKRLFEDFRNVPADFLQRYYSVGPKDRRGHVHLCEMPPADEEGFPLEEGDTCVRXFPFGRRRYLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJW3</accession>
    <name>A0A392MJW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008333</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012245">
        <property type="protein sequence ID" value="MCH87463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="267"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="273"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="290" mass="32037" checksum="EE5A5CEFD0B2D47B" modified="2018-12-05" version="1">MDNPGAQPLQQEHRNLQNLYDSLKPLIWRLYVDEANNPNRNGTLTAFAVGPGLLMTCAHGDWLNYKQLQITAKCLNKNGTFNGSVVARKVNCDMVIVRIRGEGVEEMEVARFGSGKLEVGETIMAFGHPWHLFASGMVGHNVYPCVDNPEFDLNDKVTCRKYLHDSLPEPPICRIMAHVWNRDIFNWARDDPTDMRNLSFEKNLLANCPIIHAAGMICGPGSSGAPVFNVKGELVGMHVYGIKSFEVCIHVTALRAFLENYLLRSGGGGSGGNASSSKGSASRQKRGRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLD1</accession>
    <name>A0A392MLD1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008678</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012936">
        <property type="protein sequence ID" value="MCH87799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="159"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="286"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="310"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="333" mass="37029" checksum="D73CDD452CBB809F" modified="2018-12-05" version="1">MVGKKEGMCLESTKAGKRINKQGQSKVNRGKNKPERFRISAARLQSSSTNPPTSSTNPPISTTNPLDRMDEFAQQLTQIQTLFQTTLAGVTNRVASLERRSPDSGSIGTSAPVNNINSAPPRLKLDVPCFDGTNPHGWIFKISQFFEYRRTPEEERITIASFYLDGAALAWYQWMYRNGQSVSWTQLXXXXXXXXXXXXXYDDPKGKLFKLTQSTTIAAYLAEFESLVNRIVGLSQPDLLSCFISGLKPEVRREVLAQQPTSLNQASGLARLQEEKLNDLYRFNRNRASGSWQPPKPHSVPTKGTAETQTATSSAPLLPTPSSKPRVVLFSQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLG0</accession>
    <name>A0A392MLG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-dependent lipid-binding family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014024">
        <property type="protein sequence ID" value="MCH88362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009291">
        <property type="entry name" value="Vps62"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48219:SF2">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 62"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48219">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 62-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06101">
        <property type="entry name" value="Vps62"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="161"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="341" mass="37461" checksum="404BF22699160934" modified="2018-12-05" version="1" fragment="single">PVPPSQAVMAVSNTYGRVRKPVDFHLIGSFQNIQGGGSDSHSVAASDCSLWLPVAPPGYTALGCVAHVGNQPPPNHVVHCLRSDLVTSAKYSDCIFNIPSNYQFTSGFSVWRIDNTIGSFFAHSSSGCPLNDRLLDLNHLLVWNSNRAPLISPVSDFNSDQENNNQQTTKGTNTSGWDILKSISKATNCYMSTPNFERIWWDKGNDLRRPVSIWRPVARHGYAVLGDCITEGVEPPALGIIFKNDNPDISSKPLQFTKVSHIVGKGIDEVFFWYPIAPPGYVSLGCVVSRTDEAPRADLFCCPRMDLVSQANINEAPLSRSSSSRAPQSWSIWKVENQAKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLG4</accession>
    <name>A0A392MLG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">GroES chaperonin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009221</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013974">
        <property type="protein sequence ID" value="MCH88337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044183">
        <property type="term" value="F:protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.33.40:FF:000005">
        <property type="entry name" value="20 kDa chaperonin, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="entry name" value="GroES chaperonin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001531">
        <property type="entry name" value="PRK00364.2-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772:SF40">
        <property type="entry name" value="(RAPE) HYPOTHETICAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="10 KDA HEAT SHOCK PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="19118" checksum="F8C9136D4BE837F4" modified="2018-12-05" version="1" fragment="single">YTTIKPLGDRVLLKIKEAEEKTQGGILLPSNAQTKPQGGEVVAVGEGKTPGKNQVENSVKPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTAGGLFLTQATKEKPSFGTNNMLSTIGIMVINCGRGCGNNCSCCYCGHCGCCNAQCGCCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN66</accession>
    <name>A0A392MN66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xanthine dehydrogenase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015175">
        <property type="protein sequence ID" value="MCH88956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.365.10">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046867">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444:SF3">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20256">
        <property type="entry name" value="MoCoBD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="Molybdenum cofactor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde oxidase/xanthine dehydrogenase second molybdopterin binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15394" checksum="6B2F010919830CFE" modified="2018-12-05" version="1" fragment="single">LVIACYMERIDLSAHGFYITPDIGFDWTTGKGKPFRYFTYGAAFAEVEIDTLTGDFHTRAANIFLDLGYSLNPAIDVGQIEGAFVQGLGWVALEELKWGDGAHKWIPSGWLNTCGPGAYKIPSINDVPLKFNVSLLKVCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNA0</accession>
    <name>A0A392MNA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein FAR1-RELATED SEQUENCE 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014148">
        <property type="protein sequence ID" value="MCH88419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004330">
        <property type="entry name" value="FAR1_DNA_bnd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46328:SF9">
        <property type="entry name" value="FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46328">
        <property type="entry name" value="FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03101">
        <property type="entry name" value="FAR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAR1" evidence="2">
        <location>
            <begin position="88"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="28637" checksum="F7E680AE08B81517" modified="2018-12-05" version="1" fragment="single">ELGIDDSVNGDAVRDAVMVEVGSIPDENIEEESSAEPTYKQDQDDNVTQDSSGGALTIPSAVPTLPDASADEPYVGQEFESEAAAHAFYNAYAAEVGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNPGSNRRDCMFEQYPSQNEHDKIRELSQQLAIEKKRSATYKRQLEVIFDYIEEHNVTLSHKIQHIVDSVKQMEPKEEDNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP43</accession>
    <name>A0A392MP43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein MODIFIER OF SNC1 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015538">
        <property type="protein sequence ID" value="MCH89131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040029">
        <property type="term" value="P:epigenetic regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038808">
        <property type="entry name" value="MOS1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34805">
        <property type="entry name" value="PROTEIN MODIFIER OF SNC1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34805:SF1">
        <property type="entry name" value="PROTEIN MODIFIER OF SNC1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="14498" checksum="EE05AABA7C2A8D67" modified="2018-12-05" version="1" fragment="single">GTLGWGSKSSSPASNAWGGSSLSPPNANAGASSPSHLSARPSSGGSGTRPSTSGSDRASEVTTSAWGSSSRPSSASGPPTSNQSSQTSLRPRSAETRPGSSQLSRFAENVAENSVAWNGSRTTETLVGFCSNLWLVTSYDFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPC6</accession>
    <name>A0A392MPC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Periodic tryptophan protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015725">
        <property type="protein sequence ID" value="MCH89221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027145">
        <property type="entry name" value="PWP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858:SF0">
        <property type="entry name" value="PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82171">
        <property type="entry name" value="DPP6 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18665" checksum="5E4D1D7341F3E955" modified="2018-12-05" version="1" fragment="single">MNFRFQNLLGAPYRGGNAVISNNTLLLSPVGNRVSVTDLRKSETTTLPIQSSSNISRIAVSPDGTFLLAIDDNNRCLFINLRRRALLHRITFKHRVGAVKFSPDGGLIAVGAGKLVQIWRSPAFRREFFPFELVRTFADFHAKITAFDWSPDSNYLLVASKDLTARI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ69</accession>
    <name>A0A392MQ69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009691</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014873">
        <property type="protein sequence ID" value="MCH88798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF21">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="5">
        <location>
            <begin position="41"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="4">
        <location>
            <begin position="157"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="106"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="112"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="126"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="379" mass="43320" checksum="8A4237BD229AE332" modified="2018-12-05" version="1" fragment="single">ALNTACYIHNRVTLRSGTATTLYELWKNKKPTVKYFHVFGSKCYILANREQRRKFDPKSDEGIFMGYSTNSRAYRVFNSITKTMMESINVVIDDSAEEKVTDVADDAVASDPHYDAPEIEKEPEGNSEISNSESNTAPPKKGPSIRVQKNHPQELIIVPIPENVNVIGTKWVYKNKSGENGIVTRNKARLVAXGYAQIEGVDFDETFXXVARLESIRLLLGVACILKFKLFQMDVKSAFLNGYLNEEVYVEQPKGFVDPSFPNHVYKLKKAPRAWYERLTEFLVSQGYRKGGNDKTLFVKEEKGKLIIAQIYVDDIVFGGMSSQMVQHFVQQMQSEFEMSLIGELTYFLGLQVKQMEDTIFVSQSKYCKKVWYGRYRSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQG3</accession>
    <name>A0A392MQG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Putative receptor protein kinase TMK1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0010628</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016760">
        <property type="protein sequence ID" value="MCH89727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000129">
        <property type="entry name" value="Leucine-rich repeat receptor-like kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000226">
        <property type="entry name" value="receptor protein kinase TMK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052422">
        <property type="entry name" value="Auxin_Ser/Thr_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47986">
        <property type="entry name" value="OSJNBA0070M12.3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47986:SF10">
        <property type="entry name" value="RECEPTOR-LIKE KINASE TMK4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="12 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 16" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="199"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="18">
        <location>
            <begin position="296"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH89727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="473" mass="51266" checksum="CBAD864D78C7D1A0" modified="2018-12-05" version="1" fragment="single">MNMSSLQKVSLKNNELQGPFPVFKDKNVTVEADGSNNFCLGNEPGPCNDTVMIMLQIAEGFGYPIKLAQEWKGNDPCQGGQSWQFVTCDKDKNIVSVILVKQNLQGTISPAFANLKKLKKLNLSGNNLTGSIPQSLTTLSQLETLDVSNNNLSGEVPKFSPKVTLVTGGNVWIGKNPDSGPNGRADGSGKGNSMTPGSIAGIVIGVVLFVVAVLFVSWKCYSRKRLRKFARVSNPENGEGNVKLDLACVSNGYGGVPSELQSQSSGDHSQLHGFDGGGDVNPTISIHILRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVASGSKGLNEFEAEIAVLTKVRHRHLVALMGYCINGNERLLVYEHMPQGTLTQHLFECREHGYTPLTWKQRLVIALDVGRGVEYLHSLARQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSIETKLAGTFGYLAPEYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQQ3</accession>
    <name>A0A392MQQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MATE efflux family protein DTX1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009901</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015271">
        <property type="protein sequence ID" value="MCH89008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11206">
        <property type="entry name" value="MULTIDRUG RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="221"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="298"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH89008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="337" mass="37087" checksum="3E6CD1F404CFA2DA" modified="2018-12-05" version="1" fragment="single">MSSTCSSNHKTNQPPSPSPPLQTRKCDANQTKTLLSEELKVQGSLAFPMVLMNLAWFAKTAITTAFLGRLGELSLAXXXXXXXXXXXXXXXXLNGLCGAMEPICGQAHGAKNIRLLHKTLLMTILLLLLVTIPITFMWLHIDKILIHFGQQQEISTVAGTYVFYLIPDLFVMSLLCPLKAYLSSQSITLPTMFSSGVALAFHIPVNILLSKTMGLKGVSMAVWITDLIVVVLLAIYVVILENRKGAAWKEGGWWDQSIMDWIRLIKLSGSCCLNTCMEWWCYEILVLLTGHLANAKQALGVLTIVLNFDYLLFSVMLSLATCVSTRVSNELGANQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRQ6</accession>
    <name>A0A392MRQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Exportin-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010836</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017229">
        <property type="protein sequence ID" value="MCH89932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005635">
        <property type="term" value="C:nuclear envelope"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005049">
        <property type="term" value="F:nuclear export signal receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006611">
        <property type="term" value="P:protein export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001494">
        <property type="entry name" value="Importin-beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013713">
        <property type="entry name" value="XPO2_central"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10997:SF8">
        <property type="entry name" value="EXPORTIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10997">
        <property type="entry name" value="IMPORTIN-7, 8, 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08506">
        <property type="entry name" value="Cse1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50166">
        <property type="entry name" value="IMPORTIN_B_NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Importin N-terminal" evidence="7">
        <location>
            <begin position="29"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="452" mass="50847" checksum="EFAB6830F1F8D1FB" modified="2018-12-05" version="1" fragment="single">MEWNPQTRQFLSDCFLHTLSPAPEPRRRAESSLSEASNLPNFGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDNPILEPEKQQIKTLIVPLMLSAPSKIQSQLSEALAIIGNHDFPKSWPTLLPELVASLQEASQSSDYVKVNGILGTANSIFRKFRFQYKTNDLLLDLKYCLDNFTAPLLEIFLKTASLIDSXXXTVPPPPAANLRPLFESQKLCCRIFYSLNFQELPEFFEDHMKEWMSEFRKYLTTSYPSLEGSGPDGLALVDELRSAVCENINLYMEKNEEEFQGYLNDFALAVWTLLVNVSQSTSRDQLAITAIKFLTTVSTSVHHALFAADGVIPQICQGIVIPNVRLRDDDEELFEMNHIEYIRRDMEGSDLDTRRRIACELLKGIATHYGDAVRNIASAQIQSLLSSFASNPTANWKDKDCAIYLVVSLSTKKAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSV2</accession>
    <name>A0A392MSV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011528</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018686">
        <property type="protein sequence ID" value="MCH90610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11903" checksum="7B68B446D23F1D7B" modified="2018-12-05" version="1">MVSATFRRIVSPCWRPSIVGENSSRYGDASGRSDGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQVESGPMSLIEGSPRGNLMALCFYRQTYIHGAVFLKCTVCVNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT65</accession>
    <name>A0A392MT65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Notchless-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0011668</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018971">
        <property type="protein sequence ID" value="MCH90746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848:SF0">
        <property type="entry name" value="NOTCHLESS PROTEIN HOMOLOG 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19848">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="5">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="5">
        <location>
            <begin position="36"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH90746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9456" checksum="4E1A205590C8DD35" modified="2018-12-05" version="1" fragment="single">VINQVCFSPDGQWVASASFDNSVKLWNGTTGKFVATFRHVRDVYQISWSADSRLLLSGSKDSTLKVWDIRTRKLKEDLPGHASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTE4</accession>
    <name>A0A392MTE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011749</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019141">
        <property type="protein sequence ID" value="MCH90826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="220"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="31712" checksum="38CB20CA5B601C35" modified="2018-12-05" version="1" fragment="single">TILQTYEEATGQEINMSKSEVYFSRNLSRAAQEDLSRIMGVKHVLGTGTYLGLPSMVGRSKKDTFGYVKDRIWKKINSWRGRALSKAGKEIMIKSVLQAIPSYVMSVYLIPETTIKEIERMINSFWWGGGTNNRGIKWMAWDRMSCPKEFGGLGFRDLHLFNMAMVAKQGWNFIMKPDTLVARIYKARWRIGDDTKIKVMNEPWLKKEDGFWLQAPQEQVERARAENVDWKGIWKTHAPPKAKHLIWRICKGCLPTRIRLKERKYKSMASSWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTS4</accession>
    <name>A0A392MTS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">O-acyltransferase WSD1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019335">
        <property type="protein sequence ID" value="MCH90917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8620" checksum="D160D68057237C44" modified="2018-12-05" version="1" fragment="single">MGALLSCLHRADDSSLPLSFPNRKSSQLLTPKKAKSSIIEDDKTPIWNGEEGSEFLPCALTNLSFSLDEIKTIKSKLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU36</accession>
    <name>A0A392MU36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lysine-specific demethylase JMJ14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019588">
        <property type="protein sequence ID" value="MCH91056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034647">
        <property type="term" value="F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003349">
        <property type="entry name" value="JmjN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10694">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10694:SF105">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02375">
        <property type="entry name" value="JmjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00545">
        <property type="entry name" value="JmjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51183">
        <property type="entry name" value="JMJN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="JmjN" evidence="2">
        <location>
            <begin position="18"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="263" mass="30087" checksum="646510C0E519ABBC" modified="2018-12-05" version="1" fragment="single">ISARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRNRKNSKTGTCRRVSNSASEAKNASEADEKYGFQSGSDFTFKDFQQYAKYFKECYFGLKDANEDGKVSDSNQEKRRMPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUH0</accession>
    <name>A0A392MUH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019401">
        <property type="protein sequence ID" value="MCH90953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10808" checksum="CB99F39D33F59A00" modified="2018-12-05" version="1" fragment="single">DDEAGSSAAGSSQRRSTRAQVQEPHELEGEVVGQILNADADLASDGDGVDDAVQPQPREAPEEGYGGGPRDMSLLHAYHKHRAIAIWDATSPEDQLYNYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUK9</accession>
    <name>A0A392MUK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017349">
        <property type="protein sequence ID" value="MCH89984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF559">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN CHL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="39"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11846" checksum="EB3247AF05E8AB2B" modified="2018-12-05" version="1" fragment="single">HEALLVESIAQHIHRKLVPKLPSCTENLVGIASKVEEVNKLIGMGLNDVRFIGIWGMGGIGKTTIARAVYEAIHCEFEVTCFLVNVREMSESNGLVHIQRQLLSHLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV33</accession>
    <name>A0A392MV33_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020251">
        <property type="protein sequence ID" value="MCH91357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="217" mass="24818" checksum="7142675AD3B44F5D" modified="2018-12-05" version="1" fragment="single">AAVNSVVVTEQDDRWVWSPNVDEGFSVKSFPIQGVPLAWQLFLDRIPTKENLCRRGIINSIDARCPLCDIAVESSRHLFLHCAFAAEVWYAVNRWLGVVVVPPWEVRNDRVFNNTNGVAEVAVESIQRISWQWFLSKTATSSCLLYEWKWNPADCVAGMRFAVHSRESGPGHLKXYLFSSRESGPGHLKFDQEVYQLDYKARVILQDMHITTTDSDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY23</accession>
    <name>A0A392MY23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022650">
        <property type="protein sequence ID" value="MCH92420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF75">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="168"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="27411" checksum="50F65B2CF875811A" modified="2018-12-05" version="1">MHTDSGELTLKDAYLHFAPIGPNISWAKSIWNAAIPPSKSFMVWRLFHNRLPTDENLASRGFQLPSCFCNVPLLLGWHPQGHVTVAAVVIYIFNAIWSCRNLLRFEDIIPNLNSTISMISANVSLVGNYTSLTAGPSMTDFQILKFFNVTIHHSKAPKIIEVLWTPPLQGWLKCNTDGSSLGNPGLAASAGIFRNFKGENVGCFAMNIGIATAFYAELMAVILAIEGGASEMAAEGLSVQEQILTLSRCQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZD6</accession>
    <name>A0A392MZD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023230">
        <property type="protein sequence ID" value="MCH92692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7927" checksum="940B0534CB502342" modified="2018-12-05" version="1" fragment="single">VRMAEEQPQPSVPNRRVVDLSWVADEPRHTVSIYADMFTDIQNSRKIGKSVSPPRGVGFVVSGTRAPSQCTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N011</accession>
    <name>A0A392N011_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein FAM38B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022931">
        <property type="protein sequence ID" value="MCH92555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N011"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071260">
        <property type="term" value="P:cellular response to mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042391">
        <property type="term" value="P:regulation of membrane potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027272">
        <property type="entry name" value="Piezo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167:SF47">
        <property type="entry name" value="DUF3595 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="323" mass="37581" checksum="AC894D3D013840DA" modified="2018-12-05" version="1" fragment="single">MYNFVVIVLSLAYQSPFVGDFREIKSGSIERINELVGFHKYDYGFRITSRSSFVEIIIFMLVSLQSYMFSFPEFVYVSKYLEKEQIGAILRQQEKKADWKTAQLQHTRKAEELKHLRSLQVEKMKSEMLNLQDQLHNMSTDANCSNPSLDIDGLRERGNSKLDFLRENEFRKQDIDINTESVGPFDVNQSLLSEKSASPLVPEYWKYPMDTPRGIVDIKERTKSSDYLDLEIRNRYKLRVRRNALVSAVHFIGNGVSQVQSLGNMAVNNLMNYLKIEREELEPTEDSSDDEEYYEIENQNTGAEPLEYTFSTHSVHEHIVPDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0Y4</accession>
    <name>A0A392N0Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024848">
        <property type="protein sequence ID" value="MCH93401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2741" checksum="7335A50B69740B4D" modified="2018-12-05" version="1" fragment="single">MLVPVASGEPPLLPAASVHRASRSAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N856</accession>
    <name>A0A392N856_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">L-type lectin-domain receptor kinase IX.1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0016924</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031127">
        <property type="protein sequence ID" value="MCH95941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N856"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050528">
        <property type="entry name" value="L-type_Lectin-RKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27007">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 14" id="KW-0430">Lectin</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="138"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="207"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH95941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="244" mass="27248" checksum="FD3F9F27A17429EE" modified="2018-12-05" version="1" fragment="single">MVSSSNQIVHVEFDSLANNEFRETTGHVGINNNSIISSITTPWNASKHSRDTADVLVSYNSTTKNLTVSWKYQLTTDPQEKTSLSYSIDLMKVMPEWVTVGFSAATSHIGELNFLLSWEFNSTLAKSGDNNTKETRLVIILTVSSGVALLMGVGALVTYALLWRKRKRSGRQKEEAMHLTLMNDDLERGAGPRRFIYKELEIATNNFSMDRKLGRGGFGAVYRGYFADLDSHVAVKKISRGSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N862</accession>
    <name>A0A392N862_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tryptophan synthase beta chain 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0015637</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027891">
        <property type="protein sequence ID" value="MCH94674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N862"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004620">
        <property type="term" value="F:phospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24185">
        <property type="entry name" value="CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24185:SF1">
        <property type="entry name" value="CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13272" checksum="C614554D69649FD5" modified="2018-12-05" version="1" fragment="single">MLISVPVERFSHPLISALSNVRLVVERFSHPPTALPETELRQCVELVELSLEHNRLVRPLLDFRAMSELRVLRLFGNPLEFLPEILPLHKLRHLSLANIRIVADENLRSVNVQIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N966</accession>
    <name>A0A392N966_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">CW-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0016537</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030124">
        <property type="protein sequence ID" value="MCH95558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N966"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055300">
        <property type="entry name" value="CWZF3/5/7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011124">
        <property type="entry name" value="Znf_CW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46524:SF12">
        <property type="entry name" value="CW-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46524">
        <property type="entry name" value="CW-TYPE ZINC FINGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07496">
        <property type="entry name" value="zf-CW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51050">
        <property type="entry name" value="ZF_CW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CW-type" evidence="5">
        <location>
            <begin position="244"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="22"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="84"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="137"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="160"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH95558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="283" mass="30969" checksum="78297054FA070AFC" modified="2018-12-05" version="1" fragment="single">ENGVQGRMVSVEALKEESLESISGQDFKKIENQNAGNGSRKNVLEDKLESSQKGSSTDPKNEDKCNTDTVSKNVERDAVKCKIDKKYETPQRVKVVSEGKNKSKGDQSLGKPEVVARKDSFNNAMETDKGDADFGTASRSKIIKTNSVKDNKVRGSSKGSLKEKKSDQKVDGFPGNSAVKTSKSINNNEKSITFGAKVKERPSGNKVVNHLLAGPCKTDALGLFPMAENNPAPEMIPLEVAAPQLIAEDWVACDSCQKWRLLPTGLKPEQLPEKWLCSMLDWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9A4</accession>
    <name>A0A392N9A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transmembrane and coiled-coil domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032249">
        <property type="protein sequence ID" value="MCH96406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17982" checksum="CACA51ED1AB22B93" modified="2018-12-05" version="1" fragment="single">DIDSSAWYGLEETSGSSTATHHVGPFMRLLSQESDDASAESAQRLDKELALSKAVDAIVLGMEKNLQPSKSKRERLHEYEQRCREKFSAPDVQSNSEKVDVDVNLENKNEIDVAPLINFEETHEGPDNSKIDERPIEEVMMLSDQRKVTVLYELLSACLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9Y5</accession>
    <name>A0A392N9Y5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031133">
        <property type="protein sequence ID" value="MCH95945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9Y5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10489" checksum="AB0A3FE90D1E4D4F" modified="2018-12-05" version="1" fragment="single">IVKVEEEEKEAIKMEEEEEQETAVEEKDKDKDEAPDSLPDADKHSKEAANTKLLQRPTPQMHLTANLNPSAKEVNNAALRLNNIVLIINEGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA37</accession>
    <name>A0A392NA37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">2-oxoglutarate dehydrogenase mitochondrial-like-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0017669</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032951">
        <property type="protein sequence ID" value="MCH96680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045252">
        <property type="term" value="C:oxoglutarate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11610">
        <property type="entry name" value="Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042179">
        <property type="entry name" value="KGD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031717">
        <property type="entry name" value="ODO-1/KGD_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152:SF4">
        <property type="entry name" value="2-OXOADIPATE DEHYDROGENASE COMPLEX COMPONENT E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="2-OXOGLUTARATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16870">
        <property type="entry name" value="OxoGdeHyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="2-oxoglutarate dehydrogenase E1 component/KDG C-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7562" checksum="A6A7511B929C3E4C" modified="2018-12-05" version="1">MNMGGYNYVLPRLITSMKSLGRGGYDDIKYVGRAPSAATATGFLKVHHKEQTELVEKALQSEPINFPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAJ7</accession>
    <name>A0A392NAJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017856</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033475">
        <property type="protein sequence ID" value="MCH96866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10552" checksum="DE6C02F75EFAD4B2" modified="2018-12-05" version="1">MISRKLWWILCTAYKKKLLKKSSAFDIESDKNVEADHKVAADSSGKRKSLREIPHKDMFKRGVTTLTQTTINGIYQCPYMCLPSNSSYRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBG2</accession>
    <name>A0A392NBG2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">protein-S-isoprenylcysteine alpha-carbonyl methylesterase</fullName>
            <ecNumber evidence="4">3.1.1.n2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0018189</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[protein]-C-terminal S-[(2E,6E)-farnesyl]-L-cysteine methyl ester + H2O = [protein]-C-terminal S-[(2E,6E)-farnesyl]-L-cysteine + methanol + H(+)</text>
            <dbReference type="Rhea" id="RHEA:48520"/>
            <dbReference type="Rhea" id="RHEA-COMP:12125"/>
            <dbReference type="Rhea" id="RHEA-COMP:12126"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17790"/>
            <dbReference type="ChEBI" id="CHEBI:90510"/>
            <dbReference type="ChEBI" id="CHEBI:90511"/>
            <dbReference type="EC" id="3.1.1.n2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AB hydrolase superfamily. Isoprenylcysteine methylesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.n2" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010034333">
        <property type="protein sequence ID" value="MCH97196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049492">
        <property type="entry name" value="BD-FAE-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050300">
        <property type="entry name" value="GDXG_lipolytic_enzyme"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48081">
        <property type="entry name" value="AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48081:SF33">
        <property type="entry name" value="KYNURENINE FORMAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20434">
        <property type="entry name" value="BD-FAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BD-FAE-like" evidence="6">
        <location>
            <begin position="5"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00038028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00038928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00049507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF20434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH97196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13731" checksum="913C76D7CE93D4C1" modified="2018-12-05" version="1" fragment="single">IVRRNFPQATISDMIEDASQGISFVCNNIAEYGGDPNRIYLMGQSAGAHIAACTIVEQAIKEAGEGESTSWSLSQIKAYFGLSGGYNLFNLVDYFHSRGLYRSIFLRFDLLQYNGRGGITTAVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBT4</accession>
    <name>A0A392NBT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative inactive receptor kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031157">
        <property type="protein sequence ID" value="MCH95954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046959">
        <property type="entry name" value="PRK1-6/SRF4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48007">
        <property type="entry name" value="LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48007:SF43">
        <property type="entry name" value="POLLEN RECEPTOR-LIKE KINASE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="13098" checksum="D3E5B3DC36FEFD45" modified="2018-12-05" version="1" fragment="single">MMTVEERKELMFFNDETNFQMGELLRASAEALGHGIMGNSYKAMLNNGHNIVVKRLRDLKPFTKEEFAKIVKIIADLKHPNLLPLLAYYHSRDEKXMLYRYAQNGNLFSRLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC55</accession>
    <name>A0A392NC55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP-binding protein TypA/BipA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017778</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033261">
        <property type="protein sequence ID" value="MCH96789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="TR-TYPE G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908">
        <property type="entry name" value="TRANSLATION ELONGATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5388" checksum="324C01E6F20F08CC" modified="2018-12-05" version="1" fragment="single">VERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCE1</accession>
    <name>A0A392NCE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0018475</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035066">
        <property type="protein sequence ID" value="MCH97480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338:SF73">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RGA2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338">
        <property type="entry name" value="TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="4">
        <location>
            <begin position="11"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH97480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20215" checksum="CFFFA644794A8967" modified="2018-12-05" version="1" fragment="single">MAESFVFDIADSLLGKLASYVYEEASRAYGVSKDLQRIKDTLSIVRGLLLDAELKKNQQHALREWLKQIQNICYDADDVLDEFELQNKKKQVLEASGSTMVKVRRLFSSSNPLAFRFRMAHQLKKLKNRLNKVAADGTGFGLVRIDYESGLAVQRRELTHSHVDASNVIGRENDKEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCK9</accession>
    <name>A0A392NCK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018417</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034923">
        <property type="protein sequence ID" value="MCH97422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4604" checksum="899FCC59CCB7C3DD" modified="2018-12-05" version="1" fragment="single">IQGLWKVKNQNMGYLCNEAKELKDKFLSFKINHVLRVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCQ5</accession>
    <name>A0A392NCQ5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017288</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032017">
        <property type="protein sequence ID" value="MCH96304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="93" mass="11003" checksum="C267EF0927BE7345" modified="2018-12-05" version="1" fragment="single">MKLMSFNLRGWGDSAKRRRLGSLINSCKFDLCMLQETKRSSFEEFSNVNLWGHKDVEWVAKESEETKRSSFEEFSIVNLWGHKDVEWVAKELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE20</accession>
    <name>A0A392NE20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribulose bisphosphate carboxylase/oxygenase activase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast stroma</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036753">
        <property type="protein sequence ID" value="MCH98116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009579">
        <property type="term" value="C:thylakoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046863">
        <property type="term" value="F:ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044960">
        <property type="entry name" value="RCA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32429">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32429:SF19">
        <property type="entry name" value="RIBULOSE BISPHOSPHATE CARBOXYLASE_OXYGENASE ACTIVASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15745" checksum="D878A74F60D1651E" modified="2018-12-05" version="1" fragment="single">MSLNGSVVAGPSVSNSAFFGTSLKKITSRIPNSKVSSGSFKVYAAKEIDESKQTDGDRWRGLAYDTSDDQQDITRGKGMVDPVFQAAADAGTHYAIMSSHEYISTGLRTYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFG0</accession>
    <name>A0A392NFG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein SPA1-RELATED 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036667">
        <property type="protein sequence ID" value="MCH98083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009640">
        <property type="term" value="P:photomorphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044630">
        <property type="entry name" value="SPA1/2/3/4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44218">
        <property type="entry name" value="PROTEIN SPA1-RELATED 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44218:SF15">
        <property type="entry name" value="PROTEIN SPA1-RELATED 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7766" checksum="9B33832DFC55E528" modified="2018-12-05" version="1" fragment="single">MSDLHHRILPPAFLSENPKEAGFCLWLLHPEPSSRPTTGCLVLPVGLGVETESPTLNSVYKWAEPPPYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFK8</accession>
    <name>A0A392NFK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034651">
        <property type="protein sequence ID" value="MCH97324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3964" checksum="B7AFE15643614C24" modified="2018-12-05" version="1" fragment="single">MGGRVTNEDNQSLTRDFHIEEFKDALSSMHSDKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIA3</accession>
    <name>A0A392NIA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">U6 snRNA-associated Sm-like protein LSm5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0019978</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038997">
        <property type="protein sequence ID" value="MCH98969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990726">
        <property type="term" value="C:Lsm1-7-Pat1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046540">
        <property type="term" value="C:U4/U6 x U5 tri-snRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005688">
        <property type="term" value="C:U6 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033871">
        <property type="entry name" value="LSm5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20971">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20971:SF0">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0747">Spliceosome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH98969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3615" checksum="8B524CDEB8BF4A46" modified="2018-12-05" version="1" fragment="single">EITAEGRRITKLDQILLNGNNIAILVPGGSPDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMF0</accession>
    <name>A0A392NMF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sec14 cytosolic factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021612</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043682">
        <property type="protein sequence ID" value="MCI00592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="12"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9327" checksum="ECF1CE2B4F0276A7" modified="2018-12-05" version="1" fragment="single">MIICRLVTGIDTSTAESRSEAEDNDIASPKTGKGYSHLSLNPVRDEVKGIDTSTAESRSKAEDNDITSPKAVPSYSHLRLTPVHEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR33</accession>
    <name>A0A392NR33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein EXECUTER</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022563</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046405">
        <property type="protein sequence ID" value="MCI01536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NR33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042651">
        <property type="term" value="C:thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010343">
        <property type="term" value="P:singlet oxygen-mediated programmed cell death"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044680">
        <property type="entry name" value="EX1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33917">
        <property type="entry name" value="PROTEIN EXECUTER 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33917:SF2">
        <property type="entry name" value="PROTEIN EXECUTER 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25587" checksum="241C24AEB966DA37" modified="2018-12-05" version="1" fragment="single">VVYLRRAKGNSTSNSPSLPVKGPYKPEVENLSSVEEQEPEEKVDERNDEKNNNVEAATEEGIKSVINFLKEKIPGLKVKVMNVNVEEEAREASDSIKQIMEEDGNKTSSSDNPEGEVSNLDEPDEITLEDDGDSSEDEKDLDMKLFIGGIVHNNEDTATKDEFIRLPAEIKNMERDSFLLHIPRRNLDNDRREDKVRNIKVAALAAQGISELMPSDVAKAFWGSDKVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS55</accession>
    <name>A0A392NS55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049836">
        <property type="protein sequence ID" value="MCI02671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NS55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10362" checksum="B156B25DBB0BA3FC" modified="2018-12-05" version="1" fragment="single">NVGANVNVRLFRGYATTAAVREGHLKVLEVLINGGASQLACEEALLEASYVGRATFAELLMQSNMIRPHVAIHALVSSCCRGFIEVVDVLIKVRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSF6</accession>
    <name>A0A392NSF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023364</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048798">
        <property type="protein sequence ID" value="MCI02332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6810" checksum="2C6F4F21D0A5AABC" modified="2018-12-05" version="1" fragment="single">MYSHPPVEVDEDEQDIEQEEHDVEEEEVVEDENMMDVGANEEDEEEVVEEAKINAKEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSN7</accession>
    <name>A0A392NSN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050504">
        <property type="protein sequence ID" value="MCI02888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3655" checksum="BD0A91C783AB8429" modified="2018-12-05" version="1" fragment="single">SNALLGSGSLVRPRVTLAPYTSGGWNPPCAGLDRGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NV22</accession>
    <name>A0A392NV22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cohesin subunit SA-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024707</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052885">
        <property type="protein sequence ID" value="MCI03667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008278">
        <property type="term" value="C:cohesin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039662">
        <property type="entry name" value="Cohesin_Scc3/SA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11199:SF0">
        <property type="entry name" value="LD34181P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11199">
        <property type="entry name" value="STROMAL ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017346812" evidence="1">
        <location>
            <begin position="17"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11931" checksum="D9F3D2F74C3CE1AE" modified="2018-12-05" version="1" fragment="single">MLYLFIMLEFCSLAYLILDEVEDDDVNKDVTKEYSEETNKCAVLLAACKLIASNIVPKDYLAPEXISHFVMHGAHVADIIKHLITFLKKREDDWSAIFLEALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWN7</accession>
    <name>A0A392NWN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein kinase ATM-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050528">
        <property type="protein sequence ID" value="MCI02895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:DNA damage response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1010.10">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038980">
        <property type="entry name" value="ATM_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000403">
        <property type="entry name" value="PI3/4_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50290">
        <property type="entry name" value="PI3_4_KINASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PI3K/PI4K catalytic" evidence="1">
        <location>
            <begin position="27"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7523" checksum="3599AEA505CE75F6" modified="2018-12-05" version="1" fragment="single">VPVVTATISIDRSCQYHEGTFPYFKGLADSVMIMNGINAPKVVECLGSDGCRYRQLAKSGNDDLRQDAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7K9</accession>
    <name>A0A392P7K9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Carboxypeptidase</fullName>
            <ecNumber evidence="4">3.4.16.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0029146</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the peptidase S10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.-" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010067678">
        <property type="protein sequence ID" value="MCI08073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019748">
        <property type="term" value="P:secondary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001563">
        <property type="entry name" value="Peptidase_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018202">
        <property type="entry name" value="Ser_caboxypep_ser_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11802:SF254">
        <property type="entry name" value="SERINE CARBOXYPEPTIDASE-LIKE 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11802">
        <property type="entry name" value="SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00450">
        <property type="entry name" value="Peptidase_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00724">
        <property type="entry name" value="CRBOXYPTASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00131">
        <property type="entry name" value="CARBOXYPEPT_SER_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017098566" description="Carboxypeptidase" evidence="4">
        <location>
            <begin position="20"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI08073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13527" checksum="77F53C550654A557" modified="2018-12-05" version="1" fragment="single">MRLITVVCLDLNLKLFAHSQDCPFNFETAKTKGSLPTLHLNPYSWNKVSSIIYLDSPAGVGFSYPKNETDYETGDIKTASDSHAFLLKWFKLYPEFLSNPFFIAGESYAGVYVPTLAYEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8I8</accession>
    <name>A0A392P8I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067757">
        <property type="protein sequence ID" value="MCI08104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="23874" checksum="48195C7398D2F7CB" modified="2018-12-05" version="1">MAGVNNHQADEHTADNSQMGYPVFHQEDGHTASATEGSQGHQMDYEPYNPEQPHIQAALPLPENAALALVPGAPMQDITAALVRAINRQSDMILQQNQMFAEQNRRFESQSRRIDAIAESRVTMQHRRVHRSPTPARSRSFSRSRTPPRGRVHXXXXXXXXXXRYQLDWKSLQQWTLTTARQTLTSILKTLKLSSSTVTYEDLSSASCSQPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8K8</accession>
    <name>A0A392P8K8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoenolpyruvate carboxylase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0028665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065982">
        <property type="protein sequence ID" value="MCI07596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8K8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008964">
        <property type="term" value="F:phosphoenolpyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015977">
        <property type="term" value="P:carbon fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.90">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021135">
        <property type="entry name" value="PEP_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30523">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30523:SF6">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00311">
        <property type="entry name" value="PEPcase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15440" checksum="01CBFA188238358B" modified="2018-12-05" version="1" fragment="single">MHFFYVQLERSRRRLELLLEDVSCDYHPLDYYETADQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAITMYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVNME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF36</accession>
    <name>A0A392PF36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Splicing suppressor of white-apricot-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0031816</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077366">
        <property type="protein sequence ID" value="MCI10721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000395">
        <property type="term" value="P:mRNA 5'-splice site recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040397">
        <property type="entry name" value="SWAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019147">
        <property type="entry name" value="SWAP_N_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13161">
        <property type="entry name" value="SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13161:SF15">
        <property type="entry name" value="SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09750">
        <property type="entry name" value="DRY_EERY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01141">
        <property type="entry name" value="DRY_EERY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="4" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Suppressor of white apricot N-terminal" evidence="6">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="47"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI10721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9654" checksum="469C03EB86330DFB" modified="2018-12-05" version="1" fragment="single">MDLEVVGRHAMLFDDDGMAAFVNSPEALVDWNSLSIDRYDVRHLLSGPIPPRLKRRPHPPSSIEADLDHQRYLDLPSSPPHEQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFJ8</accession>
    <name>A0A392PFJ8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075528">
        <property type="protein sequence ID" value="MCI10259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36363">
        <property type="entry name" value="OS04G0687200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36363:SF1">
        <property type="entry name" value="OS04G0687200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="161" mass="19068" checksum="D56C7DADF382A43C" modified="2018-12-05" version="1" fragment="single">MADYETHHHHQHQQQVVSRETAFQALNTIIQLHFEKTLEKKRAIDLQKKELHKLFQIFFIFLSLVFMAQSMSPRLQCRHCWIPITLLSMAHLIFYVSVAQTLRCINGFKYQRRCHKLTLGLATEKLRDMKMRLSSGGXADYDAIGDEEFEIHYQEPPESYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJR7</accession>
    <name>A0A392PJR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aquaporin TIP2-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0033422</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083721">
        <property type="protein sequence ID" value="MCI12318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009705">
        <property type="term" value="C:plant-type vacuole membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015250">
        <property type="term" value="F:water channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="entry name" value="Glycerol uptake facilitator protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45665:SF37">
        <property type="entry name" value="AQUAPORIN TIP2-3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45665">
        <property type="entry name" value="AQUAPORIN-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="Aquaporin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI12318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="14201" checksum="1A29578BF793F48F" modified="2018-12-05" version="1">MSPLSQNSISNCPKRLSVPTHGVAAGLNPIAGLVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGNFADNWIYWVGPLIGGGLAGLIYGDIFIGSYAPAPSTETYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK04</accession>
    <name>A0A392PK04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0032931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081668">
        <property type="protein sequence ID" value="MCI11829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5836" checksum="C93301A4027109AD" modified="2018-12-05" version="1" fragment="single">ASPIQLAGRQIYIEERRPSSGGAARGGRAMCASHVCAVALALLVVDFWLFLLRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKJ0</accession>
    <name>A0A392PKJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0032918</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081612">
        <property type="protein sequence ID" value="MCI11816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6456" checksum="249E31DBEFB0CA39" modified="2018-12-05" version="1" fragment="single">MKLLVATPLXTWVTIYHPINDALKLWQDFKYLTHFFHLLLTVLLVFKFRAVVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR98</accession>
    <name>A0A392PR98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Importin subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0034957</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the importin alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089819">
        <property type="protein sequence ID" value="MCI13836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23316">
        <property type="entry name" value="IMPORTIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="ARM" evidence="5">
        <location>
            <begin position="8"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI13836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10913" checksum="6F2A3748A7A26B88" modified="2018-12-05" version="1" fragment="single">TKVVIDHGAVPPFVVLLSSPYYDVRDQAVWALGNIAADSSQHRDLVLLHGALDSLVRHLEAFIDLIIRRGPFPLLLPKSEEHGLFETILIFSFYDVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USZ8</accession>
    <name>A0A392USZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010962479">
        <property type="protein sequence ID" value="MCI78947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4969" checksum="DF508ACBEC4BA496" modified="2018-12-05" version="1" fragment="single">RLLERNGNDDEALDDKRRKKTKKKGKRSGYFSDESDHDDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTQ8</accession>
    <name>A0A392UTQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952317">
        <property type="protein sequence ID" value="MCI78512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="16" mass="1751" checksum="B25F6C376CC19BB4" modified="2018-12-05" version="1" fragment="single">MVENHKMDSGVGYARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUY9</accession>
    <name>A0A392UUY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0099972</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010956740">
        <property type="protein sequence ID" value="MCI78701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="63"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="19"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI78701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8437" checksum="300A67AD056A69B7" modified="2018-12-05" version="1" fragment="single">MRNKRMNRQGNFSAGGPSRPGNQNQNRGRQGNMPYNRPRNNRGPNRSGTQGTQGSQVREKLTCFKCGEEGHYANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV70</accession>
    <name>A0A392UV70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100052</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010958950">
        <property type="protein sequence ID" value="MCI78781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4295" checksum="EDAEDEA122A22517" modified="2018-12-05" version="1" fragment="single">VEVVPGRDGCYEPLGAEEEFLTSNESGWCFSSSACSPPEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW80</accession>
    <name>A0A392UW80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0100412</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967058">
        <property type="protein sequence ID" value="MCI79141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="43"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI79141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8043" checksum="775A10932E260542" modified="2018-12-05" version="1" fragment="single">ANYYKAANEKRGKDLGRGKPYDKGGKKVNESGSGGKGKGDGNCFKCGLPGHHFFKCPRKDGKCLKCGDPGHKTEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWT4</accession>
    <name>A0A392UWT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099911</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955539">
        <property type="protein sequence ID" value="MCI78640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4739" checksum="AABF4E00EE11A852" modified="2018-12-05" version="1" fragment="single">PGLRKAQLGEPERAHQAKAGREAARHGQQGCFAQDFTKIHPSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXU1</accession>
    <name>A0A392UXU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010979783">
        <property type="protein sequence ID" value="MCI79711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7819" checksum="7E066F77C944F852" modified="2018-12-05" version="1" fragment="single">VRDDLTIETVPLRIEGREVKRLRNKEITSVKVVWRGPAGENATWELESKMRSSYPDLFSSNFRGRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYY7</accession>
    <name>A0A392LYY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH dehydrogenase (Ubiquinone) 1 beta subcomplex</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000815">
        <property type="protein sequence ID" value="MCH80232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14758" checksum="B8BFD0368431BF83" modified="2018-12-05" version="1">MGRKKGYVEFEESPPDEFDPANPYKHSVARNVMRTPFLTKIQQHTLFVHPFFPLFSLHSLFSNATMSITATATTALHHTKGTATTVLHPLSQPLTPLSSSLSLAKSLSTRSLSCSVHTIRSHEHHLRPPPPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZM6</accession>
    <name>A0A392LZM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADP-specific glutamate dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001070">
        <property type="protein sequence ID" value="MCH80453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004354">
        <property type="term" value="F:glutamate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.285.10:FF:000007">
        <property type="entry name" value="NADP-specific glutamate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val/Trp_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050724">
        <property type="entry name" value="Glu_Leu_Phe_Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43571">
        <property type="entry name" value="NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43571:SF1">
        <property type="entry name" value="NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11141" checksum="67D65DBBE5843F8B" modified="2018-12-05" version="1">MPCTPDAVQVLRKANILVAPAMAAGAGGVVAGELELNHECSLMNWSPEDFESKLQEAMKQTYQRAIKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQDCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZT0</accession>
    <name>A0A392LZT0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Protein FAR1-RELATED SEQUENCE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0001272</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Putative transcription activator involved in regulating light control of development.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the FHY3/FAR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001127">
        <property type="protein sequence ID" value="MCH80503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031052">
        <property type="entry name" value="FHY3/FAR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006564">
        <property type="entry name" value="Znf_PMZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31669:SF292">
        <property type="entry name" value="OS02G0262500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31669">
        <property type="entry name" value="PROTEIN FAR1-RELATED SEQUENCE 10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00575">
        <property type="entry name" value="ZnF_PMZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 5 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="9">
        <location>
            <begin position="7"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="8">
        <location>
            <begin position="170"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="145"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="197"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU367018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH80503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="23396" checksum="93DF68BE2FE5462D" modified="2018-12-05" version="1" fragment="single">KYRDEGYVWRVSHSPLTDEFKCSCLRMESIGIPCEHIVAILVYLDFVDFPNSLVLNRWSKFAKESIRGNYEDGSHYWDSHLVARHANLVYLSKEVSDLAYIDVDDYRQSLDYLTDELNRLKGKYLEGNGPHNLHVPVEVEDILNPQCSRSKGGGQSANTTTGRPMRPNSCGRCGEGGHNKRSCPALATNGEFPAGSSVPSQSVRLSDDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0U1</accession>
    <name>A0A392M0U1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF7745 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001686</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001635">
        <property type="protein sequence ID" value="MCH80910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0U1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056647">
        <property type="entry name" value="DUF7745"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48154">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48154:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24924">
        <property type="entry name" value="DUF7745"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7745" evidence="2">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="168"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="168"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="414" mass="48650" checksum="48F788B0BAF6425C" modified="2018-12-05" version="1">MPKKSSVVENLAEVKWSQELMALTERDISWYSREYADTEVILRCGEFPNVPLIGTRGYINYNHVLALRQLGYPMEDKPDDDMLEGFVLKKGVENPTLIRKIRKAWGEVIKLPFIITTPNRPLSPAPITTVPIEEADELKAKIAEFQGKNEELQLKHLQAVGEVARLKRDQEDKEKSLQKNRKRLRESEEKRKKIGEGLDSVEANLIAKKEELKRVEHSNKYLRNFGELASKAQKKWREKYQGQVQKVQELDKRYKELLQTENIQSQEFENLYFQERSKCERLQANVEAYEDRCGQLQASVEMYEEYFAQHARRHEDQIAQLKDELENTRTKLAQYENAFDITRRDAAFWRNGFRDLAALSNLVIAELPEKLRDAEAAMHYYILPKDVADFMEYCKDVLKQYREEIRNTKRRVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1E3</accession>
    <name>A0A392M1E3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001865">
        <property type="protein sequence ID" value="MCH81086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1E3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="532"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="502"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="192"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="318"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="333"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="355"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="383"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="502"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="566" mass="64746" checksum="B6AA08AA2E27F6C2" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1W1</accession>
    <name>A0A392M1W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001781</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001751">
        <property type="protein sequence ID" value="MCH81003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="237"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="400" mass="44726" checksum="08494CC29453CF97" modified="2018-12-05" version="1">MNKACLLKLGWKLHTGANEFWCDVLRGKYAFNNLNADITYRNSDSSLWKAIAKLVPCLYEHGSWIVGDGRDVPAWNSVCLEPGLRLKDQDFNIPAAWTDAKLCDLVDENGDWKWQELRSWIPQELLHKFASSLPPQEVYGRDEYIVAGADCNNFSVAAMYEILCQDGSVPNDGAWSKIWKLCVPERLMVFIGEIIGQWGVIDYGCGATKSCMKRSFRGHIIQACFEVNWMETTKYRCGRVVKLNTDGACKDDRIAGCGGIIRDSEGHWIGGFAKSLGKCTSYVAELWGIFEGLKYACKLGYNVVELNVDSMVVKQALNSGLTGNLSGQALVKNIRRLLDLTWEVTVKHSYREANACADALANIGCSLDYNIVFYDAPPMHIKHLLEDDAMGITTPRLIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2K3</accession>
    <name>A0A392M2K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002372">
        <property type="protein sequence ID" value="MCH81496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11852" checksum="EE211D99B94CFB43" modified="2018-12-05" version="1" fragment="single">MYYGYGGVLGRKERERVRNEEYTKCKQTPQDWYSYNDNRLQQVTDVPGPNTMRRRFGLLVIGMFHSYSLKSENCSYYESCSTQKAWMIEQEHNKVIIHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2V5</accession>
    <name>A0A392M2V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LRR and NB-ARC domain disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002504">
        <property type="protein sequence ID" value="MCH81596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF57">
        <property type="entry name" value="OS02G0478300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="2">
        <location>
            <begin position="2"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="39219" checksum="EBD1165086081CBE" modified="2018-12-05" version="1">MLKVLAFEPAGRHEVPEDLGSLIHLKYFSFTIVSREGTVIPKSIGMLENLETLDLTRTLIFDLPREICKLRKLRHFLGDAISLNQLKDGIGGMASLQTLRRVYLHGNEDEYDDKVVELIEELGKLNQLKELDLFLYGVFKRKYMSVISSSISKMQQMEKLYITCGVIDFHLNLPKLRYLVLDGELEKLPEWIPNLHYLVKLKLIYSKITYDTIQLLKSMPNLLSISLRKDAYVGETLHFQNEWFKNLKELYLHDLKNLKYIVIEQGALPSLKKLHISSDSVSAFQLKTIPTGIQHLKKLENLSICYVSEEFRQNLSLNGGTDHWIFKQVPFVDIRPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4E6</accession>
    <name>A0A392M4E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002997">
        <property type="protein sequence ID" value="MCH81943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8196" checksum="1F894AEE914D7C3B" modified="2018-12-05" version="1">MLPKGTTFPSASGEVNNMAGEQDAMPAVLKVNLRHTWAKMKTQSDKRRFNVHFQVGSTNSGSGPQTYLVKLQKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4S9</accession>
    <name>A0A392M4S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol 345-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003139</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003535">
        <property type="protein sequence ID" value="MCH82336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016314">
        <property type="term" value="F:phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051281">
        <property type="entry name" value="Dual-spec_lipid-protein_phosph"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12305">
        <property type="entry name" value="PHOSPHATASE WITH HOMOLOGY TO TENSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12305:SF96">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="264" mass="28818" checksum="09C59C1AC08F4874" modified="2018-12-05" version="1" fragment="single">MDTAPGDASNPPPLKIPSTAPPAKEDDGQDSAAVVSGQDNTAREAPSRLSPTGISSWAKNLKLSQSFSGNQDDSSSENVGKSTFARFTSNLGLRLSPKSPVVDDSSNEPAAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKQTCLLLYMLQFLPPSLPFWMSTGRGREVLPHSPFQPSKILPIPVAIPRFGENFHPSPWIPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5P2</accession>
    <name>A0A392M5P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF247 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003872">
        <property type="protein sequence ID" value="MCH82569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5P2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004158">
        <property type="entry name" value="DUF247_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31549:SF191">
        <property type="entry name" value="DUF247 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31549">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03140">
        <property type="entry name" value="DUF247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21762" checksum="B18DB5D1DEE4CE61" modified="2018-12-05" version="1">MNQGQKKENTEITFRNIKDLRAAGIKLKSSGTRSPLDIAFFEGWFAAKLTVPEIIVNGSTTAILFNLTAYEMCPDFENDYGISSFAIFMDSLIDHPEDVKELRSKGVLLNCLGSDEEVANLFNIISTDIVLDVERYEKVRNKINKHYRNKYKTLDSAGYCHLFQQSLDLYCLPSCLYRTYSHFCSNIVYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M641</accession>
    <name>A0A392M641_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine protein kinase SRPK1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003710</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004352">
        <property type="protein sequence ID" value="MCH82897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676:SF27">
        <property type="entry name" value="ASPARTYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676">
        <property type="entry name" value="DUF4219 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="564" mass="64483" checksum="3ECA6D0EDD9D3232" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6G1</accession>
    <name>A0A392M6G1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003641</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004245">
        <property type="protein sequence ID" value="MCH82829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6G1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16623" checksum="A5A37BD068B80EA8" modified="2018-12-05" version="1" fragment="single">AWTIGSNFSVGASYSTSRNQCARISEFHFARQNDDGIRDWSNELRVEPRRRSGRPTSRWLKEEGSSSGVFDGRRNPGTEFSAGRNTVDPTRPSSQSMHSNTNPQNAITVTSVSANRNEIIPEINVLAARPAGTNDCSQLELPGVERPECNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6L2</accession>
    <name>A0A392M6L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003907</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004640">
        <property type="protein sequence ID" value="MCH83092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006527">
        <property type="entry name" value="F-box-assoc_dom_typ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017451">
        <property type="entry name" value="F-box-assoc_interact_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01640">
        <property type="entry name" value="F_box_assoc_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07734">
        <property type="entry name" value="FBA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box associated beta-propeller type 1" evidence="1">
        <location>
            <begin position="138"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="409" mass="47077" checksum="02A07EA7C5CFFE9E" modified="2018-12-05" version="1">MEESLTVTNLQVSNHIPDDIVLYILSKLPLKSFKRFECVRKSWSLLFDDPYFITIYRNYFLSKDSSCYDHTCLLVGVKEGTEYYSRMGGVLVDDLYSLSGENFENSVKLDWPKPFPENEYLVPNEHYSGFGILGSASVNGILCLCAFHDTEWKLILWNSTTTEFKVIPSSPFELGEDATPHRHLLGYDRIEDDYKVIRFIECDVVYDEYGDANDDDGFVSFWEIYSLNDNLWGKIDDHISLFSDNKDVYMDGVSHWWHKSETHTYLVSFDFSDESFTTTPIPFYIDDSFPVLRKDLLILNGSIAFIINYKKTSTIHILILGELGVKESWTKLLVVGPSPCLNYPIVVAKKGKILFRNRDRNQYKQGLVWFDLSTGMIDMIDLTTQISGRVSSRILFHKESILPIGGICN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M712</accession>
    <name>A0A392M712_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WRKY transcription factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004888">
        <property type="protein sequence ID" value="MCH83262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M712"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6617" checksum="6DFB9657D3C04C01" modified="2018-12-05" version="1">MDDEEGDEFGSLDDVDLTGDFFENLDELNQLAGSGDCFIDPFSSAIAIPNWVANSAAATAAGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M727</accession>
    <name>A0A392M727_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004809">
        <property type="protein sequence ID" value="MCH83206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M727"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10839" checksum="9752BEB1EB456D49" modified="2018-12-05" version="1">MTAMKLQEDAQAQASNPSENWDQNHNREGSMEDTLQRHRYRRQTPKVVQEEVQVHMELGNKAEAQTTTKRPRLEASNTNNADTIMAGPAKHASQAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7N8</accession>
    <name>A0A392M7N8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cysteine-rich repeat secretory protein 60-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0003600</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell junction</location>
            <location evidence="7">Plasmodesma</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the cysteine-rich repeat secretory protein family. Plasmodesmata-located proteins (PDLD) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004190">
        <property type="protein sequence ID" value="MCH82788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd23509">
        <property type="entry name" value="Gnk2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.430.20">
        <property type="entry name" value="Gnk2 domain, C-X8-C-X2-C motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051378">
        <property type="entry name" value="Cell2Cell_Antifungal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002902">
        <property type="entry name" value="GNK2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038408">
        <property type="entry name" value="GNK2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32080">
        <property type="entry name" value="ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32080:SF3">
        <property type="entry name" value="PLASMODESMATA-LOCATED PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01657">
        <property type="entry name" value="Stress-antifung"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51473">
        <property type="entry name" value="GNK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0965">Cell junction</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="2" id="KW-0945">Host-virus interaction</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Gnk2-homologous" evidence="9">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00038393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH82788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="14819" checksum="A695FDFB41F44BDB" modified="2018-12-05" version="1" fragment="single">DKTIVLKKCGPYVGYDTGTRDAVLSRLTGSGGGYFRVGGSGQLKGMAQCIGDMSFVECEDCVSEAIRRLRSDCPAADFGDMFLGKCYARYSTGGGGGAHSXSKAHGCIVRENPSLIPDGNNSWSDFTYKALQMGTNLGQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9Z5</accession>
    <name>A0A392M9Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006620">
        <property type="protein sequence ID" value="MCH84310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="129"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="398" mass="45077" checksum="1DD80B43F6796350" modified="2018-12-05" version="1" fragment="single">MHCSNQLQRSRLIWLKKDDANSKFFHGLMSSRRRVNALSYVVVNNVVVEGVHGIREAMFNHFENHFRSFNSISGEDAYHLERLFDEEKVKQAVWECDSLKSPGPDGVNFGFIKEFWADVKGDFMRFLLEFYANSRLVKGSNCTFIVLIPKAKSVIDKVISETQSTFIKGRQILDGILIANEAVDDVKKRKKELLLFKVDFEKAYDSVEWDYLDSVMGKMGFSEKWRRWIMTCVSSATASVLVNGSPTNEFKLGRGLRQGDPLPPFLFLIAAEGLNVMLKASVPVGLYKGYQVGSDVSTTTRISHLQFADDTLIVGEKSWANIRVLKANFILFELISGLKVNFHKSLLVGVNISEAWLVDAARVLNCKLGRIPFLYPGLPIGGDERHLSFWSGLWIKFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAD6</accession>
    <name>A0A392MAD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lin-54-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006863">
        <property type="protein sequence ID" value="MCH84470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7743" checksum="969F399909F18A26" modified="2018-12-05" version="1">MKTKCSSLARSELEIQKDPIIKSTESASTEAAHQQGLGATSNGAANVVGNTTISTSLAPSSLVSENGEIKXKVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAJ6</accession>
    <name>A0A392MAJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005004</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006378">
        <property type="protein sequence ID" value="MCH84173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14364" checksum="698C3EEFAC2B0ABF" modified="2018-12-05" version="1">MSEAISVLSVMSLPWMKALWLGLITSGRICFIRLARVLVIILRVTLHREIGLKSLGGGFDFGNKAYVGGVYLAGIPIVVKNIQSHPVDIFPYDIPVIMVEESWEAIWPRGCKGFHVFNGLENLILGKALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAR1</accession>
    <name>A0A392MAR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SCY1-like protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006469">
        <property type="protein sequence ID" value="MCH84219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051177">
        <property type="entry name" value="CIK-Related_Protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12984:SF6">
        <property type="entry name" value="SCY1-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12984">
        <property type="entry name" value="SCY1-RELATED S/T PROTEIN KINASE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="127"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="360"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="150"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="277"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="388"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="411" mass="43309" checksum="EE9F97D3A200CF67" modified="2018-12-05" version="1" fragment="single">VRVNALLCLGDMVNRLDKHAVVEILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLVPLLTAQQLNVQQFAKYMLFVKNMLQKIEEKRGVAVTDSGIPDVRLSSAVNGLQVEAPRTSNSTVAASTKSSSWDADWGPKTTGTANSVKNSIDTSSQSVTGNPVGQVTSLQNNLSLSGASNQQTAKSCPSVDLEWPPRASSGVTSQFGDTERQTVAAGTSSTSNLEDDDPFADWPPRPSGSLSGGSGNSNNGTIGMALNKMGHNSMTSNSSNLGLQSSNNWSVNSQNSVESIGMNPRNSSSSIGNPNNGFEPQSSLGFLKQSQAFPAPNVVSSSSYNNNVKSTDLGSIFSSNKNEQIAPRLAPPPSTTVGRGRGRGRGATSTKQPSHTKSNSDQPPLLDLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAU9</accession>
    <name>A0A392MAU9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cullin-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006554">
        <property type="protein sequence ID" value="MCH84273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="463" mass="52558" checksum="8322CC0533F89C20" modified="2018-12-05" version="1" fragment="single">MAASSSNPVQPQIQQDVVSSIIKKGEELKPAGKYMNFPKEKLFLLEDKPVEFDNFKANGFDIEPLIIAQGWKKYFDLLNGPIYSGFVKEFWYKSYAFDSEYCKDQEKLMIKVNPGLKGQTRDQMGLETHIEDEIRSNFSGVHFVIKREHIAKLLGLQDKGARLHEYGKNGVKSLRNSVTAEIMKDGTYDGDAEARMTDKCRVIYRIMLNSIVPRKGGTNSIPWHYKHAIYFLMQGRKINLVDFLFRNMCSVMTTCIKHQHPNIAYPRLLSELFLQSGLVEGLRPVYPSLFREYFSEPLTAKILDPMDINKNFIAPETYKERVIRTRLYNNGFPVISQADLIEVQQFFVDDVNKETGANLTLNDVPPAPVLSMPKRGKRKTKDDVVEKKVLKKASSTSAAAVKTVQAKALNEEEYNRAIGITVEKFGTVSERRSKNKHDDAVKAGEGKEVIKGSGKGLLLRTNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCV8</accession>
    <name>A0A392MCV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Potassium channel AKT1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0004935</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006272">
        <property type="protein sequence ID" value="MCH84104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034702">
        <property type="term" value="C:monoatomic ion channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005249">
        <property type="term" value="F:voltage-gated potassium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045319">
        <property type="entry name" value="KAT/AKT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45743:SF22">
        <property type="entry name" value="POTASSIUM CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45743">
        <property type="entry name" value="POTASSIUM CHANNEL AKT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="cAMP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="6 9" id="KW-0407">Ion channel</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0630">Potassium</keyword>
    <keyword evidence="3" id="KW-0631">Potassium channel</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <keyword evidence="4" id="KW-0851">Voltage-gated channel</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="8">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="7">
        <location>
            <begin position="125"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="7">
        <location>
            <begin position="158"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="7">
        <location>
            <begin position="223"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH84104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="358" mass="39843" checksum="BC139A648C2E1167" modified="2018-12-05" version="1" fragment="single">AFREVRQFEVFGEIGVLCYRPQLYTARTKLLSQILRLSRTSFLNLVHNNVEDGTIIMNNFLKHVHTLSLTYPSMVGFMAEVETLLSTGKMDLPISLVFAAEKDDDMLLHQLLKKGSDPNEIDHKNGKTPLHVAAFKGSDHCVVLLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIENGADISSANVTPLAIFAIEKNDIQLLKDIMKLGGDIVTNFTKEGTTALHAAVCEGNVQIVKFLVEQGADIDKHDKAGWTPRNLADHQCHEEIQNMFKEIPHVIPQMPNNNGGSNIPKSYSEPSMLAMSRGGSFRPNQELTCLNGHQKRRVGSFRNSFFGMVTSAKRGKYIYAFNCNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="32" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD14</accession>
    <name>A0A392MD14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006238</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008427">
        <property type="protein sequence ID" value="MCH85392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33471">
        <property type="entry name" value="ATP-DEPENDENT ZINC METALLOPROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33471:SF7">
        <property type="entry name" value="ATP-DEPENDENT ZINC METALLOPROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="FtsH protease domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14812" checksum="29E2DCF2B3F1CD22" modified="2018-12-05" version="1" fragment="single">AYLLGLPIFGYSLDIGKEHVNLIDERLEKLLYSGQLDTKELDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKAIHEALMASMANKASVLECIQTIESAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDH2</accession>
    <name>A0A392MDH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006399</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008733">
        <property type="protein sequence ID" value="MCH85552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="247"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="199"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="199"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="226"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30567" checksum="8D7D4C2B8403F60A" modified="2018-12-05" version="1" fragment="single">MAENSLTSHTFVPKFDGFYDHWAELMENLLQSKEIWSSIDPGVTVAPENATAEQVEAARVSKLQDLKVKSYLFQAIDRTILETILTRNTSKEIWDAMKQKYQGSTKVKRAQLQALRRDFEVLAMKEDETVDEYFSRTLAIANKMTSHGERMEQVTVVEKILISMTEKFNYVVCSIEESNDVTTLSIDELQSSLMVHEQRMKAHQHHSEEQALKVSNNGRGGNSSRGRGRFNSRGRGRGKQNKETVECFKCHKLGHYRNECPDWEDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDM1</accession>
    <name>A0A392MDM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006059</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008094">
        <property type="protein sequence ID" value="MCH85215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF560">
        <property type="entry name" value="RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="TIR" evidence="4">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="405" mass="45961" checksum="E2F093A3347CC21F" modified="2018-12-05" version="1" fragment="single">AGIRTFLDDKELRKGEELGPALKKAIEESHIAIVVLSENYTESSWCVEELVHIMECYDTYGNNEDLLSKWRPALTQVANLSGWDANNFGRTETELVTRIVEDILTKLDTSFLSITDYPIGLESRVRHITKFIDGQSHKVCMIGIWGMGGSGKTTTAKAIYNQIHRQFKGKTSYIESIRKVCDNNSRGIIQLQQQLLLDLLKEKKEIHSIALGINYIAKRLRGQKAFVVLDDVTKYEQLQALCRNPKLLDVVAYCGGLPLALEVLGCYLSKRPEEEWRSVLSKLEKIPNDQVLEKLRISYDGLKDHMEKDIFLDICCFFIGKNRADVTQILNGCGLHADIGIAVLIERGLVKVEKNNKLQMHDLLRDMGREIVRESSPNKAANQSRLWRYEDVLHVLSKETAAISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEE1</accession>
    <name>A0A392MEE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007964">
        <property type="protein sequence ID" value="MCH85138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="55"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="27617" checksum="16FD9F7FE5DDE4EF" modified="2018-12-05" version="1" fragment="single">MDRGSMTKPFTVDEVKAAVWDCGSFKSPGPDGINLGFFKDFWTELQGDVMQFISEFHRNGRLTKGLNSTFIALISKVDSPQRLNDFRPISLVGSLYKILAKVLANRLRLVIGSVISESQTAFVKDRQILDGILIANEVVDEARKSKKELMLFKVDFEKAYDSVDWDYLDVVMGRMSFPTLWKKWIKECVCSATASVLVNGSPTDEFPLERGLRQWDPLSPFLFLLAAEGLNVLMKAMVENNLFTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEM2</accession>
    <name>A0A392MEM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lysine-tRNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006778</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009408">
        <property type="protein sequence ID" value="MCH85926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42918:SF9">
        <property type="entry name" value="LYSINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42918">
        <property type="entry name" value="LYSYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="4">
        <location>
            <begin position="40"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9086" checksum="EB8D7FB999D91CDA" modified="2018-12-05" version="1" fragment="single">RFADQLVQRQRFADQLKLKDGQSDDDDVTIDIDKTFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPTMKPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF73</accession>
    <name>A0A392MF73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009850">
        <property type="protein sequence ID" value="MCH86167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="370"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="388"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="417"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="435"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="445"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="506" mass="57672" checksum="D852F74D01F8D24F" modified="2018-12-05" version="1" fragment="single">MESASTSYSSIPVVFSKLPINTNTGKHFAKNVTIKIPYEKLDLVLEQPVDFESLRANGFDVKKLFQDQGWLGYFDILNGPVYTQLVKDFWKRCDIITQEEADKEYNLKVAEDPKKNKGKTRTELGLREFTETEIRSGCTGYEVVITQLTIAELLRIPNKGIFKTFTPTSDKRSDYLERIAERCYIKGDVEPTNKVSDMKPTQRLLVRIMFGSFFPRVGGTDQVSWDHRHFIYFLTAGRKMNLAAYIFHHLCKSIMTTQNPTRKTPQVAYPRLLSELFFQCGIIKRIEYAQVPDLLEEERAKFINGYTLANMSMLKEAIKVPNHPLLMKKPSGSVPETSAMLFDNESKDVVFEYIRLMKEEGLIVSKSDIAPAPTEDRKGKRVAASGSGKEKAKVVVKEKEKRKRTGTSVSDKENVSKKQRTQKKTTRXVRRXVINEEDDEETDEEPLKSKRKISEPEAKEMNAEADTGISHSNKDDISNSQAQNLPETDLDPALLQPLNIAYPPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFR8</accession>
    <name>A0A392MFR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Patatin-like phospholipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008807">
        <property type="protein sequence ID" value="MCH85598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047372">
        <property type="term" value="F:monoacylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004620">
        <property type="term" value="F:phospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32176:SF33">
        <property type="entry name" value="PATATIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32176">
        <property type="entry name" value="XYLOSE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17109" checksum="1B0A10F984083409" modified="2018-12-05" version="1" fragment="single">MAALVAVSEVVQELNEKIPQFIHVNPNEPIKLVLLSLGCGRTKTQGIDARIAQFFSFNDWIPLIVVGLTTAAADKSEYHLASVFPDLPSSENYYLRVEEYNLDPSIGALNATKENMEKLVEAGQDLLEQTVKIQNVTSFVPYEKPSEGTNAEALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGR4</accession>
    <name>A0A392MGR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009433">
        <property type="protein sequence ID" value="MCH85938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16689" checksum="966253AA56B1B378" modified="2018-12-05" version="1">MSLVYNRGYLCGCEFVTAVGKREMSCYYRMVRHTLRGDHVLAEWQLVEMVAACDGVFRTCSXXXXXXXXXXXXXXGLPIWLEILWVAVDLVGDLVKEGFVEEGCGYWSYLTVQNPSHFPYSQPPLASFVATSSTFILLAVRGSIPYSTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGZ6</accession>
    <name>A0A392MGZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0006360</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008646">
        <property type="protein sequence ID" value="MCH85514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="262"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH85514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="482" mass="56112" checksum="1D124A9AAED29FB0" modified="2018-12-05" version="1">MRLGGVLMQKGKVVAYASRQLKTHEKNYPTHDLELAAVVFTLKMWRHYLYGSRFEVFSDHQSLKYLFDQKELNMRQRRWLEFLKDYDFKLSYHPGKANVVADVLSRKSLHMSSLMAKELELIEEFRDLSLVCEVTPKSVRLGMLKLTNPFLEEIKECQKTNKKLVENLEFIKEGKEIDFGVDENGIIRYRGRICVPDVPELKKMIMEEGHQSGLSIHPGVTKMYQDLKKLFWWPGMKRQISEFVYACLVCQKSKVEHQKPSGLLQPLFVPEWKWDIIAMDFVGGLPKTAKGNEVIWVIVDRLTKSAHFLAIKTCTLVPKLAEIYIEQIVRLHGIPSSIISDRDPQFTSRFWESLQEALGTKLRLSSAYHPQTDGQSERTIQSLEDLLRACVLEQSISWDSCLPLIEFTYNNSFHSSIGMTPFESLYGRRCRTPLCWYESGENMILGPKIVQETTEKIKMIREKMKVSQSRQKSYHDKRKKDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH62</accession>
    <name>A0A392MH62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc transport protein ZntB-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007391</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010472">
        <property type="protein sequence ID" value="MCH86533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47468">
        <property type="entry name" value="OS08G0130000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47468:SF1">
        <property type="entry name" value="OS08G0130000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16905" checksum="722368E7CCA5B4F5" modified="2018-12-05" version="1">MNNDGVAVSIISVPVIAHGEQVYLRVKEKSSSKRWFASEDINSLEELIGRLRRLKENVGFIVNRVTAIQASLDSWQSEQINRKLYYLSFLSIIFLPLSIITGALYTRIVTGWREKRTLGKNWSLNRKSLLRRPLRIDDAARGGYLRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHB8</accession>
    <name>A0A392MHB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006472</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008852">
        <property type="protein sequence ID" value="MCH85624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46922">
        <property type="entry name" value="DHHA1 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46922:SF3">
        <property type="entry name" value="HEAT SHOCK PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7767" checksum="8C1FC558723C65C3" modified="2018-12-05" version="1">MLELSVEGLIAKGNSSISARRNAASKLLEKVFRVRLGRGFYGECLGVRADGNSNLSDEIGMLLSVKSAAIGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHP1</accession>
    <name>A0A392MHP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007691</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011021">
        <property type="protein sequence ID" value="MCH86831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="157"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="33"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="47"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="376" mass="44169" checksum="D1737488734CC1A4" modified="2018-12-05" version="1" fragment="single">TKELLFTPDPEKIIRENRNARKLALQQSQQTHKPWDPRPMGDDQMKGNAQSTNPNTNDTRRNVFTGMQGNKECGASPWDPIYQFFEECKKERGPVDVELRYRQNIVVAELAQKILRSEIEQCEEVASKLKKPSQVEGLLIKIAHSFVEDINKIRIAALDQDAKIKSLEHQVEQLTNLIETLEERAKRNDKEECASLDSKLKRWIGKFRKVKPKQTTKREKCFRIQLREQGIVEPPVRVTAPIFDQPDVGEDTIEAFQTARTLTRWQDKQKLRMKNMLWGRKRSTGHKRAGKNTKLTYIIQMKSRIREKHQKRIVRGYMNSRAWSLLIKERTEWCRYCADGNYAKCKRKGVEGETQGDDKRTYPPQWRGKCFKLMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ56</accession>
    <name>A0A392MJ56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0008407</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012396">
        <property type="protein sequence ID" value="MCH87536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004713">
        <property type="term" value="F:protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:002517">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000433">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051824">
        <property type="entry name" value="LRR_Rcpt-Like_S/T_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006:SF50">
        <property type="entry name" value="OS03G0724300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017236288" evidence="3">
        <location>
            <begin position="19"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="64"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH87536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="25983" checksum="3B29B03416597C52" modified="2018-12-05" version="1" fragment="single">ALLALLLVLLLLYTRKRGNSSPRGNGVGPAPAGGSPPPPGVSVNLANAGDSFTYHQLLQATGDFNDANLIKHGHTGDLFNGVLENGIPVVIKRIDMRSTKKDAYLLELDFFNKVSHQRFVPLLGHCLENENEKFLVYKHMPKGDLSNCLFFKNTTSEDGTLQSLDWITRLKIATGAAEAISYLHHECIPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDTHQSKITRFLRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJC7</accession>
    <name>A0A392MJC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010196">
        <property type="protein sequence ID" value="MCH86364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052586">
        <property type="entry name" value="ASCC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494:SF2">
        <property type="entry name" value="NUCLEIC ACID BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="28773" checksum="9F43DD81B92B9DB2" modified="2018-12-05" version="1" fragment="single">MIGILFCSKWNFYNVTGCMSVQRIVADLIPRYACHCPKALEAATKVVINMHNWSLALISKEEDSSGIAFETAKACIFGLADICCIASSVAPTSAVIRGIRLAVFQNVLTFFVALFEGKDVSKMIDKNFLNMQDNPEVFSELKQKVLDEDDSSLTKLSKFHTLCILWVFFSCPKELLAACLELLRSATNEGTSNEGQRFMSMVTSLLNDDESVHPLGRENDGPKSCTASIGQGIKEIEVGEKVITDDNHISDGIRKSCLLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJL3</accession>
    <name>A0A392MJL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010317">
        <property type="protein sequence ID" value="MCH86444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="504" mass="57256" checksum="69D453E8CA460E92" modified="2018-12-05" version="1" fragment="single">FRHRARKRLTDEEYREGILEVKTDPNNLKKLEDSFVGSLWESVEAENIQVTLWMEGYQHIKATTLGLDLILLTTTEVGGVEKAYADNKGWWEKWFSSIKPWRPDILPKGRRVWVRLFGVPLHIWGWEGFNRIVWCFGKLRNLDPETKNQSRFDVARVQLDVTTWSMLDEEIEIKVDEEIFIVRMVEERSGGSDMXWKTDGRKTSPTAKVLSTEDFRLGSEIALGDGDHGESAEVGLVNVVSVHDEEEQSRVVVVDLDCHVEEKELHDEALSRDLVVINSGPTIDVLDGGLVLEEYYGPAQQNTKGKEVIVWNDKXGPNASSEEYQEVQILKDREVSLLEQSYEMGLKVNKKRITKEVGCKNWPPFFGPNKWASLANTNKGQKGAKKKKGRKTKANVSKRRLEVTQEDPIQNFDSDSVEEGGDLTVQKMIPVSNIQVVLNEGELCSVIEGTNRQVRIEAERLFYIGLNLGVTSNEERMQTLKRMVNLEGNDIQNNVSSGGEEGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJP7</accession>
    <name>A0A392MJP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Protein COBRA-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0008454</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the COBRA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012485">
        <property type="protein sequence ID" value="MCH87581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010215">
        <property type="term" value="P:cellulose microfibril organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052324">
        <property type="term" value="P:plant-type cell wall cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056900">
        <property type="entry name" value="COB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006918">
        <property type="entry name" value="COBRA_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31673:SF65">
        <property type="entry name" value="COBRA-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31673">
        <property type="entry name" value="PROTEIN COBRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25079">
        <property type="entry name" value="COB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="COBRA C-terminal" evidence="7">
        <location>
            <begin position="5"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF25079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH87581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11482" checksum="9906311AEF4769AE" modified="2018-12-05" version="1">MFLLTDDTAMLWGVKFYNDFLMQAGPNGNVQSELLFRKDDSFMFDKGWGFPRRIYFNGDNCVMPPPDAYPWLPNAGLKNEVSYLTLMMASLVVLVLHAYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJZ0</accession>
    <name>A0A392MJZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cysteine proteinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0008548</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012690">
        <property type="protein sequence ID" value="MCH87671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02248">
        <property type="entry name" value="Peptidase_C1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.10:FF:000067">
        <property type="entry name" value="Senescence-specific cysteine protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025661">
        <property type="entry name" value="Pept_asp_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000169">
        <property type="entry name" value="Pept_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025660">
        <property type="entry name" value="Pept_his_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013128">
        <property type="entry name" value="Peptidase_C1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039417">
        <property type="entry name" value="Peptidase_C1A_papain-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013201">
        <property type="entry name" value="Prot_inhib_I29"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12411">
        <property type="entry name" value="CYSTEINE PROTEASE FAMILY C1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08246">
        <property type="entry name" value="Inhibitor_I29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00705">
        <property type="entry name" value="PAPAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00848">
        <property type="entry name" value="Inhibitor_I29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00645">
        <property type="entry name" value="Pept_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00640">
        <property type="entry name" value="THIOL_PROTEASE_ASN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00139">
        <property type="entry name" value="THIOL_PROTEASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00639">
        <property type="entry name" value="THIOL_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0788">Thiol protease</keyword>
    <feature type="domain" description="Cathepsin propeptide inhibitor" evidence="9">
        <location>
            <begin position="20"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase C1A papain C-terminal" evidence="8">
        <location>
            <begin position="101"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH87671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="305" mass="34473" checksum="32A8FA26420D8C14" modified="2018-12-05" version="1" fragment="single">AFPAMNTKVSTDPKVMKKRYETWLKRHGRHYGNREEWEVRFDIYQSNVQFIEFHNSQNHSYKLTDNKFADRTNEEFKNSYLGFLPRLRAQTNFTYHKHGDLPKSVDWRKKSVVTHVKDQGRCGSCWAFSAVAAVEGIHKIKTGKLVSLSEQQLIDCDTKRGNKGCEGGDMYIAFNYIKKHGGLATAKEYPLTGTSGNCNKAKAKSNAVTISGYEKVPARNEKMLKAAVAHQPVSVATDAGSYAFQFYSKGVFSGSCGKDLNHAMTIVGYGEENGEKYWLVKNSWANDWGESGYVKMKRDTKDKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK11</accession>
    <name>A0A392MK11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012107">
        <property type="protein sequence ID" value="MCH87389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10768" checksum="D5DEDE629CA763B3" modified="2018-12-05" version="1">MRGASTRHEPTSTVDLGVEQARRPTTLARTTRLKLVSILGWVLLVEESGNPESNNLDHSVRLDDDIPTWHFESGLQSQNMSRPILNNSPDCTTGENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML97</accession>
    <name>A0A392ML97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mitochondrial-like transcription termination factor family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the mTERF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013878">
        <property type="protein sequence ID" value="MCH88286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032502">
        <property type="term" value="P:developmental process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.70.10:FF:000006">
        <property type="entry name" value="Transcription termination factor MTERF9, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.70.10">
        <property type="entry name" value="Transcription termination factor 3, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003690">
        <property type="entry name" value="MTERF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038538">
        <property type="entry name" value="MTERF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13068">
        <property type="entry name" value="CGI-12 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13068:SF151">
        <property type="entry name" value="TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02536">
        <property type="entry name" value="mTERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00733">
        <property type="entry name" value="Mterf"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0806">Transcription termination</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="29334" checksum="33F7B3AE0EE1DB0A" modified="2018-12-05" version="1" fragment="single">MSSFQINVYSAQERIDYLLSLGVKHTDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSSKLGQIIASTPSIFSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRFMFLTKELGAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVKSLTKYPMYLSLSLEQRIRPRHAFLVSLKKAPKGPFPLGSLVPTDEAFCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLC5</accession>
    <name>A0A392MLC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription initiation factor TFIID subunit 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009200</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013918">
        <property type="protein sequence ID" value="MCH88316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005669">
        <property type="term" value="C:transcription factor TFIID complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016251">
        <property type="term" value="F:RNA polymerase II general transcription initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051123">
        <property type="term" value="P:RNA polymerase II preinitiation complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003162">
        <property type="entry name" value="TFIID-31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051431">
        <property type="entry name" value="TFIID_subunit_9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48068">
        <property type="entry name" value="TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48068:SF4">
        <property type="entry name" value="TATA-BOX BINDING PROTEIN ASSOCIATED FACTOR 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02291">
        <property type="entry name" value="TFIID-31kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="59"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="69"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11199" checksum="CDEA16571E1D222E" modified="2018-12-05" version="1">MLNVITLQVLLELAHNRNKIPLPKTIAGPGFPLPPDQDTLMCPNYQFAIPNKRLAESIEETEDEEAVNPNPSQEEQTDMQLNLHHERVSFPLTKRQKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLG2</accession>
    <name>A0A392MLG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative polygalacturonase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013962">
        <property type="protein sequence ID" value="MCH88330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="40534" checksum="0973C12627A2B7C3" modified="2018-12-05" version="1" fragment="single">MYFIYHDDNQGRGEFAAEHIVVFSLCDWDCSSREGPRNSTVGRKLKVFLVVIHYLHCAVNVVMKPVLWMIGNYGARVGKHYDPYALPEFEYFDYRGLVPEEKTMAARVVVGVSNYYFIIIGTLHTNINREAKAKWHPCIIFQNYHVSKEYFPIFGDLCEFGDIQVEDKRMKSVEQSNYICETVFAARLFEGSLCIYKQWNPGDNYSIFNYYCTKRILMQIAAKVVLLVIKFLEIGKGYANSNALMFATTILKSSAMVISWDPGKFNTFMTGVAYQCCLRNSLSIYDLLNLVFDRGKIWLKSILVLLLLVYDRGKFWSSMHLGVQVMTDLTVFHGLIPMCFSSELKGHLAARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM08</accession>
    <name>A0A392MM08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013327">
        <property type="protein sequence ID" value="MCH88009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11675" checksum="99DC6AED514C27CB" modified="2018-12-05" version="1" fragment="single">PTEPTQRPRCKKVGRVEYRRSPVCSDGHVLFTNMKLQNDNDVKIMFSIFSQYNMKGLIELDTTSVIFVQDICSSLIHPRTFDEIVACIVEPENDELVDLSDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN42</accession>
    <name>A0A392MN42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta-hydrolases superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012756">
        <property type="protein sequence ID" value="MCH87704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080120">
        <property type="term" value="P:CAAX-box protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1/LyrA-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43592:SF20">
        <property type="entry name" value="ALPHA_BETA-HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43592">
        <property type="entry name" value="CAAX AMINO TERMINAL PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CAAX prenyl protease 2/Lysostaphin resistance protein A-like" evidence="1">
        <location>
            <begin position="42"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10028" checksum="AB08A1BA8DA851F0" modified="2018-12-05" version="1" fragment="single">MFIFSIHAVNAFLGCASFAWPHIPPSLDVITWLKVCGQMSLLIVQGTVMASVISLVEELLFRSWLPQEIEVDLGYHYGILISGLAFSFLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP48</accession>
    <name>A0A392MP48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015877">
        <property type="protein sequence ID" value="MCH89306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="239"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="332" mass="37983" checksum="0EBFD54510A8E9CE" modified="2018-12-05" version="1" fragment="single">MGVRHVLGTGNYLGLPSMIGRKKKDVFAYLKDRIWKRINSWRGRALSRAGKEVMIKSVLQAISSYVMSIYLLPDSTIKDIERMTNSFWWGGGANNKGIRWLAWDRMTHPKDQGGMGFRDFRSFNLAMLAKQGWNIMTKPHTLMAKLFKARWSVGNGTSIKVMTDPWLRDTNGAWFPSPQVQGVHNFTVNELLIPNMKVWDKAKIESIFPLHVAKSILEIPLFDMNEDKLLWIDSTNGQYSVKSGYKLLLNVTGTTDDVTQQEDWHSLWKILAPPKAKHLLWRICKGCLPTRMRLQERHVFCPLSCPLCDQASEDDWHLLFACATSSQALQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP93</accession>
    <name>A0A392MP93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lycopene beta/epsilon cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009347</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014220">
        <property type="protein sequence ID" value="MCH88458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32098">
        <property type="entry name" value="LYCOPENE BETA/EPSILON CYCLASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32098:SF5">
        <property type="entry name" value="LYCOPENE BETA_EPSILON CYCLASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15560" checksum="6B717DDC970D4214" modified="2018-12-05" version="1" fragment="single">MNMLGHELLELIEVGVLEEDDIERVMSAKFNPNRCGFERKGDIWIRRGRKPDGVCLVVGTGTRGFENNSISDVIFSSSTVKKVGDSKAQYFWEAFPAGSDPLDRTTYMFTYVEPQPGSPKLEELLAEYWNLMPEYQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPP7</accession>
    <name>A0A392MPP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009822</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015131">
        <property type="protein sequence ID" value="MCH88929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5368" checksum="03ED1746D6EE6204" modified="2018-12-05" version="1">MKLIKVPKAPKDYDVLSIPLTAAALRVLTARKGTPDEWRQYLSSSIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPU2</accession>
    <name>A0A392MPU2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015232">
        <property type="protein sequence ID" value="MCH88989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="81" mass="8927" checksum="675EC57BAF368739" modified="2018-12-05" version="1">MPHATPSVPQASFEFENEEPEEVHTDDEVVKVTPPTATKGPSTRIHKYHPPDAIIGQLDRGHMVKHVAQQMQTGIEMSTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRU9</accession>
    <name>A0A392MRU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Oligopeptide transporter OPT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0011151</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the oligopeptide OPT transporter (TC 2.A.67.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017903">
        <property type="protein sequence ID" value="MCH90240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035673">
        <property type="term" value="F:oligopeptide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004648">
        <property type="entry name" value="Oligpept_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004813">
        <property type="entry name" value="OPT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22601">
        <property type="entry name" value="ISP4 LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03169">
        <property type="entry name" value="OPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0571">Peptide transport</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH90240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="19560" checksum="1F76088C4A3DD8D4" modified="2018-12-05" version="1" fragment="single">GGDAYSIGAITIMKAYYKQSLSFLLALLIVLSTQILGYGWAGILRRYLVDPVEMWWPSNLAQVSLFRALHEKENKSKGFTRMQFFLIAMGLSFLYYALPGYLITVLTFFSWICYVWPHNITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVAPWASIVNVGVGFIMFIYIILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRX6</accession>
    <name>A0A392MRX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010908</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017389">
        <property type="protein sequence ID" value="MCH90002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010228">
        <property type="term" value="P:vegetative to reproductive phase transition of meristem"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040229">
        <property type="entry name" value="At3g27390-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31133:SF2">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31133">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11383" checksum="BFBBD48DE32A668F" modified="2018-12-05" version="1" fragment="single">MFMAGALIGPIAFAILAVGNSAVIIGLWTAHVIWTYYCVARTKRFGLVFKVVVLICLPVPLLLWPVVGIVGSFLGGIGYGFFAPLLATFEAVGENVEDKFYHCFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRY9</accession>
    <name>A0A392MRY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative structural constituent of cell wall protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011193</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017989">
        <property type="protein sequence ID" value="MCH90280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31805:SF16">
        <property type="entry name" value="FORMIN-LIKE PROTEIN (DUF1421)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31805">
        <property type="entry name" value="RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="172"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="208"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="242"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="29346" checksum="939EE5BA627292F1" modified="2018-12-05" version="1" fragment="single">MAKTSTFPATVINSPEGSLSQDVIATTVEKSMKACTANLMRFLEGISSRLSQLELYCYNLDKSIGEMRSELASDHEEADLKLKSLDKHMQEVHRSLQILRDKQELVETQKELAVLQLARKGSPSSSHSQSNEEKFYPPASIEQKRTDNASLTSSDPHNQQLALALSHQVAFQQPPIPPSSRASSPNVTQTTQQPPYYMLPAPSPNPPATSQLPQNQYFPTDPQYRYHHPPTSSQVTQSLTAQQFSQYQQPQQQQQQQQWPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSZ8</accession>
    <name>A0A392MSZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018200">
        <property type="protein sequence ID" value="MCH90392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.2250">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15224" checksum="90706B77096B9DBE" modified="2018-12-05" version="1">MPGGASISAASLIPVENEKDFAPPPKKLKGEEGNSSVPMPQDSYREAREAFKRWCQLFLVKEYPDKIEEEKRFKIFKDSLDRKVSPSISEFGTNXXXXXXXXXXXAFLVYCSVSLKKLDEWEVEFEAIKDSLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUB5</accession>
    <name>A0A392MUB5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dirigent protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0012076</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Secreted</location>
            <location evidence="4">Extracellular space</location>
            <location evidence="4">Apoplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the plant dirigent protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019820">
        <property type="protein sequence ID" value="MCH91150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009699">
        <property type="term" value="P:phenylpropanoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.480.10">
        <property type="entry name" value="Allene oxide cyclase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044859">
        <property type="entry name" value="Allene_oxi_cyc_Dirigent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004265">
        <property type="entry name" value="Dirigent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21495">
        <property type="entry name" value="NUCLEOPORIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03018">
        <property type="entry name" value="Dirigent"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0052">Apoplast</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017100251" description="Dirigent protein" evidence="4">
        <location>
            <begin position="25"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH91150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="24015" checksum="94D0295281CF1B83" modified="2018-12-05" version="1">MANSKTLLSIAFFTTFLFSSFVNATYYQNISPSFLGFKQEKLTHIHFFLHDIVTGPKPTVVISSESPLNGKSKSPLPFGAIVVLEDPLTXXXXLKSNQIGKAQGFYLTVSQDAVLELELVMGMTFAFTEGKYNGSTLSVLGRNTIGAPVREMPIIGGTGEFRFARGFIQAKTHSVDYHKGDAHVEYNVYVFHYPSTSASEEIFADGSRFTTEPMMGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUG1</accession>
    <name>A0A392MUG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010838</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017232">
        <property type="protein sequence ID" value="MCH89934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.430">
        <property type="entry name" value="Galactose-binding lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF45">
        <property type="entry name" value="LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Malectin-like" evidence="6">
        <location>
            <begin position="13"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21001" checksum="7C9288793A12E892" modified="2018-12-05" version="1" fragment="single">MNNCACMYAGFFINCGGTNDVTVDSLKYIPDGSYTKVGSVATINKTDLLPTLTTLRYFPNTQSRKFCYTFPVIKGNKYLVKTIYYYGEFDGGKQPPVFDQIIEGTKWSVVNTTEDYAKGLSSYYEVVVVSHGKKLSVCLARNEHTGTSSPFISALEVKSLDASLYNPIDFSKYALVTVSRHHFGGEDII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUK0</accession>
    <name>A0A392MUK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012146</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019948">
        <property type="protein sequence ID" value="MCH91220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF63">
        <property type="entry name" value="C-JID DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="2">
        <location>
            <begin position="81"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="249" mass="28797" checksum="EA607A24FEDAFFA3" modified="2018-12-05" version="1">MLKVFDAAGEIEVPEDLGSLNHLKYFCIKAFELETEVPTSIGMLENLETLDLTGWYWRHDIPTNSMEDQSDESDEYIDLDLDLPKLQYLVLDGQLEKLPEWIQKLQNLVKLKLVSSKLTEDSMKLLKSRPNLLSISLMENAYVGETLHFQNEWFKNLKELYLDDLDNLKDILIDQGALPSLKKFNIHSVSVLQLKTIPTGIRHLKKLEDLSISVVGDKFMRNLLLNGGKDHWIFKQVPFVEIKDRRVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUX2</accession>
    <name>A0A392MUX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine/threonine-protein kinase CTR1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0012028</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019695">
        <property type="protein sequence ID" value="MCH91103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010043">
        <property type="entry name" value="UTase/UR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47320">
        <property type="entry name" value="BIFUNCTIONAL URIDYLYLTRANSFERASE/URIDYLYL-REMOVING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47320:SF1">
        <property type="entry name" value="BIFUNCTIONAL URIDYLYLTRANSFERASE_URIDYLYL-REMOVING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017441244" evidence="2">
        <location>
            <begin position="22"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="3">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14623" checksum="6E73421BDED6E533" modified="2018-12-05" version="1" fragment="single">MTNQSFSAEVWLLLQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKETLEKEVLKIERHERSSQQSISSVDERDQARMKNELDHLTIPNDGTDVWEIDPKHTFEIRNSSCICVIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVI9</accession>
    <name>A0A392MVI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase C869.01-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011903</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019448">
        <property type="protein sequence ID" value="MCH90979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="entry name" value="Amidase signature (AS) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678">
        <property type="entry name" value="AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678:SF36">
        <property type="entry name" value="C869.01-LIKE PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="Amidase signature (AS) enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="17233" checksum="8D06C19F80591EE0" modified="2018-12-05" version="1" fragment="single">QADRADQERRTKAPGSLLGLHGIPILVKDNTATKDKLNTTAGSFALLGSVVPRDAGVVTKLREAGAIILGKATLSEWSHYRSSKAPLGWSARGGQGKNPYTLDEPCGSSSGSAISVAANLVTVSLGTETHGSILCPSSFNSVVGIKPTVGLTSRAGVVPISPRQDTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVW6</accession>
    <name>A0A392MVW6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018299">
        <property type="protein sequence ID" value="MCH90434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF86">
        <property type="entry name" value="VIRAL MOVEMENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="194" mass="23017" checksum="CBCDACAD5C1AC967" modified="2018-12-05" version="1">MHYCDLSDLGYKGNMFTWFNNQEDRNHIKARLDRFLATSNWINCFPFYDVSCLNRYTSDHRPLLINFSSTITNNRPLNHYPKRFEQISLKEDQCHKIVKNIWSSDSIVPGLKIGNTLNSLYSWGRDRFGNVPKWIKELQDQLSDLYPRSENNGVMNQISILEKDLDDMLECEELWWSQRAKAMWLKDGDKITKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW70</accession>
    <name>A0A392MW70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011872</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019390">
        <property type="protein sequence ID" value="MCH90948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051058">
        <property type="entry name" value="GDSL_Est/Lipase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45648">
        <property type="entry name" value="GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45648:SF151">
        <property type="entry name" value="GDSL-LIKE LIPASE_ACYLHYDROLASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7358" checksum="603F574F51DBD82E" modified="2018-12-05" version="1" fragment="single">MGCAPAELALKSINGECDVELERAASLYNPQLVKMVKGLNKDIGDDVFIAANARKMQNDFITNPELY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY18</accession>
    <name>A0A392MY18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helicase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022684">
        <property type="protein sequence ID" value="MCH92436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15192" checksum="DE1303C2869ED540" modified="2018-12-05" version="1">MAICRWAGYPDLFITFTCNQNWPELHRVLTQQGLKPEDRPDLLCRVFKIKLDQLIKDIKEGEIFGKVKAVVYTIEFQKHGLPHSHILIFLHPEFRCRTANDIDRIISAEIPDKSLDPVLFQIVSTLMIHGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY37</accession>
    <name>A0A392MY37_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">glucan endo-1,3-beta-D-glucosidase</fullName>
            <ecNumber evidence="4">3.2.1.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">(1-&gt;3)-beta-glucan endohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Beta-1,3-endoglucanase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0012535</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of (1-&gt;3)-beta-D-glucosidic linkages in (1-&gt;3)-beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.39"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
            <topology evidence="2">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the glycosyl hydrolase 17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.39" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010020784">
        <property type="protein sequence ID" value="MCH91608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042973">
        <property type="term" value="F:glucan endo-1,3-beta-D-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.80:FF:000002">
        <property type="entry name" value="Glucan endo-1,3-beta-glucosidase 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000490">
        <property type="entry name" value="Glyco_hydro_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044965">
        <property type="entry name" value="Glyco_hydro_17_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012946">
        <property type="entry name" value="X8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32227">
        <property type="entry name" value="GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00332">
        <property type="entry name" value="Glyco_hydro_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07983">
        <property type="entry name" value="X8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00768">
        <property type="entry name" value="X8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00587">
        <property type="entry name" value="GLYCOSYL_HYDROL_F17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10 14" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="7 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0611">Plant defense</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="domain" description="X8" evidence="15">
        <location>
            <begin position="312"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH91608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="372" mass="41307" checksum="29468F2DA7BF213A" modified="2018-12-05" version="1" fragment="single">MCQIVALVVSLGYAMEEMPTTYRHPTRWHNLLSFSQYQSNADAWLKNSVLPYYPATKITYITVGAEVTESSYNTSSLVVPAMTNVLTALKKLGLHKKIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPMLEFLAENQSPFMIDIYPYYAYRDSPNKVSLDYALFQASSEVIDPNTGLLYTNMFDAQIDAIYYALMALNFRTIKVMVTETGWPSKGSPKEKAATPDNAQTYNTNLIRHVINNTGTPAKPGQELDVYIFSLFNENRKPGLESERNWGLFYPDQTSVYNLDFTGRGGVDMTTAANVTRSNRTSWCIASSKASEIDLQNALDWACGPGNVDCTAIQPSQPCFEPDNLASHASFAFNSYYQQNGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZU6</accession>
    <name>A0A392MZU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023623">
        <property type="protein sequence ID" value="MCH92853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18863" checksum="A2A247EDF908557E" modified="2018-12-05" version="1" fragment="single">VGNSLMELNMISTQEQSSYGSMYSFEILPSSLKLLHIRIWSNRNESRYAIAIPLPRQYQGDIFMNLQLEEFSKKLITQVESRHDCVLDQFYEVNVQYTLHHLRVILSRFFSFSMAVSWANFMIEVNSYFRMIKPMQFLHHHGEYSETSNDEFNWIVGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0J2</accession>
    <name>A0A392N0J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">O-acyltransferase WSD1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012946</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021673">
        <property type="protein sequence ID" value="MCH92014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008374">
        <property type="term" value="F:O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019432">
        <property type="term" value="P:triglyceride biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045034">
        <property type="entry name" value="O-acyltransferase_WSD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009721">
        <property type="entry name" value="O-acyltransferase_WSD1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650">
        <property type="entry name" value="O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31650:SF27">
        <property type="entry name" value="O-ACYLTRANSFERASE WSD1-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06974">
        <property type="entry name" value="WS_DGAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="O-acyltransferase WSD1 C-terminal" evidence="1">
        <location>
            <begin position="101"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="203" mass="22851" checksum="513D546A4A1A98E8" modified="2018-12-05" version="1" fragment="single">MIEDDITPVRSGYERTESLPVTLSNISLSLDQIKEIKSKLGVTINDVVCGMIFYGIRLYMEEMNEKTKKSNSTAVVMLNTRNIGGYQSLKEMQKPESKGLWGNQISFLQVSIPKLSQPDPLEFVWESRKLIQRKRRSFSVHLIGLLMNLEMKLRDPKAVAKIIYDTIGNSSVLFSNMVGPVEKMALANNPVNGLYFTMTGGPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N117</accession>
    <name>A0A392N117_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative inactive poly (ADP-ribose) polymerase SRO2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024573">
        <property type="protein sequence ID" value="MCH93283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N117"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044964">
        <property type="entry name" value="RCD1/SRO1-5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32263:SF23">
        <property type="entry name" value="INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32263">
        <property type="entry name" value="INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="26"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11996" checksum="651E53362AB5748D" modified="2018-12-05" version="1" fragment="single">MESTSTFPAQQQHQQDVWDHHHEDSSSIVSDSESSVSGTTGEQQQKQDSNSFLVMLREGDVVHDLIKTRFLRGLGLISTKTEILAIHRNACSDVVSQARLQSFHIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N126</accession>
    <name>A0A392N126_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024601">
        <property type="protein sequence ID" value="MCH93293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6846" checksum="B20A077F5E3C9690" modified="2018-12-05" version="1" fragment="single">RLMEDRRLGRINYHGLALTESLGWFLRNPDSGRHPVQIPAAAPPPPATAGKFQKFQKXNPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2Y2</accession>
    <name>A0A392N2Y2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0014447</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025080">
        <property type="protein sequence ID" value="MCH93495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DYW" evidence="2">
        <location>
            <begin position="52"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH93495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16627" checksum="3477A48AEFACA2C6" modified="2018-12-05" version="1">MKDIGLQKDAGCSWIEIGGKVYRFLVGDGYLLESKKIQQTWIKLEKKINKIGYKPDTSCVLHELEEEEKVKILRSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVDKREIIXRDNKRFHHFKKGFCSCGDYW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N314</accession>
    <name>A0A392N314_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025146">
        <property type="protein sequence ID" value="MCH93525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N314"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="52"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15215" checksum="415CB11E5C6D0D35" modified="2018-12-05" version="1" fragment="single">IAAPTAPSISQAQFDKLMSLLQNSTLNQASGSASSNQVGSSMVNDHTSVNHQGASHHICISLSWFRSYNEINPVNIKLPNGNFVIAKYSGTDQRTKKMTGFAEEFDGLYYIKLTDKIVHASAVDGSQFPTIPQQALWHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3X9</accession>
    <name>A0A392N3X9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027532">
        <property type="protein sequence ID" value="MCH94526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47340">
        <property type="entry name" value="DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47340:SF1">
        <property type="entry name" value="DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="279"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="306"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="388" mass="40890" checksum="D50B46D74774961C" modified="2018-12-05" version="1" fragment="single">MVSNACVIGGESKLRTDGTVGVLNGSDRSGSVREQRAIVMSDGIEIGTNEPIEGGGAVTELVSGTGTMEPCYSNSVAEGRLVSDVSSAQRGNELEGSTICLVDRDEADTDVVIDLKGNVHDSSTLVNTSLSSVDVSCPRLSVEAENEPQLCLEKPQFSGSSEGPLTDATSTLQYTDGAAVQYKKPSSQDLPSCDFQGNQDMIGHNSSSNLGHQXCNPGNSLDHVEAARVLQCYNLQAPSEKEVNVNTSCSSSATELPLLSQKIDLEEPPRNDVKIFGKILTNPSSTPKPNLSATGNEENGTHHPKLSSGSSSLKLTGHDNTGGKSTILNVDLNDCRVFQNVPVIRSYSDGNKIQPVFSSLPDSAILLAKYPAAFGSYGLEAVSSLQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5Y5</accession>
    <name>A0A392N5Y5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016192</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029231">
        <property type="protein sequence ID" value="MCH95217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5Y5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="89" mass="10399" checksum="DA2B542405C2E903" modified="2018-12-05" version="1">MDWPPQMLEHKKVLVVVVVVVVVAAVMKNLHHSCLSFGFSSFLVIPLQFVRWLGLRKSCWDFGVECESTMKLMCMGFDLMDFEEFVRIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8Z9</accession>
    <name>A0A392N8Z9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Vacuolar protein sorting-associated protein 51 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017244</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN).</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the Golgi-associated retrograde protein (GARP) complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Golgi apparatus</location>
            <location evidence="2">trans-Golgi network</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the VPS51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031925">
        <property type="protein sequence ID" value="MCH96260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8Z9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990745">
        <property type="term" value="C:EARP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000938">
        <property type="term" value="C:GARP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017119">
        <property type="term" value="C:Golgi transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032456">
        <property type="term" value="P:endocytic recycling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007030">
        <property type="term" value="P:Golgi organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048193">
        <property type="term" value="P:Golgi vesicle transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007041">
        <property type="term" value="P:lysosomal transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042147">
        <property type="term" value="P:retrograde transport, endosome to Golgi"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007255">
        <property type="entry name" value="COG8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014812">
        <property type="entry name" value="Vps51"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15954">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15954:SF4">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04124">
        <property type="entry name" value="Dor1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="2" id="KW-0445">Lipid transport</keyword>
    <keyword evidence="2" id="KW-0653">Protein transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU368010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15236" checksum="6E85DF062C578948" modified="2018-12-05" version="1" fragment="single">MLVYENYNKFICATDSIKRMKSNIIGMEGEMEQLLDKIMFVQSRSDNVNTSLSENREHIEKLNKKCNLLRKIQFIYDLPDRLGKCIKVEAYADAVKMYTGSMPIFKTYGDSSFQDCKQASDEAISIIVKNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAG2</accession>
    <name>A0A392NAG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">LRR receptor-like serine/threonine-protein kinase GSO1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0017650</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the polygalacturonase-inhibiting protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032909">
        <property type="protein sequence ID" value="MCH96662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000771">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase GSO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051848">
        <property type="entry name" value="PGIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48059:SF30">
        <property type="entry name" value="OS06G0587000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48059">
        <property type="entry name" value="POLYGALACTURONASE INHIBITOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="6">
        <location>
            <begin position="16"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="7">
        <location>
            <begin position="74"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH96662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="238" mass="25344" checksum="491FC565ECBD34C8" modified="2018-12-05" version="1" fragment="single">TLDTSFVATLSNDADATDTNLLLRVKSELVDPLGAMKNWSPTTHVCKWNGITCDVNQKHVIGLNLSGSGISGSISVELSNLISLQTLDLSSNSLNGSIPLELGSLKNLRTLQLYSNYLSGNIPKEIGNLKKLQVLRIGDNFLTGGIPPSIINLSELNVLGLGYCHLNGTIPVGIGSNNMFEGEIPSSIGSLKALRILNLANNSLSGPIPISLSYLSNLTYLNLLGNKLNGEIPYELNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAZ9</accession>
    <name>A0A392NAZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016614</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030305">
        <property type="protein sequence ID" value="MCH95634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16295" checksum="0C7D790112ECAA3F" modified="2018-12-05" version="1">MSVSPRGAPVLLVKKKDGFGAYKNCKGFLEGNLLRKIVGCCYSELGMRLGEVVWLSRRCGHCGLVEHARMSIGINYDDWKIIGASHLGIKVRCKSRLKSLVVLDDDHTNGRRPSITLISDDLYIVWEIVSIGVDKRWNFKYLNVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC69</accession>
    <name>A0A392NC69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034986">
        <property type="protein sequence ID" value="MCH97447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20470" checksum="78604C14901854E0" modified="2018-12-05" version="1" fragment="single">SSNSHSASNRGQRTRPPTQKQQIHEPTAHGDNDNHETNTNKLPGTQTEQERASINANVHRRNTNRYGGGFPVPASVVTYYHHDSRPLRGYISKPAANATITKLVGDLEQRRWCGGRRRFVSEGGGRVVRTAEVVDKQEVVRVTGGGEGYARKETEKLTSQNSKTFHLGVFVTKLKLHWLTKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCB8</accession>
    <name>A0A392NCB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polyadenylate-binding protein RBP47-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017687</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032999">
        <property type="protein sequence ID" value="MCH96698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000395">
        <property type="entry name" value="Polyadenylate-binding protein RBP47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051485">
        <property type="entry name" value="SR-CTD_assoc_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140">
        <property type="entry name" value="RNA PROCESSING PROTEIN LD23810P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23140:SF0">
        <property type="entry name" value="U2 SNRNP-ASSOCIATED SURP MOTIF-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="28"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="11"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="10948" checksum="BA9E9E137A38AA5D" modified="2018-12-05" version="1" fragment="single">VVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEINDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND86</accession>
    <name>A0A392ND86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018832</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036044">
        <property type="protein sequence ID" value="MCH97836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="196"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="291" mass="32374" checksum="C5E421BD54B01037" modified="2018-12-05" version="1" fragment="single">MSDLYHKENPFESINDDPNVKTYKQTSETLGKENPHFDEPHSAFTSNVANDPNLKIPSSTGDMSDDAAVPTKANFDFVPENVNMSEKEKSPENMVNDNASDNNTVVNSHSKESMKTVSENFDNESVEKDKSGDVNVIDIYEVVSKDKSAEKTPTPSIAKRLRSNTGKAVSSPNKLARTTRAAKKTSEKLVNFGPPRSSSKVTISCSKGKKNLKRKEPPSRDSEFEEEAVKVTTGLMKTVKDLGSCYERLVKEFLINIDEECNDPTSPDYRKVYVRGRCTEFSPDVINQFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF48</accession>
    <name>A0A392NF48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019479</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037694">
        <property type="protein sequence ID" value="MCH98477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="2">
        <location>
            <begin position="225"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="270" mass="30934" checksum="5BE1221C031592AE" modified="2018-12-05" version="1" fragment="single">VPILAADANAEQTRIVNEARLKDLKAKNYLFQSIDRTIIETILDKSSSKAIWDSMKHKFQGSTKVKRAQLQALRGEFETLRMKEDESVNDYFGRVLATVNKMKIQGETMEQRIVVEKILRSMTRKFNYVVCAIEESNNVETLSIDELQGSLLVHEQKMKPVKEEEQALKVAYGERNSSSARGRGRNTKGNQGRDYANYAEFDDTEEVLLMAFDSSPPEHHKSKVWFIDSGCSNHMCGVKEWFFDFDPNFRETVKSIAAKGPYFCVQKKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFA3</accession>
    <name>A0A392NFA3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">pyridoxal 5'-phosphate synthase</fullName>
            <ecNumber evidence="4">1.4.3.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0019022</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.5" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010036510">
        <property type="protein sequence ID" value="MCH98023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFA3"/>
    <dbReference type="UniPathway" id="UPA01068">
        <property type="reaction ID" value="UER00304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004733">
        <property type="term" value="F:pyridoxamine phosphate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="entry name" value="Electron Transport, Fmn-binding Protein, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000659">
        <property type="entry name" value="Pyridox_Oxase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851:SF0">
        <property type="entry name" value="PYRIDOXINE-5'-PHOSPHATE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851">
        <property type="entry name" value="PYRIDOXINE-5-PHOSPHATE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50475">
        <property type="entry name" value="FMN-binding split barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH98023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9980" checksum="F315ABEFD3350554" modified="2018-12-05" version="1" fragment="single">GRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEHQVEADPLNQFRKWFDDALVAGLKEPNAMGLSTVGKDGKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFT0</accession>
    <name>A0A392NFT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036984">
        <property type="protein sequence ID" value="MCH98193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5997" checksum="F63A217A9538C8F9" modified="2018-12-05" version="1">MEPLEVTSHIRDLVLLRVRRPALLRSDLGEVEGGCIPAGAPTLKSVRVKQRFSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG71</accession>
    <name>A0A392NG71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">14-dihydroxy-2-naphthoate octaprenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0019134</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036806">
        <property type="protein sequence ID" value="MCH98135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042372">
        <property type="term" value="P:phylloquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13962">
        <property type="entry name" value="PT_UbiA_UBIAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026046">
        <property type="entry name" value="UBIAD1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13929">
        <property type="entry name" value="1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13929:SF0">
        <property type="entry name" value="UBIA PRENYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH98135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="20259" checksum="1B03A401C95C8AEB" modified="2018-12-05" version="1" fragment="single">NDVYDFDTGVDKNKKESVVNLVGRLVSLKLAFGIFVVAYLCLALGFAGLTWAAIEAGNVRSVLFLTCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLVHGSASSMANHFPLSGTVLSASILVGFTTSLILFCSHFHQVDGDKEVGKLSPLVRLGTERGAEVVKVTVLMLYALLVAFGLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGG0</accession>
    <name>A0A392NGG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037577">
        <property type="protein sequence ID" value="MCH98433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF11">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="2">
        <location>
            <begin position="14"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="226"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="342" mass="39470" checksum="1D98902D45726415" modified="2018-12-05" version="1" fragment="single">HDEFSWPKTADGIYTVRSGYQAIQDWREERNCLPTSSNINSNPIWQKLWSLKIPPKYNTLMWRILHKALPVQSNLMKRGLNCYPLCPRCNETIEDQNHVFSGCVWAKQVWFASSLTLKFRQDNFDFKNWIENSFINTSDQNMELICSLCYHIWKARNLLIFQNKNLPVMDVVFQAQDSIIEYQLHFSQNSEHDFRATQMRLNNVENWIPPPRNTLKLNVDAHLIGDGHWGLGLILRKEDGSCVGAATRVARGMVSAVEAEAQGLVEAIDLLAQIPHQAAIIELDNQIVVQSVLRRRYPRTCWGSLARKSGEFLENNPQISICWIKRTGNTVAHHMARWAAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJH4</accession>
    <name>A0A392NJH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041875">
        <property type="protein sequence ID" value="MCH99980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071260">
        <property type="term" value="P:cellular response to mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042391">
        <property type="term" value="P:regulation of membrane potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027272">
        <property type="entry name" value="Piezo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167:SF25">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="22446" checksum="215C573DD0724ADA" modified="2018-12-05" version="1" fragment="single">MQLYSYERRQSKQTRQVYLDQLEPGPLGFIKRFLIWHSQKILFIALFYASLTPISAFGFLYLLGLIFCSILPKTSSIPSKSFLVYTGFLVTAEYLFQMWGEQAKMFPGQKYSYVSLFLGFRLYSPGFWGLESGLRGKVLVIVACTLQYNVFRWLERMPNIVLSKEQLEEPCPLFVSTEDAFDDVTICNEESNLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKY2</accession>
    <name>A0A392NKY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Amino acid permease 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0021471</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex. May be involved in lateral roots and nodules formation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043251">
        <property type="protein sequence ID" value="MCI00453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009734">
        <property type="term" value="P:auxin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48017">
        <property type="entry name" value="OS05G0424000 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="11" id="KW-0927">Auxin signaling pathway</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="14">
        <location>
            <begin position="14"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCI00453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13439" checksum="FF7FEBDA217CE5C0" modified="2018-12-05" version="1" fragment="single">MCSENGHFEGSIRGIPTSTGTEKVWLVAQALGDIAFSYPFSVILIEIQDTLKSPPPENVTMRRASTISVIVTTFFYLCCGCAGYAAFGNDTPGNLLTGFAAYKLYWLVDFANACIVIHLVGAYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLB3</accession>
    <name>A0A392NLB3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021613</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043683">
        <property type="protein sequence ID" value="MCI00593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLB3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7942" checksum="7262BC92D70DBCDB" modified="2018-12-05" version="1" fragment="single">QNATQVHLEIERNGDTQTPRDTRTPFGYGIMVLVFIPVENCDGFKETELYEFRFGEDKIRPRPIAMPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPB9</accession>
    <name>A0A392NPB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Homeobox-leucine zipper protein ANTHOCYANINLESS 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046876">
        <property type="protein sequence ID" value="MCI01707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042160">
        <property type="entry name" value="HD-Zip_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057993">
        <property type="entry name" value="HD-Zip_IV_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45654:SF49">
        <property type="entry name" value="HOMEOBOX LEUCINE ZIPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45654">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25797">
        <property type="entry name" value="PDF2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0371">Homeobox</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-Zip IV C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16089" checksum="49B9469DE3909A62" modified="2018-12-05" version="1" fragment="single">MTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPS8</accession>
    <name>A0A392NPS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021524</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043425">
        <property type="protein sequence ID" value="MCI00505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="317" mass="35859" checksum="7219ED39562D6288" modified="2018-12-05" version="1" fragment="single">SDVYELLERLQQIWLGTFKIKVNVSKFYKEEEKQHPAHAQECLSRPEGFINNSYRSFVEVLDNNRVNLHEVSSHHVLPFPPPRFVLVDVSRERLDALKGSLVGFLRNDCEFLALSDSLRLEEFKNIAVCNLGVGGGMVLFKSNVAGALKFFLDSCVRWWSAWCSKMVPWTPDVVTYRRAVWVSVWGVPIHVWGLDLFVKIANYVGDYINVNEATLKEVRLDRGWIHIWLPATAKMVDEVVEVRTEGVSYHIRVIEETDGDRNVPVCVANDCSSVGDGSNSIAAGFRHSPTDWESTGDGEEEGEEVTGIDRGHEEYGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPT9</accession>
    <name>A0A392NPT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thaumatin-like protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022429</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thaumatin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046066">
        <property type="protein sequence ID" value="MCI01404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.110.10">
        <property type="entry name" value="Thaumatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037176">
        <property type="entry name" value="Osmotin/thaumatin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001938">
        <property type="entry name" value="Thaumatin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31048">
        <property type="entry name" value="OS03G0233200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00314">
        <property type="entry name" value="Thaumatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002703">
        <property type="entry name" value="Thaumatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00347">
        <property type="entry name" value="THAUMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00205">
        <property type="entry name" value="THN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49870">
        <property type="entry name" value="Osmotin, thaumatin-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51367">
        <property type="entry name" value="THAUMATIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="2">
        <location>
            <begin position="145"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR002703-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="18007" checksum="1644695338157D9E" modified="2018-12-05" version="1" fragment="single">SNSTTIFTIENKCSLIVFPVIFHGAGTSLPSSTGFSLLPGESNVLTMPRSWSGSLWGRTHCSHDSDGNFSCLTGDYASSTINGVNASPLATLAEFNLNFTSNGYDFFDVSVVNGYNLAMMVEAQVGNGFGDCMTTGCMVQLNKTCPSELKVMSGGDCIGCRSASQPFSKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQP9</accession>
    <name>A0A392NQP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein SRG1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0022741</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046891">
        <property type="protein sequence ID" value="MCI01714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050295">
        <property type="entry name" value="Plant_2OG-oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47991">
        <property type="entry name" value="OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0847">Vitamin C</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI01714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="17190" checksum="45ACB6D52D54DB78" modified="2018-12-05" version="1">MMRMNYYPPCPQPEKVIGLTNHSDPQGITLLLQLNEVEGLQIKKDGMWVSVKPLPNAFIVNIGDIIEIITNGTYRSIEHRAIVNSEKERLSIATFYSPKQDSIVGPVESLISEQNPARFKKIGVEEYFKNFFARKLEGKSFIDVLRIEHGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS65</accession>
    <name>A0A392NS65_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Endoglucanase</fullName>
            <ecNumber evidence="9">3.2.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0023715</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>Endohydrolysis of (1-&gt;4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the glycosyl hydrolase 9 (cellulase E) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.4" evidence="9"/>
    <dbReference type="EMBL" id="LXQA010049857">
        <property type="protein sequence ID" value="MCI02681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008810">
        <property type="term" value="F:cellulase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030245">
        <property type="term" value="P:cellulose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001701">
        <property type="entry name" value="Glyco_hydro_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033126">
        <property type="entry name" value="Glyco_hydro_9_Asp/Glu_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22298">
        <property type="entry name" value="ENDO-1,4-BETA-GLUCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00759">
        <property type="entry name" value="Glyco_hydro_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="Six-hairpin glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00698">
        <property type="entry name" value="GH9_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 9" id="KW-0136">Cellulose degradation</keyword>
    <keyword evidence="6 8 9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3 8 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8 9" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 9" evidence="10">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI02681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10655" checksum="9959EB3850AA757E" modified="2018-12-05" version="1">MSYMVGFGEKYPKHIHHRGSXXXXIHAQPQKISCNNGFQYLHTGSPNPNVHVGAIVGGPDSRDNFSDDRDNYQQSEPATYINAPFVGALAFFSNQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU69</accession>
    <name>A0A392NU69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative retroelement protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051974">
        <property type="protein sequence ID" value="MCI03377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="23380" checksum="AA7904A4E452ABB2" modified="2018-12-05" version="1">MPFGLSNAPSTFQATMNGVFRHVLRKFVLVFFDDILVYSKDWESHLHYLSEVLSILAAHQLFVKMSKCQFGVSTVAYXXXXXXXXXNKIRVIQSWPCPHSIVALRGFLGLTGYYRKFVHHYAEVAGPLTDLLKKQAFVWTDMAQAAFAQLKLSMASLPTLVIPNFSLPFDVTTDASGFAVGAVLSQNNQPLAFFSKKLCTRMQVASAYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYE7</accession>
    <name>A0A392NYE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055523">
        <property type="protein sequence ID" value="MCI04474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8400" checksum="DEE52A0E93988D0E" modified="2018-12-05" version="1" fragment="single">MSLIRWLLHSACNILGYPTDEKIEGYPNGEVKSKCLNNLKEVNDENPSSYEFQMPLHYPRYTKVDYEKMEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZJ3</accession>
    <name>A0A392NZJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025573</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055681">
        <property type="protein sequence ID" value="MCI04526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46619:SF3">
        <property type="entry name" value="RNA RECOGNITION MOTIF XS DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46619">
        <property type="entry name" value="RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14108" checksum="C077F78311842445" modified="2018-12-05" version="1" fragment="single">MEAALGKRKYGEDGRDEFARQREQLLRNANGFANRVPGGEFPPGPSGPIKRDMMDPVDLRPSKHSRVDGVGSANNANARHVQIDQSAVKKTFLHHVKLINDNPFLKKNLLEDGKQGRFQCVACGSGNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2S5</accession>
    <name>A0A392P2S5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent Clp protease ATP-binding subunit clpX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0027412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061557">
        <property type="protein sequence ID" value="MCI06353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005759">
        <property type="term" value="C:mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050052">
        <property type="entry name" value="ATP-dep_Clp_protease_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48102:SF7">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48102">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7111" checksum="66B2A72BEB4FD697" modified="2018-12-05" version="1" fragment="single">SGKESGISDXFDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQATGLFVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P963</accession>
    <name>A0A392P963_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras-related protein RABD2a-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023740</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049937">
        <property type="protein sequence ID" value="MCI02706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010068459">
        <property type="protein sequence ID" value="MCI08282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P963"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4982" checksum="AD8D5E8876325D4E" modified="2018-12-05" version="1" fragment="single">TNVEQAFMAMASSIKDRMASQPTNNARPPTVQIRGQPVGQKSGCCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE27</accession>
    <name>A0A392PE27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030818</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073685">
        <property type="protein sequence ID" value="MCI09729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE27"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038920">
        <property type="entry name" value="At3g05675-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060:SF4">
        <property type="entry name" value="1,8-CINEOLE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31060">
        <property type="entry name" value="OSJNBA0011J08.25 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13542" checksum="20709672CFF8734C" modified="2018-12-05" version="1" fragment="single">FLFKEAKDLGVDEIEESKIKQCMQVKLKMLQTWLPLLCRASNGTDAPALSINERAGLERVLEDIIEELEQEKQEQVLSLWLHHFTHCSSSDWPNLHSCYARWCCKSRKQLLLLNEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGM4</accession>
    <name>A0A392PGM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase ATM-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031126</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074770">
        <property type="protein sequence ID" value="MCI10035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:DNA damage response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038980">
        <property type="entry name" value="ATM_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20411" checksum="78D12B90D6458089" modified="2018-12-05" version="1">MVDKAVSIIKKDSYHGASCLSYVPTCEDTGSLAASVRCFLSSPIFCEGRDQNLDFVPFGKVIKSVETLLEEFVNLYDGYSQHLTSLQSDMIMQDTASTDSLQSSCSYDISKSRIVDMELDVNDDSRDVDSLLVKKIGSGVSSSVENWKVGMISVISFFFSASPVLTWNTLYKLMEKEYDPKVDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URM8</accession>
    <name>A0A392URM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099897</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955239">
        <property type="protein sequence ID" value="MCI78626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5361" checksum="E54EDA412567B158" modified="2018-12-05" version="1" fragment="single">MAARYGVERGRLREGGMRGSSWWRKLGRIRDGGGKLGGGWFGEHISKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392US07</accession>
    <name>A0A392US07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010954933">
        <property type="protein sequence ID" value="MCI78617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392US07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3966" checksum="6909CB1BF2EA7B76" modified="2018-12-05" version="1" fragment="single">PCMGEGVGHLCVGMKLEKVKSWTGDCTRDNGKDSDDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUH4</accession>
    <name>A0A392UUH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099821</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010953203">
        <property type="protein sequence ID" value="MCI78551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="21"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7703" checksum="64C73BF805BD83B2" modified="2018-12-05" version="1" fragment="single">MNIEERISVVWWNWSWNRSNLRRHDEIAEKFAEKIRELQRINGELSKKLNEEDDDGENCSEKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX41</accession>
    <name>A0A392LX41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000272</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000166">
        <property type="protein sequence ID" value="MCH79522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11095" checksum="EC2EFE5DE1E82947" modified="2018-12-05" version="1">MTKTMNSNVQIANPDLELGSEFEKTNLKVEEPVTWAKYVSKPYHRSENEDRSEAERRRRDRIGNGECGATRSEMMDDGGSMNCRCEILVLGVSPEEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYP0</accession>
    <name>A0A392LYP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000864</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000690">
        <property type="protein sequence ID" value="MCH80102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="469" mass="53313" checksum="2FFAD2139A418D1A" modified="2018-12-05" version="1">MRYNKSSYKIPTYTNQSFSTAPVNLIRACVFNGNLAVLVNGCSTEEINIQRGLKQGDPLAPFLFLLVVERLSGTIRKAELGVFKGFKVGNNGLSVSHLQYADDTLFLGEATVENPWTLKTVLRCFELASGLKVNFAKSSVMGVNVSIDFLNLAERFISLGGRVVLLKSVLNSIPIFYLSFLKMPVKVWKQIVRLQRNFLWGGASQNRKIAWVSWDKVCRPKNCGGLGIRDLHAVNLALLGKWRWRVIVGDQGIWRDIILARYGSLFPSPHLGGVQMALGRFLYGGKMFDPGLGGLPLKDRYHRLFQVSNQCLEFVGDMGSWVLGQWFWDFRWKRELSVAEFELFQDLLQVDRLPTRQNLFRRRVFREATNSLCALCGNFVESVDHLFTTCDCQGVGRKSRLGCVLIWHAAVWTIWNSRNDLIFAQGTVSVESLVDKVKLSSWKWFLAKNPGNPCSFYEWEVQPVMCWSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ38</accession>
    <name>A0A392LZ38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001027</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000843">
        <property type="protein sequence ID" value="MCH80261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025312">
        <property type="entry name" value="DUF4216"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025452">
        <property type="entry name" value="DUF4218"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004242">
        <property type="entry name" value="Transposase_21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48258">
        <property type="entry name" value="DUF4218 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48258:SF9">
        <property type="entry name" value="OS01G0348150 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13952">
        <property type="entry name" value="DUF4216"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13960">
        <property type="entry name" value="DUF4218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02992">
        <property type="entry name" value="Transposase_21"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4218" evidence="2">
        <location>
            <begin position="556"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4216" evidence="1">
        <location>
            <begin position="811"/>
            <end position="879"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="936" mass="108888" checksum="39E918E3BD2BAEBC" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ65</accession>
    <name>A0A392LZ65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000885">
        <property type="protein sequence ID" value="MCH80291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="83"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="23061" checksum="B6555B72448F99E2" modified="2018-12-05" version="1">MEDDLLIFPSNITAESEAIKAEFADAVDSYAKIIQKKIEGRGMKCVKQIMEYAEKANVKILTLTPYFDPIERMWLDVFEKELTTAFREERERLLKEKQRIEEKKKKLEEEKKKAEREAEQKEAEAMIVEYSSLEASSQNKGKLSTDSGLPAYILKMQEDIEAQRIRKENMAETQKNISARQENMDSKLDAILAFLTPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZC1</accession>
    <name>A0A392LZC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative FBD F-box and LRR protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000990">
        <property type="protein sequence ID" value="MCH80377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053772">
        <property type="entry name" value="At1g61320/At1g61330-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055357">
        <property type="entry name" value="LRR_At1g61320_AtMIF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34145:SF28">
        <property type="entry name" value="F-BOX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34145">
        <property type="entry name" value="OS02G0105600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23622">
        <property type="entry name" value="LRR_At1g61320_AtMIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="At1g61320/AtMIF1 LRR" evidence="1">
        <location>
            <begin position="71"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="34776" checksum="EB2773B47C39BD99" modified="2018-12-05" version="1">MLSLKDLVKTSVLSKRWIQEWGLRMDLNFDLHNMFDYNTFQGLPAILPLFQRFHFESEFATRLDQFMLHYQGAAIRSIRVDFPLCNYHTDVIDRLISKGIAKGVKRIELLFSFEKKNIFRFTDMPLWPYNFSLSLLSDANSLTYLHLENCTLAEPTDFSGLKNLTTIVLDGLFDFETVSRSVLSQLFFECLQLEHATIKNCKLVWPVEITGPKLSHLKIINCDFSDTPDKISVDALNLSSFEYSGTTKEISVVAPRLLKVFWDAAVRQRTPHPLSAIGSLTHIENLAMIITPSQVSQLKSVFAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZJ5</accession>
    <name>A0A392LZJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001075">
        <property type="protein sequence ID" value="MCH80457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="433"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1016"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1016" mass="114894" checksum="085CE01BA4EE15DF" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M175</accession>
    <name>A0A392M175_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001866</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001866">
        <property type="protein sequence ID" value="MCH81087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M175"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17440" checksum="4AC55EDA30A1565C" modified="2018-12-05" version="1">MESKIPWVSCENVCKSKADGGIGIRDLRAVNLALLGKWRWRILSGGQGIWRDILMAKYGSLYPSSHFGGRPVGFRVQYRRLFQVLEQSLSKVGDMGTWVDGEWVWGLKGGMELSAYSVVERACGVEAAPSVVPGPVLAKVWKSWAPSKVIVFSWQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M199</accession>
    <name>A0A392M199_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Structural maintenance of chromosomes protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001773">
        <property type="protein sequence ID" value="MCH81019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051276">
        <property type="term" value="P:chromosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1060.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010935">
        <property type="entry name" value="SMC_hinge"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43977">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06470">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00968">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="Smc hinge domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC hinge" evidence="1">
        <location>
            <begin position="52"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18121" checksum="F6D24FB01E0A81CA" modified="2018-12-05" version="1" fragment="single">SLWNQENELTAEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICKTQNISGVHGPIIELLNCDEXFFTAVEVTAGNSLFHVVVENDDKSTEIIKHLNRQKGGRVTFIPLNRVNAPRVTYPQNSDVIPLLKKLNFRHDYTPAFSQVSFYSSVVPCLHMGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1F9</accession>
    <name>A0A392M1F9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001897">
        <property type="protein sequence ID" value="MCH81111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18758" checksum="EBD8BE7634622555" modified="2018-12-05" version="1">MVSHHVAHRLVGHSTSQFAGMMASCVGQKVFRFTIRHSRGSIDQSWLLFLAAGNEAAESAAAILAAEDPNPLDRWRWIVDSDGVYSISNAYYCEIVVPPRDVTAHALELERNNHNFKVTILPKDPQRDSSVLRDFYLLCPRSWCEESVFSSKIKMFDGMAGDSSFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M243</accession>
    <name>A0A392M243_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002215">
        <property type="protein sequence ID" value="MCH81370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M243"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11946" checksum="713DC192B02DB261" modified="2018-12-05" version="1">MYYCCTKSKKLENGSWDWGCNFFLWEDELGRCSCGDGMCALVRYETKEGVEVCSLQGCSLAGESPCTFARGEGSSRECQRCKVLSIKIKILEAKLEVARSPEKHANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2B1</accession>
    <name>A0A392M2B1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002264</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002347">
        <property type="protein sequence ID" value="MCH81477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2B1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14782" checksum="E7E04126DEEB486E" modified="2018-12-05" version="1">MSISRPEDFFVLEHLEDKYDVPILSEWENFPEAMVISGGGFNKHTIGSVKRKFEELIDASSNMNATLDKTKSGSLPLAFYMEELPGGSSNAQILLLVRADMANFEVRRVLVDPAAMWTSCTPTSSKLCSSTSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2V6</accession>
    <name>A0A392M2V6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0002149</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010002205">
        <property type="protein sequence ID" value="MCH81363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14066">
        <property type="entry name" value="STKc_IRAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000287">
        <property type="entry name" value="probable LRR receptor-like serine/threonine-protein kinase RKF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000492">
        <property type="entry name" value="probable receptor-like protein kinase At1g11050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043891">
        <property type="entry name" value="SPARK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989">
        <property type="entry name" value="OS01G0750732 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989:SF58">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19160">
        <property type="entry name" value="SPARK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="216"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="18">
        <location>
            <begin position="289"/>
            <end position="601"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH81363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="629" mass="69575" checksum="FD6CCAEE176AF3B0" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3N4</accession>
    <name>A0A392M3N4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">B3 domain-containing transcription repressor VAL1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002591">
        <property type="protein sequence ID" value="MCH81653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46245">
        <property type="entry name" value="B3 DOMAIN-CONTAINING PROTEIN OS07G0563300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46245:SF3">
        <property type="entry name" value="B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="185"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="225"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26176" checksum="279D83AD580F4B2E" modified="2018-12-05" version="1">MIXEHEPSGLDALASLAVLGENLIDPTDSSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCTTVKRRFKTLMLRKKKRQSEREADAAAKKDQIRKRDNDLDTNGGASRDDANPFEKEGGLNRSQTEVGESSAGKIDLNSDPNREDSQLDNIAKLRRQLSERMNMNQNGGLRTINTEVQEGQQHSSLVTQSNGEDKRHLSDDRSIASIILNKERRDEVYNQSNESQNNMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3T6</accession>
    <name>A0A392M3T6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002805</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003088">
        <property type="protein sequence ID" value="MCH82010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="3">
        <location>
            <begin position="385"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="563"/>
            <end position="597"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="644" mass="73730" checksum="CA5BC76E937EA30E" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4P4</accession>
    <name>A0A392M4P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003605">
        <property type="protein sequence ID" value="MCH82377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4P4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12285" checksum="306120F17E453459" modified="2018-12-05" version="1">MIQEAENFKAQDMKFKEKVNAINALDDYVYNVKKVMKDNCVSNLLPTQRKNKITSLISKCENLLDGDKKEETYMFVNMLKELESISEFDLGSLKSYVLKIINSDYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4Y7</accession>
    <name>A0A392M4Y7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exocyst subunit Exo70 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003259</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Component of the exocyst complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the EXO70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003712">
        <property type="protein sequence ID" value="MCH82452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4Y7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005546">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.170">
        <property type="entry name" value="Exocyst complex component Exo70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004140">
        <property type="entry name" value="Exo70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046364">
        <property type="entry name" value="Exo70_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542">
        <property type="entry name" value="EXOCYST COMPLEX PROTEIN EXO70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542:SF180">
        <property type="entry name" value="EXOCYST SUBUNIT EXO70 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03081">
        <property type="entry name" value="Exo70_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst complex subunit Exo70 C-terminal" evidence="4">
        <location>
            <begin position="2"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="unsure residue" description="E or Q" evidence="5">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU365026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="21811" checksum="85C24BAB2671AA8F" modified="2018-12-05" version="1">MEQILGMLERKLIAKSKNYKDPAWRHIFMLINRSHIEAINKSLDLETIFGNDWFQNNKAKIQQNLDLYKRNSWNEVLEFLKLDNNEKLALNDNITEEVLKEKIHLFNSHFEKISRVQSTWFIYETKPREEIVTYVGNILLPAYGIFIGRLEDILGNQAYKYIKYGMFEIQDQLNHLFLGNQNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M555</accession>
    <name>A0A392M555_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003272</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003728">
        <property type="protein sequence ID" value="MCH82465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M555"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7246" checksum="871FFDA2848CCAE9" modified="2018-12-05" version="1">MVVVDVGTMAVDRDRDVGTMAVDRERRRHNSKSTTRLTMVREREMPTLLQICGEANRDGGGVDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M573</accession>
    <name>A0A392M573_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002930">
        <property type="protein sequence ID" value="MCH81898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="35457" checksum="B0A66B6A7682174B" modified="2018-12-05" version="1">MRENNPIYVLWNPLTEEFREVPPSPAQVTPKHTEKDISDDMSLEYIFHGFGYDQLTDDFKVIQFDNDIHPMTVSRFDNRIHAMTLLSFDLSDEVFLTTPIGEETFYLYSSYRPHQHLTVLNGSIALISNYHEDDIIFHISILGELGVSESWIKLYIYGPLPSIQWPPIGFGKMGYMFITKNDYEVVCVDLNTQIIEEVGTGEDTSRFIVGLYKDSLRRFSSLEIFSRQPVQNLAGVLVTQTMAXGPVIDAATTEPGVEQQIPTVDETLKKKPQPEEDKAPIVEDDADKEEDKDGDEDDDDKEDGALGHYFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5E0</accession>
    <name>A0A392M5E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003924">
        <property type="protein sequence ID" value="MCH82607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="465"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="658"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="658" mass="75180" checksum="FCA2E3A0025D2E6F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M652</accession>
    <name>A0A392M652_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003368">
        <property type="protein sequence ID" value="MCH82218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M652"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="249"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="330" mass="37902" checksum="7C7ABB58ED0AEF02" modified="2018-12-05" version="1" fragment="single">EELTKQLSKLPQQLKERLKGLKGVIEEWSRLTYGVAEEKKKRLIHDIMVLDIKSEALGLVDGEVDERKKLFEELWMTLKSIDMVLNFQRSRSKWLKEGDTNSKYFHNCVKASSRRNKMVALRTANGWVEGPIHVREEVVMYFRNHFANEDWHRPTLDNIEFSCLPPEGVDVLTAIFTLEEITRVVKDSDGSKSLGPDGFNFAFIKEFWDLLKFDIRIMFDQFHGNATLPKGILSYFITLIPKVYSPQSLGDFRPISLLGCLYKLIAKVLASRLAKVVGDLIPKTQSAFLKGRQLVDGVVVVNEVIDFAKRARKECLILKVDFEKAYDSVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6G9</accession>
    <name>A0A392M6G9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004053">
        <property type="protein sequence ID" value="MCH82703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF376">
        <property type="entry name" value="TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13201" checksum="6C6E1AB2B062405A" modified="2018-12-05" version="1">MGLRFHKNLEIARFAVRNLMFLEPSNSGYYSLLVNMYAEVNRWSDVATIRTEMKDLGVEKKCPGSSWIEINKEIHVFAASDKYNPSYGQVHLLLVELDEQLRLAGXVHELGSILY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6H0</accession>
    <name>A0A392M6H0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">A2U01_0003714</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010004355">
        <property type="protein sequence ID" value="MCH82901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000383">
        <property type="entry name" value="Leucine-rich repeat receptor protein kinase EMS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000041">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000815">
        <property type="entry name" value="serine/threonine-protein kinase BRI1-like 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000213">
        <property type="entry name" value="Tyrosine-sulfated glycopeptide receptor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045381">
        <property type="entry name" value="BRI1_island_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27000">
        <property type="entry name" value="LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27000:SF800">
        <property type="entry name" value="OS11G0197000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20141">
        <property type="entry name" value="Island"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="20" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="20" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="17">
        <location>
            <begin position="14"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="19">
        <location>
            <begin position="175"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="Brassinosteroid receptor BRI1 island" evidence="18">
        <location>
            <begin position="525"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="695"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="16">
        <location>
            <begin position="705"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="742"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF20141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCH82901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="742" mass="80508" checksum="D1E323C998264E0F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M744</accession>
    <name>A0A392M744_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">SUCrose transport protein SUC5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0004106</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; sucrose metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2.4) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004927">
        <property type="protein sequence ID" value="MCH83287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M744"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005773">
        <property type="term" value="C:vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008506">
        <property type="term" value="F:sucrose:proton symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19432:SF89">
        <property type="entry name" value="SUCROSE_H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19432">
        <property type="entry name" value="SUGAR TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH83287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="17942" checksum="0F00FEAB6047DE2C" modified="2018-12-05" version="1">MVALASIAAGIQFGWALQLSLLTPYVQLLGVPHQWAANIWLYKPIFGMVIQPLVGYYSDRAHSSSLASLQWQFLLHVPFALASIYSNATEAGQGLYLGVLNISIVAPQIIVSSLSGQWDKLFGGNCPFGHSDTGRYGQCIDDWRGCWFPLIGAKQINWFIGVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M782</accession>
    <name>A0A392M782_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004908">
        <property type="protein sequence ID" value="MCH83276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="490"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="255"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="330"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="372"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="378"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="616" mass="68406" checksum="CF37198696C3D1D4" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7H8</accession>
    <name>A0A392M7H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003918</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004657">
        <property type="protein sequence ID" value="MCH83103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="3">
        <location>
            <begin position="34"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="4">
        <location>
            <begin position="171"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="397"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="646"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="646" mass="74523" checksum="B1C0E075FCF3E90D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8V2</accession>
    <name>A0A392M8V2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent Clp protease proteolytic subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0004036</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Hydrolysis of proteins to small peptides in the presence of ATP and magnesium. alpha-casein is the usual test substrate. In the absence of ATP, only oligopeptides shorter than five residues are hydrolyzed (such as succinyl-Leu-Tyr-|-NHMec, and Leu-Tyr-Leu-|-Tyr-Trp, in which cleavage of the -Tyr-|-Leu- and -Tyr-|-Trp bonds also occurs).</text>
            <dbReference type="EC" id="3.4.21.92"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004827">
        <property type="protein sequence ID" value="MCH83218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8V2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009368">
        <property type="term" value="C:endopeptidase Clp complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009532">
        <property type="term" value="C:plastid stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051117">
        <property type="term" value="F:ATPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018215">
        <property type="entry name" value="ClpP_Ser_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381:SF50">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00381">
        <property type="entry name" value="CLP_PROTEASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH83218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12783" checksum="7866AEF4B464B00D" modified="2018-12-05" version="1">MTADFIISQLLFLDADDPKKDIKLFINSPGGSVTAGMGIYDTMKLCKADISTVCLGLAASMGAFLLAAGTKGKRYCMPNARIMIHHPLGGAGGKRIMFKFKLILDFKHLLGKCGMWKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M934</accession>
    <name>A0A392M934_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HECT-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.26</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0004545</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.26"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.26" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010005642">
        <property type="protein sequence ID" value="MCH83719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M934"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000209">
        <property type="term" value="P:protein polyubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044611">
        <property type="entry name" value="E3A/B/C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45700">
        <property type="entry name" value="UBIQUITIN-PROTEIN LIGASE E3C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45700:SF2">
        <property type="entry name" value="UBIQUITIN-PROTEIN LIGASE E3C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="196"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="418" mass="46614" checksum="E3BBEBA90AEE51FE" modified="2018-12-05" version="1">MDMSELVKSEILVSIKAIPPVGWSLANFICLATGYENNSVDSGSFNQGLDCALYVHVIVTLAESLLACLDNIEWVKKKKSLQTDAESSTHDSLIMSYMDQFRPVCQQWHLTSLLASVNRDATNKAETSISNNLEYLGKLDLCDVALFYSNLLRIFSALSPIRGSLPVLNMLSFTPGFLVRLWGELEDSFFSGDKHMSDNHTSENGKHKASEKIPKQPSKDGANKWVSVFHKFTGKSQTATDCSDPIGSHSAPSGVNLDPSDVWDIEPMRHGPQGIPKSLFATLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHGNGHHNRPLMDSAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPVAVATRTHEIFSANLRSDDSSSSSSVGSVITMTPHVFPFQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9L4</accession>
    <name>A0A392M9L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004311</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005271">
        <property type="protein sequence ID" value="MCH83488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000366">
        <property type="entry name" value="Pentatricopeptide (PPR) repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000396">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein At2g36730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000144">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000488">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046849">
        <property type="entry name" value="E2_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF542">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20430">
        <property type="entry name" value="Eplus_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <feature type="repeat" description="PPR" evidence="4">
        <location>
            <begin position="73"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="4">
        <location>
            <begin position="205"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="4">
        <location>
            <begin position="306"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="DYW" evidence="5">
        <location>
            <begin position="522"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="573"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="573" mass="64285" checksum="D9E434629DF3FE1F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAV1</accession>
    <name>A0A392MAV1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-dependent RNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005444</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 1">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.48"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RdRP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.48" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010007105">
        <property type="protein sequence ID" value="MCH84612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031380">
        <property type="term" value="C:nuclear RNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003968">
        <property type="term" value="F:RNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030422">
        <property type="term" value="P:siRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057590">
        <property type="entry name" value="PH_RDR1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007855">
        <property type="entry name" value="RDRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057596">
        <property type="entry name" value="RDRP_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058751">
        <property type="entry name" value="RDRP_helical"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23079">
        <property type="entry name" value="RNA-DEPENDENT RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23079:SF1">
        <property type="entry name" value="RNA-DEPENDENT RNA POLYMERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24823">
        <property type="entry name" value="PH_RDR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05183">
        <property type="entry name" value="RdRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26252">
        <property type="entry name" value="RdRP_helical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 5" id="KW-0696">RNA-directed RNA polymerase</keyword>
    <keyword evidence="1" id="KW-0943">RNA-mediated gene silencing</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RDR1/2-like PH-like" evidence="3">
        <location>
            <begin position="2"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="RDRP helical" evidence="4">
        <location>
            <begin position="102"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="RDRP core" evidence="2">
        <location>
            <begin position="205"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF26252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="421" mass="47632" checksum="761286845098C921" modified="2018-12-05" version="1" fragment="single">MLLGAPRVYELNIPNSDVDVYNIYNDPSKNYSRDSSDDQWIRAIDFTPCSCIGQSSALCVELPSNRDFPNFRENCAHYEESEGQYTLQIGSPFSSNPDVVPMVAPPRGIQIPFDLLFKVNSLVQHGCVSGSELDNDFYRLVDPLRINVDFIEHALEKMYYSKDFCYEPVKWLKDQYRMYLGANAPPRSPTISLDNGLVYIRRAQITPCKVYFCGPEINVSNRVLRHFHEHIDNFLRVSFVDEELDNLYSADLSTRNSERGRTGIYYRILSILMNGLDIGGKKFEFLAFSSSQLRENSLWMFARTTTGLTADSIRAWMGDFSRIRNVAKYAARLGQSFGSSTETLSVSRDEIEIIPDAKVKHGATEYVFSDGIGKISLELARKVAKKCGYDSIPSAFQIRYGGYKGVVAVDPTSSVKLSLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAV6</accession>
    <name>A0A392MAV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005045">
        <property type="protein sequence ID" value="MCH83354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34197:SF3">
        <property type="entry name" value="DUF740 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34197">
        <property type="entry name" value="OS04G0591300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="337" mass="37249" checksum="6E0BDDFDFAB6E761" modified="2018-12-05" version="1" fragment="single">CGEQRLSSCSCSDEITSNRNSCSVEVGSVGRVSFLIENEKNETNPIQHSSSNSNSNTKTKIHDKEEEVMVLRRSSSNCVDIKRHKGFWRIGKLFRKNKKKXCGRSVGGFDEKSEIWMVDNNHNHHGGVSRSRSLCSFRGGAIFGSEDGGDSVLSGARSSISAARSSGVNGGLILESGRRSGYSEAEPRRSDFYYEYENGRKSGVMETDGSSYNGVINRRVFSLRESDFKGLDESSFIDLKLDYSSESKQHDFVNGKMGDTLSAFGSIRGGGGNFMVHDGGGDGVLTSGSGGSCRISVNDRGIKRERRKSIKGWRWIFKYXSNWGSSRKRDQDLMFKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC16</accession>
    <name>A0A392MC16_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon Copia-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005902</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007834">
        <property type="protein sequence ID" value="MCH85060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="2">
        <location>
            <begin position="21"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9608" checksum="09D568A77547A36C" modified="2018-12-05" version="1">MPPRIAPVDPSTDPTSPYFVHSSDGPSTVKVTPLLNGCNYHSWSRSXLNPSSSWKTQLMFGTISRRVSHKPIWFAFLNFNKNFTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDG7</accession>
    <name>A0A392MDG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">GABA transporter 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0005155</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006639">
        <property type="protein sequence ID" value="MCH84324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="8">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH84324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6407" checksum="15E4D60DE2CBB7A0" modified="2018-12-05" version="1">MPFFGDFVSICGAIGFTPLDFVFPALAYLKVGNIAKNSKLVRSIVEDIKSYKFFHDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDR1</accession>
    <name>A0A392MDR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin-protein ligase COP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008166">
        <property type="protein sequence ID" value="MCH85255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042755">
        <property type="entry name" value="COP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44080">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE COP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44080:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE COP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17294" checksum="CADFE31F852DD03E" modified="2018-12-05" version="1">MEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYSVKLRMLDDFGGRKSLHSSMDKNSSGLASSPLNLRGGLSSGSHTKKNDGKSQISSHGIGIQRRDAISGSDSQYVNQSGLALVRKKRVHTQVILV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDT3</accession>
    <name>A0A392MDT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008519">
        <property type="protein sequence ID" value="MCH85441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF26">
        <property type="entry name" value="LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="1">
        <location>
            <begin position="24"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="433" mass="49568" checksum="C0165E6F686745CA" modified="2018-12-05" version="1" fragment="single">KLHMIYGTAESIGCEGGSSTREIDASINERDVLEAFQPNSNLNRLTIEYYKGSSFPNWLGDYHLPNLVSLQLIHCNFCSQFPPLGQLPSLKKLYIHHSDGIEIIGKEFYGNNSTNVPFRSLKVLEFQDMPHWKEWLCVEGFPLLKNLSIKECPMLERDLPQHLPALQKLVISNCQKLEASIPKADNIQELELIECDGKFATELPSNSKKFILRGNEHSELSIANMMKRFLHGELEFDGSDFLECTSLDFSCYDSLPRLLVSGWHFSSVPFALHVFTNLHSLELFDFPQLESFPRGGLPSNLSKLVIHNCPKLICSREDWGLFQLSSLKYFRVSDEFENVESFPEENLLPHTLDTLFLYNCSKLRTMNYKGLLHLKSLYIWSCPCLESLPEEGLSNSLSCLEIGMCPLIKEKYQKEGGERWHTILHIPTIKITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEC5</accession>
    <name>A0A392MEC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006245</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008442">
        <property type="protein sequence ID" value="MCH85399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7569" checksum="618AE265C57A461B" modified="2018-12-05" version="1" fragment="single">IRRKYMRIPYVCSEKGVKGTILGYYSGAGKRESSEDRLGLTAWRIESGKVSEMSVEEEGIHKVFEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFN6</accession>
    <name>A0A392MFN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger CCCH domain-containing protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007861">
        <property type="protein sequence ID" value="MCH85074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16776" checksum="03AB377CEA283BE0" modified="2018-12-05" version="1" fragment="single">ERVYTFKLIHVSKEDTGYISTLRNNVRSRPWGAAIGCSYRVERCCIVKKGGGTTDLEPCLTHTSTIEPSLAPMAVERTVTTRAAASNTSRKQRFIREVSIQYNLCNEPWIKYSISIVADKGLKRPLYTSARLKKGEVLYLETHSCRYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFV1</accession>
    <name>A0A392MFV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">60S ribosomal protein L13A-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009461">
        <property type="protein sequence ID" value="MCH85955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.3250">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5791" checksum="C26A65594BFEA1A6" modified="2018-12-05" version="1" fragment="single">MMRSLGIGKEEKRKERSQLAYERKKLINKLRVKVEKIVDEKLGSQLEFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGA3</accession>
    <name>A0A392MGA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007196</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010161">
        <property type="protein sequence ID" value="MCH86341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF144">
        <property type="entry name" value="RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="14"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="23823" checksum="D8873A13CC2C1AE1" modified="2018-12-05" version="1" fragment="single">MALLTPSSSFCYGFTYDVFLSFRGLDTRYGFTGNLYIALHNKGIHTFIDNEELERGQEITPSLLKAIEESRIAIIILSKNYASSSFCLDELVKILDDIKGKGRLVLPIFYDIDPSIVRKQTGSYGEALAMHEERLKSDMQRLHKWRTALQQVANLSGLHFKKGEGYEYEFIGNIVEHVSSKINRVALPVADYPVGLEPRMLEINSLLDVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGG9</accession>
    <name>A0A392MGG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007268</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010275">
        <property type="protein sequence ID" value="MCH86411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18909" checksum="18405142C4669907" modified="2018-12-05" version="1" fragment="single">GCTPFKVVYGRPPPSHTKFTPAEVSVVARDLIYRDEVLQPLWFCCFQTTATLAASNALCFMYFSGRRLWVTRKWKWSYSLTSRGSATLCIMLATGFVSRDGGLIMIDQIPVKRHSRSEEESTWRIGSLCXVKRHSRSEEEATRRIGSLCRSNVPISTLRRKLIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGM7</accession>
    <name>A0A392MGM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009996">
        <property type="protein sequence ID" value="MCH86245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051195">
        <property type="entry name" value="Fungal_stress_NST1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31780:SF10">
        <property type="entry name" value="LD36051P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31780">
        <property type="entry name" value="STRESS RESPONSE PROTEIN NST1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="235"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="310"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="404"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="183"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="247"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="330"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="424"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="515"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="515" mass="56680" checksum="C8A30A098DFAF5F9" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGS8</accession>
    <name>A0A392MGS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010450">
        <property type="protein sequence ID" value="MCH86521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10054" checksum="AD3F5412CEAE4F5E" modified="2018-12-05" version="1">MKSTIRDLIPTHNWTLGFCANRFFGHGFGFSMEKRREVGFSLKIEGLGFNFVGEVCRIGEKLGFGLRWRRKDGSLILRFACFVFQSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH54</accession>
    <name>A0A392MH54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010203">
        <property type="protein sequence ID" value="MCH86369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8018" checksum="CDCF5503973FD683" modified="2018-12-05" version="1">MDVKCFFPLSTSSSSCTATTIKSFANHYSSAGRAIHSFCDVFISGIFDIVCDLLCAVYPPSNPPSLNNYLFVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIR5</accession>
    <name>A0A392MIR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006988</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009788">
        <property type="protein sequence ID" value="MCH86134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11124" checksum="BAB27C3D97FB2525" modified="2018-12-05" version="1">MERCEGEKKKVENEAKNMITEIKELMSSIKNSKSSYAASLSKQQKLKDKWEGFRIAFAERETVTLIKWPRLIYLSLASLGGIAFLALFGYGMISITID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJR6</accession>
    <name>A0A392MJR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative inactive leucine-rich repeat receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007351</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010402">
        <property type="protein sequence ID" value="MCH86494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051716">
        <property type="entry name" value="Plant_RL_S/T_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053">
        <property type="entry name" value="LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053:SF59">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="225"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="333" mass="36732" checksum="948D108A61E4D151" modified="2018-12-05" version="1" fragment="single">HLPDWLDSFPSLTVLNLNQNLFNGSLPDSLSSLTNMRVLSLSHNRFYGSVPDLSRLVNLQVLELDDNSFGPNFPRTYNKLVTCVLRNNKFRSSLPDNMSSYYQLERFDISENAFVGPFQLELFSLPAISYINISRNKLSGMLFENLSCNSILEEVDLSSNLLTGKLPKCLVSNSNDRKFLYGGNCLEDTNQNQNQHEQAFCHTEAIAVGIGLNERKKHKGVSKTVLAFGIIGGIFGGISLVALIFMIMIRRGNGKSMTMKNSKTKLISEKAASGKLISDSRHVPKAMKFGTVGLPPYRAFSLEEIVTATNNFDTTSFIGEGSQGQVGSGVVIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJY6</accession>
    <name>A0A392MJY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Bromodomain adjacent to zinc finger domain protein 2B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0008693</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012962">
        <property type="protein sequence ID" value="MCH87812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140566">
        <property type="term" value="F:histone reader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034244">
        <property type="term" value="P:negative regulation of transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049914">
        <property type="entry name" value="PHD1-3/5-6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33304">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33304:SF51">
        <property type="entry name" value="ZINC FINGER PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="59"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="85"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="127"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="175"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="210"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="274"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH87812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="309" mass="33766" checksum="AB409E76D53768F7" modified="2018-12-05" version="1" fragment="single">MLEKLPEGDWFCEECQDAVEAEKKRLDVEEKKIIKTTSTSQVSGKRLHDNIEVAPPAAKRQALELSKGSPKVSSPKRLVPLSRESSFKSSDKLKGKSGLLMPPRNHSGGDDTQTTRSPSIGPRGQISKSMLLKSNSSNNLSSKPRVKIVDEVFPPRPKGGNEQTSKNMEIPGRMTSRSTLFKSSSLGRSSAIESKVKMLSPKSATTQDLKGSRHFKESGVFDRKYLSRNDRPVASSVVSTPKGDQKLTPRAETIIKSSSVNNREVKVNQDGKLSASSKSMNNISRKNLEPQGSSERTSASNDEALQDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK13</accession>
    <name>A0A392MK13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pseudouridine-5'-monophosphatase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012175">
        <property type="protein sequence ID" value="MCH87425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Riboflavin kinase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12083" checksum="67120F3A7CF93B20" modified="2018-12-05" version="1" fragment="single">VDNTLPIEPIHLNGLYVNGSLLGTTENATFAIPDQVVGLYFGWAKFDSDKNFKILVSIHLDFSSVAYKKIDVWLIDANTDLTSDQKKMQICLVGYIRAWDNKVMVIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKH4</accession>
    <name>A0A392MKH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Structural maintenance of chromosomes protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007624</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010900">
        <property type="protein sequence ID" value="MCH86764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000796">
        <property type="term" value="C:condensin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007076">
        <property type="term" value="P:mitotic chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18937:SF172">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18937">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="121"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20968" checksum="D990DF4D97ED45EC" modified="2018-12-05" version="1" fragment="single">MIDKHRDVLEEATSEHNKMKKAVDELRASEVDADFKLKDMKKAFKELEIKAKGYRKRLDELQTALSKHLEQIQVDLVDHEKVQATLAEEHLNAACDLKKACETVALLEAQLKEMNPNLDSIAEYRKKVSLYNERVEELNAVTQERDDIKKQYDELRKKRLDEFMEGFNAISLKLKEMYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKN0</accession>
    <name>A0A392MKN0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008802</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013155">
        <property type="protein sequence ID" value="MCH87921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="31"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="3">
        <location>
            <begin position="172"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="252"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="275"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="287"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="300" mass="34123" checksum="118DE1B964857BCE" modified="2018-12-05" version="1" fragment="single">MASEDLVNSSLHGEEEEGFVFDFDEGEEETVDLRWCLVGRFLCDRPIHFNSMKVRMADLWCPVKGVTIKEAKPGLFLFHFAHQLDMEEVLKKGPWTFDKHILIVERVQIGVQVESIPLHHADFWMQVHDLPMGLMKEKVGKTLGNYVGSLVEYDKNNNTSFWRKYMRLRVRIDVRSPLKKDTKVKNQGGEWCTVKFKYEKLXXXXXXXGVMGHAENKCDIRFAMTNDDGSREWSSELRAETRRVVGRPVSRWLREEGGGGPSGGRVGPIGGSGGRVDEMGERHNESSIHGPTNLNAPTDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML44</accession>
    <name>A0A392ML44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007858</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011326">
        <property type="protein sequence ID" value="MCH86994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33828:SF2">
        <property type="entry name" value="NUCLEOLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33828">
        <property type="entry name" value="OS05G0596200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10873" checksum="5893DD6D65C3E80D" modified="2018-12-05" version="1">MESGLLPREVAKKVFEKKQKKGMQQKITSPVKAGTTVKQSTKSXXXXXXSSTTPNSSAKKKTTNSTSKPTKKRKSESISSEDDDSDFDVGPATTKKRKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLG7</accession>
    <name>A0A392MLG7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MULE transposase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013372">
        <property type="protein sequence ID" value="MCH88033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973:SF187">
        <property type="entry name" value="MUTATOR TRANSPOSASE MUDRA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973">
        <property type="entry name" value="POLYPROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MULE transposase" evidence="1">
        <location>
            <begin position="241"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="495" mass="57314" checksum="0AB16E8C4EB9A3DF" modified="2018-12-05" version="1" fragment="single">MNLDPIMTAEFEVEDDDSDILDTPEGSEIDEATRPKFPKFKLPEGDEVVKFELGFEFTTKGLVKDVVKHYAMQRKKSLHFKKNDKTRXKKECPFHLRFSKRIGSNCWQITSFTEKHACHRTDKNRQAKTEWLAKRFVHTLRHTPEMKTKSLIVECKEKWGVQLNHDQAYRAKKRAIEMLQGAASEQYSHLRSYAEELRRSNRNSTVIIQCDTSNNGLIFERIYVCLEACKAAFAYTCRPLIGLDACFLKGDHGGQLMAAVGKDGNNQMIPIAYAVVEAETRDSWQWFLNLLLEDLNSIQQRDWAFISDQQKGLEIAIQNISAGVEHRLCVNHLYANWKKKYPGAEMKEVLWLAARATTVPGWQRAMQRMKNLNENAWKDMMKVPAAKWTRSAYNTNTQCDLQVNNMCEAFNKTILEHRDKPIITLLEGLKNYISKRIVTQRELMQRYTGSICPKIQQLLEKAKRAADGWSTHWAGDLEHRGHFYVENGNDQFTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MME4</accession>
    <name>A0A392MME4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014621">
        <property type="protein sequence ID" value="MCH88670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MME4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31267">
        <property type="entry name" value="DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31267:SF7">
        <property type="entry name" value="DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="25964" checksum="BB0C2A04C1CEC89B" modified="2018-12-05" version="1" fragment="single">MPGNEAVDRVHNFFGQENLSQGQYHSQAVDGNWPGLSNNIWVGSQRSSGVPFISNLKNFNQQQSDSEQGHISSPHLRHSLNLSQSNLRPESGRNQLPNHLAAVSGYMQGQQVFQTRHNGANNLGVDTESDWHSLSRGVPVLESQGSSGLELYKKNLARNDAGESPVNFDFFGGQQQVSGHQNGMLQTLPRQHSGINEMHLLQQQAILNQMQELQRQQQFHQLEAKQHNSMTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNJ7</accession>
    <name>A0A392MNJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009566</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014628">
        <property type="protein sequence ID" value="MCH88675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12069" checksum="18121DA901D103F2" modified="2018-12-05" version="1">MLRSEAVLASSASELFVALARDSCALHLWLEKGNGLFEKCCSQLLDIKYRHFEELECFCYVISCCRQGCISQGLVRMLGSEAFSTSRAFELLVTLARDPLVAYHRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNM1</accession>
    <name>A0A392MNM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PI-PLC X domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014906">
        <property type="protein sequence ID" value="MCH88813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051057">
        <property type="entry name" value="PI-PLC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13593:SF135">
        <property type="entry name" value="MAP3K-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26178">
        <property type="entry name" value="PI-PLC_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="28242" checksum="D727B576D90D890A" modified="2018-12-05" version="1" fragment="single">MSIYDLQQPALTALTNMRTFLDANPSEIITIFIEDYVKAPSGISKVIQASGLHKYMFPVSRLPKNGEDWPIVDDMIQKNQRFIAFGSKESKEASEGIPYTWKYVVENQYGDEGMQDGVCPKRAESPPMDTKTRSLVLVNFFHNTPNRSQACADNSARLLNMLKTCHAASGNRWPNFIAVDYYQRSDGGGAPEAVDAANGHLTCGCDSIAYCKPNGTFGSCDVPPISPPPPASEAPPTGNQQSPNKNDKKNNAYIGRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPY6</accession>
    <name>A0A392MPY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013967">
        <property type="protein sequence ID" value="MCH88334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF99">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="307"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="426"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="426"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="440"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="451" mass="51386" checksum="0BD226FE09EAE448" modified="2018-12-05" version="1" fragment="single">MANSSALLGFNSESHETTTEEDDLMERSLKKIKGGEKPFEPGSSQPISYADIEGSPKVRDTHRVKSYKNSLLGVEEEETHDEEEEKEFSEGDEDREWRPDEGNKFTGMKVVERQRGEHACPDFVLTEEEEARLQKTMEEWSDSEVIRKEDWLQGLGNKVEADVEDHYRALIDGPWMIYDNYLVVREWSPNFHPSGEVIEKVAVWVRFSGLPIEYYDNKMLHFIGNRIGRTVKVDRTTQSQARGKYARLCVEVDLTKPLLAMFQIKDRYYKVEYEGLHMLCLACGTFGHYKEGCVAKVNNTVWNGEQATENARKGGPANTTSVQEGPWKVVQKTRRPRKKVDGGKFDGTMVNEILKNTGSRYAILQENIPDSEEEVIGDLHDDNMVIVTTKDTQNHAKNSGLKKGMESVKRNIGGDYKVELVKNKTTTSINNGATPRTSVHQREENPRSSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPZ8</accession>
    <name>A0A392MPZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009609</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014701">
        <property type="protein sequence ID" value="MCH88718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447">
        <property type="entry name" value="OS03G0856100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447:SF28">
        <property type="entry name" value="PENTACOTRIPEPTIDE-REPEAT REGION OF PRORP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="91"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="126"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="20019" checksum="8D648536DC1586B4" modified="2018-12-05" version="1" fragment="single">DRIDRDHGDYEKLVSVGTFATMIRRYARADMHNAAIRTFEFAKDKKSILNSASEMSLFEILIDALCKEGSCREASEYFLRRKETDLGWVPSVRVYNIMLNGWFRARKLKHAERLWEEMKEENVRPSVVTYGTLVEGYCRMRRVEKALEMIGEMTKDGIEPNAIVYNPIIDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ53</accession>
    <name>A0A392MQ53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monoglyceride lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016324">
        <property type="protein sequence ID" value="MCH89521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051044">
        <property type="entry name" value="MAG_DAG_Lipase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11614">
        <property type="entry name" value="PHOSPHOLIPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serine aminopeptidase S33" evidence="1">
        <location>
            <begin position="3"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9137" checksum="2A5054FD9336490F" modified="2018-12-05" version="1">MHVCLPLLILHGEADIVTDPSVSKAFYEKASSSDKKLKLYKDAYHSLLEGEPDEMIIQVFSDIILWLDEHSFKHSSSSSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQB8</accession>
    <name>A0A392MQB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gamma aminobutyrate transaminase 1 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0009363</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014237">
        <property type="protein sequence ID" value="MCH88474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004015">
        <property type="term" value="F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009448">
        <property type="term" value="P:gamma-aminobutyric acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049704">
        <property type="entry name" value="Aminotrans_3_PPA_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42684">
        <property type="entry name" value="ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42684:SF3">
        <property type="entry name" value="ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH88474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="17954" checksum="11C66601DF5047E6" modified="2018-12-05" version="1" fragment="single">MLSLTYTFFWGQIAAFIAEPVMGAGGVILPPATYFEKIQAVVKKYDILFIADEVICAFGRLGTMFGSDKYNIKPDLVSLAKALSSGYLPIGAILVSPEIAEVIHSQSSKLGSFSHGFTYSGSPVPCAVALEALKIYKERNIVAVVNKIAPRFQDGLKAFSDSPIIGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQL5</accession>
    <name>A0A392MQL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">21 kDa protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010688</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the PMEI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016898">
        <property type="protein sequence ID" value="MCH89787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004857">
        <property type="term" value="F:enzyme inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15800">
        <property type="entry name" value="PMEI-like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.40">
        <property type="entry name" value="Invertase/pectin methylesterase inhibitor family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035513">
        <property type="entry name" value="Invertase/methylesterase_inhib"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052421">
        <property type="entry name" value="PCW_Enzyme_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006501">
        <property type="entry name" value="Pectinesterase_inhib_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01614">
        <property type="entry name" value="PME_inhib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36710:SF18">
        <property type="entry name" value="PECTINESTERASE INHIBITOR 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36710">
        <property type="entry name" value="PECTINESTERASE INHIBITOR-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04043">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00856">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101148">
        <property type="entry name" value="Plant invertase/pectin methylesterase inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Pectinesterase inhibitor" evidence="5">
        <location>
            <begin position="95"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="10"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="28"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="50"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00038471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="244" mass="26366" checksum="C568A567CAB5F860" modified="2018-12-05" version="1">MAHTFMDTPSFESRPTSRSHSAHPPTYSSEAPSEAPSESTVDFPEIPNFASESGQDPFGDSSSFKDAISDILRGSLFGNSMPMPTQPHHISESKQSNLGLDQICMHTDYPDVCMTTIKPLVSQNFEIIDVLAAAIKVCSIEVKLTTTKVARHAANNPEVANAVAECQEQYKIASENLQRAMKAVQSRDLGTITVMLSAVMADVSTCESAFEDIRKSPSSDMTKTDGLVTITVSNSLSIANLVPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRE3</accession>
    <name>A0A392MRE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015737">
        <property type="protein sequence ID" value="MCH89228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47270:SF3">
        <property type="entry name" value="HYPOTETICAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47270">
        <property type="entry name" value="PROTEIN MLP1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="40"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="118"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="383"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="493" mass="57222" checksum="614BDB44E5AD4A4F" modified="2018-12-05" version="1" fragment="single">EAKVYHLEQEKLQLEEHMEDRLKEKTHEMKHNRSDIEHENGQLSMRVSVLEAQVRDLTNEQESQLSELENARNKASRLQEKVMEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGENQQLQITIENLEEECNSFEKLNGYLSQQKLDLKERCFLMGARLRESGERFADFCGRVGLLENKFALMMEDIASKEKNLTSDMDGILDENRKHMDQGQSLLNQMQMEKMVEVQNLKLEVENLSLKLSAAYGEKERIASNALLEVSTLRADKAKLESAFGEAQSKVILSKTEINMMQSEYEQKLKDITTELSYFKIKTETLMAEHEKLSELVEDYKSRELKFKSTISSLESKLTVTEYGRQQYMEEYGNLKVQLQQTCQLENEIMALKSELNASNTEKERLKASLCLKSELCEDLKAENTSFERKISSLEKDASELEHCKRTRASLEERLTQLKNELIARDTRFVQEKSDLQKKAQALEEELKLIKEQKRNHVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRS5</accession>
    <name>A0A392MRS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysosomal pro-X carboxypeptidase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010253</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015988">
        <property type="protein sequence ID" value="MCH89358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005773">
        <property type="term" value="C:vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070008">
        <property type="term" value="F:serine-type exopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008758">
        <property type="entry name" value="Peptidase_S28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010:SF38">
        <property type="entry name" value="LYSOSOMAL PRO-X CARBOXYPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010">
        <property type="entry name" value="PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05577">
        <property type="entry name" value="Peptidase_S28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21754" checksum="5CAC2D36E697A66E" modified="2018-12-05" version="1" fragment="single">VCRRIDEGPAGTSILDRIYEGANVYYNYTGEAKCFELDDDPHGLDGWNWQACTEMVMPMSCSKESSMFPPYEYNYSSFEEDCFKNFGVKPRPKWITTEFGGRNIHIALKNFGSNIIFSNGLLDPWSGGSVLQNISESIVSLVTEEGAHHIDLRASTENDPDWLVEQRAIEIKLIQGWISDYHQSYKAVFDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT69</accession>
    <name>A0A392MT69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SH3 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017804">
        <property type="protein sequence ID" value="MCH90199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053296">
        <property type="entry name" value="TSET_member_tstB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48151">
        <property type="entry name" value="SH3 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48151:SF3">
        <property type="entry name" value="SH3 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14178" checksum="0B61568537B7EAED" modified="2018-12-05" version="1" fragment="single">MGKSRAAAFALGIQDVDEGAHVNTFADASDLNDSDESTHPESIRRTSSVSNGTAGRDTIAGMLASLMEVVRTTVACECVYVRAMVIKALIWMQGPFDSFDELESIIASELSDPAWSAGLLNDVLLTLHARFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTU7</accession>
    <name>A0A392MTU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Extensin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0011634</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018901">
        <property type="protein sequence ID" value="MCH90712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.58.1040:FF:000001">
        <property type="entry name" value="Glucan endo-1,3-beta-glucosidase 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012946">
        <property type="entry name" value="X8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044788">
        <property type="entry name" value="X8_dom_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31044">
        <property type="entry name" value="BETA-1,3 GLUCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31044:SF28">
        <property type="entry name" value="CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07983">
        <property type="entry name" value="X8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00768">
        <property type="entry name" value="X8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="X8" evidence="10">
        <location>
            <begin position="133"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="89"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="114"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH90712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="22854" checksum="51F08D55E5716D47" modified="2018-12-05" version="1" fragment="single">PPTPTTITPSPPENFPTPTPETVPSPPSNIPGSPAPIFNPPIIYPGPPESSTSPPYFEPAPPYYEPTPPFIPSPTGGSGTIPSPPSTFPSPSGGTVPSPSGGTVPSPTVFQPPVVYPPPSVPPPPNTAPQSTLWCVAKASVPDPIIEEAMNYACWSGADCTSIQPNGPCFQPDSVYAHASYAFNSYWQRTKGSGGTCEFGGTAILVSVDPSYDGCHFIYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU31</accession>
    <name>A0A392MU31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Leucine-rich repeat receptor-like protein kinase TDR-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0011385</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018378">
        <property type="protein sequence ID" value="MCH90469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033612">
        <property type="term" value="F:receptor serine/threonine kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:001006">
        <property type="entry name" value="Leucine-rich repeat receptor-like protein kinase TDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050647">
        <property type="entry name" value="Plant_LRR-RLKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056:SF26">
        <property type="entry name" value="MDIS1-INTERACTING RECEPTOR LIKE KINASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="128"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH90469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="323" mass="35837" checksum="76D1BE8E788E78BC" modified="2018-12-05" version="1">MTGKIPEELASIPILEIVDLSNNKFNGPIPEKFGSSSSLHLLNVSFNNISGSIPNAKTFKLMNNSAFVGNSELCGAPLRPCFERVGIFGSKGTWKLTHILLLSVGLLIILLVLAFGILHFRKGFKSQWKMVSFVGLPRFTANDVLTSFSIVATEHTHIPSPSTIVTKTVLPTGITVLVKKIEWENRSINGVSEFIMRLGNARHKNLIRLLGFCHNQQLVYLLYDYLPNGNLAEKIGMKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKSSNIVFDENMEPHLAEFGFKQVLQLRNGASPTKTMQETGMTKVCAASVRMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU89</accession>
    <name>A0A392MU89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017921">
        <property type="protein sequence ID" value="MCH90248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="123"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17028" checksum="CD421F225063A77A" modified="2018-12-05" version="1" fragment="single">AILNRIGAANWVPTTHTSDVAPGLGKFIYMVGTKTAFDFEQHPGVRVDGETAKTRKSPLCLHHKLFGETHVPDIVGISGTSASAPMTRKDVIAALKAHCKDLDEKKLQFERMIQALDAEEVAEVAVQGEHEEGEEEEEENVEDADQDENTDSSDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV87</accession>
    <name>A0A392MV87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cathepsin 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020389">
        <property type="protein sequence ID" value="MCH91417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase C1A papain C-terminal" evidence="1">
        <location>
            <begin position="71"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="16019" checksum="D66C1442E7DE6686" modified="2018-12-05" version="1" fragment="single">IIHNGCVLEASCRYTGKLQPPRPLWEREVRLRFEASIPIKLENIETYIRRKREPVMASLDWIDEIMDELGDEAEGHGLLIVGFGPDYWLVQYSHETDWGNGGYAKFTRAQVHGRFLINDGWAAAGIKYEDLNRNAYHAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVB1</accession>
    <name>A0A392MVB1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">40S ribosomal protein S7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011879</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein eS7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019402">
        <property type="protein sequence ID" value="MCH90955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000554">
        <property type="entry name" value="Ribosomal_eS7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11278">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11278:SF29">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN ES7Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01251">
        <property type="entry name" value="Ribosomal_S7e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19532" checksum="154079BD04733744" modified="2018-12-05" version="1" fragment="single">MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQIDVSGNRKAVLIQVPYRLRKGFRKIHXXXXXXXXXXXSGKDVIIIATRRIVRPPKKGSAAQRPRSRTLXXXXXXXXXXXXXXAEIVGKRTRYRIDGSKIMKVFLDPKERNSTEYKLETFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXV7</accession>
    <name>A0A392MXV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022585">
        <property type="protein sequence ID" value="MCH92386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF15">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="147"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="241" mass="28188" checksum="D72D2231B74A2A7B" modified="2018-12-05" version="1" fragment="single">MNLSLLSKWRRRLLQNHDTGLWKEVLVAKYGIHIVHEVVWSNFVSPAYASLWWKDIRDLEMDKWLGDSPLSVQFPRLYSLSLHKFATVMEMKVASFGNIREWNLRWRRNLFQWEEEEVSHLVVLLDNVVLSIEEDSWRWVLDPEGCFSVKSSFVMFSREMVEGINLSFLETSIFRKIWKSPAPSKVVVFSWQLLHNRDPTKDNLISRGVIQQGIGCNCVWCGEVQESANHLSLHCKVVLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYY5</accession>
    <name>A0A392MYY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-isopropylmalate synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0013700</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023386">
        <property type="protein sequence ID" value="MCH92757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:L-leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050073">
        <property type="entry name" value="2-IPM_HCS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10277:SF74">
        <property type="entry name" value="2-ISOPROPYLMALATE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10277">
        <property type="entry name" value="HOMOCITRATE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="3">
        <location>
            <begin position="33"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21110" checksum="8384FF910176F4BF" modified="2018-12-05" version="1">MEDSPFISNSKSSNGTNGNLLYIPNQIPIPNYVRILDTTLRDGEQSPGAAMSCKQKLDIARLLLRLRVDVIEAGFPSASNDDFMAVKMIAQDVGNDVDNDGYVPVIGGMCRCNEKDIAITWEAVKHAKRPRICTFLATSPIHMEYKLRKTKDQVLQIARDTVKFARSLGCCDIQFGAEDAVRLHNIILLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZD0</accession>
    <name>A0A392MZD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Auxilin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020776">
        <property type="protein sequence ID" value="MCH91604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031982">
        <property type="term" value="C:vesicle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030276">
        <property type="term" value="F:clathrin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072318">
        <property type="term" value="P:clathrin coat disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072583">
        <property type="term" value="P:clathrin-dependent endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172">
        <property type="entry name" value="AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23172:SF19">
        <property type="entry name" value="J DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="17"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14369" checksum="509EECFA9E2A4327" modified="2018-12-05" version="1" fragment="single">MYQQKNENDLESFFSMSGRANSAPRPPRSSSSDSVFDAQFQPDVNRKSTSASSNIKKASSSSNFGDDLSSIFGASPSAGEFQHVEGESEERRKARLERLQRAQERATKALAEKNERDLQIQREQAERH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZE8</accession>
    <name>A0A392MZE8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0013226</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Complex I functions in the transfer of electrons from NADH to the respiratory chain. Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Mitochondrion inner membrane</location>
            <topology evidence="1 11">Single-pass membrane protein</topology>
            <orientation evidence="1 11">Matrix side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the complex I NDUFA13 subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022368">
        <property type="protein sequence ID" value="MCH92289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045271">
        <property type="term" value="C:respiratory chain complex I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009346">
        <property type="entry name" value="GRIM-19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12966:SF0">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12966">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06212">
        <property type="entry name" value="GRIM-19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0249">Electron transport</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="6 11" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11" id="KW-0813">Transport</keyword>
    <keyword evidence="12" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH92289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8588" checksum="8399C0CDAB453F26" modified="2018-12-05" version="1">MTEALIRKKPGMASVKDMPLLQDGPPPGGFAPVRFARRIPNTGPSALAIFLTTFGAFSWGMYQVGQGKNIGFEGTVVDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N139</accession>
    <name>A0A392N139_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Synaptotagmin-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022124">
        <property type="protein sequence ID" value="MCH92204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N139"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00030">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045050">
        <property type="entry name" value="Synaptotagmin_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10774">
        <property type="entry name" value="EXTENDED SYNAPTOTAGMIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10774:SF62">
        <property type="entry name" value="SYNAPTOTAGMIN-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00360">
        <property type="entry name" value="C2DOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="41"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15543" checksum="A2BAB4FE636B0B43" modified="2018-12-05" version="1" fragment="single">MEKPHVDFGMAISGGDIMSIPGLYRFVQETIKKQVASLYLWPQTLEIPVLDESTVAIKKPVGILHVNVVRAVKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTIKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1X6</accession>
    <name>A0A392N1X6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Dof zinc finger protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0014524</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8 9">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025254">
        <property type="protein sequence ID" value="MCH93572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1X6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045174">
        <property type="entry name" value="Dof"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003851">
        <property type="entry name" value="Znf_Dof"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31992:SF191">
        <property type="entry name" value="DOF ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31992">
        <property type="entry name" value="DOF ZINC FINGER PROTEIN DOF1.4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02701">
        <property type="entry name" value="Zn_ribbon_Dof"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50884">
        <property type="entry name" value="ZF_DOF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 8 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 9" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3 9" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 8 9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Dof-type" evidence="11">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="TIR" evidence="10">
        <location>
            <begin position="92"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU369094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH93572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="260" mass="29338" checksum="195FCEE50BADC6FF" modified="2018-12-05" version="1">MTDKARTANMPMPEAPLKCPHCESTNTKFVYFNNYDLSQPRHFCKTCRWYWTRGEALRNVPVGGALSKSSNNGNSIKSPAILSNTVADPTMKRYDVYLSFCEEDSLSFVVGISTTLTSQHGLVVFLDTQRFESDDDDQRLRHSESTLNVIGDCKIVIIVLSKNYTNSRGCLDELEKITECCRTSDDLTVVPVFYDGVYSPNTRLQGDMYGEAFPDFLDRISMEETSEKEDKFMSWVAAISYNKAYIYSGSAYFGNALIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N231</accession>
    <name>A0A392N231_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024422">
        <property type="protein sequence ID" value="MCH93215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N231"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8615" checksum="FC67C36087511F98" modified="2018-12-05" version="1" fragment="single">TFFNDLFRFHAHALRKEPLVHNQGCSVLDISCLTHQGTLGSRCNSWKWDLSAEIKYGEEQTELADLYGEGADPWGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2G5</accession>
    <name>A0A392N2G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD kinase 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023212">
        <property type="protein sequence ID" value="MCH92684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2G5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD+ metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="entry name" value="Probable inorganic polyphosphate/atp-NAD kinase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275">
        <property type="entry name" value="NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275:SF32">
        <property type="entry name" value="NAD_NADH KINASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20143">
        <property type="entry name" value="NAD_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="NAD kinase/diacylglycerol kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8090" checksum="D0F9E4D4BE2E43C7" modified="2018-12-05" version="1" fragment="single">MRLRCEIFRKGKPMPGKVFDILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIIATPTGSTAYSTAAGGSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5A5</accession>
    <name>A0A392N5A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015297</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027082">
        <property type="protein sequence ID" value="MCH94339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050823">
        <property type="entry name" value="Plant_Ser_Thr_Prot_Kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45621">
        <property type="entry name" value="OS01G0588500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="102"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16184" checksum="4788910E12E0EF85" modified="2018-12-05" version="1" fragment="single">MDPKLEGQYSEMGTKKAAALAYQCLSHRPKSRPTMSQVVKILEPLQDFDDIPIGPFVYTVPVDNNGGVKEKDQAKECETPKERKRENGHYRRNGHRHHPLKSPRSPNPQSQQQSRPQSQPSPRQQAQPSPRQQSQSSPRPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5K2</accession>
    <name>A0A392N5K2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cinnamoyl-CoA reductase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016053</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028913">
        <property type="protein sequence ID" value="MCH95080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050425">
        <property type="entry name" value="NAD(P)_dehydrat-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366">
        <property type="entry name" value="NAD DEPENDENT EPIMERASE/DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366:SF776">
        <property type="entry name" value="NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11783" checksum="0DF571BC3BAD1E7A" modified="2018-12-05" version="1" fragment="single">HRWIVDVRDLVDAILLAYENHEAEGRYICTSHAVTERDLVEKLKSIYPNYKYPTNYTEVNDYRMLSSKKLQSLGWKFRPLEETLIDSVKSYGEAELLQSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N645</accession>
    <name>A0A392N645_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016046</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028904">
        <property type="protein sequence ID" value="MCH95073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N645"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5406" checksum="DFE198CD10217E3D" modified="2018-12-05" version="1" fragment="single">MTRDPSDPNPYDPSSKTIRYGFAFVHPWTGPGGGFGPEPVRPGPLSTPTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N770</accession>
    <name>A0A392N770_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Myosin-15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0016571</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030190">
        <property type="protein sequence ID" value="MCH95591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N770"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140">
        <property type="entry name" value="MYOSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140:SF781">
        <property type="entry name" value="MYOSIN-15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0505">Motor protein</keyword>
    <keyword evidence="4" id="KW-0518">Myosin</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Myosin motor" evidence="5">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH95591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="21211" checksum="45D962B1EF7B6BEA" modified="2018-12-05" version="1" fragment="single">FEQFCINFANEKLQQHFNEHVFKMEQEEYKKEEIEWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHQTFSTKLFQHFLSHTRFGKEKFSETDFTVSHYAGKVTYHTNTFLDKNRDYVVLEHCNVLSSSKCPFVKGLFPSLPEESSRSSYKFSSVASRFKVFISITFCVLLNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8V0</accession>
    <name>A0A392N8V0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0016544</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030134">
        <property type="protein sequence ID" value="MCH95565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8V0"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="NPH3" evidence="3">
        <location>
            <begin position="47"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11586" checksum="22AABD860AAACB5F" modified="2018-12-05" version="1" fragment="single">KLVSKCIDAIAYIACKESQLCTSGRSDSGSEGVMSSSLSSQQRPVVDWWAEDLTVLRIDIFQRVLIAMMARGFKQFAIGPILMLYAQKSLRGLVRSLTKKIEML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9I9</accession>
    <name>A0A392N9I9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Early nodulin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0017456</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the early nodulin-like (ENODL) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032398">
        <property type="protein sequence ID" value="MCH96470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9I9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11019">
        <property type="entry name" value="OsENODL1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.420:FF:000069">
        <property type="entry name" value="Early nodulin-like protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041846">
        <property type="entry name" value="ENL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039391">
        <property type="entry name" value="Phytocyanin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003245">
        <property type="entry name" value="Phytocyanin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021">
        <property type="entry name" value="BLUE COPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021:SF197">
        <property type="entry name" value="EARLY NODULIN-LIKE PROTEIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02298">
        <property type="entry name" value="Cu_bind_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51485">
        <property type="entry name" value="PHYTOCYANIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Phytocyanin" evidence="10">
        <location>
            <begin position="5"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00035011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH96470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="18312" checksum="65B56B4150F821F6" modified="2018-12-05" version="1" fragment="single">FSAAKELLVGGKIDAWKVPSSEEDSLNRWAEKSRFNVGDHLVWKYDGGKDSVLQVNKEDYANCNISNPIEEYKDGNTKVKLDRSGPFYFISGAKGHCEKGQKLTVVVISPRRRYRGVSPAPSPAVLEYSGVSPALSPAELEQGPAVAPTSSAPVLQTGLVMVMGLLAIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9Z8</accession>
    <name>A0A392N9Z8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Purple acid phosphatase</fullName>
            <ecNumber evidence="6">3.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0017665</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>a phosphate monoester + H2O = an alcohol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15017"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:67140"/>
            <dbReference type="EC" id="3.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the metallophosphoesterase superfamily. Purple acid phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.2" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010032943">
        <property type="protein sequence ID" value="MCH96676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003993">
        <property type="term" value="F:acid phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.380">
        <property type="entry name" value="Purple acid phosphatase-like, N-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039331">
        <property type="entry name" value="PAPs-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015914">
        <property type="entry name" value="PAPs_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008963">
        <property type="entry name" value="Purple_acid_Pase-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22953">
        <property type="entry name" value="ACID PHOSPHATASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22953:SF123">
        <property type="entry name" value="PURPLE ACID PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16656">
        <property type="entry name" value="Pur_ac_phosph_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49363">
        <property type="entry name" value="Purple acid phosphatase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Purple acid phosphatase N-terminal" evidence="8">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="7">
        <location>
            <begin position="83"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH96676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="24301" checksum="E16033BB248B00C3" modified="2018-12-05" version="1" fragment="single">MRITWITDDKHSPSFVEYGTLSGRYDSISEGEYTSYNYLLYSSGKIHHTVIGPLEYNAVYFYRCGGQGPEFELKTPPAQFPITFAVAGDLGQTGWTKSTLDHIDRCKYDVYLLPGDLSYADCMQHLWDSFGRLVEPLASARPWMVTQGNHEEENILLLTDEFVSYNSRWKMPFKESGSTSNLYYSFEVAGVHVIMLGSYADYDEYSEQYRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAI1</accession>
    <name>A0A392NAI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031887">
        <property type="protein sequence ID" value="MCH96249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5670" checksum="784D30A4A5C738C0" modified="2018-12-05" version="1" fragment="single">PFDLNLMAEIDYCGKLWQIPTTGNPSPFIAASAVRVAKPYDVLTAYPATRAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAY4</accession>
    <name>A0A392NAY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033854">
        <property type="protein sequence ID" value="MCH97006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40891">
        <property type="entry name" value="DUF295 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40891:SF1">
        <property type="entry name" value="DUF295 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KIB1-4 beta-propeller" evidence="1">
        <location>
            <begin position="13"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="23552" checksum="F42C7ABD4EA14FDF" modified="2018-12-05" version="1" fragment="single">MKGDAPKRGKFTIFEDPVYCNGCLYAGMETSLGFIVVVIEKLQPTGFSISINCTYDVMLTLIPPIIGGFEQIISKLIGFDNVLFRIEVLHALDRVVAVFVHKFDCSQRVWEKVENIKDKVFFISCYDSAFACQAINPETEGGRIYIALKNCNFVYIYNIEDRSLATSPHFSNLSKTLTCPMWFMPENRMTGPLKEEIGKAHQVRQRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB82</accession>
    <name>A0A392NB82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032423">
        <property type="protein sequence ID" value="MCH96479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="181" mass="20875" checksum="DEE77AB28BDF50A0" modified="2018-12-05" version="1">MNEGVGFGCECYFDNSSGERIYITSFTRAEMIDYLWDDIETSIHMMSDHVVLWYDPVICNQIMEEIKAIIDVNNTNYNPKLTFTFFVVESSLNEVETIQECGFRWIYQGKMASSTNLESHDQEEIVSSSNFQSNDQEEIVPPKYFESNDQEETIPSTNKSKQCVFGTPSSSLELDDTKDMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE22</accession>
    <name>A0A392NE22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative long-chain-alcohol O-fatty-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036755">
        <property type="protein sequence ID" value="MCH98117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008374">
        <property type="term" value="F:O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044851">
        <property type="entry name" value="Wax_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31595">
        <property type="entry name" value="LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31595:SF57">
        <property type="entry name" value="OS04G0481900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11305" checksum="86269C8CE9719246" modified="2018-12-05" version="1">MHELLFYHVTRVTPTWEVTCFFVLHGVCVVVEVGLMKWLGHKWKVHWAISGPITVAFVAATAAWLFFPPLLRDGADQRSIEELNNVVHCVMRKFQGRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHX1</accession>
    <name>A0A392NHX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0019083</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036671">
        <property type="protein sequence ID" value="MCH98084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050795">
        <property type="entry name" value="Asn_Synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772">
        <property type="entry name" value="ASPARAGINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772:SF45">
        <property type="entry name" value="ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="3">
        <location>
            <begin position="24"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH98084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12800" checksum="8030A55F413C6FF1" modified="2018-12-05" version="1" fragment="single">FRRWYNPPWYSEAIPSAPYDPLALRHAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASITSRYLATTKAAEQWGSKLHSFCVGLEGSPDLKAGKEVADYLGTVHHEFTFTVQVNNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIU4</accession>
    <name>A0A392NIU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039921">
        <property type="protein sequence ID" value="MCH99293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45523:SF2">
        <property type="entry name" value="OS02G0470600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45523">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8115" checksum="09BF3E6977EEA67B" modified="2018-12-05" version="1">MIMKDTTTACKITGYFMELASPHTEEAIKLVDKVGGFEWLIQKYEIDGATALKLDLALETPIIVVPRNSTSKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJM4</accession>
    <name>A0A392NJM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Vesicle-associated membrane protein 727-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001662</name>
        <name evidence="6" type="ORF">A2U01_0021027</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">10/8</strain>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endomembrane system</location>
            <topology evidence="3">Single-pass type IV membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the synaptobrevin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001609">
        <property type="protein sequence ID" value="MCH80886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010041978">
        <property type="protein sequence ID" value="MCI00013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd14824">
        <property type="entry name" value="Longin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.50">
        <property type="entry name" value="Longin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011012">
        <property type="entry name" value="Longin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010908">
        <property type="entry name" value="Longin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051097">
        <property type="entry name" value="Synaptobrevin-like_transport"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21136">
        <property type="entry name" value="SNARE PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21136:SF169">
        <property type="entry name" value="VESICLE-ASSOCIATED MEMBRANE PROTEIN 727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13774">
        <property type="entry name" value="Longin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64356">
        <property type="entry name" value="SNARE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50859">
        <property type="entry name" value="LONGIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Longin" evidence="4">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00046280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI00013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12692" checksum="2AF2AB16F42747F8" modified="2018-12-05" version="1" fragment="single">MDSVVFLVVADESIGRSVPFVFLERVKDDFKQRYGASIKSASDHPLADDDEDDDLFEDRFSIAYNLDREFGPSLKGHMQYCLTHPEEMSKLSKLKAQITEVKGIMMDNIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTF7</accession>
    <name>A0A392NTF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">U5 small nuclear ribonucleoprotein 40 kDa</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049311">
        <property type="protein sequence ID" value="MCI02500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47232">
        <property type="entry name" value="TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47232:SF1">
        <property type="entry name" value="TRANSDUCIN FAMILY PROTEIN _ WD-40 REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16100" checksum="C9961849F51C6099" modified="2018-12-05" version="1">MWRCNLNCSRIVVPTTSIAQIASAQVSFLEDKPHVKGAINSIVFLPWENTCFATAGTHSVMVWGENVEKKWKPEVLHKNFHTSAVMGVAGVQHKKIVLSVGQDRRILGYNAEEGKQDFMVQVDSKCLSILPNPRDFNLFMVQTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUJ4</accession>
    <name>A0A392NUJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein CHUP1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0023924</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050520">
        <property type="protein sequence ID" value="MCI02890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055028">
        <property type="term" value="C:cortical microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072699">
        <property type="term" value="P:protein localization to cortical microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040265">
        <property type="entry name" value="CHUP1/IPGA1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31342">
        <property type="entry name" value="PROTEIN CHUP1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31342:SF59">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="195"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="10"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="195"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="211"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="280"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI02890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="290" mass="33279" checksum="E9E5EC6097C6B74C" modified="2018-12-05" version="1" fragment="single">CKDAACDQDIKVKLQKLKVLELEVEELRKSNSRLHIEISDLTRRFDSTQIVANDANRESERLRKENEDLMKQIEQLQSNRCSDLEELVYMRWINACLRYELRNYQPPHSKTVAKDLSKSLSPNSEKKAKQLILEYADANGSGSIVDFDFDQWSSSQASSITDSGEYDDFSSVDNSSASRTNTKFFSKLKRLIQGKDSRHHDSRVSTRYQEDINSPRPSTSTGIDRRASFDFSTSMSMKERDRRYSSLSRDGSLPGFLGIQKSDLEKYAEALKDSSVNTKYQRRGRSTSFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXM9</accession>
    <name>A0A392NXM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055717">
        <property type="protein sequence ID" value="MCI04543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5507" checksum="59F2F0894D641D46" modified="2018-12-05" version="1" fragment="single">KNKTREFREKRSRPKGRVAAREGVNGGEMETTGDVFYDGEIVVMVEGGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2W5</accession>
    <name>A0A392P2W5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pinin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0027397</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061531">
        <property type="protein sequence ID" value="MCI06338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2W5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071013">
        <property type="term" value="C:catalytic step 2 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039853">
        <property type="entry name" value="Pinin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12707:SF0">
        <property type="entry name" value="PININ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12707">
        <property type="entry name" value="PINN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10727" checksum="4BCB4C6631DA3409" modified="2018-12-05" version="1" fragment="single">TRSFFFSLTPMGSTAAAEKTEQELRNEIDELLRQQREITERLRDPRGLRKGALSAPILRNNSIRQRPFIRPGGDNHDSEDQPPAKRRLSSAVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAN2</accession>
    <name>A0A392PAN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Xyloglucan galactosyltransferase KATAMARI1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0029577</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyltransferase 47 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069238">
        <property type="protein sequence ID" value="MCI08500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004263">
        <property type="entry name" value="Exostosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040911">
        <property type="entry name" value="Exostosin_GT47"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062">
        <property type="entry name" value="EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062:SF58">
        <property type="entry name" value="XYLOGLUCAN GALACTOSYLTRANSFERASE GT19-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03016">
        <property type="entry name" value="Exostosin_GT47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Exostosin GT47" evidence="6">
        <location>
            <begin position="37"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI08500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21856" checksum="38A5F40DDDAE4695" modified="2018-12-05" version="1" fragment="single">GGGGLSSAPNIRRSIRIECDNSSSVGNGNGNSVGYEKLCDTVDCSNGVCEHDPIRFMKPMLGANFCLQPPGDTPTRKSTFDAILAGCIPVFFEDLSAKLQYSWHLPENEFESFSVTIPKEDVVFRGLKILDVLQRIPRARVRRMREKVLELIPRVVYRKHNSSPGLRTKKDAFDLTIDGTLDKIRTRLQELDFVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCB0</accession>
    <name>A0A392PCB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070840">
        <property type="protein sequence ID" value="MCI08936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14778" checksum="83A52B993DB5779A" modified="2018-12-05" version="1">MLSFEEFIGQVNQVMGVPHDYNGWGYFDSENIFHWVDDDESYETMVNYVLLNDLVNGGGILLMADEEQQHEYHLVLTHLLNKITEDECRNRIVRAINFALSASRAKRELGLQMDAIGGRRYIIRRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE72</accession>
    <name>A0A392PE72_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Reticulon-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0030859</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Endoplasmic reticulum membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073801">
        <property type="protein sequence ID" value="MCI09770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009617">
        <property type="term" value="P:response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003388">
        <property type="entry name" value="Reticulon"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045064">
        <property type="entry name" value="Reticulon-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10994">
        <property type="entry name" value="RETICULON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10994:SF193">
        <property type="entry name" value="RETICULON-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02453">
        <property type="entry name" value="Reticulon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50845">
        <property type="entry name" value="RETICULON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="Reticulon" evidence="7">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI09770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12206" checksum="ACB328EC9F7E8757" modified="2018-12-05" version="1" fragment="single">ADVFLWRNKKISATTLGVATALWVLFELLEYHLLTLISHLAILALAVLFLWSNASTFINKSPPKIPQVHIPEEPVLQIASALRIELNRAFALLRDIASGRDLKKFLSVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKK0</accession>
    <name>A0A392PKK0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein mL43</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0032928</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mitochondrion-specific ribosomal protein mL43 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081655">
        <property type="protein sequence ID" value="MCI11826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005762">
        <property type="term" value="C:mitochondrial large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032543">
        <property type="term" value="P:mitochondrial translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039927">
        <property type="entry name" value="Ribosomal_mL43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007741">
        <property type="entry name" value="Ribosomal_mL43/mS25/NADH_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21396">
        <property type="entry name" value="39S RIBOSOMAL PROTEIN L43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21396:SF2">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN ML43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05047">
        <property type="entry name" value="L51_S25_CI-B8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00916">
        <property type="entry name" value="L51_S25_CI-B8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 8" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal protein/NADH dehydrogenase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00035188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI11826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10710" checksum="09CA9D437E14E446" modified="2018-12-05" version="1" fragment="single">AFMESHLPAFKEANPQLEVDTEMIRGQHPHLKAFYKNHNDRVVCVKNMDPEEILLHATRLRNALGRKVIKLRTRHVTKHPSVQGTWTTALKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZQ5</accession>
    <name>A0A392PZQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0037607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100995">
        <property type="protein sequence ID" value="MCI16465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="46"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="24816" checksum="0BD7487CDD786141" modified="2018-12-05" version="1" fragment="single">LWHQRYGHLSFKGINVLAQKEMVIGLPKLKEPNEKCTNCMKGKQQKEAVPKKSSWRASTKLELIHSDICGPINPESNGKKRYFITFTDDLSRKTWIYFMNEKSEALAMFVKFKAMXENESKHMIQCLRTXRGGEYTSTXFNEFCDVHGIKRQLTAAYTSHQNGVSERKNKTIMNMVRCMINEKNVPKTFWLEAVNWSVHILNRCPTFAVKDVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4G8</accession>
    <name>A0A392Q4G8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Calcium-dependent protein kinase 20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0039952</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111886">
        <property type="protein sequence ID" value="MCI18797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4G8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050205">
        <property type="entry name" value="CDPK_Ser/Thr_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24349">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI18797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6835" checksum="F95CBD3A2BAA8F51" modified="2018-12-05" version="1" fragment="single">MSITTGETFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVPPFWDGENAMSLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJB9</accession>
    <name>A0A392QJB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase 10 plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0038202</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">10/8</strain>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103682">
        <property type="protein sequence ID" value="MCI17055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010139369">
        <property type="protein sequence ID" value="MCI24059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI17055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI24059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5750" checksum="E6D2B29ABFC3C4D5" modified="2018-12-05" version="1" fragment="single">MTIAKDRVKPSPTPDSWKLPEIFATGVVIGTYLALVTVLFYWAVVETTFFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFF9</accession>
    <name>A0A392RFF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0056574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222529">
        <property type="protein sequence ID" value="MCI35353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8333" checksum="0148E4E7F2A9671E" modified="2018-12-05" version="1" fragment="single">GVAVVSFLWSGGGGWRFLVSFVFGGGGFGVVVAVTDLSWRDDGGCDCSELRGCGMWRCWSWHRRGVVDAVCDWLSTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWN6</accession>
    <name>A0A392LWN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000069">
        <property type="protein sequence ID" value="MCH79366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10239" checksum="09CC87B1BD9BB7BB" modified="2018-12-05" version="1">MMPTSHQPSCWYLHLELLPSSSVCTSLLHPTILRSNTRCTSTYSSLMKILPPATIGVLGSYTSVTVPSSAPGLYLFVLLKKRLLPTTLGFWDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWX1</accession>
    <name>A0A392LWX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000127">
        <property type="protein sequence ID" value="MCH79463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6899" checksum="F7000545496FC56C" modified="2018-12-05" version="1" fragment="single">AGPKGEKEPSKSLAAGKAKREAKGKAVTVAATVRDGLRAFYSDKNVPFAWRTTVRSPQLRLEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWZ2</accession>
    <name>A0A392LWZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000237</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000140">
        <property type="protein sequence ID" value="MCH79487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF486">
        <property type="entry name" value="RLK (RECEPTOR-LIKE KINASE) PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="24421" checksum="4F091EED1C773F08" modified="2018-12-05" version="1">MIGSLLYLTASRPDITFAVGVCARYQATPKMSHLVQVKRILKYVNATSDYGILYSKTENSTLVGYCDADWARSADDRKSTSGGCFFLGGNIISWFSKKQNCVSLSTAEAEYIAAGSSCSQLLWMKQMLKEYNVMQDVMTLFCDNMSAINISKNPVQHSRTKHIDIRHHFIRDLVEEKCVELKHVTTDEQLADIFTKALDANQFESLRGKLGICLHDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX54</accession>
    <name>A0A392LX54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000175">
        <property type="protein sequence ID" value="MCH79529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14527" checksum="019D27CC24F895C3" modified="2018-12-05" version="1">MIITASTNKFIFEADKSTMMCYVKETVPSSTQLIDTHLYIFPQRRQTVTGQKINFHWWCSKSSFNSHRSLESHRILASMRRLMDFCVDERQKCRGRLENEILMVAVNVGGVCHLGWLVGKVKQDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX75</accession>
    <name>A0A392LX75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutelin type-A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000173">
        <property type="protein sequence ID" value="MCH79528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7154" checksum="2666EFDE451E6A0A" modified="2018-12-05" version="1" fragment="single">MELDLTPKTAQPFFEGDGGGYYTWLSSQVPLLAKTNVCAGQFVLHPRGFAFPHYADSSKVGYVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXA1</accession>
    <name>A0A392LXA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000204">
        <property type="protein sequence ID" value="MCH79580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="93"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11440" checksum="EA030C6A300F168F" modified="2018-12-05" version="1">MDKRNSKNAVDGGKKSQRGNEVKKPVRRSARLKKPEVSKAEVIVLTSDSSDSXEIDPDYAEFLKTYKGDDEDSRSSSSAEGSQMTVESKRKPSVSSDVKSSSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ17</accession>
    <name>A0A392LZ17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000830">
        <property type="protein sequence ID" value="MCH80250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="19"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12509" checksum="0821D194F8D77D2D" modified="2018-12-05" version="1">MGENKEDTVKWLPDMQAGYSAGSCYAELCSRRVEFSQNSNLLDACNLVWKSAVPTNISVFDWRIFHDGLPTRMNLWQCGILRNPIFLMFGFKGNLESYLYLAGVASDFLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ52</accession>
    <name>A0A392LZ52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chaperone protein dnaJ 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000905">
        <property type="protein sequence ID" value="MCH80307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026894">
        <property type="entry name" value="DnaJ_X"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052423">
        <property type="entry name" value="EMIR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44094:SF17">
        <property type="entry name" value="CHAPERONE PROTEIN DNAJ 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44094">
        <property type="entry name" value="DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14308">
        <property type="entry name" value="DnaJ-X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNAJ-containing protein X-domain" evidence="1">
        <location>
            <begin position="25"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13915" checksum="0AF3FF2EB637F1E0" modified="2018-12-05" version="1">MEQKERWNDLFLRASFLLSYFPVVQKEREERLVEILKNRLNQYVQGNKEDFVNHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSRVTAATGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZJ1</accession>
    <name>A0A392LZJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">60S ribosomal protein L5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001163</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001011">
        <property type="protein sequence ID" value="MCH80395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00432">
        <property type="entry name" value="Ribosomal_L18_L5e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005485">
        <property type="entry name" value="Rbsml_uL18_euk_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057268">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23410:SF35">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL18Y-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23410">
        <property type="entry name" value="RIBOSOMAL PROTEIN L5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17144">
        <property type="entry name" value="Ribosomal_L5e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00058">
        <property type="entry name" value="RIBOSOMALL5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="28566" checksum="7FCC9DB13976BD79" modified="2018-12-05" version="1" fragment="single">MYREGPEGTPYHTMIIEGYVDAPVDVSLCLTWESPLYKKWWPQFIVPTFKVTASDCLQKVKTGEQIALAQKSKAYFKRYQVKFKRIREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVLAAAYAHELPQFGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATEEDYSVEPGESRRPFRALLDVGLVKTTTGNRVFGALKGALDIPHSDKRFAGFDKEKKELDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZN9</accession>
    <name>A0A392LZN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001213</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001064">
        <property type="protein sequence ID" value="MCH80445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="235"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="510"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="711"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="283"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="311"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="334"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="370"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="404"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="426"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="515"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="766" mass="85735" checksum="39A22560539AED45" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M083</accession>
    <name>A0A392M083_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001399">
        <property type="protein sequence ID" value="MCH80717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M083"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16737" checksum="6AFCC02C17658483" modified="2018-12-05" version="1">MDAKWGCGGSKPSLYGANGRKMGLWRFETVAIWCCHARIRDLSTTVATWGCGGSKPPLNTPEPLQIARFLVGKEIVNSYCNLWSGYHRETIFIEWRRPQEGWVKLICDGSQNDRLDLTGCGGLLRDSDGTWIKGYSQKLRVCDALHAKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0M6</accession>
    <name>A0A392M0M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Adenylosuccinate synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0001653</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001596">
        <property type="protein sequence ID" value="MCH80877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046040">
        <property type="term" value="P:IMP metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="entry name" value="Adenylosuccinate Synthetase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="entry name" value="Adenylosuccinate Synthetase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="ADENYLOSUCCINATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846:SF0">
        <property type="entry name" value="ADENYLOSUCCINATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH80877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="351" mass="38349" checksum="371727A9103033D0" modified="2018-12-05" version="1" fragment="single">MSISSLRFDSHAICTPQPQHPFTFHNPFCSTRNTVVCAAKPVAPPPTKLTAADPLASRIQSLSQVSGVLGCQWGEEGKGKLVDILANHFEIVARFQGGANAGHPKKRIYNAEGKNLALHLVPSGILNEDTLCVIGNGVAVHLPELCEEIDNLESNGVSCKGRILISDRAHLLFNFHQTMDILREDELSKYLFRTTKRGTGPCYSSKVNCNGIRVGDLRYMDTLPQKLDLLLSDAASRFKNYTYGPDVLRKEVEKYKRYAERLELYIADTVHVLNEAIAQKKKILVEAGQSTMLDMDFGTYPFVTSSSPSAGGICTGLGIGPRIVGDLVGVVKAYTTRVDSGPFPTEILGPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0P4</accession>
    <name>A0A392M0P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TIR-NBS-LRR RCT1 resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000916</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000741">
        <property type="protein sequence ID" value="MCH80154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0P4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF271">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="38"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="274"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="751"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="751" mass="85128" checksum="356488A72EE2762F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M149</accession>
    <name>A0A392M149_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000926">
        <property type="protein sequence ID" value="MCH80324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M149"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="46"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="71"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="127"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="20566" checksum="6603BEED7F7D1196" modified="2018-12-05" version="1" fragment="single">ICRRQFTSEMADNDNTKGGGRGTGRGINRCRKGRGTGTLSQSNIGQPTNPTTTQLATNTQLLHPTPHLSSKRGSGTTTSSQSNIGQTTNPSIYRITTHTELPYSTPHLSSKRDRGTTTSSQANIEQTTNPSTSRTTTHTELPYSTPSPPISPTPSLSHVPSAAASGDDPHVDSPPQIGSKSDGHIWIRPGPTKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1H7</accession>
    <name>A0A392M1H7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001084">
        <property type="protein sequence ID" value="MCH80464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1H7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="36065" checksum="3AFC243AFBA22950" modified="2018-12-05" version="1" fragment="single">MNNNGGFSSNILVLDRKNWDRWSALMKSLFGAQEVRDLAQNGYEDLKANPTEAQRLAFREAKKKDCKTLFYIQQNVKQVKLQSLRRKYEMIQMKEDQRIVVIQEAKDVKTMKIEEMQSSLEAHELMVIDRGAERSVQQALQAQTAKKEGNYKNSKKKGKSKANWSNNGKTKTDEKHRHFANECWFKKDQQNDEEAIVAQEWLTSFDSSKKTSIKLADSRKLVAEGQLVEKGFSMTMDGDSLKLLYAKKNLVLKSNLSKNRTYKKRQISGYVSPILRFQLQLQRAILRLRSLSFFSHMKNHGKNQISQEETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1X3</accession>
    <name>A0A392M1X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001246">
        <property type="protein sequence ID" value="MCH80604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF26">
        <property type="entry name" value="LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="1">
        <location>
            <begin position="20"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="530" mass="61329" checksum="DDE9370DBA3744B9" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2H1</accession>
    <name>A0A392M2H1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002326</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002416">
        <property type="protein sequence ID" value="MCH81537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2H1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="145" mass="15490" checksum="2C6CA2D90F69D54B" modified="2018-12-05" version="1">MVIQHECQGNFSNLDDSSALINAARFGKGVSSQKSSRVCTYCGMSNHIVDQCYKKHGLPPHLRKSSRANAAIEGGDDVTIAASTSNANPSISQAQFDKLMSLLHNSSLNQASGSASTNQVGSSMVNGHTSVNHQGSENQDDDWFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M347</accession>
    <name>A0A392M347_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002559</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002745">
        <property type="protein sequence ID" value="MCH81767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="529"/>
            <end position="731"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="731" mass="82603" checksum="447DED57AC9405D5" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3J9</accession>
    <name>A0A392M3J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002985">
        <property type="protein sequence ID" value="MCH81937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF35">
        <property type="entry name" value="DUF4219 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="281"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="417" mass="47023" checksum="FED5845F33A571F1" modified="2018-12-05" version="1" fragment="single">NTVFRPQSVTRHSLQARFRVLAQFAGIVSCLGLQSCAHCVFDASLLRQQLASRALMTGDGGFSKNILVLDSKNWDRWSALMKSLFGAQEQNVDSQHFEKIAKATKSKEAWDILENYHDGGAKVKKVKLQAYRRQYESLVMEEDQKVSDYFSKLLALVNQMQNCGETISYEMVVEKVLRSLTLSFDYIVVAIEYSKDTTTMKIEELQSALEAHEIKMLSRGSERVNQQALQAQLGKKDDGHFADECWYKKDQQEANVAEENDAKAVLMMATIGDESEKNEEWFLDSGCSNHMTPHREWLTSFDASKKTSIKLADSSKLAAEGTGKIVFKGKTGNTVIIEDVFYVPKMNCNLMSIGQLVQKGFSVTIEGNSLNLFDAKKNLVLKSALSKNRTYRCKISSDNVMCLSATMSEQVEEMWHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Y5</accession>
    <name>A0A392M3Y5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Villin-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002821</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003105">
        <property type="protein sequence ID" value="MCH82025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3Y5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051014">
        <property type="term" value="P:actin filament severing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11288">
        <property type="entry name" value="gelsolin_S5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11291">
        <property type="entry name" value="gelsolin_S6_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.20.10:FF:000001">
        <property type="entry name" value="Gelsolin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007123">
        <property type="entry name" value="Gelsolin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007122">
        <property type="entry name" value="Villin/Gelsolin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977:SF51">
        <property type="entry name" value="PROTEIN FLIGHTLESS-1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11977">
        <property type="entry name" value="VILLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00626">
        <property type="entry name" value="Gelsolin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00597">
        <property type="entry name" value="GELSOLIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00262">
        <property type="entry name" value="GEL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Gelsolin-like" evidence="2">
        <location>
            <begin position="89"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Gelsolin-like" evidence="2">
        <location>
            <begin position="191"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="31124" checksum="A0DE204C4A71C224" modified="2018-12-05" version="1" fragment="single">EDQKMATRLATTMSNSLKGRPVQGRIFDGKESPQFVALFQPMVVLKGGVSSGYKKLIADKGLPDETYTAESIALIRISGTSIHNNKTMQVDAVATSLNSTECFLLQSGSTIFNWHGNQSSIEQHQLAAKVAEFLRPGVALKHAKEGTETSAFWFAVGGKQSITSKKVTNDIVRDPHLFTLSFNKAGKLQEEEIYNFGQDDLLTEDILILDTHAEVFVWIGQNVDQKEKQNAFEIAQKYIDKAGSLEGLSPYVPLYKVTEGNEPCFFTTYFSWDHAKATVCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4C2</accession>
    <name>A0A392M4C2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003021</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003369">
        <property type="protein sequence ID" value="MCH82220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF178">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="283"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="66"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="323"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="363"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="24"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="80"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="378"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="449" mass="50922" checksum="35EB3F0517C96060" modified="2018-12-05" version="1">MNNNPHTMINHSQITKPETKNQKKTGNTNNQISTNNTQILTTPRNQINIPHNQILIIESQLPAETRKNSPNYIPHEDIPESSNARNQNPPQSNIPRSFLYSDNVIHEGLPACTHSIIGKIITAKPIHVGSIQNGLESIWGAPPGLKVQELGGKILQFFMNEPADIDRILYGNPWIFRNSWLVVKPWDRETDYHEIDFDHVPIWIQLWGLPPHCKTKQMGTSIGTLMGNVEASEFYEYPGKQVIIKIKVAININNPITSGIHVGNPTDGTSWVDYRYEKLPQVCFKCGMIGHTDKLCRNQALVLDTLAPLGPWIRSTQYGKRKMEDKDRKFYSNPSHAKNFGQYSPPVPSDLLEKLAAMRVNTAKANQTQHPQPKDANHSPQNIESYHGQDMQSQQEERNKKAHRLSYDQETTNHPTSDIVMKEQSPTIKRQKMEELPRVGTAKQASPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M543</accession>
    <name>A0A392M543_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Disease resistance protein At4g27190-like leucine-rich repeats domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002661</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002886">
        <property type="protein sequence ID" value="MCH81868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057135">
        <property type="entry name" value="At4g27190-like_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF187">
        <property type="entry name" value="AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23247">
        <property type="entry name" value="LRR_RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="2">
        <location>
            <begin position="150"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="31101" checksum="07E4F700FF96F15E" modified="2018-12-05" version="1" fragment="single">WNAELHKLLVLDCSKMELFRSARLEGEGEGSSTSINRQPLFSNLQLRSNPFQVIDVQPLRRSASVKIKFTANGRXPNLHDLTIAMCKSLEIFKTPKLQIREQLKTLILDRVSELKFIWSSWLNIVCKELYGLYVIRCPGLTKLFCFPPAVSFSHLKELYIQECHGLEYLFTSSVAKVLMHLEKIIIKESRSIKEIVGMEQDGTTSQGLKFERLYSVVLDSLSSLEYFYSGNDILQLPSLALVNIQHCPKMEVFSXKNGVSIAGRKFININRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5A7</accession>
    <name>A0A392M5A7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0003323</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003792">
        <property type="protein sequence ID" value="MCH82515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5A7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02120">
        <property type="entry name" value="PA_subtilisin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041469">
        <property type="entry name" value="Subtilisin-like_FN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17766">
        <property type="entry name" value="fn3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 11" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="9">
        <location>
            <begin position="18"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="Subtilisin-like protease fibronectin type-III" evidence="10">
        <location>
            <begin position="460"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF17766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH82515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="568" mass="61193" checksum="87349237E1DD3E6D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M618</accession>
    <name>A0A392M618_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0002647</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002868">
        <property type="protein sequence ID" value="MCH81854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M618"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000095">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase GSO1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48052:SF66">
        <property type="entry name" value="OS02G0610000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48052">
        <property type="entry name" value="UNNAMED PRODUCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00365">
        <property type="entry name" value="LRR_SD22"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="12">
        <location>
            <begin position="227"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH81854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="517" mass="56733" checksum="9C0FD522538297FA" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6G7</accession>
    <name>A0A392M6G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATPase family AAA domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002820</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003104">
        <property type="protein sequence ID" value="MCH82024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006334">
        <property type="term" value="P:nucleosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006337">
        <property type="term" value="P:nucleosome disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045815">
        <property type="term" value="P:transcription initiation-coupled chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000016">
        <property type="entry name" value="ATPase family AAA domain-containing protein 2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000061">
        <property type="entry name" value="ATPase family, AAA domain-containing 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045199">
        <property type="entry name" value="ATAD2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23069">
        <property type="entry name" value="AAA DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23069:SF0">
        <property type="entry name" value="TAT-BINDING HOMOLOG 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0103">Bromodomain</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="6">
        <location>
            <begin position="317"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="22"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="40"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="68"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="104"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="132"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="179"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="734" mass="80898" checksum="00B4E3CDC75E7AF9" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M752</accession>
    <name>A0A392M752_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0003873</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004588">
        <property type="protein sequence ID" value="MCH83059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M752"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="12">
        <location>
            <begin position="328"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="722"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH83059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="722" mass="82152" checksum="935CDB82A167EBA8" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7B2</accession>
    <name>A0A392M7B2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">peptidylprolyl isomerase</fullName>
            <ecNumber evidence="2 5">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003847</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="2 5"/>
    <dbReference type="EMBL" id="LXQA010004550">
        <property type="protein sequence ID" value="MCH83033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7B2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43811">
        <property type="entry name" value="FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43811:SF17">
        <property type="entry name" value="PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-3, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54534">
        <property type="entry name" value="FKBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="6">
        <location>
            <begin position="26"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH83033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13445" checksum="CD2E22C27ADC210E" modified="2018-12-05" version="1" fragment="single">VPMVTTESGLQYKDIKVGQGPNPPVGFQVAANYVAMVPSGQIFDSSLEKGQLYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGPLAFPKGLNSAPGRPRVAPNSPVVFDVSLEYVPGLEVDDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA90</accession>
    <name>A0A392MA90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication protein A 70 kDa dna-binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006695">
        <property type="protein sequence ID" value="MCH84356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="483" mass="54717" checksum="E957FD731804D279" modified="2018-12-05" version="1">MHPDKAPGPDGFNPAFYQHFWELCGNDIFEAATEWLERGYFPSSLNETNICLIPKCDNPVSMKDMRPISLCNVLYKMVSKLLANRLKECLDKCVSEEQSAFVEGRSILDNALIAIEVIHALKRRTRGRKGELALKIDISKAYDKVDWGFMCGMLERLGFANKWIHWMMLCVSSVNYSVLVNFEKIGPVYPGRGLRQGDPLSPYLFILVTEGLTALIKKSVSRGDLHGVKICRGAPMVSHLLFADYCFLFCRANLAETNHMMQILTTYEEASGQEINLTKSEVFFSRNLSIAAQEDLSRIMGVRHVLGTGNYLGLPSMIGRKKRDIFAYVKDRVWKRINSWRGRALSKAGKEVMIKSVLQAIPSYVMSVYLLPESTIKEIERMMNSFWWGGGTNNKGIRWLAWDRMAYPKALGGMGFKDLHTFNLAMIAKQGWNIMTKPHTLVAKLFKARWIVGNGSSIKAMSEPWLRGKEGAWISSPQGSWKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAE2</accession>
    <name>A0A392MAE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase ATM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004780">
        <property type="protein sequence ID" value="MCH83184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:DNA damage response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038980">
        <property type="entry name" value="ATM_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37079:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE ATM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17656" checksum="258ADA8C5FDDF1F5" modified="2018-12-05" version="1" fragment="single">MVVTHSNFGVPLVVYSKGKTINAKEVLAAGPQPQPIMETVLITLMHVALHSEKVELEAVFMICVVSAIDPCQRELVCAVLDNLSKELQYMTRMKYLEELLGSLLFCWVACGVSLAALVELEREKCRATTEWAEVGKREMSCYHQRVKYTPWWLGHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAP4</accession>
    <name>A0A392MAP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lysine-specific histone demethylase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006381">
        <property type="protein sequence ID" value="MCH84175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="404" mass="44368" checksum="114E8BB3DA88886B" modified="2018-12-05" version="1" fragment="single">MGKTVKEKVCVHTSRDIRAIASQLVNVWLELFRKEKASNGGLKLPRQATTVELSKRKSLKDSASGKPPLSIHQGAVENKGGLLNPLSAGSNSPSNTHAKKLHXKQGRQQSACDSRHDVCSSRSQGSIDKIPTKEENNHYAMSEEEKAAIAAAEAARTKAIAAAEAYASAEARCSTLLQLPKIPSFHKFARREQYSQNDECDSRKKLSGGFFGRQDCVSEIDSRNCRVRDWSVDFSTACVNLDNSKIPVDNLSQRSHSNEIASHLNFGERSGESAAVDSNLYTKAWIDTAGDGVVKDHLAIERWQDQAAEADSYFSNQSIHLKDEEDSNAYSRLPSWKHDGVANESSVSQVTVNKEEASKGHSRGADHIKQAVVDYVGSLLLPLYKARKLDKDGYKAIMKKSATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBG6</accession>
    <name>A0A392MBG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0004410</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005433">
        <property type="protein sequence ID" value="MCH83584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="147"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH83584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28800" checksum="471019DF0F1F6902" modified="2018-12-05" version="1">MTKLIYPTTVVLNPTPALRDHLPDLLLLPHRPHKTPTQPTHLQTLVLPPLNGYHLLNFKPDENAVSVITAMNGFNPDIAVAEPHSLPPSRDTDHQIPITQNPDPVNIRPYRYPQFQKHEIEQQIHQMLSQGLIQPSSSAFSSPVLLVRKKDGSWRFYVDYRALNSITIKDRFPIPTIDELLDELYGTRWYSKLDLRSGYHQIRMASDDVHKTAFRTHLGHYEFLVMPFGLCNAPSTFQSTMNTLFQQYLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBX0</accession>
    <name>A0A392MBX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007072">
        <property type="protein sequence ID" value="MCH84595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31115">
        <property type="entry name" value="OS05G0107300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31115:SF2">
        <property type="entry name" value="OS05G0107300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="195"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="361" mass="38831" checksum="277C0BA3F44DB111" modified="2018-12-05" version="1" fragment="single">PDLAGGGCEAIDQNIIQLQKGHFQQLTKKREYFMKFIQAVEEXXXXEPQALEQVAMDKLVELAYKKKLATRGTIAAKYGLPKISRPVALSFMKRTLARCRMFEETGKSCFQDPAFKDILFATPVHDNYAVSTVAETRPLAQNSQQECAPSGSFPCREQNVLGNSDHPSDLDFARIGPILNGGKKGEVLLDEIGASASLGPTSTPGNSIPGGATRKRRGRGRNRGASGRNSVKKGGRSSASNTRSEPKTKPNAAQLSTSAKASLGKLVENTNSEQQLACGSNQLISSDNRKSTNNFAVETEVPLDLASMPELDSIVGAGKDLDSWLNIDVDALQDDDMDALPDDDAVGGFDIPMDDLSTILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDU3</accession>
    <name>A0A392MDU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006546</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008970">
        <property type="protein sequence ID" value="MCH85697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5013" checksum="1CF50C670B470EE5" modified="2018-12-05" version="1">MGACVRNEEGQFITTMSAHINAVRTPAEAWSLQQGSCGWLCLAIEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME14</accession>
    <name>A0A392ME14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009085">
        <property type="protein sequence ID" value="MCH85757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8189" checksum="41B217D9EFDA31A8" modified="2018-12-05" version="1" fragment="single">MCIPHQILEGKPALPEMKDIWDKKVELSDFIELDLVGWIARIESLGVKTQENLDAYWDSFSTAMIRRFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEI6</accession>
    <name>A0A392MEI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin-like-specific protease ESD4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008765">
        <property type="protein sequence ID" value="MCH85573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4511" checksum="3333AC128F10E9E9" modified="2018-12-05" version="1" fragment="single">ARYFVDEVKDKTGKDIDVSTWDREFVDDLPEQENGFVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG01</accession>
    <name>A0A392MG01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009557">
        <property type="protein sequence ID" value="MCH86005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="115"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="411" mass="46890" checksum="C87E72CFF5D9D620" modified="2018-12-05" version="1" fragment="single">NGLEQVILDLQITDLALICKSCLLSSCIWRCNDNSMLNLIPILLGTEKILHQHGLVIIISIEFGYSWLNKIRVFCHGRIAERLGKMNETTKFNEKREVEKYKARLVAKGYSQQHASKGWNIFQLDVKSAFLHGELSENVYVDQPLGYQKEGKNKVYKLRKALYGLKQAPRAWYSKIESYFVQEKFEKCHHEHTLFVKQSGQGKILIVSLYVDDLIYTGNDEEMFERFKSSMKNKFAMNDLGKMRYFLGVEVCSPIVPGNKLNKDEGGKPIDARMYRQLIGSLMYFLATRPDLAFSTRGGDCELEGWSNSDYAGDIDDRKSTSGYVFMYATGVVSWSSKKQAIVTLSTTEAEFVAATSCACQGVWLRRILEQLKQVQVNGTVIFCDNTSSIKLSKNPVMHGRCKHIDVRYHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGJ0</accession>
    <name>A0A392MGJ0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007049</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009903">
        <property type="protein sequence ID" value="MCH86195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="17896" checksum="A1418168A9944C6B" modified="2018-12-05" version="1" fragment="single">QLFDGHNGSAAAIYAKENLLNNVLSAIPTDLNRDEWVKALPRALVAGFVKTDKDFQQKAQSSGTTVTLVIIEGWVITVASVGDSRCILEPSEGGLHYLSADHRLDTNEEERVRITSCGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGJ4</accession>
    <name>A0A392MGJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010641">
        <property type="protein sequence ID" value="MCH86622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4382" checksum="F873454EAEA696F9" modified="2018-12-05" version="1" fragment="single">MHGVHYYTSHVFHPTIENARCTLLPSETRGGLKSIWEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGR3</accession>
    <name>A0A392MGR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007139</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010066">
        <property type="protein sequence ID" value="MCH86285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF57">
        <property type="entry name" value="OS02G0478300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="2">
        <location>
            <begin position="52"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="417" mass="48164" checksum="3786C78D7DD487BC" modified="2018-12-05" version="1">MYEDHEQVTVDITRRFSIVTFSNNVLRSNSNPGIRAIFVFDKEELPEYFIDSLSMNFKLIKVLNFEHSLLKRVPENLGNLFHLKYLNLSHTEVTVLPRTIGNLLNLETLDLRQTKVRELPMEIKKLTKLRLLTVYYKYDEGNYSTLNDTTGVQMQEGIGCLKSLQNLYFLEADHGGIDCMQELKKLKQVKKLGIRCVQSAQGNALCAAIGEMNFLESLNITAKAEEEILDLDFVSAPRYLRVINIKARLTRFPDWIPELEYLVKLMLGFSNFEHDPLDSLRKLPHLSRLNLWDDAFSGDSLHFKVGGFPKLKELDLTRLNKLSSISIDREALLALEHFRCHDNPQLKVLPKDLQNLENLKYLEFADMPAELVDSIDPNKDGPCHRIINHIPRVQVREKVESSFPKYELRPIPTQLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHL9</accession>
    <name>A0A392MHL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Metacaspase-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006584</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C14B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009039">
        <property type="protein sequence ID" value="MCH85734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004197">
        <property type="term" value="F:cysteine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029030">
        <property type="entry name" value="Caspase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050452">
        <property type="entry name" value="Metacaspase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011600">
        <property type="entry name" value="Pept_C14_caspase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48104:SF30">
        <property type="entry name" value="METACASPASE-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48104">
        <property type="entry name" value="METACASPASE-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00656">
        <property type="entry name" value="Peptidase_C14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52129">
        <property type="entry name" value="Caspase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase C14 caspase" evidence="3">
        <location>
            <begin position="27"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="28036" checksum="CCCA4ED8ABDE4E3E" modified="2018-12-05" version="1">MHRRSARASSSRVPSKGSSSSSSKQPKKRALLIGLKYGQPDMIYTYDDCTKVKDLIETHFQFLEDNIKTFLDKRTREKPNQSPILTSVRLEREIKAFVEATNTGDISLLFISAHGVHPEKDPTYDRIGFIGADYKVVPVERITKAMSELNKDNKFIAVIDVCWGGGFAEMYNEKITMFLASKTMEESAGGGNGSYFTNCFADFMEKHHMLSSAELIERLKEKMRQMGCEQTPRLLSNKDNANLPVFTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHW4</accession>
    <name>A0A392MHW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Auxin-induced SAUR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ARG7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011504">
        <property type="protein sequence ID" value="MCH87090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009733">
        <property type="term" value="P:response to auxin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003676">
        <property type="entry name" value="SAUR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31929">
        <property type="entry name" value="SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02519">
        <property type="entry name" value="Auxin_inducible"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10428" checksum="85B9DED9FD4DDD4F" modified="2018-12-05" version="1">MGFRFPAIIRIASFNANRTVSKDDVPKGYLAVYVGDKQKRYVIPVSYLNQPLFQELLSQAEEEFGYDHPTGGLTIPCTEDVFQHITSRFNGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHX6</accession>
    <name>A0A392MHX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Unconventional myosin-Va-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010697">
        <property type="protein sequence ID" value="MCH86649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="24196" checksum="4BB1A99BA83840C1" modified="2018-12-05" version="1" fragment="single">QELVNSLEEKTKDQIPAHFTENEVISKLTEDKEHLKDQVKSLEQKVDETEKKYEECSRQSEDRMNQIIETESKMIELKTKLQKLEEKFSDLESENQIFRKQALLSSTSQRMTDKVAAIPAPVKTLNSAETVRRSHMERHQESVEALFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSAIEVLHGITCNIFTGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJA3</accession>
    <name>A0A392MJA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative AC transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008311</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012200">
        <property type="protein sequence ID" value="MCH87441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025525">
        <property type="entry name" value="hAT-like_transposase_RNase-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272">
        <property type="entry name" value="BED FINGER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272:SF15">
        <property type="entry name" value="ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14372">
        <property type="entry name" value="hAT-like_RNase-H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="hAT-like transposase RNase-H fold" evidence="2">
        <location>
            <begin position="2"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="140"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="27864" checksum="CBA201CA5B92BD9E" modified="2018-12-05" version="1">MELTNAAFSQDPFLSSLILPLLKNFDQYWRESCLILAVAVAMDPRHKMKLVESIFAKIFGENAKQWITIVENGLHELFIEYNTEMLHFTAIDGDEGDDIMLKTQPYEGPVDGSLFVDEGGLSDFEFSISDFNCMQQFKSEMDEYLEEPLVSEVKEFDILNWWRENRTKYPTLSRTASDILSMSISTVSADSVFDTEIRKMDDYRNSLDSRTLEALICAKDWFQHKSIPKNGSSTLEKMKVQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMB9</accession>
    <name>A0A392MMB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Albumin-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014605">
        <property type="protein sequence ID" value="MCH88662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.110.10.10">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036375">
        <property type="entry name" value="Hemopexin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018487">
        <property type="entry name" value="Hemopexin-like_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00120">
        <property type="entry name" value="HX"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50923">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51642">
        <property type="entry name" value="HEMOPEXIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="Hemopexin" evidence="1">
        <location>
            <begin position="118"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="repeat" description="Hemopexin" evidence="1">
        <location>
            <begin position="170"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25546" checksum="4A7CF338304E4CC2" modified="2018-12-05" version="1">MSVSGYIDAAFRSSYKNEVYIFMKNEYVLLDYAPGSTNDKILNGPLRIHEGFPSLIGTPFAECGIDCAFDTDDNEAFIFSTKLCALIDYAPRTKNAKILSGPKKIKHIFPFLENTVFASGIDAAFKSSFSKEAYLFKGDTYALINYDSKKLIHVQKITDGFHGLRGTVFASGIDAAFASHQRGHEAYFFKGDLYALVDFAPHTTDDFLIGGKVKLILPNWPSLRRILPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMJ3</accession>
    <name>A0A392MMJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009617</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014719">
        <property type="protein sequence ID" value="MCH88726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="123"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="412" mass="46481" checksum="64D750087F583084" modified="2018-12-05" version="1" fragment="single">MKKKAKKARGKEEEIQNQSIANTEGFVLEVVLQNSNGGGFNQPSRSSVQCSLAPAVLSGGASDVGSQEVPSQVRGESVRAGGQVVDRDTSEAYHIIDIQEDLGMTFKGVGNEDVTRVKEFERRKIRELVQAEHLDFLALQETKMDVIPNNFVQRLWGNSDCGWVYLPVVGNSGGILSIWNKVKASLVFSFIGEGFVGVCLQFVGELRCCYIVNVYAKCNLRAKHRLWSDILMSKRGFGDGLWCVVGDFNSVRDCHERRGVGVRSVGGRSTEMVEFDNFLNDLELVDMPLIGRSFTWFHPNGVSMSRLDRVLISSSWFDVWGNPNVWVLARDVADHCPLVLRYSSLDWGPKPFRFNNFWLGNREFKEVITKAWESQHFEGWMGFILKERLKGLKGVIKEWSGRTFGEVEHTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMZ0</accession>
    <name>A0A392MMZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AFG1-family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008889</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013326">
        <property type="protein sequence ID" value="MCH88008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005654">
        <property type="entry name" value="ATPase_AFG1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169:SF6">
        <property type="entry name" value="AFG1-LIKE ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169">
        <property type="entry name" value="ATPASE N2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03969">
        <property type="entry name" value="AFG1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017395813" evidence="3">
        <location>
            <begin position="19"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9623" checksum="9F5FDA8B48676484" modified="2018-12-05" version="1" fragment="single">DVFAIVALSGILSRLLSSGTIIVATSNRAPKDLNEAGMVPEFFQNLLSNLEKHCEKVLVGSEIDYRRFIAQRSVNRVSANLPFITFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNC3</accession>
    <name>A0A392MNC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloalkane dehalogenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014674">
        <property type="protein sequence ID" value="MCH88703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6081" checksum="B50192D44AA38511" modified="2018-12-05" version="1" fragment="single">YVLKNEKADVYRLPYLASSGPGFAVLAAARKANFKGTFNEIAEGFATNRLVSVSSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNS7</accession>
    <name>A0A392MNS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF246 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015667">
        <property type="protein sequence ID" value="MCH89192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741:SF46">
        <property type="entry name" value="O-FUCOSYLTRANSFERASE 27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741">
        <property type="entry name" value="OS02G0726500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="150"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="23481" checksum="1B1ED69E87CF6A5F" modified="2018-12-05" version="1">MELRTNAHKLLWEAIDYAVCVEADVFIPGFDRDGKGHSNFASLVMGHRLYQSAASKTFRPNRKEAAKFVDEIRDHMYQANRTWLKSVRRHLRKTLLDGIIEASSKSKPLSFLSHPIPECSCLRHDSFEASKNSSIPLSLGVTHQCPAWMDTGSVSQSKDKENDDDGDDDDSVSGLFFKQSGGNNEGEAEVNTKEENQFEDQEELEGGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPL3</accession>
    <name>A0A392MPL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sodium-coupled neutral amino acid transporter 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0010346</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016173">
        <property type="protein sequence ID" value="MCH89450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031090">
        <property type="term" value="C:organelle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF571">
        <property type="entry name" value="TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="32"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="8">
        <location>
            <begin position="20"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH89450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13154" checksum="FBF469DDA8861CFB" modified="2018-12-05" version="1" fragment="single">MCDVLSGTTSSGSHHFGVLEGWFGEHWSTGRTFVLLVTTLLVFTPLGFFKRIDSLRYTSGLAVALAIVFLVITAGITFVKLFNGSIESPRLLPNITDITSIWNLFTAVPVLVTAFVCHYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR03</accession>
    <name>A0A392MR03_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">TF-B3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010592</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016669">
        <property type="protein sequence ID" value="MCH89692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="210" mass="24992" checksum="8B81C6946204C852" modified="2018-12-05" version="1" fragment="single">METYRDYLDVTSIGGFRTIYFIKQKFGEVDPDFVHQFGDQLPEKWRIMDYRFDEHFVTFNKDESHPLLMDGWHEMREVFDLHQNEEIQFAYYGKDVFGIMGSKRFETEDQLPNFHSRCVTPGTCHRFQVDLTRENIRNPYFDIWNAFAIFVRKSNFNVLTACCDNGTKTDLEVAIHENPFKMTAFGPDWFGFCRKNDFRAGDVLCFKFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR89</accession>
    <name>A0A392MR89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chaperone protein ClpB 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017275">
        <property type="protein sequence ID" value="MCH89951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058954">
        <property type="entry name" value="AAA_lid_SMAX1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051650">
        <property type="entry name" value="SL_signaling_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572">
        <property type="entry name" value="CHAPERONE PROTEIN CLPD, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572:SF49">
        <property type="entry name" value="PROTEIN SMAX1-LIKE 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26587">
        <property type="entry name" value="AAA_lid_SMAX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="93"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="SMAX1-like AAA+ ATPase lid" evidence="2">
        <location>
            <begin position="343"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF26587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="440" mass="49818" checksum="31C9E69E6E8FB719" modified="2018-12-05" version="1">MEPPKETPNQFSSSFNLDEENIQKLPSQSSSCLTFDFCRQVDARNPKILFEALSKEVSWQGEAIRAIVKTIVCGRTKRPEDHGANQRGDKWMNFVGPDRHGKKKIAVSLAELLYGSRENFTFVDLSSEEMKGCDVKFRGKTNLDFIVDECCKKPLSVVFIENVDKADIVAQSSLSQAIKTGKITDSKGREVSVNNAIFVFSFSGYQNSLIQTREPSNYPEERILRAKNGGIKIKVEHMVRDIRSQSISVANNSINVIPNLNFINKRKLISDNELHDPHLLLDTAKRAHTISNRLLDLNLPAEENEQKQTDEGKFEHVPTENQNLWLQDLYNQVDETVIFKPYDFDALADRVLKLVRSNFNKIIGSECALQIQTEVTDQLLAAAYASDRDMEVENWIEQVLCGGFTEVQRRFNLTASSIVKLTTCPEQEPGVHLPPRIVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRW8</accession>
    <name>A0A392MRW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017514">
        <property type="protein sequence ID" value="MCH90063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021788">
        <property type="entry name" value="CPP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372:SF10">
        <property type="entry name" value="OS03G0137300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11833">
        <property type="entry name" value="CPP1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9524" checksum="742500F74CC59F1B" modified="2018-12-05" version="1" fragment="single">MALLSENLTILTKGKATVITIGGLVAGAVVGSVVENWLQVDIVPFLGIHSPAAVVSEVIIFSQFLVSLYLRLTGKATVIYNHIAASVAVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSB6</accession>
    <name>A0A392MSB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Succinyl-CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011322</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018235">
        <property type="protein sequence ID" value="MCH90407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSB6"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042709">
        <property type="term" value="C:succinate-CoA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006104">
        <property type="term" value="P:succinyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000019">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815:SF10">
        <property type="entry name" value="SUCCINATE--COA LIGASE [GDP-FORMING] SUBUNIT BETA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="SUCCINYL-COA SYNTHETASE BETA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="ATP-grasp fold succinyl-CoA synthetase-type" evidence="4">
        <location>
            <begin position="25"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="15683" checksum="99F079C5D271BCEC" modified="2018-12-05" version="1">MVRGSLNKLLSVAGKWQTQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKAIKEAFPNQNELVVKSQILAGGRGLGTFTSGLKGGVHIVKTDQVEDIAGKMLGQILVTKQTGPQGKVVSKTDPAGSTGKLATKPIWFIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSJ9</accession>
    <name>A0A392MSJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017361">
        <property type="protein sequence ID" value="MCH89989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8677" checksum="34A65B8017FB7355" modified="2018-12-05" version="1">MCENHLPKAPVITEIIWQSPPLRWVKCNSDGASKGNPGLSACGCIFRDNQANNLGCFASNLGVSDAFSAELIGAITKERLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSU7</accession>
    <name>A0A392MSU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myosin-H heavy chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011503</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018640">
        <property type="protein sequence ID" value="MCH90587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002710">
        <property type="entry name" value="Dilute_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51126">
        <property type="entry name" value="DILUTE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dilute" evidence="2">
        <location>
            <begin position="136"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22361" checksum="A573D2EAF5C56966" modified="2018-12-05" version="1" fragment="single">MTMMSAALEEKISNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRVDSGHIGGEAKPPHLDMHSSSMNQRERESAEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQENNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSY5</accession>
    <name>A0A392MSY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017662">
        <property type="protein sequence ID" value="MCH90135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11395" checksum="EF1D09B2FA8B7A23" modified="2018-12-05" version="1">MLRRMRCGRDRNIVCRINIRVRRMALGGNKNVIIKNNGINGSRRCICVRQGMDGMVRPLKGWIMVLIGQNMLMIGHISRNENGLSVQIKQNNSFDTLLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTH5</accession>
    <name>A0A392MTH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0011740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019122">
        <property type="protein sequence ID" value="MCH90817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097363">
        <property type="term" value="F:protein O-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006493">
        <property type="term" value="P:protein O-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037919">
        <property type="entry name" value="OGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029489">
        <property type="entry name" value="OGT/SEC/SPY_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44366">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44366:SF1">
        <property type="entry name" value="UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13844">
        <property type="entry name" value="Glyco_transf_41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="O-GlcNAc transferase C-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH90817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14375" checksum="C0AC8F2E03A5B0EC" modified="2018-12-05" version="1" fragment="single">PLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLSTGLGEEMIVSSMKEYEERAVSLALNRPKLQALTDKLKAVRMTCPLFDTNRWVRNLDRAYFRMWNLHCSGQRPQHFKVTENDMECPYDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTU5</accession>
    <name>A0A392MTU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NAD-dependent epimerase/dehydratase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011900</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019443">
        <property type="protein sequence ID" value="MCH90976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43574">
        <property type="entry name" value="EPIMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11545" checksum="63FA5E036C0EDB2E" modified="2018-12-05" version="1" fragment="single">VYGDCDGKLVDEDYPTNPENELAKLRLTSEQGWSSLAHHLGFSPLIFRLGGIYGPGRSAVDTIIKQKPLSEGQKRRKHRKYTSRVHVEDICQALMATIYTPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTX1</accession>
    <name>A0A392MTX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Importin subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0011695</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the importin alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019022">
        <property type="protein sequence ID" value="MCH90773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23316">
        <property type="entry name" value="IMPORTIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="ARM" evidence="5">
        <location>
            <begin position="8"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH90773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14408" checksum="A90484026B2B34CD" modified="2018-12-05" version="1">MQAVIEAGLIVQLVSLLQNAEFEIKKEAAWAIKNATSRGSDEQIKYLVGQDCIKPLCDLLVCPDSDSTIISVCLEGLVNILNVGKRENSNLYASKIRGSEEEFKKIENLLNHDNPEICSWAAKLLKNFSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUB0</accession>
    <name>A0A392MUB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Death domain-associated protein 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019603">
        <property type="protein sequence ID" value="MCH91061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7008" checksum="502B8D38EC639C60" modified="2018-12-05" version="1" fragment="single">VELEPKKKKPKKSLYAKTTDTGVDPKVAAKRLNIDWDTAAEIEDVDTDDESDVPPVLVSSLLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUU7</accession>
    <name>A0A392MUU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Mitogen-activated protein kinase 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0012243</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020158">
        <property type="protein sequence ID" value="MCH91316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000578">
        <property type="entry name" value="Mitogen-activated protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050117">
        <property type="entry name" value="MAPK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24055">
        <property type="entry name" value="MITOGEN-ACTIVATED PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH91316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="18251" checksum="05E58DFF17554DD7" modified="2018-12-05" version="1">MLSGKPLFPGKNVVHQLDLMTDLLGTPPAESISRIRNEKARRYLSSMRKKQPVPFSKKFPNVDPLALNLLERLLAFDPKDRPSAEEALSDPYFHGLSNVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLSGGDQTSFMYPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXV8</accession>
    <name>A0A392MXV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein kinase EDR1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022502">
        <property type="protein sequence ID" value="MCH92350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050167">
        <property type="entry name" value="Ser_Thr_protein_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23257">
        <property type="entry name" value="SERINE-THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23257:SF813">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE EDR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12418" checksum="2F90EB31E3F9B6A3" modified="2018-12-05" version="1">MRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKPEWMAPEVLRNEPSNEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYL1</accession>
    <name>A0A392MYL1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Extensin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023029">
        <property type="protein sequence ID" value="MCH92601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005199">
        <property type="term" value="F:structural constituent of cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006706">
        <property type="entry name" value="Extensin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04554">
        <property type="entry name" value="Extensin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Extensin" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6157" checksum="21AF5354AEAC0F12" modified="2018-12-05" version="1" fragment="single">SPPPPSPISHPPYYYKSPPPPSSSPPPPYHYVSPPPPVKSPPPPSYIYASPPPPIYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZR8</accession>
    <name>A0A392MZR8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P-type Cu(+) transporter</fullName>
            <ecNumber evidence="2">7.2.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0013348</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.8" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010022633">
        <property type="protein sequence ID" value="MCH92409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140581">
        <property type="term" value="F:P-type monovalent copper transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000144">
        <property type="entry name" value="copper-transporting ATPase 1 isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF369">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0186">Copper</keyword>
    <keyword evidence="7" id="KW-0187">Copper transport</keyword>
    <keyword evidence="13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-1278">Translocase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH92409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14132" checksum="FFAE4624C9B29198" modified="2018-12-05" version="1" fragment="single">KEKVPDNEEQLAHWSLPDDDLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILSSLADATERTVIEGKTFRALSDSEREEIADSISVMGRSSPNDKLLLVQALRRKGHVVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0B5</accession>
    <name>A0A392N0B5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">U4/U6.U5 tri-snRNP-associated protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0013549</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SNU66/SART1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023054">
        <property type="protein sequence ID" value="MCH92609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0B5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046540">
        <property type="term" value="C:U4/U6 x U5 tri-snRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000481">
        <property type="term" value="P:maturation of 5S rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045292">
        <property type="term" value="P:mRNA cis splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005011">
        <property type="entry name" value="SNU66/SART1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14152">
        <property type="entry name" value="SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14152:SF5">
        <property type="entry name" value="U4_U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03343">
        <property type="entry name" value="SART-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12966" checksum="B30654A29D351277" modified="2018-12-05" version="1" fragment="single">MDVDRNDKDDSPVNGVYTPVFTDDDDEDDLRKSLEKARRLVLKKQEEKGGAYGPEAIALLVASSNPTVDDDHNSTVGGESRLVFTEMKEFVWDLNHIDQEACKPEEVPVEEKKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1G5</accession>
    <name>A0A392N1G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023503">
        <property type="protein sequence ID" value="MCH92808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1G5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF34">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22077" checksum="FAFDC6D58F59E832" modified="2018-12-05" version="1">MASDSSHYIANPYEPSKPLACITLSSVTKLLPTNYLNWKLQVEAFLDGFDLLKYTDRSFPAPPATISTTATPPVTTTNPAYQTRRRQDRLIYGAILTTLSNEVASLVSQTKTSHNLWTLLKNTYAKASRSHLKQLKERLRMASKGTQSITTYMHALKQTSDLLASLGSPVSVEDMTDHVLRDLDDGYRAVIDGANARDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1I8</accession>
    <name>A0A392N1I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013292</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022509">
        <property type="protein sequence ID" value="MCH92354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="75"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="15"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13791" checksum="15EEAE30BE194FF3" modified="2018-12-05" version="1">MKRLAMISFSEQEEVERAEAERKREEDASREMVSELLNVASDIMDFETSEPTSSRGKAILISEPEPIVLKLQEALVQQKSVTDQLKEDVQELKENQKDAKRTQEEMNAKLDSILALLSKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N287</accession>
    <name>A0A392N287_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013544</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023040">
        <property type="protein sequence ID" value="MCH92604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N287"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36892">
        <property type="entry name" value="OS01G0201800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36892:SF1">
        <property type="entry name" value="OS05G0518200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="26667" checksum="8BE79125E70A27D0" modified="2018-12-05" version="1" fragment="single">MVALQDIEPSVHRKKLGLNGLPVEKKPQFTNCDSVGKRQKADSPVRGILKNQLKHVSGKLSDGCKIRDGTEESDDENDHVLTSDRHVKFSYKDKIVGPKKTNSFDETMFSISSDALATSFVKDQSSGSDEESSSFEENRNYDHIALKIDKDKREEVCPITESKQFSSTLVHVTGPNFLKPCINEEKSNQLEQKSEILTKMAVYEDNNSQLFDGGNTTAVHFSPNAGISKPLSEVQEGQLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2R3</accession>
    <name>A0A392N2R3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator ATRX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014206</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024524">
        <property type="protein sequence ID" value="MCH93258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2R3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6704" checksum="4D0DBFC7C0D8D9D0" modified="2018-12-05" version="1" fragment="single">MEGITEDEVVDVESASGGSVNDDSDDEGSLPSEIDDKLHLEEPLTEAEIEDLISELLEVESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4M3</accession>
    <name>A0A392N4M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028106">
        <property type="protein sequence ID" value="MCH94770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5461" checksum="6C2160D688AEEEA5" modified="2018-12-05" version="1" fragment="single">VYGAENENILANEESSGRESGSIEPLRKSGQIPTRWSRSEKEIVRSKGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N559</accession>
    <name>A0A392N559_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015257</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026997">
        <property type="protein sequence ID" value="MCH94299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N559"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013101">
        <property type="entry name" value="LRR_PRU1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF16">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07723">
        <property type="entry name" value="LRR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="12"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="25698" checksum="FD8C721C13584068" modified="2018-12-05" version="1">MTRLLRLSFRWKDRLGSLPDEVLEHILSYLPTKDAVATSFLSKRWKSQSLWRSQQNLRFDDKTFRQFLYSVITNRDNTLPILSFHLNCRRHGFCYNTDFPTNVLTTKTLSVLRLKRVTLNQDDPCFDLPSLKVLHLESVAFTYYKHLMKLLSACPILEELKSKDLTVKMLTLDILISRDGLSISNLVRADIYDDLIDLDWLHNVHHLHIKQVSIYLYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6L4</accession>
    <name>A0A392N6L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chlorophyll a-b binding protein 6A chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029268">
        <property type="protein sequence ID" value="MCH95232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6992" checksum="FB3F4B4CF2E8EB04" modified="2018-12-05" version="1" fragment="single">MACNTLMSSAISAFPSLLSSSKSRFVTSTSFSSFASCNASSSKFSMTADNWMPGQPRPPYLDGSAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8E7</accession>
    <name>A0A392N8E7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027663">
        <property type="protein sequence ID" value="MCH94584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010031389">
        <property type="protein sequence ID" value="MCH96056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8E7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="186" mass="21382" checksum="D8465B4FEE2A837F" modified="2018-12-05" version="1">MKGSKTRNKCYLWILHNKRQPGLSVKEDNAKMSHKMVQHLCSSKEIESAQTNKEKGTLDIKGSRSPRVYESNIDQQDVIQDVRTSSAQEDPNIPMEESHEDLGTQDSEIDVELHVQDIVTPGKEMVAGKMISENIPLAPMDNVSFHSAESVQKWKYVYQRRIAHERELSQEALNCKEVMKFWKLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8J7</accession>
    <name>A0A392N8J7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Homeobox-leucine zipper protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">HD-ZIP protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Homeodomain transcription factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0016431</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Transcription factor.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8 9">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 10">Belongs to the HD-ZIP homeobox family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029859">
        <property type="protein sequence ID" value="MCH95455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8J7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00086">
        <property type="entry name" value="homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000159">
        <property type="entry name" value="Homeobox-leucine zipper protein HAT5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045224">
        <property type="entry name" value="HDZip_class_I_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017970">
        <property type="entry name" value="Homeobox_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000047">
        <property type="entry name" value="HTH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003106">
        <property type="entry name" value="Leu_zip_homeo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24326">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24326:SF497">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02183">
        <property type="entry name" value="HALZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00031">
        <property type="entry name" value="HTHREPRESSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00027">
        <property type="entry name" value="HOMEOBOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 8 9" id="KW-0371">Homeobox</keyword>
    <keyword evidence="6 8 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 10" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Homeobox" evidence="11">
        <location>
            <begin position="30"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="Homeobox" evidence="8">
        <location>
            <begin position="32"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU369038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH95455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="16831" checksum="441CB1B21BCE09FD" modified="2018-12-05" version="1" fragment="single">RSMMGMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIMKENEKLKSEVLIYMCSIKRIESLYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9D4</accession>
    <name>A0A392N9D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Putative transmembrane ascorbate ferrireductase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0016706</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030524">
        <property type="protein sequence ID" value="MCH95725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1770">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043205">
        <property type="entry name" value="CYB561/CYBRD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006593">
        <property type="entry name" value="Cyt_b561/ferric_Rdtase_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10106">
        <property type="entry name" value="CYTOCHROME B561-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10106:SF15">
        <property type="entry name" value="TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03188">
        <property type="entry name" value="Cytochrom_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00665">
        <property type="entry name" value="B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50939">
        <property type="entry name" value="CYTOCHROME_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome b561" evidence="12">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH95725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9727" checksum="5A69F12E7A9EAAB2" modified="2018-12-05" version="1" fragment="single">MALHFIAIVLGIVGICAVFKFHDMVNLVDVYSLHSWIGLGTFCLFGLQWLFGLTFMFQGTRQSRGAMAPWHIAGGRALFFMAICAALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9D5</accession>
    <name>A0A392N9D5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">DNA repair protein rhp26-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0017396</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SNF2/RAD54 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032255">
        <property type="protein sequence ID" value="MCH96410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9D5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22254">
        <property type="entry name" value="CSB_WHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058951">
        <property type="entry name" value="WHD_Rad26_CSB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25875">
        <property type="entry name" value="WHD_Rad26_CSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rad26/CSB-like winged helix DNA-binding" evidence="11">
        <location>
            <begin position="152"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="121"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="10">
        <location>
            <begin position="124"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="134"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF25875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH96410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="23595" checksum="C4066BC446BAA91C" modified="2018-12-05" version="1" fragment="single">NDEEKMRLDEQASQVAQRAAEALRQSRMIRSHESVSVPTWTGRSGTAGAPSSVRRKFGSTVKPQLLNNSKASDELPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGLEHQFGMSSSSTNQSRSINVRTTRAPENSSGFQPEVMIRKICTFFEQKGGRCSSDSIVQHFKDRIPSKDLALFKNMLKEIATLQKGSNGSHWVLKPDYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAF8</accession>
    <name>A0A392NAF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0017826</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033394">
        <property type="protein sequence ID" value="MCH96836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000307">
        <property type="term" value="C:cyclin-dependent protein kinase holoenzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008353">
        <property type="term" value="F:RNA polymerase II CTD heptapeptide repeat kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032968">
        <property type="term" value="P:positive regulation of transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000624">
        <property type="entry name" value="Mitogen-activated protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050108">
        <property type="entry name" value="CDK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24056">
        <property type="entry name" value="CELL DIVISION PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24056:SF565">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH96836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21321" checksum="1867157E6E7624E0" modified="2018-12-05" version="1" fragment="single">QVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALISEVPLEVHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC52</accession>
    <name>A0A392NC52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034955">
        <property type="protein sequence ID" value="MCH97436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8416" checksum="D9256B2B8601BF7F" modified="2018-12-05" version="1" fragment="single">GFVSKAQEPASGVTHLLIFEPLALLSCWDGIFVGCPSMGVLFQCCFSTVSAYPNVTALFDWFLFWIGLPLVAKGVTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEB8</accession>
    <name>A0A392NEB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018898</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036193">
        <property type="protein sequence ID" value="MCH97901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13460" checksum="9BBF28E833AA06B3" modified="2018-12-05" version="1" fragment="single">AEKVSAVSGGSQPQCDDTWKMKVTGSMPQSGGVLLLTKAKLFSDQLLAREMASFQSLHIHPPDPIEWNGQKWKDGCSRGVRKCIRDMGREQAGTCLSYAATTLLGCSVSEEYGFCWVDCRSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEE2</accession>
    <name>A0A392NEE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein always early 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0017926</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033688">
        <property type="protein sequence ID" value="MCH96934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017053">
        <property type="term" value="C:transcription repressor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051726">
        <property type="term" value="P:regulation of cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010561">
        <property type="entry name" value="LIN-9/ALY1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017884">
        <property type="entry name" value="SANT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21689">
        <property type="entry name" value="LIN-9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21689:SF2">
        <property type="entry name" value="PROTEIN LIN-9 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51293">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SANT" evidence="3">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="HTH myb-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH96934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5823" checksum="0896E20930983660" modified="2018-12-05" version="1" fragment="single">MLGSQWSKAELERFYEAYREYGKDWKKVALAVRNRTMEMVEALYTMNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEZ6</accession>
    <name>A0A392NEZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037414">
        <property type="protein sequence ID" value="MCH98370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11549" checksum="80AB2C84A327952C" modified="2018-12-05" version="1" fragment="single">YGSLIHENHDMGDFSAQDQLSLKDSAIGRTLRVSYLQHTFSSKALFGLVVQTMPSLNLRCRNSTFLSRRKPKDQALKWLIIEFKDQLSSKHKLLGEGSWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFQ3</accession>
    <name>A0A392NFQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Symplekin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037469">
        <property type="protein sequence ID" value="MCH98391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFQ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022075">
        <property type="entry name" value="Symplekin_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47184">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47184:SF2">
        <property type="entry name" value="SYMPLEKIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12295">
        <property type="entry name" value="Symplekin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="Symplekin C-terminal" evidence="2">
        <location>
            <begin position="2"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13965" checksum="97EBD1E47AB0523B" modified="2018-12-05" version="1" fragment="single">MQVTDACNACFEQRQTFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPTLVDFIMGILARLVKKQIWKYPKLWVGFLKCLQLTKPQSFGVLLQLPPPQLEVALNRIAVLKAPLIAHASQPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFU1</accession>
    <name>A0A392NFU1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">F-ATPase gamma subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0019058</name>
        <name evidence="18" type="ORF">A2U01_0019064</name>
    </gene>
    <organism evidence="17 19">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 19" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">10/8</strain>
            <strain evidence="19">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="16">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has four main subunits: a, b, b' and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Plastid</location>
            <location evidence="2">Chloroplast thylakoid membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036609">
        <property type="protein sequence ID" value="MCH98059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010036628">
        <property type="protein sequence ID" value="MCH98065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045259">
        <property type="term" value="C:proton-transporting ATP synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.80:FF:000003">
        <property type="entry name" value="ATP synthase gamma chain, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.80:FF:000004">
        <property type="entry name" value="ATP synthase gamma chain, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1380.10:FF:000004">
        <property type="entry name" value="ATP synthase gamma chain, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.80">
        <property type="entry name" value="ATP synthase, gamma subunit, helix hairpin domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="ATP SYNTHASE GAMMA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693:SF41">
        <property type="entry name" value="ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="ATP synthase (F1-ATPase), gamma subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-0139">CF(1)</keyword>
    <keyword evidence="5" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0934">Plastid</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0793">Thylakoid</keyword>
    <keyword evidence="8" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00031066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00038805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH98059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="MCH98065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="301" mass="33125" checksum="FABF725BF20D9111" modified="2018-12-05" version="1">MKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYSINEQLQTEDIDAPLTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAEARIAELKNLGVDYTIISVGKKGNTYFTRRPYIPVDRFLEGGTLPTAKDAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSNPIIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDAVRSKTIDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSACDNAVELKKNLSRVYNRERQAKITGEILEIVAGADALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG63</accession>
    <name>A0A392NG63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase epsilon subunit 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036952">
        <property type="protein sequence ID" value="MCH98179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008622">
        <property type="term" value="C:epsilon DNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042276">
        <property type="term" value="P:error-prone translesion synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024639">
        <property type="entry name" value="DNA_pol_e_bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016266">
        <property type="entry name" value="POLE2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12708:SF0">
        <property type="entry name" value="DNA POLYMERASE EPSILON SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12708">
        <property type="entry name" value="DNA POLYMERASE EPSILON SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12213">
        <property type="entry name" value="Dpoe2NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA polymerase epsilon subunit B N-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13255" checksum="41A8B377A72BED5F" modified="2018-12-05" version="1">MNAPTKKKIQKKCKIRGYNIKVEALDEILSFVTRFEPAEQDEAIDLVLDQLENESLKSTIIDVEPVQRVVNLLLEADAKEETTDNFASSSSSAIAVINVFDVPRYKYDAIRRNFYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMK0</accession>
    <name>A0A392NMK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021468</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043240">
        <property type="protein sequence ID" value="MCI00450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="308" mass="34750" checksum="F1F31A77746F0FBC" modified="2018-12-05" version="1" fragment="single">MHPDKAPGPDGFNPAFYQHFWNICGDDIFEATKEWLERGYFPSSLNETNICLVPKCENPVSMKDLRPISLCNVLYKMVSKLLANRLKGCLDRCVSEEQSAFVEGRSITDNALIAIEVIHALKRRTRGLKGEFALKIDISKAYDKVDWGFLRGMLERMGFANKWIHWMMLCVSSVTYSVLVNFEKVGPIFPGRGLRQGDPLSPYLFILVTEGLTTLIKNSVARGDLHGVKICRGAPLVSHLLFADDCFLFCRSTLEETNHLMSILKTYEEASGQEINMTKSEVFFSRNISMAAQEDLARIMGVRHVLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS31</accession>
    <name>A0A392NS31_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">beta-ketoacyl-[acyl-carrier-protein] synthase I</fullName>
            <ecNumber evidence="1">2.3.1.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.41" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010047457">
        <property type="protein sequence ID" value="MCI01886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712:SF332">
        <property type="entry name" value="3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="POLYKETIDE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4863" checksum="B78B4C8EB7DAE884" modified="2018-12-05" version="1" fragment="single">MGEGAGVLLLEELEHAKKRGATIYAXFLGGSFTCDAYHVTEPRPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWQ8</accession>
    <name>A0A392NWQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024576</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052491">
        <property type="protein sequence ID" value="MCI03536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13182" checksum="08FB132D2DEB2BB8" modified="2018-12-05" version="1">MQAAHMWNEWAMVQGILEDYLVRHKSSAHEQQNQTHSQQQLFSVHSSRLHTHSTNSDGKCMDSSCFPTHSSNFPTYSSNMYGFSSNKQTKQYNSGGIHIPDTLSAMLKRRNGMVCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXV1</accession>
    <name>A0A392NXV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protein gamma response 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0025331</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054861">
        <property type="protein sequence ID" value="MCI04284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010792">
        <property type="term" value="P:DNA double-strand break processing involved in repair via single-strand annealing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013882">
        <property type="entry name" value="Ctp1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033316">
        <property type="entry name" value="RBBP8-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15107:SF0">
        <property type="entry name" value="DNA ENDONUCLEASE ACTIVATOR CTP1 C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15107">
        <property type="entry name" value="RETINOBLASTOMA BINDING PROTEIN 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08573">
        <property type="entry name" value="SAE2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA endonuclease activator Ctp1 C-terminal" evidence="5">
        <location>
            <begin position="150"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="DNA endonuclease activator Ctp1 C-terminal" evidence="5">
        <location>
            <begin position="191"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="28"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="114"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="49"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="115"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="126"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI04284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="226" mass="25701" checksum="B21FABFAD79B02B6" modified="2018-12-05" version="1">MFSGLENRTPEVFVPVYDTNEVKEKALEDDKGAHLLPPPPSSFHGVQKCPTSTKLASVSGTKRPAPSWRQTRSHQSRAGHDLHDDFLDTPLENIRDNLNKDLNKEDLPQAIQEDISMDSSDDETQDLNARSSPQKKQSSITVANKRSFKYIEPVRKKAERDNLKGVDCKQCRKFYEAVLPNADGKDPDGKQNIRCEHHDGVSRHRYRYVPPMTPEGFWNIGFESEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYU0</accession>
    <name>A0A392NYU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CDPK-related kinase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0025689</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056065">
        <property type="protein sequence ID" value="MCI04642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050205">
        <property type="entry name" value="CDPK_Ser/Thr_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24349">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI04642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10676" checksum="75B66E6C7D469ED5" modified="2018-12-05" version="1" fragment="single">VLVRLCEGGELLDRILDRGGRYTEDDAKVILLQILNVVAFCHLQGVVHRDLKPENFLFVSKDEDAVLKVIDFGLSDFVRPDFLGYPHSCTMEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2P9</accession>
    <name>A0A392P2P9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Expansin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0026135</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Secreted</location>
            <location evidence="7">Cell wall</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the expansin family. Expansin A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057477">
        <property type="protein sequence ID" value="MCI05085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2P9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22274">
        <property type="entry name" value="DPBB_EXPA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.40.10:FF:000001">
        <property type="entry name" value="Expansin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="entry name" value="RlpA-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007118">
        <property type="entry name" value="Expan_Lol_pI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002963">
        <property type="entry name" value="Expansin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007112">
        <property type="entry name" value="Expansin/allergen_DPBB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009009">
        <property type="entry name" value="RlpA-like_DPBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31867">
        <property type="entry name" value="EXPANSIN-A15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03330">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01226">
        <property type="entry name" value="EXPANSIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01225">
        <property type="entry name" value="EXPANSNFAMLY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00837">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="Barwin-like endoglucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50842">
        <property type="entry name" value="EXPANSIN_EG45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0134">Cell wall</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0964">Secreted</keyword>
    <keyword evidence="4 7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017105910" description="Expansin" evidence="7">
        <location>
            <begin position="26"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Expansin-like EG45" evidence="8">
        <location>
            <begin position="46"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI05085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16416" checksum="7E50040087392D5D" modified="2018-12-05" version="1" fragment="single">MEKTIFICVIVLVGLFTSKLRVAASANWQHAHATFYGGSDASGTMGGACGYGNLYKDGYGIKTAALSTALFNDGKSCGGCYEIVCDARQVPQWCLRGTSIKITATNFCPPNFDLPSDDGGWCNPPRPHFDMSQPAFQMIAKYKAGIVPILYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBU8</accession>
    <name>A0A392PBU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Frigida-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0030012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070824">
        <property type="protein sequence ID" value="MCI08930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11700" checksum="E1B422C05AB298AE" modified="2018-12-05" version="1" fragment="single">FSRRNLAPLHPSPSPRYSAPLHYPSQTMMESSTAANPYAATYGTSITQSPAGIGITQQHYSYPVDNLGPSSYLSNSSYAGQTSYGLYDYGSAAPPTYPYTVDQTNYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE62</accession>
    <name>A0A392PE62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Kinesin motor domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0030849</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. KIN-12 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073772">
        <property type="protein sequence ID" value="MCI09760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044986">
        <property type="entry name" value="KIF15/KIN-12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37739:SF18">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIN-12C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37739">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIN-12D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0493">Microtubule</keyword>
    <keyword evidence="5" id="KW-0505">Motor protein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Kinesin motor" evidence="8">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00034488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI09760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9808" checksum="603A5BDD87FE56CA" modified="2018-12-05" version="1" fragment="single">MTLVDLAHGKPRHVPYRDSRLTFLLQDSLGGNSKTMIIANVSPSICSANETLSTLKFAQRAKLIQNNAKVNEDASGDISALQWQIQQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEY1</accession>
    <name>A0A392PEY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0031121</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074756">
        <property type="protein sequence ID" value="MCI10030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009742">
        <property type="term" value="P:brassinosteroid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045845">
        <property type="entry name" value="BSK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058209">
        <property type="entry name" value="TPR_BSK1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45863">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE BSK5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45863:SF22">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE BSK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25575">
        <property type="entry name" value="TPR_BSK1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Serine/threonine-protein kinase BSK1-like TPR repeats" evidence="9">
        <location>
            <begin position="23"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF25575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI10030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11642" checksum="F4CB12899FD740C9" modified="2018-12-05" version="1">MLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDXAFRDKDFKTAIDNYSQVQFSTCLKCSMIVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKH2</accession>
    <name>A0A392PKH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Calcium-dependent protein kinase 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0032898</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081545">
        <property type="protein sequence ID" value="MCI11796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000003">
        <property type="entry name" value="Calmodulin A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050145">
        <property type="entry name" value="Centrin_CML-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23050">
        <property type="entry name" value="CALCIUM BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="31"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI11796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10595" checksum="C7D0E3BE3AB54821" modified="2018-12-05" version="1">MFELFQADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNVSHLHLCHTFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGE7</accession>
    <name>A0A392QGE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0044653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136290">
        <property type="protein sequence ID" value="MCI23473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17891" checksum="29309FAD2957DC80" modified="2018-12-05" version="1" fragment="single">MDKLSHLIIEAVEGGNWQPIKAGRSGPFISHLMFADDLLLFGKATEVNMQIITDTLEKFCQLSGKLVSIEKTSVLFSKNVPRDLREVLLQQSGFREANSLGKYLGIPLMGRAPRHGDFEHLVDKVRSKLSGWKTTNLSFAGRVTLAKSVIQAIPIYSMMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQL9</accession>
    <name>A0A392UQL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010948563">
        <property type="protein sequence ID" value="MCI78338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6034" checksum="38010352F7A6D00C" modified="2018-12-05" version="1" fragment="single">SPPLERVLVNSIDELEEEGDHEIKLCLRELESSRVDESPKMEELVLNVQEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQT9</accession>
    <name>A0A392UQT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010948775">
        <property type="protein sequence ID" value="MCI78346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2677" checksum="A5A1FBE62A45BFF8" modified="2018-12-05" version="1" fragment="single">VAKKWEALSPADGAFLQVHRIVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWH6</accession>
    <name>A0A392UWH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952689">
        <property type="protein sequence ID" value="MCI78530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4585" checksum="FCEEF0559E3869F7" modified="2018-12-05" version="1" fragment="single">MVDSSFDGCVMLNTDGASKYSGSAGCGGLIHGTDVEWLGGFSKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWM3</accession>
    <name>A0A392UWM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rootletin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0099850</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010953909">
        <property type="protein sequence ID" value="MCI78580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010119">
        <property type="term" value="P:regulation of stomatal movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039640">
        <property type="entry name" value="SCAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032009">
        <property type="entry name" value="SCAB_CC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31172:SF14">
        <property type="entry name" value="CYCLIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31172">
        <property type="entry name" value="STOMATAL CLOSURE-RELATED ACTIN-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16712">
        <property type="entry name" value="SCAB_CC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Stomatal closure-related actin-binding protein coiled-coil" evidence="2">
        <location>
            <begin position="9"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="22"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI78580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6138" checksum="C600D8E39FDA72C6" modified="2018-12-05" version="1" fragment="single">MLRVRIHFQASEDAKKLVDEERAFARSEIDNARAAVQRVEESLQEHERVSQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX14</accession>
    <name>A0A392UX14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099991</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010957213">
        <property type="protein sequence ID" value="MCI78720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6730" checksum="F326A2704000978B" modified="2018-12-05" version="1" fragment="single">APRGNPVFREFCRMNPPTFEGKYEPTEASEWLFRIEDMLEDLECTPAEKVTFATHFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWW5</accession>
    <name>A0A392LWW5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000111">
        <property type="protein sequence ID" value="MCH79438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWW5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="277"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="277"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="875" mass="100306" checksum="C37B55CDA83BDAC3" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWY1</accession>
    <name>A0A392LWY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000209</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000124">
        <property type="protein sequence ID" value="MCH79460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14529">
        <property type="entry name" value="Exo_endo_phos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="3">
        <location>
            <begin position="438"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="778"/>
            <end position="799"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="244"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="781"/>
            <end position="799"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH79460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="799" mass="92331" checksum="5AE9F7EFE086ACEF" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX51</accession>
    <name>A0A392LX51_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000281</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010000175">
        <property type="protein sequence ID" value="MCH79530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18809">
        <property type="entry name" value="SF1_C_RecD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002884">
        <property type="entry name" value="ATP-dependent DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 5" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="2"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="561"/>
            <end position="742"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="4">
        <location>
            <begin position="856"/>
            <end position="885"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH79530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1002" mass="113701" checksum="5394EAC9421650E0" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXI8</accession>
    <name>A0A392LXI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000423</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000271">
        <property type="protein sequence ID" value="MCH79670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7041" checksum="6D894AF817C2A9F3" modified="2018-12-05" version="1">MPSPAVVHARLPEPDDKHHIAAARYLEHDSDAQLPSQSVSGSGLQHRPYEGTPGSTAVADAGLCNPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXR3</accession>
    <name>A0A392LXR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Formin-like protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0000499</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the formin-like family. Class-II subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000333">
        <property type="protein sequence ID" value="MCH79743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2220">
        <property type="entry name" value="Formin, FH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015425">
        <property type="entry name" value="FH2_Formin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042201">
        <property type="entry name" value="FH2_Formin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051144">
        <property type="entry name" value="Formin_homology_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014020">
        <property type="entry name" value="Tensin_C2-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45733">
        <property type="entry name" value="FORMIN-J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45733:SF20">
        <property type="entry name" value="FORMIN-LIKE PROTEIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02181">
        <property type="entry name" value="FH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10409">
        <property type="entry name" value="PTEN_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01326">
        <property type="entry name" value="PTEN_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101447">
        <property type="entry name" value="Formin homology 2 domain (FH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51182">
        <property type="entry name" value="C2_TENSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51444">
        <property type="entry name" value="FH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2 tensin-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="FH2" evidence="5">
        <location>
            <begin position="518"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="229"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="574"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="249"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="277"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="303"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="353"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="400"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="411"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="431"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="451"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="464"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="621"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH79743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="621" mass="66943" checksum="7DA0580271641B2E" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXW6</accession>
    <name>A0A392LXW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000357">
        <property type="protein sequence ID" value="MCH79776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11070" checksum="BD2C219CCD0289DC" modified="2018-12-05" version="1" fragment="single">CCDAEFSEDQRLKNIDRVEGDDPTHGEDRECCHEEEMQSDVEADAQVKTTQERKLLKRYTVEGLVVTSDVEVSAFVENADDKMIKTCGIVVGITTDCPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZE9</accession>
    <name>A0A392LZE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001027">
        <property type="protein sequence ID" value="MCH80412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057135">
        <property type="entry name" value="At4g27190-like_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF145">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23247">
        <property type="entry name" value="LRR_RPS2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="2">
        <location>
            <begin position="81"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="2">
        <location>
            <begin position="450"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="599" mass="68125" checksum="2604A4732D216674" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZR7</accession>
    <name>A0A392LZR7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001165">
        <property type="protein sequence ID" value="MCH80532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="33"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="24128" checksum="81C45A152AA2EAD9" modified="2018-12-05" version="1">MKIMLHNDEAAKLEVWRNAMDQEMESIERNNTLLDVKSAFFYGELVEDVYVKQPLGYHKEENDKVYKLKKALYGLRQTSRAWYSKIKSYFGNKLTRDENGKVVDATKYKQIVGCLMYLLATRPDLAFFVCLIAKYMERSTEMHLASTKRVLRYLNGTMSLEILYKKATMDPQGWSDFDYVGDLDDRKSTSDYVFMFGSSGISWSSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M134</accession>
    <name>A0A392M134_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0001820</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001805">
        <property type="protein sequence ID" value="MCH81042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M134"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000590">
        <property type="entry name" value="PR5-like receptor kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000178">
        <property type="entry name" value="serine/threonine-protein kinase PBS1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045874">
        <property type="entry name" value="LRK10/LRL21-25-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27009">
        <property type="entry name" value="RUST RESISTANCE KINASE LR10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-0675">Receptor</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="14">
        <location>
            <begin position="149"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH81042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="458" mass="51471" checksum="712F65458010D31C" modified="2018-12-05" version="1">MTTCSIYASNSDESVVELDLESCTKIFEVSRNFSAMDLRSNQLSLSWPIPNCTVCTAKGKKCRWNNNATKGADTECFVCKRKTIQIPKSVILATAGSIILGLVTIAFIKIYLHFREKEEDRVRMDKFLEDYRAQKPARFSYADIKRITGGFKEKLGEGAHGTVFKGKLSSEILVAVKILNNTQGEGKEFITEVEIMGKIHHINVVRLLGFCADGIHRALVYNLFQNGSLQSFIFPPDNKDHFMGWVKLQQIALGIAKGIEYLHEGCNHPILHFDINPHNVLLDDTFIPKISDFGLAKICSKNLSVVSMTAARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEIVGGRKNVDSSSTENFNVLYPEWIHNLLEGDIHIHIEDEGDVKIAKKLAIVGLWCIQWQPMNRPSIKTIIQMLETEYYNQLTIPPNPFHSTTSITTSEGSLARQPFQMEVIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M274</accession>
    <name>A0A392M274_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein arginine N-methyltransferase 1.5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002152</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002209">
        <property type="protein sequence ID" value="MCH81366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016274">
        <property type="term" value="F:protein-arginine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025799">
        <property type="entry name" value="Arg_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035247">
        <property type="entry name" value="PRMT5_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10738">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10738:SF0">
        <property type="entry name" value="PROTEIN ARGININE N-METHYLTRANSFERASE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17285">
        <property type="entry name" value="PRMT5_TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRMT5 TIM barrel" evidence="2">
        <location>
            <begin position="39"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="20129" checksum="5783F61CC88A9A35" modified="2018-12-05" version="1" fragment="single">MPLVDNEKDTSRSKLCGLETYFNKSMTHILGANVFIDGGFDFVVVPLMSPTYRPSLVQQFGXFSIEASLPCARSDLDPMPYLWEDHVIGKISEWIDLDSSDEMVRKDSETAFKQELAWASYLSLQACILPTPKGNSWTNYARCANQFLQEQPKEMQLWLRIPLGKPDGDSVEIYRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2P1</accession>
    <name>A0A392M2P1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002496">
        <property type="protein sequence ID" value="MCH81592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2P1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3255" checksum="A9E9F73D00C760C8" modified="2018-12-05" version="1" fragment="single">FKDSPKLNCDGWGNLGKRRRSGISSSPYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M331</accession>
    <name>A0A392M331_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Poly(A) RNA polymerase cid11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002462</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002617">
        <property type="protein sequence ID" value="MCH81671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050265">
        <property type="term" value="F:RNA uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031123">
        <property type="term" value="P:RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054708">
        <property type="entry name" value="MTPAP-like_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12271">
        <property type="entry name" value="POLY A POLYMERASE CID PAP -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12271:SF40">
        <property type="entry name" value="POLY(A) RNA POLYMERASE GLD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22600">
        <property type="entry name" value="MTPAP-like_central"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Poly(A) RNA polymerase mitochondrial-like central palm" evidence="1">
        <location>
            <begin position="15"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13467" checksum="468597C93CD64C15" modified="2018-12-05" version="1">MMCRRDIDSLSVPFLSIYESLIPPEEEKLKQKQLLGLLEKLVCKEWPMARXXXXXXCANSFGVSKSDIDVCLAIQEADMDKSKIIMKLADILQSDNLQNVQLCGSCGRASPISSDGHLGPSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M364</accession>
    <name>A0A392M364_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0002579</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002767">
        <property type="protein sequence ID" value="MCH81787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M364"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09279">
        <property type="entry name" value="RNase_HI_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="73"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="3">
        <location>
            <begin position="473"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="4">
        <location>
            <begin position="765"/>
            <end position="852"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="852"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH81787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="852" mass="96682" checksum="4BDDECAE61A33E01" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Z3</accession>
    <name>A0A392M3Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003074">
        <property type="protein sequence ID" value="MCH81999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15887" checksum="3CFE78E7CBE59A75" modified="2018-12-05" version="1" fragment="single">CGGVIRGSDGEWIGGFAKCLRMCSAYIAELWGVYEGLLYARGLGYSRVEVNVDSSVMVHVLLKGGSGSPGGRALVWKIRRLMELDWEVVMHHAYRESNKCADALANLGCDMESTSFVYENCPSYLSELFLADLVWINTPRVIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4F6</accession>
    <name>A0A392M4F6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002747</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003007">
        <property type="protein sequence ID" value="MCH81953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="1">
        <location>
            <begin position="72"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="17520" checksum="33F40B2BF28AB2AE" modified="2018-12-05" version="1">MPLLWRFLGVRWHLEVDNDEDLGILRRGSPPRETCLNGRVVGEIQVGGYDHRPRTGLGRAGIEDGFAMYEFAFKELGFRLPFREFAVGVFDWLRLALSQLHPNSLAFIWAFEIVRENLEVEATIPLFFRVFKLQRQPVKNEQHSWVSLKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5V7</accession>
    <name>A0A392M5V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003747">
        <property type="protein sequence ID" value="MCH82483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6638" checksum="B610024AABF7039C" modified="2018-12-05" version="1">MRQGTDGVVGWNFSWRRCLFVWEITLQNELLELLNPISLSGESESDAWGWGPENGGVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M720</accession>
    <name>A0A392M720_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003708</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004351">
        <property type="protein sequence ID" value="MCH82895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13887" checksum="BA3C8013659C3F39" modified="2018-12-05" version="1" fragment="single">MTQRVVVVTTTPGLKAQLQKDAVELGFDKGYYCVIEQIVLYIMFNYVIGDGMADNDAAMETLKNXXXXXXXXXXFSDKERAKARNQFKASKAIEKGMTQRVVVVTTTPGLKAHLQKAAVVLGFNEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7J9</accession>
    <name>A0A392M7J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005118">
        <property type="protein sequence ID" value="MCH83396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2109" checksum="91C2D6DBACF26FB0" modified="2018-12-05" version="1" fragment="single">MATETVELASDHHTSTIHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8F3</accession>
    <name>A0A392M8F3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004596</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005721">
        <property type="protein sequence ID" value="MCH83770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8F3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="7"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="323"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="323"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="375" mass="43269" checksum="994248DBC7439B53" modified="2018-12-05" version="1">MEATARHYSWMDFNSVIRDCNISWVREFYANAVAYSEDDFTSTVRGVTVSYTPAVIDAACGFTPTEQCWARQWRHIAHTEEDYGQMLHTLALSGRDWQYISTGARTRLNITDMMPAARGWAKWLVRNFECASQETEIIMCRCHAIFAIMRREPIRVGDLIVRSIKRMIVSRDTVIGHPFVITMLCQAHRVPFYEDTDIIARPERPLGRVYFQRDVRDLEAAQAAAAPPPGPQHQEQHQPPPHAPQHRFSDYELGMAATTYVQYVRMDWGLPHFSLELMAAVEEYLGQTPVPSYNQLYPEQADLTGHFHRQTTRLLEHQTHVQDTWTERRQPHHPEPQYASDGEIDRMVDEVYDSLRPRTSTQFFSVGGSSSHQGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8M6</accession>
    <name>A0A392M8M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat-like superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003353</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003834">
        <property type="protein sequence ID" value="MCH82544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053277">
        <property type="entry name" value="Endomembrane_traffic_mod"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45005">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45005:SF2">
        <property type="entry name" value="PROTEIN HLB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12012" checksum="298BB39C85F417B1" modified="2018-12-05" version="1">MTTILTVSKAPLQILHFMNELSAIVPAREKQKIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGSVSAQEVSPNELYSQSAIYIAAAHALKPNYSAWSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8X9</accession>
    <name>A0A392M8X9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="16">LRR receptor-like serine/threonine-protein kinase FEI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0003455</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003972">
        <property type="protein sequence ID" value="MCH82644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000719">
        <property type="entry name" value="MDIS1-interacting receptor like kinase 2 isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051809">
        <property type="entry name" value="Plant_receptor-like_S/T_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27008:SF596">
        <property type="entry name" value="OS02G0215500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27008">
        <property type="entry name" value="OS04G0122200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-0675">Receptor</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="14" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="218"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH82644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="382" mass="41933" checksum="4EB79DB083BB2419" modified="2018-12-05" version="1" fragment="single">MEYNQIYGVIPERIGQLIGLTSLNIGNNFLEGTIPDSIGKLNNLVVLNLQKNKLSGNIPTSIGNLTTLSKLFLTDNELQGSIPFTLRYCTNLLELSIADNKLSGDIPNQTFSYLESLIFIFLEDNSLTGPIPSEFGNLKHLAVLYLDSNKFSGEIPKDLASCLTLTELRLARNFLHGSIPLFLGSFRSLEVLDISNNNFSSTIPFELENLTFLSTLNLSFNNLYGEVPKGGVFXNVTTISVTGNKNLCGGIPQLKLPAKRLPYSPSLQNGNLRVTYGELHEATNGFSSSNLIGAGSFGSVYKGSLLHFERPIVVKAIVFEFMPNGSLENLLHDIEGSENHNLSFTKRVDIALDVAHALDYLHNDTEQAIVHCDIKPSNVLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Y7</accession>
    <name>A0A392M8Y7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon Copia-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005673">
        <property type="protein sequence ID" value="MCH83741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8Y7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="1">
        <location>
            <begin position="28"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9406" checksum="62C45AFB3402EDC8" modified="2018-12-05" version="1">MDCNKPPQVHIPTSPALIDHCHNRFYVHPSENYALPLVDSVLDGKNYHFWSCSMKKVIIMKNKIRFLDGSFPIPNDFDPTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9L1</accession>
    <name>A0A392M9L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006305">
        <property type="protein sequence ID" value="MCH84126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9L1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="10793" checksum="0F20A5CBC6D3C02F" modified="2018-12-05" version="1">MSEFAIFKAFNVNIHPPKAPTITEVLWQPPFSIWIKCNIDGAAKGYPGFAACGGLYRNKYGDFIGGFADNLGIASSIYAEGAIHAIEIAVGLIFGLKLTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA10</accession>
    <name>A0A392MA10_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005153</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006636">
        <property type="protein sequence ID" value="MCH84322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF99">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="201"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="262"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="416"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="232"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="428"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="464"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="516" mass="57420" checksum="95BD11D83EA77114" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAG0</accession>
    <name>A0A392MAG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">14-3-3-like protein D-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005258</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 14-3-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006795">
        <property type="protein sequence ID" value="MCH84426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.190.20">
        <property type="entry name" value="14-3-3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000308">
        <property type="entry name" value="14-3-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036815">
        <property type="entry name" value="14-3-3_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023410">
        <property type="entry name" value="14-3-3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18860">
        <property type="entry name" value="14-3-3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00244">
        <property type="entry name" value="14-3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00305">
        <property type="entry name" value="1433ZETA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00101">
        <property type="entry name" value="14_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48445">
        <property type="entry name" value="14-3-3 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="14-3-3" evidence="2">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15971" checksum="FC8C7F3BCD3A3428" modified="2018-12-05" version="1">MVEAMKKLAKMDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNESNVKRIKHYRQKVELELSNICNDIMILLDEHLIPSTNIAESTVFYYKMKGDYYCYLAEFKDGNEKKEVADQSLQAYQSLKFVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAK7</accession>
    <name>A0A392MAK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nucleobase-ascorbate transporter 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005014</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006403">
        <property type="protein sequence ID" value="MCH84183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11119">
        <property type="entry name" value="XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH84183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="20310" checksum="F59C55424B9A409A" modified="2018-12-05" version="1" fragment="single">IRVPYPFQWGAPSFDAGEAFAMMMASFVALVESSGAFIAVYRFASATPLPPSILSRGIGWQGVGILLSGLFGTGIGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPPPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFVLGFSIFLGLSIPQYFNEYTAINGFGPVHTGARW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB20</accession>
    <name>A0A392MB20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin-protein ligase LIN-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005468</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007138">
        <property type="protein sequence ID" value="MCH84636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055566">
        <property type="entry name" value="ARM_LIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052858">
        <property type="entry name" value="E3_ubiquitin-ligase_LIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47446">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47446:SF3">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23628">
        <property type="entry name" value="ARM_LIN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="Putative E3 ubiquitin-protein ligase LIN ARM-like" evidence="2">
        <location>
            <begin position="2"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="1">
        <location>
            <begin position="169"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="24786" checksum="4A8B063386A06815" modified="2018-12-05" version="1" fragment="single">MKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDRLYSSSLDKTIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCF8</accession>
    <name>A0A392MCF8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">A2U01_0005290</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">cv. 10/8</strain>
            <tissue evidence="18">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010006840">
        <property type="protein sequence ID" value="MCH84458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001023">
        <property type="entry name" value="Os07g0541700 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045874">
        <property type="entry name" value="LRK10/LRL21-25-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27009">
        <property type="entry name" value="RUST RESISTANCE KINASE LR10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-0675">Receptor</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 16" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="17">
        <location>
            <begin position="3"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="MCH84458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="284" mass="31981" checksum="D0EB3F002D4E2C0F" modified="2018-12-05" version="1">MARGFKLKLGAGAYGSVFKGNLCSGPSVAIKMLSESKGKGQDFINEVATIGRIHHLNVVQLIGFCVEGSKRAIVYEFMPNGSLDKIIFSKEGSISINYKRIFEISVGIARGIAYLHHGCEMKILHFDIKPHNILLDENLTPKISDFGLAKLYPVENSIITMTKERGTNGYMAPELSYNNIGGVSYKADVYSFGMLLMEMIYCPHWIYDQLGKEQEIEIDVTKEDMEIVKKMIIVSLWCIQWKPDDRPAMNKVVEMLEGDIESLNMPPKPIIFPHETIAENQRNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MED0</accession>
    <name>A0A392MED0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009255">
        <property type="protein sequence ID" value="MCH85850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MED0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6672" checksum="4C8B7BFDC7146631" modified="2018-12-05" version="1">MAEEANRKSFMVAACLRQRRGMEEPAACRTVSTLKEQQVLVLTSLWVMGVRQCCQIVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFH9</accession>
    <name>A0A392MFH9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008638">
        <property type="protein sequence ID" value="MCH85508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="350"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="483"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="157"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="496"/>
            <end position="512"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="516"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="540"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="540" mass="60876" checksum="F3EFA4D92983BDFC" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFS1</accession>
    <name>A0A392MFS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Electron carrier/protein disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007213</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010185">
        <property type="protein sequence ID" value="MCH86356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04371">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000591">
        <property type="entry name" value="DEP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46361">
        <property type="entry name" value="ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46361:SF3">
        <property type="entry name" value="ELECTRON CARRIER_ PROTEIN DISULFIDE OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00610">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00049">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50186">
        <property type="entry name" value="DEP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51354">
        <property type="entry name" value="GLUTAREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEP" evidence="2">
        <location>
            <begin position="269"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="404" mass="45252" checksum="19A3ED89099D3750" modified="2018-12-05" version="1" fragment="single">MDQKADETPNEDSNLDPVFDGTEIPGMEANRSTSIRKLDGDQDSPGVVEKAVALKNLVKEKSAVAVSTMLRRLSGKSDETAVGNFDDEGKDISDISEVNEAKLVSEKPVEKSAWNPLNYIKKSSDVDAENKTGQKDSITDGPPLPIALKGRIILYTKLGCQESKIFRLFLRTKRLRYVEINIDVYPGRKMELEKISGSTSVPKLFFNEICIGGLSELKNLDESGKLDEKIDFLITEAPLFETPSPPFSGEDDISSTGAVDELALIARKMKESIIVKDRLYKMRRFTNCFLGSDALDFLSEDQYLERPEAVEFARKLASKLFFRHVLDENLFEDGNHVYRFLDDDPIVVSQCHNIPRGIVTVNPKPIAEIASRLRFLASAMFEAYAFEDGRRVDYTSLHGSEEFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFT1</accession>
    <name>A0A392MFT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Quinone oxidoreductase PIG3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006456</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008822">
        <property type="protein sequence ID" value="MCH85608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48106:SF8">
        <property type="entry name" value="OS02G0805600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48106">
        <property type="entry name" value="QUINONE OXIDOREDUCTASE PIG3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alcohol dehydrogenase-like N-terminal" evidence="3">
        <location>
            <begin position="27"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9084" checksum="CBCB8A77C507C52D" modified="2018-12-05" version="1" fragment="single">MKAIVITTPGGPEVLQLQEVDDPQFKDDEVLIRVHATALNRADTLQRKGAYPPPQGASPYPGLECSGIIESVGKNVSKWKIGDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG80</accession>
    <name>A0A392MG80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein MID1-COMPLEMENTING ACTIVITY 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008144">
        <property type="protein sequence ID" value="MCH85244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.930.20">
        <property type="entry name" value="Adaptor protein Cbl, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036537">
        <property type="entry name" value="Adaptor_Cbl_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045766">
        <property type="entry name" value="MCAfunc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46604">
        <property type="entry name" value="PROTEIN MID1-COMPLEMENTING ACTIVITY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46604:SF3">
        <property type="entry name" value="PROTEIN MID1-COMPLEMENTING ACTIVITY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19584">
        <property type="entry name" value="MCAfunc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCAfunc" evidence="1">
        <location>
            <begin position="25"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15618" checksum="28766BF8561E93BF" modified="2018-12-05" version="1" fragment="single">MASSWEHFGEIANVAQLTGLDAVKLIGMIVKAANTARMHKKNCRQFAQHLKLIGNLLDQLKISELKKYPETREPLEQLEDALRRKAQNEIDRYLRLVPLITLVDNARFNTRVRERLEVIEKDQCEYTLDDEDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHW2</accession>
    <name>A0A392MHW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010945">
        <property type="protein sequence ID" value="MCH86783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7105" checksum="DA7145F8FCD5BBEB" modified="2018-12-05" version="1" fragment="single">MPKIGSHSHMLAAVHWCGTPSSCTYCVRKGVVVPTNDGGFGGAHCWGFMSIVADRILRDDLNVLCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI69</accession>
    <name>A0A392MI69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysosomal pro-X carboxypeptidase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008066</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011730">
        <property type="protein sequence ID" value="MCH87200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070008">
        <property type="term" value="F:serine-type exopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008758">
        <property type="entry name" value="Peptidase_S28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010:SF96">
        <property type="entry name" value="LYSOSOMAL PRO-X CARBOXYPEPTIDASE-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11010">
        <property type="entry name" value="PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05577">
        <property type="entry name" value="Peptidase_S28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16225" checksum="7149B1838565E0F6" modified="2018-12-05" version="1" fragment="single">HRYYGKSVPFGTKEEVLKNIGYFNSAQALADYADVIIHIKKILHAESSPVVVVGGSYSGMLASWFRLKYPHLAIGALASSAPILFIDDMIQPNAYFDTVSRDFKLVTKLFCYCVGFYVLQSWFGGTVACSSRLWPSLACAPCVLCIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI96</accession>
    <name>A0A392MI96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Protein spinster</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0008083</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the major facilitator superfamily. Spinster (TC 2.A.1.49) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011761">
        <property type="protein sequence ID" value="MCH87217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044770">
        <property type="entry name" value="MFS_spinster-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23505:SF52">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23505">
        <property type="entry name" value="SPINSTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="8">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH87217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="8795" checksum="D39211740997D67A" modified="2018-12-05" version="1" fragment="single">MIKLVAISRGLNGIGLAIVTPAIQSLVADSTVDSNRGVAFGWLQLTGNLGSIVGGLFAILIASKSIAGIPGWRIAFHLVALISVIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MID2</accession>
    <name>A0A392MID2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aspartic proteinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0008142</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011873">
        <property type="protein sequence ID" value="MCH87276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MID2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.70.10:FF:000115">
        <property type="entry name" value="Lysosomal aspartic protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001461">
        <property type="entry name" value="Aspartic_peptidase_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033121">
        <property type="entry name" value="PEPTIDASE_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47966:SF20">
        <property type="entry name" value="ASPARTIC PROTEINASE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47966">
        <property type="entry name" value="BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00026">
        <property type="entry name" value="Asp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51767">
        <property type="entry name" value="PEPTIDASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0865">Zymogen</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017255173" evidence="6">
        <location>
            <begin position="19"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase A1" evidence="7">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH87276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="19032" checksum="753C7A0B4BECFD10" modified="2018-12-05" version="1" fragment="single">MLCLTLEVLIFGFHLLDASSQSGISSTYNEIGVPCEIPYDDGYIYGFFSQDNVKVGDIIVKDQEFSEITREGNFALLALPFDGILGLGFQEISVGKVTPVWYNMIEQGQILDKVFSLWLNKDPMAEKGGEIVFGGMDKRHFRGDHSYFPISQEGYWQIEVGDILLGNNTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJC8</accession>
    <name>A0A392MJC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase C869.01-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008051</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011705">
        <property type="protein sequence ID" value="MCH87185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="entry name" value="Amidase signature (AS) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678">
        <property type="entry name" value="AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42678:SF36">
        <property type="entry name" value="C869.01-LIKE PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="Amidase signature (AS) enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017430028" evidence="1">
        <location>
            <begin position="32"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="58"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="28718" checksum="4CD74BB2829C4D30" modified="2018-12-05" version="1">MDSALASYFFQFLSIILVLVTFPSVLPTTLASGFSIKEATVQDLQLAFKRNQLTSRQLVEFYLNQIKIQNPILKGVLEVNPDALAQADRADRERKTKAPGSLSGLHGIPILVKDNIATKDKLNTTAGSFALLGSVVPRDAGVVTKLRKAGAIILGKATLSEWSHQRSSNAPSGWNARGGQGKVNCYFFSSYLIHWGATGPENPYTLDDPCGSSSGSAISVAANLVTVSLGTETDGSILCPSSTNSVVGIKPTVGLTSRAGVVPISPRQDSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK27</accession>
    <name>A0A392MK27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-transporting ATPase 3 endoplasmic reticulum-type-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012770">
        <property type="protein sequence ID" value="MCH87711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21958" checksum="8EA89C2925269EF1" modified="2018-12-05" version="1" fragment="single">AGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHMIDFTEHSYTASEFEELPAIQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVKRAKRVYRQVCLAGEPLIRWKKGFNARQVASCALRKYALRKDYCDIHKVMPRETQKGGKILVFDPVRGRTDPMSSTAMAVVSTLDVHDRPDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK30</accession>
    <name>A0A392MK30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transducin family protein/WD-40 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007943</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011479">
        <property type="protein sequence ID" value="MCH87078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057854">
        <property type="entry name" value="TPR_WDR11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039694">
        <property type="entry name" value="WDR11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14593">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14593:SF5">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23753">
        <property type="entry name" value="TPR_WDR11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WDR11 TPR" evidence="1">
        <location>
            <begin position="45"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="203" mass="22411" checksum="9E2A69B9839AC010" modified="2018-12-05" version="1">MARHPFPGSQPTNTVVMSRHSNPTIHNLYMEALQMILQLGVKPSWFNTCSTTIKKRPHLIPGAPPPTGDLREYMINVPPLGDSVVPEMLLKVLEPYRKEGCMLDDERAKLYASIVDKGCAARFAFAATVFGESSEALFWLQLPQALKHFINKSSRKPPSKGPTTEAVSEVDETSLLSRISSKGKPTEGMVRDSLFAGLIYSIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK31</accession>
    <name>A0A392MK31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein TIME FOR COFFEE-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013078">
        <property type="protein sequence ID" value="MCH87876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042752">
        <property type="term" value="P:regulation of circadian rhythm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039317">
        <property type="entry name" value="TIC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34798">
        <property type="entry name" value="PROTEIN TIME FOR COFFEE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34798:SF1">
        <property type="entry name" value="TIC-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="31"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="167"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="186"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="299" mass="32420" checksum="622582706FE57609" modified="2018-12-05" version="1" fragment="single">SVKRTQESWISGGGGEKQIFRANSPGRRSVEPSASSSKSVSAQQKMKATGAVAKTSELSSSEMEIEIAELLYGLMTSKNHDSSSQKVEATIIHNTSTDAENNKSKDCNSTEESARVQGEKPVGVGCHHGNATCHEKGSSEVPKEDIGEDRVNSGAGLGGDSADGRPLSTTWGSQSCASTRGMSIVPEDKTQRVGKFEIDLMAPPPTMLSPRGSDLSRGNLTSEIKNLAPDLEMKREDSIKVEDKVEMLVTVEKVPEEIEDTAKMAAFKDKLDVLKHYLEKPNNDIKINNKLEEQDRNKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKA3</accession>
    <name>A0A392MKA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011644">
        <property type="protein sequence ID" value="MCH87158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14879" checksum="F3D495B92E1A72BA" modified="2018-12-05" version="1" fragment="single">MEELAQTLPDEDVEDRGHNDILYQALDRPQYSGRVRARGFAVCPKDVFPPELPAAKQKKVDNIHAMYHRVIERLNILEREKEERQRAGEAGTVEREQLVVRCQQPEAVEREQPSVKDSCNPVDFDTIPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKV1</accession>
    <name>A0A392MKV1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012600">
        <property type="protein sequence ID" value="MCH87629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="257"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="258"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="282" mass="31849" checksum="726DC41EB0E16E10" modified="2018-12-05" version="1" fragment="single">MSEDIIKRAFSSVENTFMEYVKNTYQNDQTRIEDGSCCIASIIWGRTLYIANLGDSRAVLGSNASTFKTLHIEQLTNDHSVSNEAIREELQARNPYDSEVVMYCEETWNKGNIKVNRSIGYAHFKDHPINSLRRLPEIEQITQVLVSAKPELHSRKIRKGDRFLILASHGFWNFMTNENAANIVNRNPRDEIAKRLLSAALEKATEKRGAKGVYDDMIIIVLFFSEGLSQRKEEDTPKTVVLHEGPSYLSNIIMASGKSDQSRLSPTSSIPNPRASVPTLTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML37</accession>
    <name>A0A392ML37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Cellulose synthase A catalytic subunit 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0009109</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013751">
        <property type="protein sequence ID" value="MCH88226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016760">
        <property type="term" value="F:cellulose synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030244">
        <property type="term" value="P:cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005150">
        <property type="entry name" value="Cellulose_synth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13301">
        <property type="entry name" value="X-BOX TRANSCRIPTION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03552">
        <property type="entry name" value="Cellulose_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="19"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="287"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="298"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR605150-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH88226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="316" mass="36256" checksum="B16CEBB094813ABC" modified="2018-12-05" version="1" fragment="single">MHTDSHNLACFVELNDESGNPIWKNRVESWKEKDKKNKKKKAAPIKAENETPVPQEQHMEEMEPSSENAAAEPLSIIIPVSKSKLAPYRTVIIMRLIILGLFFHYRVTHPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWSPINRVAFTDRLAARFEREGEPCQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVXXXXXXAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLG5</accession>
    <name>A0A392MLG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012985">
        <property type="protein sequence ID" value="MCH87829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="144"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="158"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="25265" checksum="99D62CBAFF92CD2E" modified="2018-12-05" version="1" fragment="single">SEPPALPNPPAKKRCRKDTLKNPGENVDGHVSNKHAKVGKTAAGKTASLPAKNTFNSLQNLAVPGEDLKPQNQXXXXXXXXXXXXXXXXXXXXXXVCLKESNNDVPSVVICLNVPSVAEAKAADKQTTGVLQSKNRVDKYNDASGVLDTSHQKYQEKGVSSKSQPGRTPSSVDGLENTGGSKDKNGINXLPDLNLSGGKSVMQGPHWHSFISALNKEYSYSIDVICVSDTNVLQYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLV2</accession>
    <name>A0A392MLV2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0008830</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.49" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010013213">
        <property type="protein sequence ID" value="MCH87949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="8">
        <location>
            <begin position="267"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH87949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="394" mass="44641" checksum="BFF265709137DDF6" modified="2018-12-05" version="1" fragment="single">MGDGHRIVSKGVCRGVKINLGQIEVKVDAIVLELGGLDMVLGVAWLSTLGKVMMDWKTLSMQFWQGNNEVKLQGQAINVRPYRYPHHQKEEIERQVTELLKAGVIRPSMSEYSSPVILVKKKDKSWRMCVDYRALNKATIPDKYPIPIVDELLDELYGATIFSKIDLKSGHIDYLGHIISGEGVAVDPEKVKCILEWPVPKTVKGVRGFLGLTGYYRKFIKDYGKMAKPLTELTKKDNFIWGTEATSAFQLMKKIMTSPPVLVLPNFDIPFEVECDAAGRGIGAVLMQQRRPIAFFSKALSDGNLAKSVYEKELMALVLCIQHWRHYLLGKQFTVYTDHKSLKHFLQQRVTSPDQQGWLAKLLGYQFEVKYKPGLENKAADALSRCYDDIELKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLX8</accession>
    <name>A0A392MLX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014061">
        <property type="protein sequence ID" value="MCH88381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="116"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="409" mass="45210" checksum="816EC7E47E913B95" modified="2018-12-05" version="1" fragment="single">MSNQLAVANSEGIALEVVLPSPGGALTISPSVSIVPCSLVNRRGVLGSGTAGLVGGGSNSRGDSLTSGGRLVDRDTTEAHHIIDILDDLGMAFKNAGDEDVRRVMEFEERDRCSRVKRRKVREVVRSENIDFLAIQETKMEAIPVNFVHGMWGNSDCDFVYLPAVGNSGGILSIWNKVKATLVFTFTDEGFVGVCLDLIEKQSRCFIVNVYAKCNISAKIRLWENISMTKLGFGEGLWCVVGDFNSVRVRHERLGVGVVLDDGGRSSEMVAFDSFITSLDLIDMPLIGRRFTWYHPNGVSMSRLDRILISTSWYDVWGAPNVWALARDVADHCPLVLKYSSADXXXXXXXXXXXXXXXXXXKDVISSAWESQMIEGWMGFILKEKLKGLKGVIKEWSRMTFGVAEERKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMH7</accession>
    <name>A0A392MMH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CNGC5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009472</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014439">
        <property type="protein sequence ID" value="MCH88581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="32117" checksum="23CF466836AB1246" modified="2018-12-05" version="1" fragment="single">MERLRNKSDASSIVRFTEIQHQHAKTLIQEEAFWRQRAKMHWLKDGDLNTKFIHRSATARAKVKKIEKLRNDEEEVVTGLQNLEEIIRKYFKILFQPKGGNQDLEQSTFVEGRSIIYNALIAIEIIHTLKRRTRGGKGELALKIDISKAYDKVEWSFLKGMLIKMGFSDTWVHWMMLSNLSETRKLMELLKIYEEASGQEINLSKSEVFFSRNIRRATQADLSNMMGVRQVMGAGTYLRLPSMVGRSKKETFAFVKYRIWKRINSWRSRPLSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMY2</accession>
    <name>A0A392MMY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015061">
        <property type="protein sequence ID" value="MCH88892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="19008" checksum="C0BE884BA820DFD5" modified="2018-12-05" version="1" fragment="single">MQLRRLVGLWGEPSQWALARDVSDHCPIILRYSSQLWGPKPFKFNNFWLDHQGFKEKLKRLRGDLKTWNHEAFGNLDHNIAHVIEAIKELDLKAESGPLTQVENDARSKGFSDLWGLLKCRDSRLFQRSRSRWLKEGDANTGFFHASVKRRGRCNSILALHVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN97</accession>
    <name>A0A392MN97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009466</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014423">
        <property type="protein sequence ID" value="MCH88575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11066" checksum="44B47BD328DFD5ED" modified="2018-12-05" version="1" fragment="single">TRRTGGAIELNGVATPPPVVGILLCHGLFGCSVNVLSRRFLVQLLCSRPGSWCLCCCGVRRSFLGLHDWSLDCKLWDGVVLFNHSEGPFYFLAIVVWTVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPF8</accession>
    <name>A0A392MPF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Purple acid phosphatase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009868</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015207">
        <property type="protein sequence ID" value="MCH88975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003993">
        <property type="term" value="F:acid phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.380">
        <property type="entry name" value="Purple acid phosphatase-like, N-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039331">
        <property type="entry name" value="PAPs-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015914">
        <property type="entry name" value="PAPs_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008963">
        <property type="entry name" value="Purple_acid_Pase-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22953">
        <property type="entry name" value="ACID PHOSPHATASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22953:SF55">
        <property type="entry name" value="BIFUNCTIONAL PURPLE ACID PHOSPHATASE 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16656">
        <property type="entry name" value="Pur_ac_phosph_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49363">
        <property type="entry name" value="Purple acid phosphatase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Purple acid phosphatase N-terminal" evidence="2">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14351" checksum="A3900D5F67F9D17F" modified="2018-12-05" version="1" fragment="single">AVIISWVTPDEPGSSRVQFGTSEDKFQASAEGTVSNYTFGEYKSGYIHHCLVEGLEHNTKYYYRIGSGDSSREFWFETPPKVEADAPYKFGIIGISTLMLVYGGIHGPDLLRRVQHISHGYGLQEIMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPS3</accession>
    <name>A0A392MPS3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009862</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015196">
        <property type="protein sequence ID" value="MCH88969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052586">
        <property type="entry name" value="ASCC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21494:SF2">
        <property type="entry name" value="NUCLEIC ACID BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="175"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="331"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="470" mass="51787" checksum="95DB72CAFE9276A0" modified="2018-12-05" version="1" fragment="single">LEDCQADSDEDKSDSSIFMNRNYAVPRISEEHESIGETSQKVSLDNVLIFEAGSHFDNGGVSRSVGIEKGDMPNVRCSTPRDSVSQIFSPTVRTAVDYRSNSFEGRNDFPIVEKNQVLNMNFNSPLSRSSSGAVSNVLASPNHHFMSPTSLTKSQIVWCGDGDPAAVDIVAASKQLWVGCVAPDMPESHIRFQIERFGPIEKFIFFPLKGFALVEYRRIIDAIKARHYAPGNFPCRVKFMDIGLGTRGAMNGVAIGSSFHIYVGNISSQWAKDEILHESRKVVYKGPLTVIDLSCEFALLMEFETPEEAASVMLHLRQFRRERSNYNPHFGPGTVNVVSPHSRTLPGSPADSSRTRMSHLGNILSSLRAKYNINQNIGLHDNYITGNSCASSMHEEDTVPSSTLWITIPHSSSQFLTDDELMSICNLAIGNSGSIARLTQAKMHMGDGWFVECSNVDGAVSVLKNLRACP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRM2</accession>
    <name>A0A392MRM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Kinesin-4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011127</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017839">
        <property type="protein sequence ID" value="MCH90216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031852">
        <property type="entry name" value="Vik1/Cik1_MT-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972:SF18">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIN-14R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KLP-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16796">
        <property type="entry name" value="Microtub_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2" id="KW-0505">Motor protein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Kinesin motor" evidence="3">
        <location>
            <begin position="100"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="182"/>
            <end position="189"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="231" mass="26284" checksum="2569E328A197E758" modified="2018-12-05" version="1" fragment="single">QTVEKQAENLRSISNXYELDKKKWAEAITSLQEQVKVMKSEQSRLSLEAHECVDSIPELNEMVFAVQELVKQCEDLKVKYYEEMTQRKKLFNEVQEAKGNIRVFCRCRPLNKGEMSAGCTTVVDFDASKDGCLGILTTGSTKKFRFDRVYTPKDDQVDVFADASPMVISVLDGYNVCIFAYGQTGTGKTFTMEGTEQNRGVNYRTLEHLFKVSKERSETFSYDISVSVLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSG4</accession>
    <name>A0A392MSG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Non-LTR retroelement reverse transcriptase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018379">
        <property type="protein sequence ID" value="MCH90470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="112"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="269" mass="30492" checksum="2AB87862F4A24C76" modified="2018-12-05" version="1">MTTENNCPRCDNAPESIMHVLRDCEEVAEFWSSIIRPEHWAKFFSLGLHAWVDWNLTKDEIGHTPWKWSIFFGVAVSSITHDNHHPSEYLERVNNRNQVYWEPPLEGVYKLNVDGSHNWATGKSSCGGLIRDSKGKFIKGFYCNLGCSNAIYAEMTALLLGVKLARSMKLTQVIFETDSLFVTTAIIRRSISISYLKPLLEEVLNLLNLTDWKASVSHCFREANCCADFLAHEGHNGPFFVVSFNSISSLLDILLKNDCNGPSFARIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTU9</accession>
    <name>A0A392MTU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">QWRF motif-containing protein 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011314</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018216">
        <property type="protein sequence ID" value="MCH90399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005880">
        <property type="term" value="C:nuclear microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051225">
        <property type="term" value="P:spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31807">
        <property type="entry name" value="AUGMIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31807:SF37">
        <property type="entry name" value="HAUS AUGMIN-LIKE COMPLEX SUBUNIT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6056" checksum="A8AE62475B63F721" modified="2018-12-05" version="1">MNNLISEVAIVSAQEKAMLDECEALLAFGTSMQVEEYSLRTHLMQIKQALDVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU51</accession>
    <name>A0A392MU51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0012005</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019642">
        <property type="protein sequence ID" value="MCH91080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000322">
        <property type="entry name" value="Probable disease resistance protein At1g63360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1052">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RPM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="48"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="233"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="5">
        <location>
            <begin position="369"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="430" mass="49457" checksum="B190500A034A62A3" modified="2018-12-05" version="1" fragment="single">VRCLVEGTNELMLVSVVGMGGLGKTTLSMVLLIDMVKKFCKDCNEPIPKDLQMMDDRTLITQVRQYLESKRYLVFFDDVWQEKISDEIKDALISNNKGSRIIVTTRIMHVAEYFKNSFLVHVHKLQPLPPNKAWELFCNRAFRSEPGGQCPTELEDLSIEIVQKCGGLPLAIVAIAGLLSTKLKTKSEWKQVSQNIRMELERNVHLTDLIKILSLSYDNLPYHLKPCLLYFGIYPEDCPISRKRLTGQWMAEGFVMNEVRRPSEEVAEEYLTELIQRNLVEVTRVGFDGRVKNCQVHDLLREVIIRKMKDLSFCHLMHEDDEQVTVGITRRFSIAAVSNNDLSNNRNSGIRAIFVFDKGEFPKHFMDGLSAKFKLLKVLDFENSLLSFIPDNLGNLFHLRYLNLRYTKVTVLPRSIGDLVNLETLDLRQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUA1</accession>
    <name>A0A392MUA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">F-box only protein 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012041</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019728">
        <property type="protein sequence ID" value="MCH91116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF12">
        <property type="entry name" value="F-BOX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017356625" evidence="2">
        <location>
            <begin position="21"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23081" checksum="B59D942A88CCD4B5" modified="2018-12-05" version="1" fragment="single">MRKLTKIFVCLFCRWTSFDSEEDSSVDDCCDLVMAAGKSHSFRISEPLKPPPAKKPRKDRSRGKSLGRSCTSEVMEQEIWKDFPEDLFEAVIARLPIAAFFRFRSVCRXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHENVNSGAMYDPSLKKWHHPSISPLPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUA6</accession>
    <name>A0A392MUA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division control protein 48 C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019792">
        <property type="protein sequence ID" value="MCH91140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055278">
        <property type="entry name" value="CDC48c"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470:SF1">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="155"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20570" checksum="C55389C8B378C45C" modified="2018-12-05" version="1" fragment="single">MVKETLLRDVKLCKSTFSISNAIDIVDHLRSTYSSDYNRYNYMRLLYSVQNALDSLKNDNKTGEVKKEIKSAVTDHISETNAVRWKEHALPGYTPRGFWTVEQTGRLPQQINRFPREGFSPIPDVKWEDVGALDHVREEFDQHIVKRIKDPDVYQGPELLKNDAGESESGVRKLFDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYN9</accession>
    <name>A0A392MYN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Stress-induced receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022675">
        <property type="protein sequence ID" value="MCH92432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10443" checksum="A0F14E903A24C7AA" modified="2018-12-05" version="1">MVATLTREWFEDIRKGNVSYDEIHGLIVDGFEVSWLPVVCESRCGKGTICEVVDEKSGQVKCGKRFCHYAYQTTDKCELQQQIFGYIRGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N032</accession>
    <name>A0A392N032_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chloride channel protein CLC-c-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014104</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024291">
        <property type="protein sequence ID" value="MCH93156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N032"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009705">
        <property type="term" value="C:plant-type vacuole membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015108">
        <property type="term" value="F:chloride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3080.10">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051280">
        <property type="entry name" value="Cl-channel/antiporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689:SF144">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="24"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="68"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13644" checksum="277F11F24F8C2B1F" modified="2018-12-05" version="1" fragment="single">IIENDLFKQDWRSRGKAELAQYMILRWTIALLIGLGTGLVAFFNNIGVENIAGFKLLLTNDLMLNHKYYKAFAVYASCNMVLAIAAASLCAYIAPAAAGSGIPEVKSYLNGVDAPSILAPTTLFVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N088</accession>
    <name>A0A392N088_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022537">
        <property type="protein sequence ID" value="MCH92368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N088"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF34">
        <property type="entry name" value="EMB|CAB62440.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box/LRR-repeat protein 15/At3g58940/PEG3-like LRR" evidence="1">
        <location>
            <begin position="35"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="19960" checksum="B248EAF94510D07A" modified="2018-12-05" version="1" fragment="single">MDTVIFSPNSQHLPLTSFQLTCHFRDGLSDYSTFDQWIEAAKQRHVKRLDLYLLNVPLTPSTIFCCKTLVNLRLTSVSVAELPRCSVDLPLLKYLYLDDVRFHDMENLIRLIYECPMLEILKTTNVKVEVEAGDGVTAGGYLKPLSKLIKADTHSLALPLRIICNVQYLTIIDFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0A6</accession>
    <name>A0A392N0A6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter G family member 31-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0013539</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023025">
        <property type="protein sequence ID" value="MCH92599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC2_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19241">
        <property type="entry name" value="ATP-BINDING CASSETTE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="ABC-2 type transporter transmembrane" evidence="7">
        <location>
            <begin position="32"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH92599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22464" checksum="620D181C3611F8ED" modified="2018-12-05" version="1" fragment="single">GVEASILEFEHPPAGSQPLKFDTMYSQNLLSQFFLCLWKQNLVYWRSPSYNAMRLYFTTISALIFGSVFWDIGTKRATTQELFVLMGALYSACLFLGVNNASSVQPIVSIERTVFYREKAAGMYSPLAYGAAQGLVELPYIAFQTLVFGLITYTMVNFEKTXEKFFLYLLFLFLTFTYFTFYGMMAVGLTPSQQLAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0T6</accession>
    <name>A0A392N0T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">WD repeat-containing protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0013518</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022979">
        <property type="protein sequence ID" value="MCH92578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030515">
        <property type="term" value="F:snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001845">
        <property type="entry name" value="Transducin family protein / WD-40 repeat family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051570">
        <property type="entry name" value="TBC1_cilium_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19853">
        <property type="entry name" value="WD REPEAT CONTAINING PROTEIN 3 WDR3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19853:SF0">
        <property type="entry name" value="WD REPEAT-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="4"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="222"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="303"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="111"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="111"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="353" mass="38685" checksum="1892A468A1012F2B" modified="2018-12-05" version="1">MQIVGGHHSEIWTLDVDPAERFLVTGSADKELRFYAIKQDSVDGESVKDGDDSSISNKWEVLTHFGEIQRQSKDRVATVQFNKSGNLLACHVAGKMVEIFRVLDDAEAKRKAKRRVNRKKEKKNGKVATEGTENGDGNIENKGENSTVTDGPIETNKITVTVPDVFKLLHTIRASKKICSISFCPITPKNSLATLALSLNNNLIEFYSIESAETKKTLAIDLQGHRSDVRSVTLSSDNSFLLSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTLEIIDIGSGTRVEVVEAHGGSVRTIAALPEKLGFVTGSADHEVKFWEYQIKQKPGQVCSSYHSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N103</accession>
    <name>A0A392N103_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024891">
        <property type="protein sequence ID" value="MCH93421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N103"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9161" checksum="B69D3CAC32D55BC0" modified="2018-12-05" version="1" fragment="single">MIKLLLYASPETKVHFIIVTSMDSKTRFMITEASITSKIAKFKAVLISSLETGNPFTRTVFYAEYKCTGPGSNLAARPAWIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N199</accession>
    <name>A0A392N199_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022306">
        <property type="protein sequence ID" value="MCH92264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N199"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33257">
        <property type="entry name" value="OS05G0165500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33257:SF58">
        <property type="entry name" value="REJ DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="21556" checksum="7F83C46114D131C2" modified="2018-12-05" version="1" fragment="single">MFNSTCEKSVLQIKQDDKFFSRLLSKENSNTNPSFRVSVAIPFVWESQPGTPKYTFSKDTIPPLTPPPSYHFKNSNKKNEKKHSKSTNLFLALLQKLNLKKINQSSSSSSSPSSFSSSYPSYLSSLSTESSKITSATKRISRRRFLSFGSSFDFRGENEEDGNGSPNSTLCFGIHRSSSSNTGFQSNYKRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1K8</accession>
    <name>A0A392N1K8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">WAT1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013312</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022548">
        <property type="protein sequence ID" value="MCH92374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1K8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8057" checksum="EC82FCD6454BDAEE" modified="2018-12-05" version="1">MKEVICNSLKGAIPVVLMVLSQVGYAAVNIMYKLAINDGMSMRVAAAYRLSFAAAFTIPLALIFDRFVFLLHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1N8</accession>
    <name>A0A392N1N8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative 18S pre-ribosomal assembly protein gar2-related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013824</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023682">
        <property type="protein sequence ID" value="MCH92878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009786">
        <property type="term" value="P:regulation of asymmetric cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040378">
        <property type="entry name" value="BASL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33914">
        <property type="entry name" value="18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33914:SF2">
        <property type="entry name" value="OS02G0582100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="32427" checksum="B462ACA8220EFAEA" modified="2018-12-05" version="1" fragment="single">MGVELDSQSFEFNDSDENSAGFKSRNQKAKEYDNRVSKNVKMNEHDFDSLPNDMKSANCIPEPKLEFYNSDIDLKNHHEPKPEFYDGMVDFKSDYETQVMDSHEPESHSSEDIGSFMMFANDEHSVKKSIASPISDPLQVDKFQNSVDVFMDRTITECEPELEVCYKESSYHDVKDICVDKGVFTKHKFMFEESVDGKAYNFFPVESFDDNQKPKDNTGIKVLDLPETXESDQVSLNHDQHNDXMHKXDGEIEDXIDNVTKVMDLHEDIHDSMPTDDKDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4Y4</accession>
    <name>A0A392N4Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nudix hydrolase 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015837</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028373">
        <property type="protein sequence ID" value="MCH94870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047631">
        <property type="term" value="F:ADP-ribose diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.30:FF:000016">
        <property type="entry name" value="nudix hydrolase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003293">
        <property type="entry name" value="Nudix_hydrolase6-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040618">
        <property type="entry name" value="Pre-Nudix"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994:SF13">
        <property type="entry name" value="FI03680P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13994">
        <property type="entry name" value="NUDIX HYDROLASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18290">
        <property type="entry name" value="Nudix_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01356">
        <property type="entry name" value="GFGPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pre-nudix hydrolase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12224" checksum="95901D18ED6281C8" modified="2018-12-05" version="1" fragment="single">AFASMLCLSLSHWKKKGKKGVWLKLPLEQSDLVPIAVKEGFQYHHAEPGYVMLTYWIPEGPCMLPANASHQVGIGGFVINDNDEVLVVQEKHCSPATLGLWKIPTGFIHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5T6</accession>
    <name>A0A392N5T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CLIP-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029124">
        <property type="protein sequence ID" value="MCH95167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="14713" checksum="0104BAFAD522101B" modified="2018-12-05" version="1" fragment="single">IVGRLSQEELMAQLPSFLPALFEAFGNQSADIRKLTIPSTHPSLQLPLWPQASNQPIALLPQPIGTFYRTSSIAAAVTSTILTVVFCLVDIYIMLGKAFLPYLEGLNSTQLKLVTIYANRISHARTGKSIDAAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7J6</accession>
    <name>A0A392N7J6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028640">
        <property type="protein sequence ID" value="MCH94978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7J6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11872" checksum="4126BB8A2BC31A5A" modified="2018-12-05" version="1">MRKLDGGALLARKTWDAGNSQKRKTNVLGKHREEEYGSCAKTPNYPHIILKSKGNLVFLQTNHMRVCKTRYAACKHAEDRSDFNTCRTEQPRATTLREPPLLTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9D7</accession>
    <name>A0A392N9D7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HUA2-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017423</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032318">
        <property type="protein sequence ID" value="MCH96437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12550">
        <property type="entry name" value="HEPATOMA-DERIVED GROWTH FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12550:SF49">
        <property type="entry name" value="PROTEIN HUA2-LIKE 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="13896" checksum="AB9DD9440CA3B6D6" modified="2018-12-05" version="1" fragment="single">MISLSTSNGCSGEKGALGIPASSSLTDGGVCIPQGSTPNTLVRNVSTSDSSNIHQNGSCSPDVLQKNILSGPVDEGKDGAVANQQSRSMDKSTEAGNAALLYFEAMLGTLKRTKENIGRATRIAIDCAKFGFATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9W6</accession>
    <name>A0A392N9W6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Long-chain acyl-CoA synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0016908</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031090">
        <property type="protein sequence ID" value="MCH95925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9W6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859">
        <property type="entry name" value="ACYL-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859:SF50">
        <property type="entry name" value="LONG-CHAIN ACYL-COA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH95925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="314" mass="34647" checksum="BEEB9C1294FB6B3C" modified="2018-12-05" version="1" fragment="single">MYELHFAVPMSGAILNNLNFRLDHKSLSVLLTHSESKLIFVDILSLSLTLNALSLFPKNTQIPELVLINDDTLAPHQIPSTPRNVNVINTYEGLITEGDPNFKWIRPESEWDPITLNYTSGTTSSPKGVVHCHRATFIVSLDSLIDWSVPVQPVYLWTLPMFHSNGWSYPWGIAAVGGTNICARRVDAPTIYRLIESHGVTHMCAAPVVLNMLSCFNRTEPLKKPVHVLTGGSSPPATILCRAESLGFDVCHGYGMTETCGVVVSCAWKREWNKFPATERARMKVRQGVRKVGVAEVDVVGPTGESVKRDGVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAL6</accession>
    <name>A0A392NAL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative methyltransferase NSUN5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033492">
        <property type="protein sequence ID" value="MCH96870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB-F_NOP2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM-dependent MTase RsmB/NOP-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7575" checksum="C744C2CAC5BF5EA3" modified="2018-12-05" version="1" fragment="single">MEGNGKIGNEQFNILQVKAILLDPSCSGSGTAASRLDHLLPSKVAGQDIDMERLNKLATFQRKALQHALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB25</accession>
    <name>A0A392NB25_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="3">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0017242</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010031922">
        <property type="protein sequence ID" value="MCH96258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022170">
        <property type="entry name" value="MUL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044231">
        <property type="entry name" value="SP1/SPL1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47568">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47568:SF2">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12483">
        <property type="entry name" value="GIDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="13" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="E3 Ubiquitin ligase MUL1-like" evidence="12">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH96258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8703" checksum="C95D77E5CFED9FEA" modified="2018-12-05" version="1" fragment="single">DDGTDHVHVAGARGATGFVYPIVSSKFDESGQTLVCGTLDSLRDKKILGLKRIERVLPVGTSLTVVGQIANGARYYRLLAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND11</accession>
    <name>A0A392ND11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Universal stress family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017934</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033715">
        <property type="protein sequence ID" value="MCH96942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010034920">
        <property type="protein sequence ID" value="MCH97421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044162">
        <property type="entry name" value="PHOS32/34"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31966">
        <property type="entry name" value="OS01G0783500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31966:SF18">
        <property type="entry name" value="UNIVERSAL STRESS PROTEIN PHOS32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UspA" evidence="1">
        <location>
            <begin position="17"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13389" checksum="3EE69CD57523ADE3" modified="2018-12-05" version="1" fragment="single">LEEDYDAFTATKSADLAKPLKDAQIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAARRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDEAVVAVKEDEEGEAVIKPVDVSHEHKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND43</accession>
    <name>A0A392ND43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018783</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035926">
        <property type="protein sequence ID" value="MCH97787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="26302" checksum="0619E21EC43350EC" modified="2018-12-05" version="1" fragment="single">MREGLRSRTRSGKGSGEGEVVHKKRVRVKNEVLVSGDEGLVERTKAVVEALFSGDEGLVEPTSLIEKKGETEALVSGDAGLVEPTSLIEKKGETEAXXXXXXXXXXPTSLIEKKGETEALVLGDEGLVEATLSIEKKGEVEALFSGDEGLVEPTSSIEKKGETGALVSGDESLVEPTSSIEKKGEVEALVLGDEVLVEPTSSIEKKGEVECAGVVECAGEVECDVKTKFDFDLNLSLSVNVDIDENEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDI5</accession>
    <name>A0A392NDI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018252</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034478">
        <property type="protein sequence ID" value="MCH97259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7844" checksum="091882E292F2A84C" modified="2018-12-05" version="1">MYTITHYKEQNGYRSHMLSVVNSMELSDFDALSWVRFSEHPHSDACLELFYYEFAVEVFALEGDGTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDT4</accession>
    <name>A0A392NDT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">G-type lectin S-receptor-like serine/threonine protein kinase RLK1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0018353</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034749">
        <property type="protein sequence ID" value="MCH97359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00028">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.90.10.10:FF:000013">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.90.10.10">
        <property type="entry name" value="Bulb-type lectin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001480">
        <property type="entry name" value="Bulb-type_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051343">
        <property type="entry name" value="G-type_lectin_kinases/EP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976:SF15">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE RLK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01453">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00108">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50927">
        <property type="entry name" value="BULB_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0430">Lectin</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1 4" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017487309" evidence="4">
        <location>
            <begin position="25"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Bulb-type lectin" evidence="5">
        <location>
            <begin position="30"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH97359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17500" checksum="ECA99BB21F980FA3" modified="2018-12-05" version="1" fragment="single">MASSILPFLLYSLILQFICVVAQTKSIIDIGDSFTAQTNNSTWLLSPSGDFAFGFLPLEDPDSFLLSIWYAKILNKTVVWYANGDNPAPKGSKVVLTYSDGLVLTSPNGDKLWNTEGLSIQVSRGVFNDTGNFVLEDVEFNILWETFKFPSDTMLPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE83</accession>
    <name>A0A392NE83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CNGC5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018450</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035018">
        <property type="protein sequence ID" value="MCH97455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="151"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="307" mass="34776" checksum="554273E4B5FDD9FF" modified="2018-12-05" version="1">MHWLKEGDLNTKFFHMSASARARKKKIEKLVNEADVEVRTQPEICEVALNYFDHLFKANTTSHDPILSLVAPKVSLEENEKLVAPITKEEVKIALFQMHPDKAPGPDGFNPAFYQHFWNLCGNDIFEAVKEWLERGYFPSSLNETNICLIPKCENPISMKDMRPISLCNVLYKMVSKLLANRLKDCLGKCVSEEQSAFVEGRSILDNALIAIEIIHALKRKTRGVAGEIVLKIDISKAYDKVDWGFLRGMLERLGEGVETRRPSFSLSLHPSDRGLINSYQEISCTRRFTWSKDLQGGTSGVPPTFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK01</accession>
    <name>A0A392NK01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein IQ-domain 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0021245</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the IQD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042592">
        <property type="protein sequence ID" value="MCI00228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NK01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295:SF139">
        <property type="entry name" value="IQ CALMODULIN-BINDING MOTIF PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295">
        <property type="entry name" value="IQ-DOMAIN 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="19049" checksum="413AB63009800165" modified="2018-12-05" version="1" fragment="single">MQAFCSAIARKALRALKALVKIQALVRGYLVRKRVAATLHSMQALMRAQAVIRSRRARNSIDKENVYQSEILGRKHVQIFDETRNEQHNKWLPNSSSKFAPNPKIVVVDPHRSRSRSTMSESGDDLHDYYEATSSSLPYPIPRRISVHECQNSQDFDWSVDNVNNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKA0</accession>
    <name>A0A392NKA0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041456">
        <property type="protein sequence ID" value="MCH99831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="1">
        <location>
            <begin position="32"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19924" checksum="02D1F7AC221D31D6" modified="2018-12-05" version="1">MASPNLEGLSLHETEEEGFSFEFDEEGEEQVDFQWCLVGRFLCDKPIHFKSMKIRMADLWRPVRGVNIKEAKPGIFLFSFAHPLDMEEVLKGAPWTFDNNMLIMDRVQIGMQIEHIPLFHAEFWVQIHNLPVGLMKESVGTKLGNYIGTFVEEDGPGKLELMYGGREGDYLRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL47</accession>
    <name>A0A392NL47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication protein A1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021627</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043720">
        <property type="protein sequence ID" value="MCI00607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04480">
        <property type="entry name" value="RPA1_DBD_A_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003871">
        <property type="entry name" value="RFA1B/D_OB_1st"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02721">
        <property type="entry name" value="DUF223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Replication protein A 70 kDa DNA-binding subunit B/D first OB fold" evidence="1">
        <location>
            <begin position="6"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="16095" checksum="4228CA545AC7F5A2" modified="2018-12-05" version="1" fragment="single">MARNIEFIKDINDRKDLWKVAVKVKDKWSCIKDGKEFYEMVVVDSKGDDIFVVIPNDLKLKFEKEIPIIVNNTYCMQNFQVSKNDNQFKASHHPFKLRFNGGTKVSDVNVHKIADPVTKFKPFTEIINGDFREDYLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL57</accession>
    <name>A0A392NL57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021637</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043748">
        <property type="protein sequence ID" value="MCI00617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9625" checksum="AD0460923F590AE6" modified="2018-12-05" version="1" fragment="single">MLESGSTPDYASEEDYKSLPADLQDEECRCPTPTRARHWDTPNPRSVRPSQNSMVPLLDNIYWKELSVLLYVWVAFLIVQIIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRK2</accession>
    <name>A0A392NRK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucose and ribitol dehydrogenase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022797</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047026">
        <property type="protein sequence ID" value="MCI01769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48107:SF16">
        <property type="entry name" value="NADPH-DEPENDENT ALDEHYDE REDUCTASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48107">
        <property type="entry name" value="NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14298" checksum="98D44E1E6078A10A" modified="2018-12-05" version="1" fragment="single">GKIAVITGGDSGIGRAVCNLFSLEGATVAFTYVKGDEDKDAKDTLEMIKNAKTADAKDPMALAADLGFDENCKRVVDDVVNAYGHIDILVNNAAEQYECSSVEEIDEPRLERVFRTNIFSYFFMTRFVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUM9</accession>
    <name>A0A392NUM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052466">
        <property type="protein sequence ID" value="MCI03528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14128" checksum="EB71D690EE74DB90" modified="2018-12-05" version="1" fragment="single">ALVVTIAVTAGIVVTFVGTIAVTFVVTIAVIIVVIFVVTIAVIFVVTIAVTGEGIVVVLVVATTHIVGLQGVHHTVEATIIRHNTHPMLEGLGGRDLGPFLSLLIAQTGGMLVDLGEMWLACLVSICEQEPVVLLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWI4</accession>
    <name>A0A392NWI4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024843</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053328">
        <property type="protein sequence ID" value="MCI03802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="19"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14649" checksum="96430A464A32CAD7" modified="2018-12-05" version="1" fragment="single">WPPGKKIPSSATDDATETFSVKSAYTVLENALGVSVQSSVVSNKALTKVWKSLAPSKVIAFSWQLLQDRIPTRQNLFRRHVIKDLSNTLCIFCESTIELVDHLLVTCDLSSLMWYSVVRWLGFRLFCPGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZG0</accession>
    <name>A0A392NZG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhamnogalacturonate lyase B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025606</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055773">
        <property type="protein sequence ID" value="MCI04559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010325">
        <property type="entry name" value="Rhamnogal_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06045">
        <property type="entry name" value="Rhamnogal_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7072" checksum="C63721E94A1229BF" modified="2018-12-05" version="1" fragment="single">MGGNMGLWDKDCVNGDVGTSREVDNRQRNMPLPDDRIPPRGQALAYPEAVLLVNPIEPELKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZM7</accession>
    <name>A0A392NZM7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0025666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055980">
        <property type="protein sequence ID" value="MCI04619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="111"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24871" checksum="9574F38021B1A776" modified="2018-12-05" version="1" fragment="single">MHVKFDEFEEQPTSTIIDEEEDIPFGSKDHDIEPESTPQVPPKTWKKVNYHPQELIIGNTEDGIKTRRSLQSTENLLRMISQIEPRNIEEAIIDESWVKSMKEELLQFEKNEVWELVPPPQDHSIIGTRWVFRNKLDESGKISCNKARLVAQGYNQQEGIDYEETYAPVASAFLNGFLNEEVYVHQPPGFVDQHKPNHVFKLTKALYGLKQAPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZQ8</accession>
    <name>A0A392NZQ8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0025696</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010056087">
        <property type="protein sequence ID" value="MCI04649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039525">
        <property type="entry name" value="RNF126-like_zinc-ribbon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14369">
        <property type="entry name" value="Zn_ribbon_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="E3 ubiquitin-protein ligase RNF126-like zinc-ribbon" evidence="8">
        <location>
            <begin position="28"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI04649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="275" mass="30846" checksum="8BAE1E784A77965D" modified="2018-12-05" version="1" fragment="single">ESRSKSSICDLWRTHSKTNIMDETMAARYWCHACSQIVSPIMGMEMKCPVCQGGFVEEMSSATGISDLPNIPEPDFGSDRSPSLWAPILLGMMGNPRLRRRLRRIELEEDYDSGNRDDDNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENTTDXXXXXXXXXXEREREHVILINPFNQTIIVQGSYDSNRDQNDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZT6</accession>
    <name>A0A392NZT6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025726</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056159">
        <property type="protein sequence ID" value="MCI04679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="138" mass="15166" checksum="CAB07ADDF121EA46" modified="2018-12-05" version="1" fragment="single">EGRNPGKRPFVAAITGGPIKPLNNPTTIREKQKRGKKWRPTTASITGGPSNPKGRSGGTTKRRVAEMCSVRTEASGSKEKGRSMLCFNDDVSRILIDQGSSCDVMYQELFEKLGLKKEDLCQYEGTDLQGFNGFTIRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0W5</accession>
    <name>A0A392P0W5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-D-xylosidase 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0026108</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057406">
        <property type="protein sequence ID" value="MCI05059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009505">
        <property type="term" value="C:plant-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009044">
        <property type="term" value="F:xylan 1,4-beta-xylosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031222">
        <property type="term" value="P:arabinan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="entry name" value="Glycoside hydrolase family 3 C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044993">
        <property type="entry name" value="BXL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002772">
        <property type="entry name" value="Glyco_hydro_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721:SF27">
        <property type="entry name" value="GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721">
        <property type="entry name" value="SUGAR HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01915">
        <property type="entry name" value="Glyco_hydro_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="Beta-D-glucan exohydrolase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 3 C-terminal" evidence="3">
        <location>
            <begin position="78"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI05059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="264" mass="28673" checksum="7E739A47B8C61700" modified="2018-12-05" version="1">MDVECGDYFTNHSKSAVLQKKVPISHIDRALHNLFSIRIRLGLFDGNPTKLKYGSIGPNQVCSKQNLNLALEAARSGIVLLKNTPKTLPLPKSTNSIAIIGPNANSSSKVVLGNYFGRPCNLVTIKQGFESYAKNIVDHYGCSDGTKCLNAEIEQAVEVAKKVDYVVLVMGLDQSQERESXXXXXXXXXXXXXXXXXXXXXXSKRPVILVLLCGGPVDISFAKFDDKIGGILWAGYPGELGGLALAQIVFGDYNPGEFSSMLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3Y4</accession>
    <name>A0A392P3Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0027514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061888">
        <property type="protein sequence ID" value="MCI06454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13117" checksum="FF70D245E8AE16ED" modified="2018-12-05" version="1">MRLVNSKNLKYPTQPLLERRIKEPIPENPTVLFSNEPPDVFLEYMRLMKAVASGTEASEAKSTEDKKATETAATEDIGASETKDSEKVKGPEATTTEVKPTIEKDKGKVVKKPRTVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6A7</accession>
    <name>A0A392P6A7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0028672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066000">
        <property type="protein sequence ID" value="MCI07603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6A7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF144">
        <property type="entry name" value="RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="7"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17586" checksum="742C7A6FA2AE4458" modified="2018-12-05" version="1" fragment="single">MALQYSFTYDVFISFRGEDTRYGFTSHLNAALNQRGIHTFTGDVEGEEIMLSLLKAIEVSRIAIIIFSKNYAFSRWCLDELTGILDCYENSKIKVLPVFYDVDPSDVRHGTGSYGEALAKHEEGLHEEDDKERLNKWRTSLHKAASLNGYYFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC38</accession>
    <name>A0A392PC38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protein grpE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0030810</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GrpE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073658">
        <property type="protein sequence ID" value="MCI09721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.20.20:FF:000006">
        <property type="entry name" value="GrpE protein homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_CC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="GRPE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237:SF27">
        <property type="entry name" value="GRPE PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="Coiled-coil domain of nucleotide exchange factor GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="41"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI09721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19082" checksum="B2753D4C6DF39D76" modified="2018-12-05" version="1" fragment="single">DSSDGAVAVEDSTGDDEFTDAGEIPSSPLLVLLQSYKEALVNNDEVKVAELESSLKSIDDEIAGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGNPFDPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDT1</accession>
    <name>A0A392PDT1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0031384</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endomembrane system</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010075652">
        <property type="protein sequence ID" value="MCI10291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021319">
        <property type="entry name" value="DUF2921"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33389">
        <property type="entry name" value="FAMILY PROTEIN, PUTATIVE (DUF2921)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33389:SF18">
        <property type="entry name" value="OS01G0677900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11145">
        <property type="entry name" value="DUF2921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="122"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="SWEET-like" evidence="11">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="unsure residue" description="D or N" evidence="12">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF11145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI10291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="23829" checksum="8DB0946E17FE03A5" modified="2018-12-05" version="1" fragment="single">MDMEIVMVLISTTLSCVFIGLQLYHVKRNPNVLPLISIFMMSILTLGHMIPLVLNFEAILAQDPNNKNFVFGYVGWLEVNEIAVRIITMVAFLLQFRLLQLTWSSRKTDESENRLWIAERKATYVTFPLYAAGLLISLLLKVKRNDFQNDSSWENMKSYGGLVLDGFLVPQVILNLTRNYARLSDESYFYANPNADFYSTTWDIVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE65</accession>
    <name>A0A392PE65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074795">
        <property type="protein sequence ID" value="MCI10042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF97">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="1">
        <location>
            <begin position="21"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13569" checksum="E5C19DCAA5F1D12C" modified="2018-12-05" version="1">MPPRVAPPDPVLDNSSPYFVHPGDGPSSVTVTPLLTGSKYHSWSRSMKLALGAKMKLDFVDESLPPIVDAFDPSFRAWNRCNQLVSSWILNYVSPSIAQSVVFMENTIATWNDICMNGSLKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQM3</accession>
    <name>A0A392PQM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ras-related protein RABA3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0035148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090620">
        <property type="protein sequence ID" value="MCI14022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001447">
        <property type="entry name" value="Ras-related protein Rab-1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050209">
        <property type="entry name" value="Rab_GTPases_membrane_traffic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47979">
        <property type="entry name" value="DRAB11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9368" checksum="8043D9FDB4C48D7B" modified="2018-12-05" version="1" fragment="single">MVQVEKKQEKIDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQW2</accession>
    <name>A0A392UQW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010949437">
        <property type="protein sequence ID" value="MCI78366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2963" checksum="6CB3E545DD080C60" modified="2018-12-05" version="1" fragment="single">MEYGRTEERFALGENFIGGWSIIRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URI3</accession>
    <name>A0A392URI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099707</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010950928">
        <property type="protein sequence ID" value="MCI78437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8258" checksum="D8BA17F1EF638CC1" modified="2018-12-05" version="1" fragment="single">FAVNMTSAQARLRQARNAKKKAAEATGTSSSMNLEVSSDRTSPAPSVEIVHEKRSREDDLGDSHASRKNRRMDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUX0</accession>
    <name>A0A392UUX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099952</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010956290">
        <property type="protein sequence ID" value="MCI78681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5021" checksum="58970B111DFB2762" modified="2018-12-05" version="1" fragment="single">MKQLETKRVEKIAGTKMVAGDERVVRVEIDRVPSFFVLSLFLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWR9</accession>
    <name>A0A392LWR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000162</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000097">
        <property type="protein sequence ID" value="MCH79413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="2">
        <location>
            <begin position="164"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="370"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="523" mass="59813" checksum="5A54EE70C4B939F9" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWS6</accession>
    <name>A0A392LWS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000083</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000046">
        <property type="protein sequence ID" value="MCH79335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="82"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13116" checksum="C438709D63A8166F" modified="2018-12-05" version="1">MVINETPNHMMNPQPPVAPPLLPDEFGDGDGEADSEAEEVSLPAAKKAVAWKQKAHNYYLWETSCECLAMTLPSSHEIMYSWFIKLSISIVLLHTSSIFSFCITLYKIILIHHFTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXA3</accession>
    <name>A0A392LXA3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000331</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000204">
        <property type="protein sequence ID" value="MCH79579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF28">
        <property type="entry name" value="F5J5.12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="3">
        <location>
            <begin position="88"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="350"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="560"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="490"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="360"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="569"/>
            <end position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH79579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="644" mass="72251" checksum="2B910C63D4A5158D" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXD5</accession>
    <name>A0A392LXD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ras GTPase-activating protein-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000286</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000179">
        <property type="protein sequence ID" value="MCH79535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002075">
        <property type="entry name" value="NTF2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018222">
        <property type="entry name" value="Nuclear_transport_factor_2_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039539">
        <property type="entry name" value="Ras_GTPase_bind_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10693:SF58">
        <property type="entry name" value="OS02G0131700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10693">
        <property type="entry name" value="RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02136">
        <property type="entry name" value="NTF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50177">
        <property type="entry name" value="NTF2_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="NTF2" evidence="3">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="214"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="231"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="252"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="279"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH79535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="34565" checksum="689E072452193FE2" modified="2018-12-05" version="1">MITSDLDKIDEHIKEFNVDTVEIKSINSLNCWGLGVHLVVMGSIKLKKYAICRDFVQTMYLAPHGKKGEKRGYFILNDILHIITHHYYDVRDHSKPVLPLKSQDIDPRFLSESKIPPPPPPPLTVTDNGNLDEAKVEKIDDDLMSTMENRIEFPPLPRKQQPLRQRGFDPSVWKAPLAQDEASSSNSASVANADDTIHENIDAPKIEEPVIYQEEPSQISDKPDDSALPTSSTSTSRGRGIGRGRNNSIERGSGDRNKGKEIEEPVVVQVEPYASALPTSSTSRGRGRGRNNSSKRGSGDRSKGMENQNTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZD5</accession>
    <name>A0A392LZD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000681">
        <property type="protein sequence ID" value="MCH80098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="9"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="380"/>
            <end position="528"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="733"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="733" mass="84192" checksum="C74D2AC27DEA3622" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZI8</accession>
    <name>A0A392LZI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Late embryogenesis abundant protein D-34-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0000490</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LEA type SMP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000323">
        <property type="protein sequence ID" value="MCH79734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042971">
        <property type="entry name" value="LEA_SMP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007011">
        <property type="entry name" value="LEA_SMP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31174:SF34">
        <property type="entry name" value="LATE EMBRYOGENESIS ABUNDANT PROTEIN 47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31174">
        <property type="entry name" value="SEED MATURATION FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04927">
        <property type="entry name" value="SMP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="SMP" evidence="4">
        <location>
            <begin position="63"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="SMP" evidence="4">
        <location>
            <begin position="115"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="131"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH79734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="15747" checksum="2A3593B8C7752E55" modified="2018-12-05" version="1">MSQGQPRREEGIKYEDGAAAGMQAAATKNERDGNVGHNDGGDGGVSISETDVSGRHVISESIGGQKPVEWSDAAAIQAAEVRATGRTNIVPGGVAAAAQSAATLNSRTEKDEDKTKFADILADATTKLPKDRAATRRDXEGVTGVEMRNEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZJ0</accession>
    <name>A0A392LZJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon opus</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001048">
        <property type="protein sequence ID" value="MCH80430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="263" mass="28870" checksum="379F95A05A08993C" modified="2018-12-05" version="1">MSSPPSISDIADSINALAHTQRSFQNNIAASIDSLTTDFVGLRARLGPPGFPSPTFDVAPVPATSIKLDIPRFDGVDPLGWIFKITLFFDYHRTSNDQRLRIASFYMEAGDPPGGARVPAGDADASNQSCEVTGREMLDRPSYAHKPPPPPIPASYSSSFKPTISVIPPKTQPPVKRLSPDELQARRDKGLCYNCDERYQCGHRCKRLFHLLNEESEEQNDDASAFVFQGEQSDPIEINSVEPESIPDPAQISLHALMGHTIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZZ7</accession>
    <name>A0A392LZZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0001370</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the disease resistance NB-LRR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001240">
        <property type="protein sequence ID" value="MCH80600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZZ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF198">
        <property type="entry name" value="RPP4C3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0611">Plant defense</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="8">
        <location>
            <begin position="163"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="9">
        <location>
            <begin position="571"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="26"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="777"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH80600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="777" mass="88273" checksum="23CE0DC4287E6DDC" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M017</accession>
    <name>A0A392M017_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cysteine-rich RLK (Receptor-like protein kinase) 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001390</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001267">
        <property type="protein sequence ID" value="MCH80620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M017"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF440">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="188"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="511" mass="57650" checksum="C558BEE2DB582A9C" modified="2018-12-05" version="1">MNVEFDEVHGRILGRNPIPQIGEVFAEVRREESRTQVIGTAREINGLYYFDENLLGNKKASGLHSTSSPLSVSDQAMFHKDTTTPIVSPAEIQSDSPSEGPVDNSSFTSSPEKNIPDLDVPIADRKVPRTCTKHPISNYLSYDKLSHTHKAYVSRISNVFVPRTVQEALGDPNWKLAVKEEMDALRKNNTWSITDLPQEKKKAVGCKWVFTVKCKADGSVERYKARLVTKGFTQIHVNFNWALHQFDVKDLGKLKYFLGMEFARSKEGIFLNQCKYILDLLKETGMMGCRAVETPMDPNVKLKAVSENEVVDRERYKRLAGPAHFEAIFRILRYLKGTPGKGLLFKNRGHIQVEAYTDADWAGNINDRRSTSGYCTFVSGKLVTLKSKKQSVVARSSAEAEFRSVAHGFCEVLWIKKFMEELKIPGPTPIKAYCDNKAAISIAHNPVQHDRTKHVEVDKHFIKEKIDSGEICMSYIPTTSQVADVLTKSLPKRQFDTMVCKHAMNDIFMPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M050</accession>
    <name>A0A392M050_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pre-rRNA-processing protein TSR2-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001269">
        <property type="protein sequence ID" value="MCH80621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M050"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4049" checksum="1AC9734C43D296DA" modified="2018-12-05" version="1" fragment="single">VVEEPMIRHEECLSGNFGSVERLREASRNPTAYPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0E0</accession>
    <name>A0A392M0E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001483">
        <property type="protein sequence ID" value="MCH80777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9881" checksum="86F2AE0E4DDD7890" modified="2018-12-05" version="1">MVASHKRGMSYTPNGVCVFGICIVLATSLFHESSLHVRERPPFIASLCSTVIVLASWSYAVYGFVMLHGHSPRVLELCRLWLRYAPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0P9</accession>
    <name>A0A392M0P9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sister chromatid cohesion PDS5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0001635</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001575">
        <property type="protein sequence ID" value="MCH80860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0P9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035825">
        <property type="term" value="P:homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039776">
        <property type="entry name" value="Pds5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663">
        <property type="entry name" value="ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663:SF3">
        <property type="entry name" value="SISTER CHROMATID COHESION PROTEIN PDS5 HOMOLOG C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20168">
        <property type="entry name" value="PDS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0498">Mitosis</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="215"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="215"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="296"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH80860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="308" mass="34617" checksum="2858238162690ACB" modified="2018-12-05" version="1" fragment="single">MRKSLSPLQKALIAEKFVKHSDFNVHVALASCFSELTRTTAPDAPYDDEQMKVVFGLIVSSFKNLDDKPCQWHLKRIKILETVAKVKLCRLMLDLECYDLILDMFQYFLKTISEHHPKTVFLSMETIMILCLKEVEVIPRELLPTILNSLKKDNEFSPIARKLGETVLKRCATTLKPYLQQAEKISGTLDDYSEVLASVCRDASDDLTQNDVHDCKSAEEPVEESAHVDTEITKEATPPQEDNAAGDRSPKSVMSNDIAQAGEDDSLVDSTSLKKQDGTDSPVLPEGNEEPDDLDTEKVDSKEQKLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M132</accession>
    <name>A0A392M132_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001744</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001704">
        <property type="protein sequence ID" value="MCH80966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M132"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13830" checksum="E858F918DEF2C4FB" modified="2018-12-05" version="1" fragment="single">YGAVKPDDCYWSLGTGLLETISFEDVILKLAPEKDGWVITYMHDFEGYQQQMLESYMLRKDGRSNILLRRILMPGMLEECFTNPSNKEQIEQRMVQIKKDPSQPDLASGIIKIVKLTELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1M5</accession>
    <name>A0A392M1M5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NYNRIN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001924">
        <property type="protein sequence ID" value="MCH81139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF1">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="158"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="450" mass="51968" checksum="EB427689A48A534D" modified="2018-12-05" version="1">MYKVTWPNHVPLVEINRLEKPAHCLSVEDESDEKPWYHDIKRYLQRQEYPASASNGDKRXXXXXXXXXXXDGEVLYKRNYDLVLLRCVDKKEADKLIEEIHEGSFGTHANGHAMAKRILRAGYYWLTMEADCITHVRKCYKCQIYADKIHVPPTHLNVLTSPWPFSMWGXXXXXXXXXXXXXXXXXXXXXIDYFTKWVEAASYANVTKQVVAKFIKKEIICRYGVPNKIITDNGSNLNNQTMKELCVDFKIEHHNSSPYRPKMNGAVEAANKNIKKIVQKMVETYKDWHEMLPFALHGYRTAVRTSTXATPFSLVYGMEVVLPIEVEIPSLRVLMEAKLEEAEWVQTRLDQLNLIEEKRMTALCHGQLYQQRLKRAFDKKVRPRQFKEGDLVLKVILPIHKDARGKWTPNYEGPYVVKKAFSGGALILATMDGEEFPLPVNSDAVKKYYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2N3</accession>
    <name>A0A392M2N3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter B family member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002315</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002405">
        <property type="protein sequence ID" value="MCH81526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2N3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13418" checksum="979183BEF7A56D4E" modified="2018-12-05" version="1" fragment="single">MIAFVSGFVVGFTAVWHMALVTLVVPMIAVVETIHTTHTTTLAKLSSKSQEVLSQASNIVEHLCKSESQALQDYSEVEQDACNKKSNQQGNFSTVTGNDTEMIGLQEWLAPQERKRVANSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M328</accession>
    <name>A0A392M328_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002595">
        <property type="protein sequence ID" value="MCH81655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M328"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055336">
        <property type="entry name" value="At4g00755-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39741">
        <property type="entry name" value="F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39741:SF2">
        <property type="entry name" value="F-BOX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12937">
        <property type="entry name" value="F-box-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="23"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14429" checksum="A1846406FF5A7FEC" modified="2018-12-05" version="1">MMFGNMSEVKIKLDVIQWLGSDMSIKVLSYLDDPCDLLRVSFVSRSWNQFVIENGLCKQLCFKLFPEMSDVVHSIGVDNIIEPLSNMLDSHTNWECLEEIIKSMLSWLLTSIFHVQSSSTTDFTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M434</accession>
    <name>A0A392M434_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0002307</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010002397">
        <property type="protein sequence ID" value="MCH81518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000225">
        <property type="entry name" value="calcium-dependent protein kinase 28-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050205">
        <property type="entry name" value="CDPK_Ser/Thr_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24349">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="9 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="12" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0519">Myristate</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH81518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="252" mass="28651" checksum="571CD05EE9972F84" modified="2018-12-05" version="1" fragment="single">MVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCEGGELLDRILGKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSNKDDSALKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVRKLLVKDPRARLTAAQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4L8</accession>
    <name>A0A392M4L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003368">
        <property type="protein sequence ID" value="MCH82219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="394" mass="45405" checksum="60FF8F5A2B6F9AA4" modified="2018-12-05" version="1" fragment="single">MSVLVNGSPTEEINIRRGLKQGDPLAPLLFLIVAEGLGALMRMVVDRGRFKPFSVGRGGMLISILQYVDDTLCIREATVENLWAVKAVLRGFEMASAEFLNCRIDRFPFKYLGLPVGANPRLFSTWLPMLDTIRRRLGSWGNKFISLGGRIVLINAVLSAIPIFFLSYMKMPMKVWREVVRIQHNFLWGGLTKKRRISWVKWKDLCKPKKEGGLGIRNLRFVNLSLLAKWRWRLLLEEEEVWKHVIMAKYGDGALGNVTLGDTVFGNVCSAWWGDLCKLDKGDGWFNQVVTKNVGRGDSTMFWKDVWAGYQTLEQQFPRLFGISAQQHEKVANMGSWENGVWRWGLLWRRQFFVWENDLLRQLEEVLTNSTITEAVDRWVWKPNEEDGFSVKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4S8</accession>
    <name>A0A392M4S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003138</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003534">
        <property type="protein sequence ID" value="MCH82335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="192"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="208"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="25732" checksum="C9345D1C0CE3064B" modified="2018-12-05" version="1">MEPALRENQLLRDTAAVMRMLETALVLGEERGSSAKDLEKLEAKSEKLKAKLLGYENKLAGLREKKRVFGEQTTELRLAKEVLEKARKDLHELESRGAEEKRKLVEENDILKAAMAPAGDEHKAAEGLVTRADLVGKIAELAKDVIEGSRYSFYNVVDQLKVLNPEVDLITEGMGVLMSVKDGQIVVPQVYKDMEAEEAEEDGKLMQDDNDGEDGEHGEDGEHEDESNGNNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M520</accession>
    <name>A0A392M520_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Paladin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003760">
        <property type="protein sequence ID" value="MCH82492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16383" checksum="6206C3311366811F" modified="2018-12-05" version="1">MANXXXXXXXXXXXXXXXXXAVIRSLVRVLEGGVDGKRQVDKVIDKCASMQNLREAIGTYRNSILRQPDEMKREASLSFFVEYLERYYFLICFAVYLHSERDMLHSSTAGHSSFSDWMRARPELYSIIRRPVECGCIFIESN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5V3</accession>
    <name>A0A392M5V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004016">
        <property type="protein sequence ID" value="MCH82671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33625">
        <property type="entry name" value="OS08G0179900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33625:SF4">
        <property type="entry name" value="OS08G0179900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13110" checksum="5EC98DC60AE0A241" modified="2018-12-05" version="1">MQNPAVTSFFESQLAAAESTNGATFFGSEAVETPEKEKANETQSDNVFDFMGILQNLKLTVTEMVSSMSNFFQNIFPTAEKDKSSADADGASFMDYKNMMGGSFMGLAVMVIMVVLMKRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M659</accession>
    <name>A0A392M659_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004376">
        <property type="protein sequence ID" value="MCH82917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M659"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7836" checksum="F524D6300769AB79" modified="2018-12-05" version="1" fragment="single">MGRISGRRSYLGTRIRDVKAISTIVLSAMIGKFLRNQKQGFLAGRGDVSLGENHVRRFLAPASKFRFVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6E0</accession>
    <name>A0A392M6E0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">AT-hook motif nuclear-localized protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003821</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">The PPC domain mediates interactions between AHL proteins.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004513">
        <property type="protein sequence ID" value="MCH83007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003680">
        <property type="term" value="F:minor groove of adenine-thymine-rich DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11378">
        <property type="entry name" value="DUF296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.80">
        <property type="entry name" value="Hypothetical protein, similar to alpha- acetolactate decarboxylase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039605">
        <property type="entry name" value="AHL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005175">
        <property type="entry name" value="PPC_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31500">
        <property type="entry name" value="AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31500:SF9">
        <property type="entry name" value="AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03479">
        <property type="entry name" value="PCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117856">
        <property type="entry name" value="AF0104/ALDC/Ptd012-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="PPC" evidence="6">
        <location>
            <begin position="10"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU367031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH83007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="9551" checksum="83BA7F90572D3646" modified="2018-12-05" version="1" fragment="single">MPGSAGVGFTPHVVHVAIGEDISAKVIALSQVHARALCVLSGFGSVSAVTLGSLLPTENGSIRDRAGGISVMLSSPEGRVFGGRVAGQLIASAPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6L3</accession>
    <name>A0A392M6L3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-binding mitochondrial carrier protein SCaMC-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004143">
        <property type="protein sequence ID" value="MCH82753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF-hand" evidence="1">
        <location>
            <begin position="29"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14557" checksum="8C74F728B108A801" modified="2018-12-05" version="1">MGGGSIKKKNFKNVSIDHVLEALGETKEERDIRIRSLFNFFDAGNNGYLDYGQIESGLSALQIPAEYKYARELFKVCDSNSDGRVEXXXXXXXXXXXXXXXXCIFQAIDVEHSGSILPEELWDALERAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6R4</accession>
    <name>A0A392M6R4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphoglycerate mutase family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004487">
        <property type="protein sequence ID" value="MCH82991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6R4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051710">
        <property type="entry name" value="Phosphatase_SH3-domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16469">
        <property type="entry name" value="UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16469:SF27">
        <property type="entry name" value="UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="143" mass="16201" checksum="ED2D74BA764BACFA" modified="2018-12-05" version="1">MMSTMAIRLEVTPKDGNWGFDISEREAMLPKGTVDNTVERVYKELPVWEEELSRTRARYEQIVKDLADKYPTENLLLVTHGEGVGVALSSFRKGAVVCEVDYCGYVELRRPIFKKDQSFTAGEFEVLTNAGQTGVKYSDLKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M777</accession>
    <name>A0A392M777_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">sucrose synthase</fullName>
            <ecNumber evidence="3">2.4.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0003988</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>an NDP-alpha-D-glucose + D-fructose = a ribonucleoside 5'-diphosphate + sucrose + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16241"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17992"/>
            <dbReference type="ChEBI" id="CHEBI:37721"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:76533"/>
            <dbReference type="EC" id="2.4.1.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyltransferase 1 family. Plant sucrose synthase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.13" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010004757">
        <property type="protein sequence ID" value="MCH83171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M777"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016157">
        <property type="term" value="F:sucrose synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005985">
        <property type="term" value="P:sucrose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1230:FF:000001">
        <property type="entry name" value="Sucrose synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000004">
        <property type="entry name" value="Sucrose synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000368">
        <property type="entry name" value="Sucrose_synth_GT-B1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012820">
        <property type="entry name" value="Sucrose_synthase_pln/cyn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056736">
        <property type="entry name" value="SUS_EPBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45839">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45839:SF7">
        <property type="entry name" value="SUCROSE SYNTHASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00862">
        <property type="entry name" value="GT-B_Sucrose_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24862">
        <property type="entry name" value="SUS_EPBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Sucrose synthase EPBD" evidence="8">
        <location>
            <begin position="29"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Sucrose synthase first GT-B" evidence="7">
        <location>
            <begin position="139"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF24862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH83171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="428" mass="49119" checksum="420FACD28113E059" modified="2018-12-05" version="1" fragment="single">SNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHGKESLQPLLEFLRLHNYNGKTIMLNDRIQNLNSLQHVLRKAEDYLITIAPQTPYSEFEHKFQDIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLRRIKQQGLDIKPRILIITRLLPDAVGTTCGDRLEKVYDTEYCHILRVPFRTEKGIVRKWISRFEVWPYLETFSEDVAHELAEELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDLYWKKFEDKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTETERRLTSFHPEIEELLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7E2</accession>
    <name>A0A392M7E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004027">
        <property type="protein sequence ID" value="MCH82678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="10027" checksum="43EEC3BFDAE792B7" modified="2018-12-05" version="1">MQHQEISQNQVMVAERLPAMKQARKGRQFIAQSKAWRRLVAGGRYWSLGDHMKFWVREEHMNPRLKRQIGGLATKPRFSCSALGFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7M0</accession>
    <name>A0A392M7M0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exocyst complex component 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003328">
        <property type="protein sequence ID" value="MCH82184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7M0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009976">
        <property type="entry name" value="Sec10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048627">
        <property type="entry name" value="Sec10_HB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12100:SF0">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12100">
        <property type="entry name" value="SEC10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07393">
        <property type="entry name" value="Sec10_HB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exocyst complex component Sec10-like alpha-helical bundle" evidence="1">
        <location>
            <begin position="6"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="18654" checksum="38C323A82B930CA0" modified="2018-12-05" version="1">MNSSLQYFANSISRLLLPVDGAHAAACEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKATDYKAPDDGMAPDHRPTTACTRVVAYLSRVLESAFTALEGLNKQAFLSELGNRLHKVLLTHWQKYTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7V5</accession>
    <name>A0A392M7V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polynucleotide adenylyltransferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005295">
        <property type="protein sequence ID" value="MCH83506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052191">
        <property type="entry name" value="tRNA_ntf/polyA_polymerase_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43051">
        <property type="entry name" value="POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43051:SF1">
        <property type="entry name" value="POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13780" checksum="3BE08E7F747A6786" modified="2018-12-05" version="1" fragment="single">IGLLAFHLALVNNPQDALVVWVFASVLYHGEWEEGIKFANEHAKMCVNFAPEIKRSSIGKSVEEIAEAVTKLASLAIDSIHALANNDCLSQSQSRYPSVPRSHMLGLCDTCFWLDVGNYQEFEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M824</accession>
    <name>A0A392M824_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Inter-alpha-trypsin inhibitor heavy chain-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005198">
        <property type="protein sequence ID" value="MCH83441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M824"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46503:SF9">
        <property type="entry name" value="INTER ALPHA-TRYPSIN INHIBITOR, HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46503">
        <property type="entry name" value="INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13582" checksum="71CB089220C16F3F" modified="2018-12-05" version="1" fragment="single">MAGQFSSSVEFGLNLSKRIRHTPVPLPEMTRSSKEFLPTAPMCYAVIPDPQVVDNPDIRSYQPYVYGLCDPPALIPLQLHGIEMEVECCLDTAFVTVTGRWRVHCVTGSSLCDCQVAIPIGEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8L4</accession>
    <name>A0A392M8L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004447</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005494">
        <property type="protein sequence ID" value="MCH83621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="46"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="108"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="21539" checksum="9E34E7C897D855BA" modified="2018-12-05" version="1" fragment="single">MRHVVTKSSLDDATIEQTIKEELRQSFLSRGLIPIARTTKAILKKFRDLKSNKKPLNDMIENLKKEKAKLEKEKENLKKENXXXXXXXXXXXXXXXXXXXXXXXXXXNLKKENADLEKEKDDTIENLKKEKAVLEKQKEEDKVHIQNLMEEKERNTEEKLSNTKLDVGEEKIKAILEDVYLSLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Z6</accession>
    <name>A0A392M8Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004439</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005480">
        <property type="protein sequence ID" value="MCH83613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4945" checksum="20C846914408B47E" modified="2018-12-05" version="1">MIDKMTSLSRKADFLDHWAKRRVLGPPVGWAEFDRQMVAILAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9G5</accession>
    <name>A0A392M9G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004258</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005192">
        <property type="protein sequence ID" value="MCH83438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9G5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="19994" checksum="0BAA5A642C0F4B81" modified="2018-12-05" version="1">MSQEAVEELRKGQELLKEEVNHLKTQMSLIIQIMLKREDNLSSCLPQACPAPQTPRQWLILPHQRQPRQQAPQHETSSVNMVLSQFQGVSLDNKKAEENKASISSLKDAQKVVQSGLSTGWGQVVTLLKNNHRKGLGFSPSSAKAVEPNVVIKTIKETFHSAGFIHPSSSEAKTPFPRIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAC4</accession>
    <name>A0A392MAC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003980</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004748">
        <property type="protein sequence ID" value="MCH83164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16617" checksum="B9EF66A29F94AF83" modified="2018-12-05" version="1">MEEYTWVTVVGAHWEKIEAEYNVEWLKLAYLDGPGYTAWDRIEAKSKLHRKFFSRSSSHGVVNSPTETLTQPVESHFTSPMAEYAREIRESCAKILELLQEEIDATESESTNDALPTSDETFTSMEPIDASNSLTVALPVLKDFLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAH7</accession>
    <name>A0A392MAH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0004634</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005787">
        <property type="protein sequence ID" value="MCH83808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF568">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="37"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="181"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="293" mass="33769" checksum="43D5455B96CC3534" modified="2018-12-05" version="1" fragment="single">QQEIEKAGLDHVKSKYLSKLLEEDIRSSECNFSFDPRLKETKVLLVFDDVKDSDQLKDLIGTHSNFGQGSRIIVTSRDKQVLVNANADEIYEVRGMDHQDSLELFCLFAFKQNHPIESYVSLVEKFLDYAKGLPLALKVLGSLLYGKTKEVWDSQLQKLKKLPDLKIFRLLKLSYDGLDDEQKDIFLDIACFYRGELENAVAQILDYCGFSARVGMDVLKDRCLISILEGKIWMHDLIQEMGHETVRLQCVNDPGKRSRLWKSNDIYDVLRKRNRCNPVYVPKHKGNKESSTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAZ2</accession>
    <name>A0A392MAZ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">protein-serine/threonine phosphatase</fullName>
            <ecNumber evidence="4">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0005512</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20629"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 16">
            <text>O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:47004"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="EC" id="3.1.3.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the PP2C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010007201">
        <property type="protein sequence ID" value="MCH84677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.40.10:FF:000010">
        <property type="entry name" value="Probable protein phosphatase 2C 39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000222">
        <property type="entry name" value="PP2C_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01032">
        <property type="entry name" value="PPM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="13">
        <location>
            <begin position="20"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH84677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="268" mass="29122" checksum="B51E37D75685B1E4" modified="2018-12-05" version="1">MGPSDPDSGKGKSKMSKHVTHGFHLVKGRSNHAMEDYVVAEFKHVDDNELGLFAIFDGHAGHSVPDYLRSHLFDSILKEPDFWTEPAESVKRAYSETDSTILEKSGDLGRGGSTAVTAILINCQKLVVANIGDSRAVLSENGVAIPLSVDHEPTTESDDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKIHMTSEPHVTVKVIDDGGEFVILASDGLWKVMSNQEAVDAIRDIKDARAAAKRLTEEALNRKSSDDISCIVVRFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBR3</accession>
    <name>A0A392MBR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005069</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006493">
        <property type="protein sequence ID" value="MCH84238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34057">
        <property type="entry name" value="ELONGATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34057:SF1">
        <property type="entry name" value="ELONGATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="305"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="39229" checksum="D88FCC156FE28137" modified="2018-12-05" version="1">MWRLKWTELRLKQLESQELKYSRELEEYDRGKHTAPDHFNLGESGSKSMPFSSHQYTSKAKTRRKRKRIEDTTDVASYTAHHHLFSYFENKKSDVDGSLDDDFDNPVITEPHANSTEKSVDQPSLKCTAADVSYELLLWNIDNLHCRVRTLKNGINAITSRNPSNFSLIPSYGLSPANSEGDGYTASIGGICNSSQHVADEFEFGDFVFPDSAVSSFGEATDIPDIIESTVGLLAAADVTSQSALVPDSGEHMVDNVLMHELQEVKKEVEAHYPIEKLREVKREAEEGSHSVFIPMLDTNIAPTTSASQEQSALKACVNKDISFPKNKRKRGERKAGSGAWNKKSSGEPDNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME36</accession>
    <name>A0A392ME36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase FKBP16-2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006986">
        <property type="protein sequence ID" value="MCH84544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044183">
        <property type="entry name" value="PNSL4/FKBP13-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47833">
        <property type="entry name" value="PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47833:SF1">
        <property type="entry name" value="PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="11861" checksum="C4EC448CAFF66215" modified="2018-12-05" version="1" fragment="single">MALSFSLSSSVTVSNRFPSCCISKLNSKSCNGFNKVLCSSRKDKNPLIGIGLGFVTAMVMGLTALDADATRIEYYATVAEPMCELNYAKSGLGYCDAVEGFGDEAPLGELII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEV0</accession>
    <name>A0A392MEV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006662</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009178">
        <property type="protein sequence ID" value="MCH85811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6489" checksum="139E56159F8765D7" modified="2018-12-05" version="1" fragment="single">VKKGHMLPKARDGEDFMERGKTLADTNLGSSDTKEHLYEMSETGQKWLVATIVGWHGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHI0</accession>
    <name>A0A392MHI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ubiquitin carboxyl-terminal hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007824</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011271">
        <property type="protein sequence ID" value="MCH86960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00121">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050804">
        <property type="entry name" value="MCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236:SF36">
        <property type="entry name" value="MATH (MEPRIN AND TRAF-C-LIKE) DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236">
        <property type="entry name" value="TRAF-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22486">
        <property type="entry name" value="MATH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MATH" evidence="3">
        <location>
            <begin position="11"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="240"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="290" mass="33146" checksum="3FAB544820EE713E" modified="2018-12-05" version="1">MKHGQSSVDKFEKFIWKIENYSCLKLNTNEVCSEPFVLGGYPWRILLHNNYNYLAIYLEAVQMETSKSCMSIEWSRDNISSMRVRNPSMGCQYIMTLAELSDPIKGFIVKDVLIVGAEVFVCKSTHDEPVIQAANLYSSTKFGSQNGHMEVEVPRPNPEVEGPKKDSTKDVDAELVSAALGRVLYFLKTRKMKDMNEQACNDLQVLWDELKKFQFDLTWLEPHVQSALEMKSFVEKSLHVEKLKEDMVVLKEKLADAEVNLDAERDLLKSKGFKEIGLDSELGCGSWRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI68</accession>
    <name>A0A392MI68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein CLP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0008072</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011742">
        <property type="protein sequence ID" value="MCH87206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051731">
        <property type="term" value="F:polynucleotide 5'-hydroxyl-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045116">
        <property type="entry name" value="Clp1/Grc3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032319">
        <property type="entry name" value="CLP1_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755">
        <property type="entry name" value="CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755:SF6">
        <property type="entry name" value="POLYRIBONUCLEOTIDE 5'-HYDROXYL-KINASE CLP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16575">
        <property type="entry name" value="CLP1_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="128"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Clp1 P-loop" evidence="4">
        <location>
            <begin position="8"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH87206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="230" mass="25042" checksum="325CEAC56466DC22" modified="2018-12-05" version="1" fragment="single">GPRVIVVGPSDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITAPGCIAATPIEMPIDPVEGIPLEMPLVYFFGHTTPSNNVELYKVLVKELAGMLERQFAGNAESRAAGMVLNTMGWIEGVGYDILIIVVVSLLSLTLSFGGILLQLLLHAIRTFKANVVLVLGQEKLCSMLRDVLKGEPKVDVVKLQRLQFTYIANPDLAKQLTEKRMIFLSEVGRIKDGSMLSNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIG0</accession>
    <name>A0A392MIG0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">mannan endo-1,4-beta-mannosidase</fullName>
            <ecNumber evidence="3">3.2.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0007709</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Random hydrolysis of (1-&gt;4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.</text>
            <dbReference type="EC" id="3.2.1.78"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 5 (cellulase A) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.78" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010011050">
        <property type="protein sequence ID" value="MCH86849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016985">
        <property type="term" value="F:mannan endo-1,4-beta-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001547">
        <property type="entry name" value="Glyco_hydro_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045053">
        <property type="entry name" value="MAN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31451">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31451:SF64">
        <property type="entry name" value="MANNAN ENDO-1,4-BETA-MANNOSIDASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26410">
        <property type="entry name" value="GH5_mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 5" evidence="6">
        <location>
            <begin position="2"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF26410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH86849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14469" checksum="5593E9CF3BCE8959" modified="2018-12-05" version="1" fragment="single">DFFRNPVVKGFYINHVKTVLNRYNSFTGIHYKDDSTIMAWELMNEPRCTSDPSGRTIQAWITEMASLVKSIDRNHLLEAGLEGFYGQSTPQRTQLNPALNIGTDFIANNRIPDIDFATVHCYPDQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MII2</accession>
    <name>A0A392MII2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Exportin-T</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 9">Exportin(tRNA)</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8 9">tRNA exportin</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0008017</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Nucleus</location>
        </subcellularLocation>
        <text evidence="9">Shuttles between the nucleus and the cytoplasm.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the exportin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011630">
        <property type="protein sequence ID" value="MCH87151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016363">
        <property type="term" value="C:nuclear matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071528">
        <property type="term" value="P:tRNA re-export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013598">
        <property type="entry name" value="Exportin-1/Importin-b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040017">
        <property type="entry name" value="XPOT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15952:SF11">
        <property type="entry name" value="EXPORTIN-T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15952">
        <property type="entry name" value="EXPORTIN-T/LOS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08389">
        <property type="entry name" value="Xpo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="9" id="KW-0813">Transport</keyword>
    <keyword evidence="4 9" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Exportin-1/Importin-beta-like" evidence="10">
        <location>
            <begin position="81"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH87151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="27836" checksum="D86D67A4D94FA5A0" modified="2018-12-05" version="1">MDDLERGILIMFDEWGAVDDELKKQAKSYCSNIKEKPSTLHEVIRTRYSTISPEEKHMIRGTVFSIVCLEDKNPIRVLEGPPFIKNKLAQVFIALIYFEYPLIWSSVFVDFLPHLRKGNVVIDMFCRVLNALDDELISLDYPXXXXXLTVAGRVKDAMREQCVSQIVRAWYDIISMYRNSNQDLCTIVLDSMRRYISWIDIGLIFNDTFLPLLFDLILVGAPSDQLRGAAVGHRGWQCRTGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKC2</accession>
    <name>A0A392MKC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008833</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013218">
        <property type="protein sequence ID" value="MCH87952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000285">
        <property type="term" value="F:1-phosphatidylinositol-3-phosphate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45748">
        <property type="entry name" value="1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45748:SF21">
        <property type="entry name" value="1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="402" mass="44801" checksum="71FD4D7B0EF83133" modified="2018-12-05" version="1" fragment="single">ILLKGSNGDELKKVKHVVQYGVFAAYHLALETSFLADEGASPLELPLKSPITVALPDKPSSIVKSISTIPGFSVVTGRGHQGAETNKEVPKCNDGFKTHRTSSSCSESMERSLAGESIHMHEISGDVTQLAQDMSSSHCNSFLTNTAFEKDGKERPKESLHYRQDEGTKTMIRADLISDFFGTFEPSGRDGNNHIKAVAGAGPESPIVRHDDDNNNNNFDNDMIHSKEDFPPSTSDHQSILVFLSTRCVWKGTVCERSHLVRIKYYGSSDKPLGRFLRDQLFDQSYTCRSCEMPPEAHVHCYTHRQGSLTISVKKLSEFPLPGEREGKIWMWHRCLKCPRVNGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGYAFLFIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKR6</accession>
    <name>A0A392MKR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-glucosidase 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008983</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013497">
        <property type="protein sequence ID" value="MCH88102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353:SF273">
        <property type="entry name" value="GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="GLYCOSYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="21058" checksum="E3F6106377175A82" modified="2018-12-05" version="1" fragment="single">RIKDGKSGDIAIDSYHRYKEDVALMKDMNLDAYRFSISWSRILPNGKLSGGINQEGIDYYNNLIDELAANGLQPFVTLFHWDLPQSLEDEYGGFLSPLIIKDFQDYAELCFKTFGDRVKHWITLNEPWTFSRDGYTNGDMAPGRCSSWLNPKCIGGDSGIEPYLVAHYQLLAHAAAVNVYKTKYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML12</accession>
    <name>A0A392ML12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIR-NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012685">
        <property type="protein sequence ID" value="MCH87669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF290">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="69"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="316" mass="36174" checksum="5ECDEEBE43EEB509" modified="2018-12-05" version="1" fragment="single">ETFKDDLHKVDGWKRAMTCFAGLAGCDVRDKLEVGVIETIVQDVIKKLDHKFPGLSNDLIGLQPRVEALERLLNPKSEDDAYRVLGIWGMDGIGKTTLANVLYDKLSYQFDAGCFIENVSTIYRDGGAIAVKKQILHQTLKEKDLETYSTYRLNNIKFLIVLDDIDQFELLEKLDINPKLLHPGSRIIITTRDRHILELYGVIQIHEVELMNGNDSWELLCRKAFKNDNSSGHAELIPKVLEYTQGLPLAIRVMGSFLYQRPTTQWRATLERLKNNPNSGIMKVLQSSFEGLDDIEKEIFLHVACFFQGEREDYVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML49</accession>
    <name>A0A392ML49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BHLH transcription factor-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013743">
        <property type="protein sequence ID" value="MCH88220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="333" mass="37118" checksum="60EB829B7ECF2CF6" modified="2018-12-05" version="1" fragment="single">MIGDSENDVFPLDFTNDDLDGLLASISSENSCDWNLKYAHDENHNDLRGVFSSCEERITSPEFDSSSLSDQLKCTIEAFLEPNSSMDNLVSQNTPFFDENLCFDSLEQLFASDTMAQEVCTSFPSSIVHDSSLTSLQNSMDNVVTEVDQSASSGTVNGISSRLEPIDMSEEILKFSSMDDLWQWFAPSPEATGSCRTMIQLNNNVSEPIEFNPTCSDLGLAEKETXVVIHSSENDFLDNMEFDLGCDQSSEWWVNLLTPVVSAATDNTGFSECISELNTCIPTDNTRKRLFSELGIEELLRDETNYINPFNSASFENELSSSNKKHMVEFSPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMN1</accession>
    <name>A0A392MMN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">UPF0496 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0009649</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0496 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014773">
        <property type="protein sequence ID" value="MCH88757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007749">
        <property type="entry name" value="DUF677"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31113:SF6">
        <property type="entry name" value="UPF0496 PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31113">
        <property type="entry name" value="UPF0496 PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH88757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20962" checksum="6E0DDB4FCFB6CFD5" modified="2018-12-05" version="1">MIATHLIELSLGQCSELQKQLELRRDSLRAKLQMVTMLKHCSTCAIVVVTTSLVVLVVSHGFALLVAMPGLTLMNLHSKRKLTNMTAQLDAAAKGTYILNKDLETTSRLVARLNDEMEHIRTMVKFWLERKEDKIQADGEVLRLLXXXXXXXXXQLDELEEHLYLCFMTINRARDLVLNQITASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN94</accession>
    <name>A0A392MN94_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">O-fucosyltransferase family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0008632</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycosyltransferase GT106 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012840">
        <property type="protein sequence ID" value="MCH87754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019378">
        <property type="entry name" value="GDP-Fuc_O-FucTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741:SF4">
        <property type="entry name" value="O-FUCOSYLTRANSFERASE 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741">
        <property type="entry name" value="OS02G0726500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10250">
        <property type="entry name" value="O-FucT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="11" id="KW-0294">Fucose metabolism</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4 14" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH87754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16725" checksum="43D5CB90F533BB03" modified="2018-12-05" version="1" fragment="single">MSPREAAIFLKAMGYPSTTTIYIVAGPIYGGNSMAAFRAEYPNVFTHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRSNFVRLIDNLDEGSISWEAFSSEVKNLHSNRLGAPYLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNJ2</accession>
    <name>A0A392MNJ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GAG-pre-integrase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009999</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015477">
        <property type="protein sequence ID" value="MCH89106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAG-pre-integrase" evidence="2">
        <location>
            <begin position="164"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="72"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="256" mass="28358" checksum="24212BB675849FBA" modified="2018-12-05" version="1" fragment="single">GMPHCPYPTSQWTHPISPSRQPDILRQHPQAHTATASPAPTGIATAMHTMSLLPIDSTWYMDTGASSHTAASQSGQGIPIQGSGHTTLPTSYKQKHLNLNHVLHTPQIIKNLISMRQLTTDNNVSVSFDPFGFSVFDFQTGIPLMRCDSLGDLYPVTSPSHFVDLASNLWHNRLGHPSSSTLQSLHRNKFIXLWTSPILSSSGQRYYVLFLDDYSDFVSPVSSLLSKVTYALLNFNPNTAYRYIPKQNNPCNLLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP07</accession>
    <name>A0A392MP07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015756">
        <property type="protein sequence ID" value="MCH89240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35757">
        <property type="entry name" value="THERMOSOME SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35757:SF1">
        <property type="entry name" value="THERMOSOME SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6280" checksum="0DF1D6FE66230F5C" modified="2018-12-05" version="1">MAKASGWPLNRYQTLALLIFSLFLALDLWFWELLFGSTVNWVSDVASEVLLYVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ01</accession>
    <name>A0A392MQ01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Trihelix transcription factor GTL1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0010357</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016192">
        <property type="protein sequence ID" value="MCH89461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000104">
        <property type="entry name" value="trihelix transcription factor ASIL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044823">
        <property type="entry name" value="ASIL1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044822">
        <property type="entry name" value="Myb_DNA-bind_4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31307">
        <property type="entry name" value="TRIHELIX TRANSCRIPTION FACTOR ASIL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31307:SF4">
        <property type="entry name" value="TRIHELIX TRANSCRIPTION FACTOR ASIL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13837">
        <property type="entry name" value="Myb_DNA-bind_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Myb/SANT-like DNA-binding" evidence="8">
        <location>
            <begin position="66"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="9"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH89461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="37175" checksum="3CC8C899B16110E3" modified="2018-12-05" version="1" fragment="single">MDDDDEIHSNPSPLSGSPVSSPGAIGRISVTVAAPAPESHPATNSYALALPIQNQVRGNNGGGREDCWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVNGREDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVTTSKWPFYDRLDQLIGPTAKITGSTSAGNSNLPPHKVPLGIPVGLRAGGVANQFNSQKKNTKPQPQLQPQLNYQKVQLRPRVLAVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMNSNAAKGTEGRKKGWGSAVRELTHAIVKFGEVYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQVEISQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS47</accession>
    <name>A0A392MS47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018095">
        <property type="protein sequence ID" value="MCH90337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35505">
        <property type="entry name" value="OS01G0600300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35505:SF5">
        <property type="entry name" value="SUBSTRATE CARRIER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11175" checksum="1ECDEEA312B95511" modified="2018-12-05" version="1" fragment="single">CWYLVTDDGLFYVDNAGDEENASEEDRENKLISDAFVAAAQTMKSSDNESRKRKAKSSGKKIKFAKYELNQTAVPVKAGTSARNDSSSDESEVQDPNSDSDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS90</accession>
    <name>A0A392MS90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription factor ILR3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010414</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016316">
        <property type="protein sequence ID" value="MCH89518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:intracellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044818">
        <property type="entry name" value="ILR3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46133">
        <property type="entry name" value="BHLH TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46133:SF1">
        <property type="entry name" value="TRANSCRIPTION FACTOR ILR3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017212265" evidence="2">
        <location>
            <begin position="17"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17019" checksum="7B6D3A7617CF30DD" modified="2018-12-05" version="1">MTSKFFICTIVPLFIALYLPGRPPKTDKAAILIDAARMVTQLRGEAEKLRNSNSNLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQMKSMNAQPSFLTHPPAIPAAFAPQGQVPGNKLMPFMSYPGVAMWQFMPPASVDTSXXXXXXXPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSB1</accession>
    <name>A0A392MSB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011325</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018240">
        <property type="protein sequence ID" value="MCH90410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050823">
        <property type="entry name" value="Plant_Ser_Thr_Prot_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45621">
        <property type="entry name" value="OS01G0588500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22708" checksum="0BAA7D33E5068023" modified="2018-12-05" version="1">MKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGGSARNGPQQRSLSISHGTHASPFRHRYPQHSPKPTGKAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSE8</accession>
    <name>A0A392MSE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CEN-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011366</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018322">
        <property type="protein sequence ID" value="MCH90450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009908">
        <property type="term" value="P:flower development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010228">
        <property type="term" value="P:vegetative to reproductive phase transition of meristem"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.280.10">
        <property type="entry name" value="PEBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036610">
        <property type="entry name" value="PEBP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035810">
        <property type="entry name" value="PEBP_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11362">
        <property type="entry name" value="PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11362:SF108">
        <property type="entry name" value="PROTEIN BROTHER OF FT AND TFL 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49777">
        <property type="entry name" value="PEBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8406" checksum="A048979CB67F6265" modified="2018-12-05" version="1" fragment="single">KEIVEYENPKPVIGIHRYVFILFKQRGRQTVRAPNSRDNFNTRRFSQENNLGLPVAAVYFNAQRETAARRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTM6</accession>
    <name>A0A392MTM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010914</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017402">
        <property type="protein sequence ID" value="MCH90008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31439">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31439:SF4">
        <property type="entry name" value="NEURONAL PAS DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13680" checksum="5D94FBD250267A01" modified="2018-12-05" version="1" fragment="single">MLMKLLGSNLEEKWMRSVNLAITNWIVELQEVGSHHYSKFRTPSPLFSYAFSAYGLWKVQLYCPLITMDVVGANNHAADERLQFSLKYQQLEGVLQFNHKVFVKEKWVEIMVNIDNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUD4</accession>
    <name>A0A392MUD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019275">
        <property type="protein sequence ID" value="MCH90892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8767" checksum="32F55EC98D42B14C" modified="2018-12-05" version="1">MAKRNAKRGGAKGETRKMGITQRGVSRRSKRGXGPRNRVSHTLEGQNEEKAPDIEFLQTHPNFARTRRGEAAILSPTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUN1</accession>
    <name>A0A392MUN1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0012133</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010019921">
        <property type="protein sequence ID" value="MCH91207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000032">
        <property type="entry name" value="Serine/threonine-protein kinase D6PK-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45637">
        <property type="entry name" value="FLIPPASE KINASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="320"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="58"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="261"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="264"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH91207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="430" mass="46752" checksum="69EDB683DFAB025B" modified="2018-12-05" version="1" fragment="single">QRLTGKDVSCMRAVSARELNQFSKAQDGPMTRLASIREVAQLSNARIVLVTEDMGFDTRSSQERGKASLPEPDIETLKSSSDSFGEIDPSSFSGATHPPEPIDTDLMRTVFVPIGQNKSEAGCLTKNMSLKGPFLEDLSIRSLTKKPTLAVVSPSESTVEESNGDTGNLVAPFSGACASQNTENSLPSLDSEEKECVWDSSLPPSENVSPLSSIDSSSVVRTMSIANSCASTYRSDAFTSDGMISIDKNCDSIKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAVRARDGILGMSHFKLLRRLGCGDIGSVYLSELSATRCYFAMKVMDKASLAARKKLIRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARYVCTLQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVB6</accession>
    <name>A0A392MVB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cation/H(+) antiporter 15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0011832</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. CHX (TC 2.A.37.4) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019322">
        <property type="protein sequence ID" value="MCH90909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902600">
        <property type="term" value="P:proton transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050794">
        <property type="entry name" value="CPA2_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468">
        <property type="entry name" value="CATION/H + ANTIPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468:SF166">
        <property type="entry name" value="CATION_H+ EXCHANGER 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0630">Potassium</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="119"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Cation/H+ exchanger transmembrane" evidence="11">
        <location>
            <begin position="56"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00038341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH90909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="289" mass="31800" checksum="352D1AE072882B40" modified="2018-12-05" version="1" fragment="single">FPVLARILAKLKLLYTKLGKDALTAAMLTDAYGWVLFTLLIPYSNIGGKPLLSVINCLGTHPIVGAFVFGLILPHGKFAVMVMEMSDDFVSGILCPVFFAGFGFRLNMPFLLKQDSAGLMMLIAVLLCIPKVLSSLIVTFFFGMPARDGLAIGLLLNTKGVMAIILLNVAWDKKILDPYCFMVMMLAIILMTVIVSPLISAIYQPKFRFMQSQLKTMQKLRFDMELRVVACVHNTKHANSMIHVLEATNATRVSPIHVSVAHLVELTRHGTAILVSQMDHSDSTVGTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW22</accession>
    <name>A0A392MW22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein SCAR2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012676</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SCAR/WAVE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021098">
        <property type="protein sequence ID" value="MCH91746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071933">
        <property type="term" value="F:Arp2/3 complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034237">
        <property type="term" value="F:protein kinase A regulatory subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030036">
        <property type="term" value="P:actin cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000601">
        <property type="term" value="P:positive regulation of Arp2/3 complex-mediated actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.280.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028288">
        <property type="entry name" value="SCAR/WAVE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12902">
        <property type="entry name" value="WASP-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12902:SF1">
        <property type="entry name" value="WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="71"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="21630" checksum="77044F6FF38AD311" modified="2018-12-05" version="1" fragment="single">SAVSEHDSISPQEKPTQPPSQLPAETSSEVKTPNHSVSNAEGAQGQLGISLMLPPNMESVDPNQSFRLFEGEMSSLDPSAQTSDFESERTNVKPKHKIPRPRNPLIDAVAAHDKSKLRRATERVMPQIGPKVDERDSWLEQIRTKSFNLKPAVATRPRIQGPKTNMKLAAILEKANSIRQALAGSDEDDDADSWSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWI3</accession>
    <name>A0A392MWI3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0012831</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021404">
        <property type="protein sequence ID" value="MCH91900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="22"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="106"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="106"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="365" mass="40701" checksum="B2C2BB9224A9A107" modified="2018-12-05" version="1">MGWGKDQCKLGDGGKVGSARYVTFYFTNFSPLLSNFFLRKAFEVCGMLEDVYVAKKTNRYGEPYGFVRFSKVKNVTKMTKALNAVWFGHYRVRASVATFDRHYSGEDKRPKKEKVGASKGADETLKKVGSKDPLKPVLPEGGVASTFLKGSKTHGGDVTAPDEEGSGYPEGVRVGDIVVKLGDCKERRIRKEFQQTGEGLKHSEAEQPNVTAQERELINGEAIPMVQNRISNAGFGNLILVPMRADKVFVRSVEGADVLPIMKGAKEFFNLVFSNWVRWGEDVMPYRRGAWVRLYGIPLXXXXXXXXXXXXXXXXXXLRADSCSADRDRLDFARVLIATTDLDIIKRVEIVLVDGTLVEVQIVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWP4</accession>
    <name>A0A392MWP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Boron transporter 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0012352</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the anion exchanger (TC 2.A.31.3) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020409">
        <property type="protein sequence ID" value="MCH91425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005452">
        <property type="term" value="F:solute:inorganic anion antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006820">
        <property type="term" value="P:monoatomic anion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050801">
        <property type="term" value="P:monoatomic ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011531">
        <property type="entry name" value="HCO3_transpt-like_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003020">
        <property type="entry name" value="HCO3_transpt_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11453">
        <property type="entry name" value="ANION EXCHANGE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11453:SF40">
        <property type="entry name" value="BORON TRANSPORTER 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00955">
        <property type="entry name" value="HCO3_cotransp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Bicarbonate transporter-like transmembrane" evidence="7">
        <location>
            <begin position="3"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH91425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23129" checksum="CDA1D7E6848024A1" modified="2018-12-05" version="1" fragment="single">MVVVWTVFSFAVVTSKVPSGVPRRLIAPVAWESTSLHHWTVIKDMGKVSPTHIFEAFIPAIMIAGLYFFDHSVASQLAQQKEFNLKKPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKKQLIRRKMVKSAKESIRLKASNSEIYGKMQEVFIEMDHNPNNNSVVKELEDLKDVVLNGEDKGDNNKNTFDPEKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY51</accession>
    <name>A0A392MY51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DEAD-box ATP-dependent RNA helicase 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021324">
        <property type="protein sequence ID" value="MCH91859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47958">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12429" checksum="035D3E19882B7782" modified="2018-12-05" version="1">MVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGYYATIVAIWVGKRCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ63</accession>
    <name>A0A392MZ63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein TIC 62 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023064">
        <property type="protein sequence ID" value="MCH92613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47711">
        <property type="entry name" value="PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 16, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47711:SF2">
        <property type="entry name" value="PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 16, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16029" checksum="A55A33672D9E5588" modified="2018-12-05" version="1" fragment="single">MVPTLSSNSSLFPTTPHLKLNFRNQTRFNVYAKKSSAGSFPSFGLGKPKDEEKDQSNGSSSNSNNPFGFDFGKLPDVTSLIPVGSKNNSLPGLSFGSPRRKDSSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELGSAQELAQLASQYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZB9</accession>
    <name>A0A392MZB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0013842</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023727">
        <property type="protein sequence ID" value="MCH92896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050823">
        <property type="entry name" value="Plant_Ser_Thr_Prot_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45621">
        <property type="entry name" value="OS01G0588500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="159"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="184"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="22986" checksum="FB209A5D675E2E15" modified="2018-12-05" version="1" fragment="single">AAANLSVETLEKGLLTPKSNVWSFGIVLLELFTGRKNFDRQFPKKERNLVKWCRPYLADDFQLSVIIDCQLKGQFSLKAARTLASIVQRCLQREPSERPTMRAILENLKTILDMEYPSLFPLQEPASIYGRHMSRSPTVGGIINAPRLGFSPSLLPSATKTSISHPRRWSGVPTKLPSPLACSSAVSTEELTRQESTQPSSSVTNKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0G7</accession>
    <name>A0A392N0G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Putative inactive leucine-rich repeat receptor-like protein kinase IMK2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0013387</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022710">
        <property type="protein sequence ID" value="MCH92448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000388">
        <property type="entry name" value="Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052451">
        <property type="entry name" value="Ser/Thr_kinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48008">
        <property type="entry name" value="LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48008:SF2">
        <property type="entry name" value="PROBABLY INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH92448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="203" mass="22247" checksum="CB3FC16EA157DEFA" modified="2018-12-05" version="1" fragment="single">RGPEIIVEWPTRMKIAIGITNGLCCLHNQENIVHGNLTSSNILLDEQTNPHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLGVILLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPSARPEVKQVLQQLEEIKPELVEAEVDDDGAKVQTNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0M5</accession>
    <name>A0A392N0M5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tryptophan synthase beta chain 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0014286</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024700">
        <property type="protein sequence ID" value="MCH93337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0M5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF3">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH93337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="15691" checksum="6037A9E3810DBCB3" modified="2018-12-05" version="1" fragment="single">VRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACVGGGSNAMGLFHEFVDDSDVRLIGVEAAGFGLDSGKHAATLTKGEIGVLHGAMSYLLQDDDGQIVEPHSISAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1U9</accession>
    <name>A0A392N1U9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Myb transcription factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0014515</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025241">
        <property type="protein sequence ID" value="MCH93563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1U9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH myb-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="Myb-like" evidence="3">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH93563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3823" checksum="C97C608686DF51BC" modified="2018-12-05" version="1" fragment="single">MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3H5</accession>
    <name>A0A392N3H5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0014702</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010025700">
        <property type="protein sequence ID" value="MCH93749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3H5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051348">
        <property type="entry name" value="U-box_ubiquitin_ligases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647:SF132">
        <property type="entry name" value="KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647">
        <property type="entry name" value="OS02G0152300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="UspA" evidence="4">
        <location>
            <begin position="17"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH93749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15038" checksum="8DFDF4F9FF898F36" modified="2018-12-05" version="1" fragment="single">MWLPKNSEKKDGVNGLIAVAIDKEKGSQNALKWAVDNLLSRSATVILIHVKISAPSLSLSPSIFALKAAGIISNGHDSSHPEAQKNIFLPYRVFCTRKDIQCKDVLLEDTDVSRALIDYASQAGIEHLILGSSAKTSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3K3</accession>
    <name>A0A392N3K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Glutamate receptor 3.4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0015360</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027245">
        <property type="protein sequence ID" value="MCH94400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015276">
        <property type="term" value="F:ligand-gated monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.70:FF:000037">
        <property type="entry name" value="Glutamate receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.190.10:FF:000109">
        <property type="entry name" value="Glutamate receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015683">
        <property type="entry name" value="Ionotropic_Glu_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001320">
        <property type="entry name" value="Iontro_rcpt_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18966">
        <property type="entry name" value="IONOTROPIC GLUTAMATE RECEPTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00060">
        <property type="entry name" value="Lig_chan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00079">
        <property type="entry name" value="PBPe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="11" id="KW-1071">Ligand-gated ion channel</keyword>
    <keyword evidence="8 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 15" id="KW-0675">Receptor</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="120"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Ionotropic glutamate receptor C-terminal" evidence="14">
        <location>
            <begin position="1"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH94400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="27846" checksum="B10F6CC52A48EDAD" modified="2018-12-05" version="1" fragment="single">MESIRHNFDAAVGDVTIVPNRTRLLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIHPSRIVSLKDPKAYVDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGQEFTKSGWGFVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3K6</accession>
    <name>A0A392N3K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter B family member 20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015108</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026639">
        <property type="protein sequence ID" value="MCH94152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221:SF477">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY MEMBER 20-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="13"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="18660" checksum="C40B066BA42B9716" modified="2018-12-05" version="1">MKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSVESESSRVIQEALDTLIMGNKTTVLIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFDEPLTTSAPEGFFQEYLVEIMIGLELALDIDRGIGEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3R5</accession>
    <name>A0A392N3R5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helicase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015421</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027387">
        <property type="protein sequence ID" value="MCH94460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786">
        <property type="entry name" value="DNA BINDING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786:SF66">
        <property type="entry name" value="HOOK MOTIF PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="1">
        <location>
            <begin position="127"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="365" mass="42277" checksum="1DCA74DC03134474" modified="2018-12-05" version="1" fragment="single">LEGCENPYVTTYRRIRDAISTQHCNNIKLRILGKRGRDGRRYNLPSASEVAALVVGDYDAADFERDVIIETQSGLLKRISTFELAYWPLQYPLLFPRGEDGYRRDIPFKDNSNASTRKRQFITXLEWVAYRIXQRDVDQSXIVFSRRLFQQFLVDSFSTIESDRLRYMRDHQKDLRADMYKGLTEAILKGDTDSARAGKRIVLPSSFVGGARYMIQNYQDAMAICAWAGYPDLFITFTCNHKWPELVDFLKIYNLKPEDRPDLVSRLFKIKLTQLIKDIKQGEXFGMVKAVVYTIEFQKRGLPHAHILVFLHPSFRFVNPHDIDRIISAEIPDKTKDPDLFKIVTTLMIHGPCGDDNTDSPCMQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3S3</accession>
    <name>A0A392N3S3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026816">
        <property type="protein sequence ID" value="MCH94223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3S3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5307" checksum="97B9F6B2A9909E2D" modified="2018-12-05" version="1" fragment="single">MKIKELVLAEKLDFLAIQETKLESFSDSLPHCLWGNDDCAWACLPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4T5</accession>
    <name>A0A392N4T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014942</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026218">
        <property type="protein sequence ID" value="MCH93988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="13096" checksum="C963F73CD986556F" modified="2018-12-05" version="1">MPMQPKMANRVSALETQMGEMQTTQEQMQATLQTMAQQIQQQSHVLTELSKQLGRKHTIPEREDPMAWITRAEIYFDVQGTVDEMRVKLARLSMEGATIHWFNLLMETEDDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N872</accession>
    <name>A0A392N872_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015648</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027916">
        <property type="protein sequence ID" value="MCH94684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N872"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2812" checksum="90E841C3C419634F" modified="2018-12-05" version="1" fragment="single">MTPSNGGTSKYAICTGMASLQILPRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA28</accession>
    <name>A0A392NA28_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">glucan endo-1,3-beta-D-glucosidase</fullName>
            <ecNumber evidence="3">3.2.1.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">(1-&gt;3)-beta-glucan endohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Beta-1,3-endoglucanase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0017658</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of (1-&gt;3)-beta-D-glucosidic linkages in (1-&gt;3)-beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glycosyl hydrolase 17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.39" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010032929">
        <property type="protein sequence ID" value="MCH96670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042973">
        <property type="term" value="F:glucan endo-1,3-beta-D-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000490">
        <property type="entry name" value="Glyco_hydro_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044965">
        <property type="entry name" value="Glyco_hydro_17_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32227">
        <property type="entry name" value="GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00332">
        <property type="entry name" value="Glyco_hydro_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="9">
        <location>
            <begin position="86"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH96670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="10887" checksum="A55BA0B66F708141" modified="2018-12-05" version="1" fragment="single">GWPYKGDNDEAGPSIENAKAYNGNLIKHLRSKVGTPLMPGKSVDTYIFALYDEDLKPGAGSEKAFGLYNPDQSMIYDAGLSKQQSTTPTPTXXXXXXXAPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAV6</accession>
    <name>A0A392NAV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030196">
        <property type="protein sequence ID" value="MCH95594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16331" checksum="78FFB5F619D0E2DA" modified="2018-12-05" version="1" fragment="single">SMVILRDLDDEEGNSSKPQPIGSKCRGYYSEMWGFPVSSSDNTDISDSDSSSGTSSDCVIISTSSFTGKQKATSRSLVVLDLAIMMMEVSSKFTTLESVACFRGAVKLSSSKDESGVITEPVAGSEFVTTVNTNEPHYFYMYTSLVQVLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB00</accession>
    <name>A0A392NB00_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Protein FAR1-RELATED SEQUENCE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0018010</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Putative transcription activator involved in regulating light control of development.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the FHY3/FAR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033878">
        <property type="protein sequence ID" value="MCH97017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031052">
        <property type="entry name" value="FHY3/FAR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006564">
        <property type="entry name" value="Znf_PMZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31669:SF291">
        <property type="entry name" value="PROTEIN FAR1-RELATED SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31669">
        <property type="entry name" value="PROTEIN FAR1-RELATED SEQUENCE 10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00575">
        <property type="entry name" value="ZnF_PMZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 5 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="7">
        <location>
            <begin position="147"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU367018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH97017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="31398" checksum="E7121CCD9CBD4CBA" modified="2018-12-05" version="1" fragment="single">MKGKAPQTILTDHNTWLKDAIAVEMPESKHAFCIWHILSKFSNWFSILLGSQYDEWKAEFHRLYNLEMVDDFEEGWRLMVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASFLIDEGCFQVRHHSQTDGGCKVLWLPCQEHISCTCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPIRWRSIGLSSLNHFQGTTSRDQPERIQFLESLVSTLLMESVETDERLDVACDQVSMVLSRIKTLPRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC53</accession>
    <name>A0A392NC53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034491">
        <property type="protein sequence ID" value="MCH97262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="104"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="345" mass="39803" checksum="19B4B24805236387" modified="2018-12-05" version="1" fragment="single">MLRNQEVDWVEEEDQLKNMVNDFYKDLFREDNNAMVWRDTDVSFAIITEEEKDQLKAILSNNEVKEALFSMSAWKAPGPDGFPVGFYQKDWNVIAESVCEFARTMWAYPEKIEDVNFTDICLIPKVNKPEFVNQFHPISLCNVSYKILTKVVVNRLKPIISKVVSPFQTGFVPGRNISENIIIAQEMLHSMAKMRSRIGFFAIKVDLTKAYDRLRWPFIEKVLIEVGIPNEMHQFIMSCIRSVKTNVLWNGSMSSYFNPECGIRQGDPMSPYIFVLCMDKLSHLITEEIDTRHWTPMRAGRNSPHISHLMFADDLLLFGQATEATMASVTRALENFCTMSGQRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND59</accession>
    <name>A0A392ND59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative RNA-binding protein Luc7-like 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Luc7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035852">
        <property type="protein sequence ID" value="MCH97760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005685">
        <property type="term" value="C:U1 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006376">
        <property type="term" value="P:mRNA splice site recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004882">
        <property type="entry name" value="Luc7-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12375">
        <property type="entry name" value="RNA-BINDING PROTEIN LUC7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03194">
        <property type="entry name" value="LUC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="17213" checksum="F2A05B62E5F484B2" modified="2018-12-05" version="1">MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKSKGIDNYERELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSEVTQTPEVLELSKEIKEKLKEADKYDLALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND75</accession>
    <name>A0A392ND75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RecA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0018001</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033858">
        <property type="protein sequence ID" value="MCH97008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013765">
        <property type="entry name" value="DNA_recomb/repair_RecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049428">
        <property type="entry name" value="RecA-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900:SF14">
        <property type="entry name" value="DNA REPAIR AND RECOMBINATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900">
        <property type="entry name" value="RECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00154">
        <property type="entry name" value="RecA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecA-like N-terminal" evidence="5">
        <location>
            <begin position="26"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH97008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8093" checksum="7ED69D0179784BD7" modified="2018-12-05" version="1" fragment="single">MYLGKKRAKSDGSDSGEDNMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEE7</accession>
    <name>A0A392NEE7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Patatin</fullName>
            <ecNumber evidence="5">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0019189</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Lipolytic acyl hydrolase (LAH).</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The nitrogen atoms of the two glycine residues in the GGXR motif define the oxyanion hole, and stabilize the oxyanion that forms during the nucleophilic attack by the catalytic serine during substrate cleavage.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the patatin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010036981">
        <property type="protein sequence ID" value="MCH98190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047372">
        <property type="term" value="F:monoacylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004620">
        <property type="term" value="F:phospholipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1090.10">
        <property type="entry name" value="Cytosolic phospholipase A2 catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32176:SF113">
        <property type="entry name" value="PATATIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32176">
        <property type="entry name" value="XYLOSE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="FabD/lysophospholipase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="3 5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="6">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="4">
        <location>
            <begin position="49"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH98190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9408" checksum="CF343B0EE7DCC860" modified="2018-12-05" version="1" fragment="single">MQLKNSPILDAKLSDICISTSAAPTYLPAHNFTNKDEEAGKEEEFNLIDGGVCANNPALVAVNEVTKQIIDQSPDFFPIKPLEYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF88</accession>
    <name>A0A392NF88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transmembrane emp24 domain-containing protein p24delta3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0019520</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the EMP24/GP25L family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037807">
        <property type="protein sequence ID" value="MCH98517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015720">
        <property type="entry name" value="Emp24-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009038">
        <property type="entry name" value="GOLD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22811">
        <property type="entry name" value="TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01105">
        <property type="entry name" value="EMP24_GP25L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50866">
        <property type="entry name" value="GOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GOLD" evidence="8">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH98517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10710" checksum="4C0BF63F3EA88E55" modified="2018-12-05" version="1" fragment="single">MVTSPYGXELHHNQNVTQGQFAFTTTESGNYVACFSMDGKQQEGSASVSLDWKTGISAKDWDSVAKKEKIEGVELEVRKLEGIVDAIHQYLIYLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG92</accession>
    <name>A0A392NG92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type II inositol 145-trisphosphate 5-phosphatase FRA3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019154</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036861">
        <property type="protein sequence ID" value="MCH98155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004439">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056454">
        <property type="entry name" value="Beta-prop_IP5PC_F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046985">
        <property type="entry name" value="IP5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11200">
        <property type="entry name" value="INOSITOL 5-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11200:SF300">
        <property type="entry name" value="TYPE II INOSITOL 1,4,5-TRISPHOSPHATE 5-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23754">
        <property type="entry name" value="Beta-prop_IP5PC_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IP5PC-F beta-propeller" evidence="1">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="23489" checksum="EA3AA3CCBC76CD60" modified="2018-12-05" version="1" fragment="single">RSRNAIMGAADAVRRVAAKGGFGDDNRRTEALVVTIDGMIWTGYSSGLVVQWDGNGNRIQDFLYHSFAVQCFCTYGMQIWVGYASGIVQVLDLKGNLIGGWVAHSCPIVKLTVGVGYVFALGNHGGIRGWNITSPGPLDSILHSELGGKEFLYTKIENIKILSGTWNVGQGKASQDSLTSWLGSVASDVGLVVVGLQEVEMGAGFLAMSAAKETVSYCFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH88</accession>
    <name>A0A392NH88_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038681">
        <property type="protein sequence ID" value="MCH98851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="62" mass="7041" checksum="86CF01181934FBD5" modified="2018-12-05" version="1" fragment="single">DSIGDNQFSGTLPDFIQNWTGLERLCEASHGCCFNQAEKLFDEMLQRGMKPTLFKLITEEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJC8</accession>
    <name>A0A392NJC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phagocyte signaling-impaired protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021021</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041958">
        <property type="protein sequence ID" value="MCI00007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10161" checksum="B84775A488FD54AB" modified="2018-12-05" version="1" fragment="single">IIEFVQFKDRLQRSSQYLMARVETPILQLKQNADNVEDEEGILQNMKCGSHFLELSNEIGSKSLTFNEDLESRPWWTPTVEKNYLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NN11</accession>
    <name>A0A392NN11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021528</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043434">
        <property type="protein sequence ID" value="MCI00509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="101"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="39273" checksum="77AD38E0BE75C206" modified="2018-12-05" version="1" fragment="single">ELDKEAETIIKEGITRFGETPNPVTVAEHLFEDKQVSDLTFLDKHLSPNPLAEQKFSHENRPSSEPQPQQPEPQTHQPEQQQQQEQTQQPEPQPEPQRNPTXXXXXXXXXXXXXXXXXXXXXXXXXXFSHPYQFIVNSEPDNELLKLQIYEDFQNLSALRNNLYAFPSDVTAEGNVLIAKFAHAVDEFVKTIQEKIIEDRGTDVLNLMKEMVERCNRKRLTLTPHYDPRVEEYVVNEVLSAFNLFEEESVKAEEEEKRRVEEEEKRKVEEEEKKKQEEQQKLSEDKGKAIAYEHDPLVLLLQEQLAAQKAEQEQIKEDVKHLTEGQHHVLKCQEDISS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQJ7</accession>
    <name>A0A392NQJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022719</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046837">
        <property type="protein sequence ID" value="MCI01692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="2">
        <location>
            <begin position="38"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="103"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21591" checksum="D622DAA7B7D5053B" modified="2018-12-05" version="1" fragment="single">MSTESSASSVNGAQAHVNLQNNSNKGYQIDILNPYFMHPNENPGNILATPLLSGPNYHSWSRAMIVALRSKHKLHFINGALPRPADDDRDSIAWDRCNTMIISWISNSVEPEISQSILWMDIAAEIWKELKDRFYQGDIFHISDPQEEIYTLKQGDCTVSTYYTKMKKLWQKLDNFSPIPHTSCNDDCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUH8</accession>
    <name>A0A392NUH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023904</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050452">
        <property type="protein sequence ID" value="MCI02870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14631" checksum="B8FB79E9AEB6E8E6" modified="2018-12-05" version="1">MTNMDINLGYWLNKSISDIAGAKKQTFSLVHCNLITAICRAQGVPNVEDESPWLPFQPITFSYFQDLDNGPVEVPVNEDEHHEPMAHQGAVDVEEDVEMMAEYNQFEHGEHPQQHQSPHHQPHHEPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWZ0</accession>
    <name>A0A392NWZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Maestro heat-like repeat-containing family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052998">
        <property type="protein sequence ID" value="MCI03699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045206">
        <property type="entry name" value="Maestro_heat-like_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23120:SF0">
        <property type="entry name" value="MAESTRO HEAT-LIKE REPEAT FAMILY MEMBER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23120">
        <property type="entry name" value="MAESTRO-RELATED HEAT DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="11974" checksum="85748749B0E36373" modified="2018-12-05" version="1" fragment="single">MGNAVINAAESGAPFPLKRRDQLLDYILTLMGRDDNDGFADYNELLRTQALAISACTTLVSVEPKLTVETRNYVMKATLGFFAIQNDPVEVVSPLIDNLISLLCAILLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXF2</accession>
    <name>A0A392NXF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine decarboxylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0025534</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the group II decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055550">
        <property type="protein sequence ID" value="MCI04487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051151">
        <property type="entry name" value="Group_II_Decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46101">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46101:SF21">
        <property type="entry name" value="SERINE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18918" checksum="BB0FC71F9676EC97" modified="2018-12-05" version="1">MPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQRCLRNAHYFKDRLIESGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEDEKCQPYCIASDVGENSCLCALHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P165</accession>
    <name>A0A392P165_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative tyrosine-protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025592</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055720">
        <property type="protein sequence ID" value="MCI04545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P165"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052847">
        <property type="term" value="F:inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052845">
        <property type="term" value="F:inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004861">
        <property type="entry name" value="Siw14-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31126">
        <property type="entry name" value="TYROSINE-PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31126:SF46">
        <property type="entry name" value="TYROSINE-PROTEIN PHOSPHATASE DSP5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03162">
        <property type="entry name" value="Y_phosphatase2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12685" checksum="8ACF47548F9F1CAA" modified="2018-12-05" version="1">MEALKVLIDVRNHPILIHCKRGKHRTGSLVGCFRKLQNWCLSSVFEEYQRFAGVKSRTADLTFIEMFDVLSLRQCLYSIIYQYQGASKKRRLMYQHENLQKPRLTSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1H4</accession>
    <name>A0A392P1H4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein phosphatase BSL3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056076">
        <property type="protein sequence ID" value="MCI04645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1H4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46422">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46422:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN PHOSPHATASE BSL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="217" mass="22882" checksum="924066047B0C53B3" modified="2018-12-05" version="1" fragment="single">AAASSNVQAGRLPGRYGFDDRPRQTMTEVAADGSVVLGNPVAPPMNGDIYTDISTENAILQGPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKHTSSLIKPDSVGSNNSASGGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVQIHLYNWLSNSIVLSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P967</accession>
    <name>A0A392P967_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">peroxidase</fullName>
            <ecNumber evidence="3">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0028524</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="9">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010065466">
        <property type="protein sequence ID" value="MCI07455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P967"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.420.10">
        <property type="entry name" value="Peroxidase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31517">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31517:SF48">
        <property type="entry name" value="PEROXIDASE 16-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00461">
        <property type="entry name" value="PLPEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 12" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="11">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI07455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9270" checksum="66E298E4793D03E6" modified="2018-12-05" version="1" fragment="single">MCPLKVDPRIAINMDPVSPKKFDNQYFKNLQQGKGLFTSDQVLFTDSRSKATVNLFASNEKAFDSAFIAAITKLGRVGVKTGNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE04</accession>
    <name>A0A392PE04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030789</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073588">
        <property type="protein sequence ID" value="MCI09700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5843" checksum="4F49B15EDF823B0D" modified="2018-12-05" version="1">MTAVMILAGDDGGHTVVVMFRPEIAAVVTATVVVDRRQWLRYGLKLVEEVVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE66</accession>
    <name>A0A392QE66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MACPF domain-containing protein CAD1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0043204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128238">
        <property type="protein sequence ID" value="MCI22030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009626">
        <property type="term" value="P:plant-type hypersensitive response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000031">
        <property type="term" value="P:regulation of salicylic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044663">
        <property type="entry name" value="CAD1/NSL1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199">
        <property type="entry name" value="MACPF DOMAIN-CONTAINING PROTEIN CAD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33199:SF15">
        <property type="entry name" value="MACPF DOMAIN-CONTAINING PROTEIN CAD1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21765" checksum="DC449663D2FFA1C9" modified="2018-12-05" version="1" fragment="single">QNRLSVHLQHLVSLPKILQPYWDSHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFIGDFSGVYIVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHIPNKSPKSTTAGNTSNADDTTNLSSRENNTTTNKLVKYVDLSEMSKGPEDPPGHWLVTGGKLGVEKGKIILRLKYSLLNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKG9</accession>
    <name>A0A392QKG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0045622</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010141480">
        <property type="protein sequence ID" value="MCI24439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5773" checksum="01D377852F96A790" modified="2018-12-05" version="1" fragment="single">TILRLVGGKEKGRGFTDNQPAANVQRRHGREVGRLTVIANSRRRSIFAVLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392US10</accession>
    <name>A0A392US10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100079</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010959510">
        <property type="protein sequence ID" value="MCI78808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392US10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7679" checksum="E316CE7CC6136EF8" modified="2018-12-05" version="1" fragment="single">MLVDSSGIIHEKHDSLLGPEDELPVPVVTGVELSAVVKHASFPYDASQLTPAVLDIGDALLADVATSPAAVATSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUP1</accession>
    <name>A0A392UUP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010959981">
        <property type="protein sequence ID" value="MCI78832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6768" checksum="79D0C7142C390196" modified="2018-12-05" version="1" fragment="single">MWNQNSNQGTQQAQQPRKPSLIEEAFNQFVKISQSNFENMQSTAVNQGASIKNLETQIGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX44</accession>
    <name>A0A392LX44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000164">
        <property type="protein sequence ID" value="MCH79520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11370" checksum="E843152F600DBEFB" modified="2018-12-05" version="1" fragment="single">MEVAGEDSGPMTGCELAVAGKSPIWCCGGRKWSLKQWSSEDDGDSVTICLVEEIELDEGRKMVLVDDQDGDGKMVQIVSLMDVEDWCYRRIVSRSSVHKEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXF1</accession>
    <name>A0A392LXF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="21">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">A2U01_0000382</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000240">
        <property type="protein sequence ID" value="MCH79629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="17" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="19">
        <location>
            <begin position="477"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="20">
        <location>
            <begin position="965"/>
            <end position="1129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="117"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1327"/>
            <end position="1380"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="17">
        <location>
            <begin position="1143"/>
            <end position="1177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="18">
        <location>
            <begin position="148"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="1327"/>
            <end position="1339"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="18">
        <location>
            <begin position="1344"/>
            <end position="1359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH79629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1380" mass="157767" checksum="11E4913FBC7B34A5" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ58</accession>
    <name>A0A392LZ58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0001045</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000866">
        <property type="protein sequence ID" value="MCH80279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0229">DNA integration</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="10" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="13">
        <location>
            <begin position="685"/>
            <end position="863"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="292"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="307"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1090"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH80279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1090" mass="123162" checksum="26B09B30DE5543FA" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0D4</accession>
    <name>A0A392M0D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001479</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Virion</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001382">
        <property type="protein sequence ID" value="MCH80706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004902">
        <property type="entry name" value="Rhabdo_ncap_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03216">
        <property type="entry name" value="Rhabdo_ncap_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="108"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="126"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="402" mass="45408" checksum="72B005E6D47ACA1B" modified="2018-12-05" version="1">MDTLYGEVNELASFSALVPKAFTVTEYDRYKPYKSGETDDGVLERRIRKFKAELDKDLPDDNCPYLVLYLAQQLKSVARPHSKRLFSDIPEGNELPEEVTTYLAAISEDQDTKTSSGKPSMEDPIDQDRQEADDRQEEEKRKGIKVGKSGSKIKPESALSPEEKVFYPYLAAYLLRMVSKTDSNAKAXMDNLFLRFSSFYSRKPPSKKIMSDSWFKLLKTLFASDPTIAITWVRTFVPYEAKEDLDSSDVGLVRYLATLPLSYTGMHAYKLFGDIKSISKLDNVTIIHGMTHALTIPGLKEIVLILNRFEKQMPGVTPPREYNPAFKYSRILSSQFFSNLQTKNCPALVYVLAELLGKYKVNTNPLQNPANIIGMSSIPDATKAALKDAVERFYQANPNQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0M2</accession>
    <name>A0A392M0M2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001577">
        <property type="protein sequence ID" value="MCH80862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0M2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17641" checksum="93707040F8734005" modified="2018-12-05" version="1">MFKKTWRETHSNKQITALVHELFTMLSMVVPHKYSKQSCGTTEQVSTREYSNMEFSYDSGQSSRGESSHRRGSIPKPPIASSDPNHPNRIFNKKLWECMKIAEVPEARQRYLMLEMTVEEKVLLADTPRKQDARTSKKKVMVMATVTVNGLLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M111</accession>
    <name>A0A392M111_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">T-complex protein 1 subunit theta-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0001705</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TCP-1 chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001653">
        <property type="protein sequence ID" value="MCH80929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M111"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.7.10:FF:000008">
        <property type="entry name" value="T-complex protein 1 subunit theta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="entry name" value="TCP-1-like chaperonin intermediate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017998">
        <property type="entry name" value="Chaperone_TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11353">
        <property type="entry name" value="CHAPERONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="GroEL apical domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH80929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="26434" checksum="4864B977ED1EF5FE" modified="2018-12-05" version="1" fragment="single">MLKLELENYSKTEEAKVEELIKAVADSGAKVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLCQPKPDDLGYIDSVSVEEIGGARVTIVKNEVDGNSVATVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAKRVKDFSFQETGLDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNTKVGIDLEPGVCKDVSTMRVWDLHVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M189</accession>
    <name>A0A392M189_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">valine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Valyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0001521</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.9" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010001439">
        <property type="protein sequence ID" value="MCH80748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M189"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="entry name" value="Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002303">
        <property type="entry name" value="Valyl-tRNA_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946:SF109">
        <property type="entry name" value="VALINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946">
        <property type="entry name" value="VALYL-TRNA SYNTHETASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="ValRS/IleRS/LeuRS editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-tRNA synthetase class Ia" evidence="9">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH80748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="25460" checksum="BAF47DCC72311980" modified="2018-12-05" version="1" fragment="single">VWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKAVTEAFVRLYKQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERTLLKVPGYDKPVEFGVLKKFAYTLEGNLGEIVVATTRIETMLGDTAIAVHPADDRYSQFHGKYAVHPFSGRKIPIICDAILVDPKFGTGAVKVGKRHNLEFINVFTDDGKVNSNGGSEFLNMPRFKAREAITEALQKKVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2X7</accession>
    <name>A0A392M2X7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Secretory pathway protein Sec39</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0002451</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002600">
        <property type="protein sequence ID" value="MCH81660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070939">
        <property type="term" value="C:Dsl1/NZR complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006890">
        <property type="term" value="P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013244">
        <property type="entry name" value="Sec39_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15922:SF2">
        <property type="entry name" value="NBAS SUBUNIT OF NRZ TETHERING COMPLEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15922">
        <property type="entry name" value="NEUROBLASTOMA-AMPLIFIED SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08314">
        <property type="entry name" value="Sec39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Sec39" evidence="5">
        <location>
            <begin position="7"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH81660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="351" mass="40512" checksum="6F5C529443A422A4" modified="2018-12-05" version="1" fragment="single">MPINEAAVALAESGKIGALNLLFKRHPYSLSPFVLEVLASIPETVPVQMYGQLLPGRSFPSGVSVRQDDWVECKKMVNFINTSVKNHDIQIQVKTEPLVKHFLGFFWPSIDELSKWYMDRARAMDDFSGQLDNCLSLLEFALRKGISELQQFHQDVLYLHQVIYSDDNDSETGFNMSLVMWGDLPDYEKFKFMLKGVKEENVTERLHNRAIPFMREKFHRVSLVGDVEESFLVRWLKEMALQNKLDMCLVVIEEGCRNFQSNVYFETEVEAVDCALQCIYLCTVIDRWSIMAAILSKLPQMHGLHYIVEKETSQGKXYKLRDGAVQAESLERRLRVAEGHIEAGRLLEFYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="32" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M471</accession>
    <name>A0A392M471_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">DEAH RNA helicase homolog PRP2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0002912</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the DEAD box helicase family. DEAH subfamily. PRP16 sub-subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the DEAD box helicase family. DEAH subfamily. PRP2 sub-subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010003226">
        <property type="protein sequence ID" value="MCH82115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M471"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18791">
        <property type="entry name" value="SF2_C_RHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1080:FF:000001">
        <property type="entry name" value="Pre-mRNA-splicing factor ATP-dependent RNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000007">
        <property type="entry name" value="Pre-mRNA-splicing factor ATP-dependent RNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1080">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011709">
        <property type="entry name" value="DEAD-box_helicase_OB_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048333">
        <property type="entry name" value="HA2_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18934:SF91">
        <property type="entry name" value="PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21010">
        <property type="entry name" value="HA2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07717">
        <property type="entry name" value="OB_NTP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04408">
        <property type="entry name" value="WHD_HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 16" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="8" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="14">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="15">
        <location>
            <begin position="100"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="539"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="545"/>
            <end position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00038040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00061257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00077342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH82115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="603" mass="68291" checksum="C755B59469168753" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M590</accession>
    <name>A0A392M590_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003359</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003840">
        <property type="protein sequence ID" value="MCH82550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M590"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8533" checksum="7BC66D3CDDC5191B" modified="2018-12-05" version="1">MSFNSATVMVSHRSSPISNMAAPFIADLKHDGTIKFFVMVLQLVPLNPPPKRRPAAMKFRPNYRGLSLGAGDNNNFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M684</accession>
    <name>A0A392M684_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002980">
        <property type="protein sequence ID" value="MCH81934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786">
        <property type="entry name" value="DNA BINDING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="386" mass="44297" checksum="FE68DEE714135092" modified="2018-12-05" version="1" fragment="single">NLTNLTQNSEVIDPSSSNAQPKTNMRSSNLPKSIPILRIDFGDECVIDSDEQDDQFEDSEVRDVNPIIRSMMYEMAEAESKYHPSSVRDVNPIIRSMMYEMAEVEICVDVGDPSFECKWCLSRMWFDERAEIEMTARNIEFSLCCQRGFVQLPFIAKPPELLLNLMNGTHPKSNHFVENLRAYNSMFSYTSLGGKVXRERNDGGGPWQFILSGQNYHRIGSLLPQRGSTPKFAQLYIYDTQNESSNRMKHVSSTEPSKALDVNLVEELKLMVDAHSQYAKKFRQVRDHVERGGSQDFCIRLFGGRSKDSRTHNLPTCDEVAALIIGDCKNLEKGRDIIVKNSCGEYQRLYETQAMFLPLQYPLLFPYGEDGFHLKIPIRSYEELKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6G6</accession>
    <name>A0A392M6G6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative bark agglutinin LECRPA3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003851</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004556">
        <property type="protein sequence ID" value="MCH83037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6G6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF49">
        <property type="entry name" value="OS10G0129200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017343312" evidence="3">
        <location>
            <begin position="29"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="Legume lectin" evidence="4">
        <location>
            <begin position="32"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16260" checksum="08D7C37C656AADFC" modified="2018-12-05" version="1">MAFSNSINVQTQKLLVLVILLLATKAHSQETVSFNFTKFTAGDSSITLQGSASVTPAGVLSLTDHSEGAGPNVGRVLYSNPISIWDSESGEAFSFVSTFTFEIITYPGDPQADGLVFFLIDPTNPTIPENSGQGYLGVVDARNALNKFVGVRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6K2</accession>
    <name>A0A392M6K2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003681</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004303">
        <property type="protein sequence ID" value="MCH82869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="231"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="281"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="491" mass="55393" checksum="D9CA55492E7C6177" modified="2018-12-05" version="1" fragment="single">VRVLQKADMKANKSKNMKPSPPEPRYIFGSEQPFKNGIAMETKKQSPAIKATLTLRQRTNPPPSNKTCQGDDLPLTSKSCQAKTRVEGSPAQLQHESSKVQAPPVHLQPIIPIPKKYYHPPSTNIPFLAPNSKRNRNDDLKVPEERPRSYTQWETAKKATSELTLKKFKPTTLIQAEKSKALKPPGKLHHNSKETETRQPELQSNQKPAVESSEKPHTQEILSNKEWIHGRTTSSNIKIQKNSYTYSSIGRNRPGSSNHQGYPSSENDKDSIQTESKIYPKKSPSSKHSGGNNKILKRTWKLGYTPTHLGGKETFLNSPTKPLPLDVKTLNPLQRCRRKKGNKALNRAQIPHWTQTLIKASERYRDTLSPKHAIKCAKPHHQSIITKAGVLKLYSQKANISLVTTLRDESKNRAKARRNSCTLTSVLNTENINKAVPKAGVQKLYSITGHTRPRYERKYRGQEKTFFITETIKPNYRAAKVKTLQNGLSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6Q8</accession>
    <name>A0A392M6Q8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004693">
        <property type="protein sequence ID" value="MCH83127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="317"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="350"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="417"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="510" mass="57322" checksum="CD6A3F5E6D104133" modified="2018-12-05" version="1">MNGPIYTELVKDFWPRCEIFTQEDADREYENKVAEDPENNRGKSRTDLGLREFTETEIKSGCTGYEVTITQSTIAELLRIPNRGVFRTFTPSSGRSSDFVERITKKCYINEDAEPTNKASDMKPTQRVLVRIMFGSFFPRGRRNRSSVLGSQTLHLFSYYWKENEFGKSIITAQNPTRKTPQVAYPRLMSELFYQCGIVKRILEAQVPDLLEEQRASFITGYTLANMRMLKEVVKTPNQPLLVKKTSGPLPEIPHMVFADEPREVILEFMRLNKASGKTLTASDIGVSSTAGKPLKRKRNDKGKVDKAVEEKKKTGKSSASGAGASEARASEGTKASENLPSENVQASEETNKEAENVQEKVHKKPRSERKNAPRVLRRLKIQEDEDTDEEPLVNKRMRTEPEKAQPASDDMDTKADTGNPNSLNDNNTVFQAQTPLISSPLNDIDPSLLQPINIIHPPQTSDLPPINSETDLETVAEGMKLAAQLQKNKTNELASLIQXXXXXXREVHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7C7</accession>
    <name>A0A392M7C7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0004039</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010004833">
        <property type="protein sequence ID" value="MCH83221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18019">
        <property type="entry name" value="DEXHc_Brr2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18795">
        <property type="entry name" value="SF2_C_Ski2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000102">
        <property type="entry name" value="RNA helicase, activating signal cointegrator 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000024">
        <property type="entry name" value="U5 small nuclear ribonucleoprotein helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000062">
        <property type="entry name" value="U5 small nuclear ribonucleoprotein helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041094">
        <property type="entry name" value="Brr2_helicase_PWI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050474">
        <property type="entry name" value="Hel308_SKI2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057842">
        <property type="entry name" value="WH_MER3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961:SF4">
        <property type="entry name" value="ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961">
        <property type="entry name" value="DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18149">
        <property type="entry name" value="Helicase_PWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23445">
        <property type="entry name" value="WHD_SNRNP200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 12" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="7" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="10">
        <location>
            <begin position="273"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="11">
        <location>
            <begin position="483"/>
            <end position="685"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="136"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="136"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="709"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH83221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="709" mass="80569" checksum="8D33624849826C13" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7S3</accession>
    <name>A0A392M7S3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Protein PAT1-like</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005326">
        <property type="protein sequence ID" value="MCH83520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000290">
        <property type="term" value="P:deadenylation-dependent decapping of nuclear-transcribed mRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033962">
        <property type="term" value="P:P-body assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039900">
        <property type="entry name" value="Pat1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21551">
        <property type="entry name" value="TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21551:SF25">
        <property type="entry name" value="TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="517" mass="56640" checksum="022D3AACAA2F27D7" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M808</accession>
    <name>A0A392M808_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003731</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004378">
        <property type="protein sequence ID" value="MCH82918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="15118" checksum="BC0A154A0920E3B9" modified="2018-12-05" version="1">MXGRGEVELLHRAVHRRRPHCRCYVLKGRVSVVEDHWLKESVATQPFCCVATAVFSSPASCSHGSLIYWLKFGEGEKRRHNLKERIRFRFWCPDPHNHRRMTLQRFKSQTSALQTNDQTSITTYVACNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M850</accession>
    <name>A0A392M850_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005452">
        <property type="protein sequence ID" value="MCH83596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M850"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="12"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6404" checksum="77F211276596871C" modified="2018-12-05" version="1" fragment="single">TFPSRMNKDDTMSTSSQGSMGSNMFEGLAGESQPEEPVLEDFWDAMIQSMSKKGKNPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8K6</accession>
    <name>A0A392M8K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative zinc finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005821">
        <property type="protein sequence ID" value="MCH83827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8367" checksum="00EFAFF8F46C835D" modified="2018-12-05" version="1">MLGCALCRHCLLCVSDETVSSKVALDLSINQIMNVLSSQQRLDNASMETIGQLGEHVMTQTFVQESCDNITANLHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9A1</accession>
    <name>A0A392M9A1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein transport protein SEC23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0004605</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasmic vesicle</location>
            <location evidence="7">COPII-coated vesicle membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
            <orientation evidence="7">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Endoplasmic reticulum membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
            <orientation evidence="7">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SEC23/SEC24 family. SEC23 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005737">
        <property type="protein sequence ID" value="MCH83779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9A1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030127">
        <property type="term" value="C:COPII vesicle coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070971">
        <property type="term" value="C:endoplasmic reticulum exit site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090110">
        <property type="term" value="P:COPII-coated vesicle cargo loading"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01468">
        <property type="entry name" value="trunk_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.380:FF:000013">
        <property type="entry name" value="Protein transport protein SEC23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.410:FF:000057">
        <property type="entry name" value="Protein transport protein SEC23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.380">
        <property type="entry name" value="Zn-finger domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037364">
        <property type="entry name" value="Sec23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006896">
        <property type="entry name" value="Sec23/24_trunk_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006895">
        <property type="entry name" value="Znf_Sec23_Sec24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036174">
        <property type="entry name" value="Znf_Sec23_Sec24_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11141">
        <property type="entry name" value="PROTEIN TRANSPORT PROTEIN SEC23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11141:SF6">
        <property type="entry name" value="PROTEIN TRANSPORT PROTEIN SEC23 A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04811">
        <property type="entry name" value="Sec23_trunk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04810">
        <property type="entry name" value="zf-Sec23_Sec24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81995">
        <property type="entry name" value="beta-sandwich domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82919">
        <property type="entry name" value="Zn-finger domain of Sec23/24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="2 7" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4 7" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <keyword evidence="3 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Zinc finger Sec23/Sec24-type" evidence="9">
        <location>
            <begin position="183"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Sec23/Sec24 trunk" evidence="10">
        <location>
            <begin position="265"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="8">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="52"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="98"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="113"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="551"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH83779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="551" mass="58995" checksum="6EA31806B21B04B9" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAG3</accession>
    <name>A0A392MAG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006322">
        <property type="protein sequence ID" value="MCH84139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9348" checksum="9AD42CA8A4400A48" modified="2018-12-05" version="1">MRLKTKSRICADKLQHKPERRRRSSNDSDSNLGMKRQSRFAQKQIQQDPEPPDQQPPGNWCLSGADGKHRSSHHPPQSLHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAK0</accession>
    <name>A0A392MAK0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Acyl carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0005298</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006857">
        <property type="protein sequence ID" value="MCH84466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000035">
        <property type="term" value="F:acyl binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="entry name" value="ACP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00517">
        <property type="entry name" value="acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="ACYL CARRIER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863:SF71">
        <property type="entry name" value="ACYL CARRIER PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="ACP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 8" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="9">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH84466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5459" checksum="0BFAB9BD98A82733" modified="2018-12-05" version="1" fragment="single">NDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSINLAVDFIASHPQAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCD4</accession>
    <name>A0A392MCD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008015">
        <property type="protein sequence ID" value="MCH85162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9212" checksum="6C36F027D64CE27E" modified="2018-12-05" version="1">MAYECVVCCGARGRLRNVRTEAYKILKYIFSPSPWILSCFGGLLDLSVGGYGLCEVVIEIIKDMDCESTSVLQEPVLLQCGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCT3</accession>
    <name>A0A392MCT3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007507">
        <property type="protein sequence ID" value="MCH84869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023:SF5">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21955" checksum="40ADCF27EC09B493" modified="2018-12-05" version="1" fragment="single">FISLESDSAVAVSLINKGCPPSHPCATIVSLINRLKTKDWQVQISQIYRQTNQIADWIADYALSIPTGGQRETLRGVGSHDVCNRMLIASIGRIDGSSLRWSSKPCNDRTTTVDRGVCLERKLVRWRRGAWWYFAMELVVADEEERLSVCKKDATLVDTTKTINRRSLRYASPLLEEMTWTGTLGGTLEWFVNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCU4</accession>
    <name>A0A392MCU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MATE efflux family protein 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005811</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007698">
        <property type="protein sequence ID" value="MCH84973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11206">
        <property type="entry name" value="MULTIDRUG RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="86"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="122"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="150"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="185"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="26412" checksum="17DE56C3AC9023FE" modified="2018-12-05" version="1" fragment="single">MISXLLHNPLGHLLSDFRYRGGMGLLRVSHQKSVINIIDAAAVAVIMLTKRYLDCNVGMASALDTLCGQSYGAKQYRMLGVHMQRAMFILMIAAIPLAIIWANTRSILTFLGQDPEISREAGNYATLMVPCLFAYGLLQCLNRFLQTQNIVFPMMFSSAVTTLLHLPLCWIMVYKSGLGSRGAAIANSISYWVNVTILSLYVKFSPSCKKTWNGFSKEALALNNIPIFLKLAIPSAVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDU5</accession>
    <name>A0A392MDU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleolar GTP-binding protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006489</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008879">
        <property type="protein sequence ID" value="MCH85640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.1190:FF:000001">
        <property type="entry name" value="Nucleolar GTP-binding protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041623">
        <property type="entry name" value="NOG1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45759">
        <property type="entry name" value="NUCLEOLAR GTP-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17835">
        <property type="entry name" value="NOG1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NOG1 N-terminal helical" evidence="2">
        <location>
            <begin position="66"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="226" mass="25521" checksum="50176817D2B16935" modified="2018-12-05" version="1" fragment="single">MDCQPNSQAQSLRPITDLKQKQNSTAAAKFHTKQGAAAAASLPPPNPTRRKTQPHFVDAGITKKLQKITVVPNGKDFIDIILSRTQRQTPTVVHKGYAISRLRQFYMKKVKCTQTNFHEKLSTIIDEFPRLGDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIANDYVKLLKYGDSLYRCKCLKVAALGRMSTVLKRIGPSLAYLEQVRQHMARLPSIDPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME04</accession>
    <name>A0A392ME04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0006347</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008628">
        <property type="protein sequence ID" value="MCH85501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="4">
        <location>
            <begin position="45"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="5">
        <location>
            <begin position="269"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="22"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH85501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="511" mass="58723" checksum="9E2049B9C5652147" modified="2018-12-05" version="1">MKGQQESTEEQALKVSNGRGSGRGRGRSSNRGRGRGRQSKELVECYKCHKLAHYQSECPTWEGNAHYAEFNDDEDMLLMAKTEEQNFNKIETWFLDSGCSNHMVGHKEWLFEFDDSYKDSVKLGDDSKMDVKGKGNIKLSINNIVHVISNVYYVPGLKTNLLSIGQLQQRQISIIFKNDMCKVFHDDRGLLFTTHMSKNRMYVITAPMIIPMCLKTTKQESTQLWHDKYGHLSFKGLNTLSRKQMVNGLPELEEIEENCADCLSGKQHRDTVPKQANWRASMKLELIHSDICGPITPQSNGGNRYFMTLTDDYSRKTWSYILKEKSNAFEVLKNFKALVEKETGCSILCLRTDRGGEYTSNEFNEFCSNEGIKRQLTTAYTPQQNGVSERKNRIILNIVRSMINARRVPKTFWPEAVKWATYVMNRSPTFSVKDMTPEEAWSGSKPSVHHFRIFGCLAHVHIPDKQRKKLDNKSKRCVLLGVSDESKAYKLYDPVDKKIIISRDVVFEESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME86</accession>
    <name>A0A392ME86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Kinesin-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006637</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009132">
        <property type="protein sequence ID" value="MCH85786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031852">
        <property type="entry name" value="Vik1/Cik1_MT-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KLP-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47972:SF62">
        <property type="entry name" value="P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16796">
        <property type="entry name" value="Microtub_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 2" id="KW-0505">Motor protein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Kinesin motor" evidence="3">
        <location>
            <begin position="1"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="20"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="244" mass="26288" checksum="CD56A86701C89B6B" modified="2018-12-05" version="1" fragment="single">MQPLVRSVLDGFNVCIFAYGQTGSGKTFTMTGLKKTMTGPKEITEKSQGVNYRALKIRSNSQRGLSVPDASLVQVSSTNDVIELMNLGHKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGKXXXXGILIGSGKYRTTASELSPYHASQRAADIVDGPFGCRQPMFDVGNLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MED6</accession>
    <name>A0A392MED6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0006255</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010008453">
        <property type="protein sequence ID" value="MCH85409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MED6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000106">
        <property type="entry name" value="Non-specific serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000063">
        <property type="entry name" value="Non-specific serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000961">
        <property type="entry name" value="AGC-kinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050839">
        <property type="entry name" value="Rho-assoc_Ser/Thr_Kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22988:SF76">
        <property type="entry name" value="CHROMOSOME UNDETERMINED SCAFFOLD_135, WHOLE GENOME SHOTGUN SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22988">
        <property type="entry name" value="MYOTONIC DYSTROPHY S/T KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51285">
        <property type="entry name" value="AGC_KINASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="AGC-kinase C-terminal" evidence="11">
        <location>
            <begin position="100"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH85409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="15636" checksum="C8404CB5967BCE9E" modified="2018-12-05" version="1" fragment="single">GTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDPHVTFEAKDLIYRLLCDVDNRLGTRGAQEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEI1</accession>
    <name>A0A392MEI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinesin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009374">
        <property type="protein sequence ID" value="MCH85912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="32"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="225" mass="25642" checksum="A967D52CD42A08D0" modified="2018-12-05" version="1">MLGECQILLLHRTLQDYTPDRWQWQPDLDTGYIVRGAYQLLTAQDTVTLDVVAGLIWHSEVPLKVSIFAWRLLRDRIPTKANLVSRGILSQEAHYCVFGCGAFESAQHVFLSCSIFGSLWSLVSSWIGSSLVTAQTLSDHFVRFTSSAGGSRARRSFMQLIWFACVWVVWTERNHRLFRGSANSVHQMLDKIKTFSYRWLKATSITLALNCHSWWSSPLLCLGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEW2</accession>
    <name>A0A392MEW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006880</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009600">
        <property type="protein sequence ID" value="MCH86026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218:SF9">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="384" mass="44690" checksum="A0699CC186F84AC3" modified="2018-12-05" version="1">MSIISWNCRGLGNPSVVSKFKYLIRYYNPDAIFLCETLVNSHKVEELRCLLGYDNCFAVDREGRGGGVALLWRSSLQCNITNFSSNHINVEIVDANRGMWRLTGFYGYPGGSRRRESWNFIRRLSRDSHLPWCIIGDFNDILSASEKKGRTERANWLINGFRQAVLDSGLSDVHMEGYLFTWFKSLGTPRAVEERLDRALANEAWFHMFPHAKLANLVAPSSDHYPILLDRDPIVRTSRVRKSFKFENAWCVEPDFDDIVQRSWQSNMDRTILPRLEGCAEDLTHWKKDHCHYLKKEIEECRXXXXXXXXXXXXXXXXXXXXXXXXMTHLLVKEDLFWRQRAKKHWYRDGDLNTRFFHASATARKKVNRILYLEDQNGCTGPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFT0</accession>
    <name>A0A392MFT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007922">
        <property type="protein sequence ID" value="MCH85114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48440:SF1">
        <property type="entry name" value="PAW DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="18003" checksum="FFFA7F5B79FC5276" modified="2018-12-05" version="1" fragment="single">MFTLPLLKLNRLHSGSVVASAEELPLGIATSAFDGTQISKWEEPNGAKGHKINEKIHNLDMKDNQARNLSILSLNASVDRCWIVYRTFNDKKYELVAYELMSANDAPERDPMDWILEGSNDEGNSWQVLDKQTSQFFKDRFQRKTYMINSASSPSNLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG04</accession>
    <name>A0A392MG04_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Digalactosyldiacylglycerol synthase 2, chloroplastic</fullName>
            <ecNumber evidence="11">2.4.1.241</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0007294</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid and in nodule peribacteroid membranes. Specific for alpha-glycosidic linkages.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a 1,2-diacyl-3-O-(beta-D-galactosyl)-sn-glycerol + UDP-alpha-D-galactose = a 1,2-diacyl-3-O-[alpha-D-galactosyl-(1-&gt;6)-beta-D-galactosyl]-sn-glycerol + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10520"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17615"/>
            <dbReference type="ChEBI" id="CHEBI:28396"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="2.4.1.241"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Plastid</location>
            <location evidence="10">Chloroplast outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase group 1 family. Glycosyltransferase 4 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.241" evidence="11"/>
    <dbReference type="EMBL" id="LXQA010010308">
        <property type="protein sequence ID" value="MCH86437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009707">
        <property type="term" value="C:chloroplast outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046481">
        <property type="term" value="F:digalactosyldiacylglycerol synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019375">
        <property type="term" value="P:galactolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009877">
        <property type="term" value="P:nodulation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01635">
        <property type="entry name" value="Glycosyltransferase_GTB-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000084">
        <property type="entry name" value="Digalactosyldiacylglycerol synthase 2 chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044525">
        <property type="entry name" value="DGDG1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46132">
        <property type="entry name" value="DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46132:SF1">
        <property type="entry name" value="DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13692">
        <property type="entry name" value="Glyco_trans_1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0536">Nodulation</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="8" id="KW-1002">Plastid outer membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00057281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00071330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH86437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="280" mass="31709" checksum="65F9599998F542F1" modified="2018-12-05" version="1" fragment="single">VIRLSAATQDYHGSIVCNVHGINPKFLEIGKKKREQQENGDKAFTKGAYFIGKMIWSKGYKELLELLKDHQKELAALEFDLFGSGEDSEDVQKAAKKLEMTVRVHPARDHADDLFHDFKLFLNPSTTDVVCTTTAEALAMGKIVVCANHCSNEFFKQFPNCWTYDNHKEFVELTLKAFSEEPAQPTDAQRHELSWEAATERFLKAVDLDKPFERKVLSRTTSNYMSTSINFQQSVEDASAFVHHVASGFEVSRRIFGAIPDSLQPDEQLRKELGFSNPAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH40</accession>
    <name>A0A392MH40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc finger protein 598-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007667</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010980">
        <property type="protein sequence ID" value="MCH86807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072344">
        <property type="term" value="P:rescue of stalled ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057634">
        <property type="entry name" value="PAH_ZNF598/HEL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056437">
        <property type="entry name" value="Znf-C2H2_ZNF598/HEL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044288">
        <property type="entry name" value="ZNF598/HEL2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22938:SF0">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE ZNF598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22938">
        <property type="entry name" value="ZINC FINGER PROTEIN 598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23202">
        <property type="entry name" value="PAH_ZNF598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23230">
        <property type="entry name" value="zf-C2H2_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ZNF598/HEL2 C2H2 zinc finger" evidence="3">
        <location>
            <begin position="2"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="ZNF598/HEL2 PAH" evidence="2">
        <location>
            <begin position="329"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="214"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="426" mass="47192" checksum="9C3A2BB12DAA73D5" modified="2018-12-05" version="1" fragment="single">IHFRQQHFLCEDEACLAKKFIVFQSESEMKRHNAMEHGGRMSRSKRNAALQACTITIFSSRNHFSCLLIPTSFRYRHNNEQDQRRGRGRTFRRDHSENQLSMAIEASLETANAEQTYREPTSSNGQIAYDDRDADIGSIINPFESLATAGSESTSRYRQALGHSSKPLVDSSFPPLPVTSSNGKQRSKHELEGSSSNTMAARLRQHGNRNISVINSGNAWSVPGRGPVQPSSTPSQSKKSKNRALGGSQNSGQTKTVINSVIPPSSYANSIQAAXXXXXXRIVHSASAPNLVENNPVGVSISDFPPVSAAQGSKLPMSSQPPLNVENVQSANKSLVEKIRSALDFDEDRYTIFKDISAQYRQGTIDTDTYVDYVQQFGLFELVPELARLCPDPRKQKELVESYNAGLHRNAFQENDRVYGSASTQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH94</accession>
    <name>A0A392MH94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010532">
        <property type="protein sequence ID" value="MCH86563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7391" checksum="AFEE54DF09E391DB" modified="2018-12-05" version="1" fragment="single">DVRVSTPFNDVVAVDVAEDVRVSIPFENVGDEIAGVVAEPNVDNVADEVAESVVAEPNVDNVADEVAEGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHN1</accession>
    <name>A0A392MHN1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ubiquitinyl hydrolase 1</fullName>
            <ecNumber evidence="3">3.4.19.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0007464</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11 12">
            <text>Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).</text>
            <dbReference type="EC" id="3.4.19.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.12" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010010599">
        <property type="protein sequence ID" value="MCH86605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029346">
        <property type="entry name" value="USP_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14533">
        <property type="entry name" value="USP7_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0788">Thiol protease</keyword>
    <keyword evidence="5" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Ubiquitin carboxyl-terminal hydrolase C-terminal" evidence="8">
        <location>
            <begin position="2"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH86605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="17653" checksum="4DFA470CCDE20E5C" modified="2018-12-05" version="1" fragment="single">VFPSNEKIENINDQYWTLRAEEIPEEEKNIGPQDRLIHVYHFTKDTAQNQMQIQNFGDPFFLVIHEGEALSEIKVRIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQVGKFSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI61</accession>
    <name>A0A392MI61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010926">
        <property type="protein sequence ID" value="MCH86775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11030" checksum="DC1F518015096F16" modified="2018-12-05" version="1" fragment="single">LCKHFRASSTATTWDTTASLSFDIIEGNEIASTFDNCGSVKLGFYILMEEIQIGNEIASTFAAVFATFKESLKFSPSISTDVWYGQIKLLLWRLRLKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJI7</accession>
    <name>A0A392MJI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rab3 GTPase-activating protein catalytic subunit-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011821">
        <property type="protein sequence ID" value="MCH87245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045700">
        <property type="entry name" value="Rab3GAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21422">
        <property type="entry name" value="RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21422:SF9">
        <property type="entry name" value="RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14641" checksum="0CF998AA8B025693" modified="2018-12-05" version="1" fragment="single">FELTTIWSEKMIESSMEMAELENASPHEAEKWLIALRPEGSKESRIGFASQLHLLVDALQMSFEAHFIEDFVSAAENPGSDNLKSSMVIPSPTVRDRVLKELFIEVTSYIWSTNLPHGQGTGVLGYQREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKG5</accession>
    <name>A0A392MKG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008550</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012694">
        <property type="protein sequence ID" value="MCH87673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9630" checksum="BA23AD09CD471D21" modified="2018-12-05" version="1" fragment="single">MSKVRVGIRQRRASRSDILENDARLRDVMLGNLWNRRGRKGIVWLVIVTVDRRRLVMERNCLETTERDIKVPWSSLSRNLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKH1</accession>
    <name>A0A392MKH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative indole-3-acetic acid-amido synthetase GH3.5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008084</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IAA-amido conjugating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011762">
        <property type="protein sequence ID" value="MCH87218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016881">
        <property type="term" value="F:acid-amino acid ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004993">
        <property type="entry name" value="GH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055377">
        <property type="entry name" value="GH3_M"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31901">
        <property type="entry name" value="GH3 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31901:SF46">
        <property type="entry name" value="INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03321">
        <property type="entry name" value="GH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23571">
        <property type="entry name" value="GH3_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GH3 middle" evidence="3">
        <location>
            <begin position="174"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="24852" checksum="23AE759F63FE7BA4" modified="2018-12-05" version="1" fragment="single">MNTLQIQYCTPDEVILCPDFFQSLYXHLLSGLICREEVEFVSSPFAHNIVHAFRTFEQVWEELCTDIREGILTNKVTDPSTRMAMSKLLKPNPELANIIHKKCMELNNWYRLIPELFPNVKYIFGVMTGSMEPYLRKLRHYAGDIPLVTSFYGASEGLIGVNVNPKLPPELATYVVLPQNGYYEFIPLTQVVNKDPQPLGLAEVKVGEEYEIVVTNPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLJ7</accession>
    <name>A0A392MLJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014038">
        <property type="protein sequence ID" value="MCH88370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF62">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="456" mass="52407" checksum="92C1239024A2D944" modified="2018-12-05" version="1">MSSTVTTSILDQNSQSITITITNADAQCTCTSVYASPNSTTRATLWNHLINLKQNIIGPWLLLGDFNETLLPSDQRGGVFSPSRAAVFANFIYNCDLLDLSTTGARFTWHRNNHGHRILSKKLDRGLANVHWXXXXXXXXXXXXXRLHSDHNPILLRFGGLPLARGPRPFRFEAAWIDHSDYMSVVEHAWHSSNHNLVTALQLVKEESLKFNHDTFGNIFQRKKHIEARLKGVQNYLERVDSIFHIQLEKTLQREYNHILFQEEIHWYQKSREQWVKLGDKNSSFFHAQTIIRRKRNKIHKIRLPDGNWTSDSSIIQHEAQRYFKTLFSSSTDHPTTNFPTTTHSHLAINDHDALIKPITKEEVTLALNSMKPFKAPGPDGFQCIFFKQYWHIVGDDVFKLVKDAFAYGHFDPTISDTLIALIPKVDSPTTFKELRPISLCNIVYKLITKVKLSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM99</accession>
    <name>A0A392MM99_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="4">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0009098</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SINA (Seven in absentia) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010013734">
        <property type="protein sequence ID" value="MCH88215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM99"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000041">
        <property type="entry name" value="E3 ubiquitin-protein ligase SINAT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.210.10:FF:000004">
        <property type="entry name" value="E3 ubiquitin-protein ligase SINAT5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018121">
        <property type="entry name" value="7-in-absentia-prot_TRAF-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052088">
        <property type="entry name" value="E3_ubiquitin-ligase_SINA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013010">
        <property type="entry name" value="Znf_SIAH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10315">
        <property type="entry name" value="E3 UBIQUITIN PROTEIN LIGASE SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10315:SF117">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03145">
        <property type="entry name" value="Sina_TRAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21361">
        <property type="entry name" value="Sina_ZnF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51081">
        <property type="entry name" value="ZF_SIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 10" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SIAH-type" evidence="11">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH88215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21884" checksum="BA3535FF804CA812" modified="2018-12-05" version="1" fragment="single">YQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSAIGDISYLVAHLKHDHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMS5</accession>
    <name>A0A392MMS5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ABC-type xenobiotic transporter</fullName>
            <ecNumber evidence="3">7.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0009725</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + H2O + xenobioticSide 1 = ADP + phosphate + xenobioticSide 2.</text>
            <dbReference type="EC" id="7.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010014942">
        <property type="protein sequence ID" value="MCH88832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008559">
        <property type="term" value="F:ABC-type xenobiotic transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03244">
        <property type="entry name" value="ABCC_MRP_domain2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000163">
        <property type="entry name" value="Multidrug resistance-associated protein member 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF367">
        <property type="entry name" value="ABC-TYPE XENOBIOTIC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="111"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00034018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH88832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="34330" checksum="EBEC6370351225BE" modified="2018-12-05" version="1" fragment="single">MRMNGTTKSSLANHVNETVAGAVTIRAFEEEDRSFNKNLDLIDINASAFFHSFASNEWLIQRLETISAVVLTAAALCIVMFPPGTFTSESEAEEIVEGNRPPQNWPVAGKVEINDLKIRYRPDGPLVLNGITCTFKEGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGLDISSIGLHDLRLRFGIIPQDPTLFNGTVKYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEDGLNSSVCEDGSNWSMGQRQLFCLARALLRKSRILVLDEATASIDNSTDLIMQKTIRTEFADCTVITVAHRIPTVMDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMX0</accession>
    <name>A0A392MMX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative E3 ubiquitin-protein ligase LIN-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008869</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013291">
        <property type="protein sequence ID" value="MCH87988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35549">
        <property type="entry name" value="OS04G0584500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35549:SF2">
        <property type="entry name" value="TRANSDUCIN_WD40 REPEAT-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13783" checksum="4972B6AF018E9F60" modified="2018-12-05" version="1">MVRKLQGDEWQAALHFLQAVLVSPMLVWNEFAPQLCESLFRKHGNRSLEFVSSSNSEEEIDEVFVKEKARRYKECLVYYQVMLYGEIPWWSSYCSKNSASYIYYESSGDKGSGNPKFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNM5</accession>
    <name>A0A392MNM5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Formate dehydrogenase 1 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015549">
        <property type="protein sequence ID" value="MCH89136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4420" checksum="22A27567474641EA" modified="2018-12-05" version="1" fragment="single">LRYSSGVKDMLERHFKGEDFPEQNYIVKQGELASQYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP03</accession>
    <name>A0A392MP03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0009984</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015448">
        <property type="protein sequence ID" value="MCH89091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF568">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="12"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="155"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH89091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="23940" checksum="C55E07F97D17AB40" modified="2018-12-05" version="1">MSSRLSLLNDRRLKQTKALLVLDDVNNSAQLKDLIGMRSNFAPSSRIIVTSRDMQVLKNVDADEIYEVKEMNFHESLRLFCLNAFKQNNPIEDYAGLTDKILNYAKGVPLALKVLGFLLCGRTKEAWESQLQKLDKLPENDIFKVLKLSYEGLDEEQKDIFLDIACFYRGHLENVVAQTLDSCGFSAHIGMEVLKDRALXXXXXXXXXXXA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP10</accession>
    <name>A0A392MP10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013319">
        <property type="protein sequence ID" value="MCH88004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="31732" checksum="9618306C6E05611B" modified="2018-12-05" version="1" fragment="single">MQQLEGFVEDKSKVCLLKKSLFELKQSLRQWYRRFNKFLLKAGFERSNYDSCVYMMKRNEKVILYLLLYVDDILIASSNKQEIQKLKMKLNDEFEMKDLSNAKKILSMDIMRDRSKGELFLSQQGYLRKVVEQFRMTDSKVVNTPLGHHSKLSIKQCPQSEKERKKMESTPCASRVGCIMYGIVCSRPDLSYVISVVRQFMANPGQVHWQALKWVLRYLNGSLKGGLKYKRIDRGRDDLEGYLDVDYVGFFAPGEKHAQGKEHSSDFFAWGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPX3</accession>
    <name>A0A392MPX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin carboxyl-terminal hydrolase 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010327</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016136">
        <property type="protein sequence ID" value="MCH89431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140096">
        <property type="term" value="F:catalytic activity, acting on a protein"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024729">
        <property type="entry name" value="USP7_ICP0-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12436">
        <property type="entry name" value="USP7_ICP0_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Ubiquitin carboxyl-terminal hydrolase 7 ICP0-binding" evidence="2">
        <location>
            <begin position="2"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12977" checksum="0D56C71444711B3F" modified="2018-12-05" version="1" fragment="single">VVHFRLLEKPKDDHFSIELSKLHTYDDVVERVAQQLGLDDPSKIRLTSHNCNTLQPETQPIKYQGVEHLSDMLVLYNKTSNVLYYEVLDTPLPEFQSLRIVKVAFHDATRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQB0</accession>
    <name>A0A392MQB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PHD finger-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010481</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016451">
        <property type="protein sequence ID" value="MCH89581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="196"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="293"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="213"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="243"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="342" mass="37855" checksum="8E02A0C697914AA6" modified="2018-12-05" version="1" fragment="single">PKSNEISRRLSTENKKSISKKFEKPKCAPTSKSSEQIKHDNQVDDADNQTLSIKPIRSVFPPHDADSEKGLVDSFKEARSSILLEGVTEKHKLDDSVDLTTKLDKVIAQEHGNCGDKLMLNHDLLVSTDDQEEQACINESRKRSSHHGNVDQESEKRQEFKMSKSWKTSGKRTLIEKNDRKGLGVSSQLFKEKGVVSQASRCIKRAPGHQGRSHSEIEKGTSVKNADENQNREEEKHRRESNARQQVGPSGVQDPNATQNDHLSGHNPCANKHAQLSTASKSLNKMNTLAADESNLVRTGSPTPDPPIFSGNGTFERIVPPGFAAGPNYAFSLHHSAGWLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR47</accession>
    <name>A0A392MR47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009646</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014768">
        <property type="protein sequence ID" value="MCH88754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043459">
        <property type="entry name" value="NFD6/NOXY2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33156">
        <property type="entry name" value="OS02G0230000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33156:SF37">
        <property type="entry name" value="PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC_MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8188" checksum="8FA24B33BAD08460" modified="2018-12-05" version="1" fragment="single">MASSFCKSAVRVASSSFANRSRTFAQKPSIPLLFSSQAPRVSRILSVVGSVESLMPLHSAIADARLTSNIASNSTCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRB0</accession>
    <name>A0A392MRB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative E3 ubiquitin-protein ligase ARI8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0010683</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016883">
        <property type="protein sequence ID" value="MCH89782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036443">
        <property type="entry name" value="Znf_RanBP2_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90209">
        <property type="entry name" value="Ran binding protein zinc finger-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RanBP2-type" evidence="4">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH89782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12330" checksum="F60D5FC6900D56DB" modified="2018-12-05" version="1">MDICIWQFLIAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVFSKATSSKNAAGSSKGRAARMRISRTADDSPWSCEHCTSMNARSLSTCQICNQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRH4</accession>
    <name>A0A392MRH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Low affinity sulfate transporter 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010947</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017471">
        <property type="protein sequence ID" value="MCH90041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001902">
        <property type="entry name" value="SLC26A/SulP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11814">
        <property type="entry name" value="SULFATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="SLC26A/SulP transporter" evidence="6">
        <location>
            <begin position="3"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH90041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="15407" checksum="A76D9C8DC7B7EC03" modified="2018-12-05" version="1" fragment="single">ARRKKNLFWLPAIAPLLSVILSTLIVYLTKADKQGVNIIKHVKGGLNQSSVHQLQFHGQNVGQAAKIGLVCAVIALTEAMAVGRSFASIKGYQLDGNREMFSMGMMNIAGSLSSCYVATGSFSRTAVNFSAGCQTAISNIVMALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT22</accession>
    <name>A0A392MT22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018710">
        <property type="protein sequence ID" value="MCH90621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="12228" checksum="3CB66E069A7BAFDA" modified="2018-12-05" version="1">MAKKPRRKAIKHTLTHGCRQWHMSKYMTNVVNTCDETVFRPGNFGTALIGKFHTMEMVKKENVLDKFLSDSRLQQGWETRWKSKNYYYILNGEIFKEDRIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTB3</accession>
    <name>A0A392MTB3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">histone acetyltransferase</fullName>
            <ecNumber evidence="3">2.3.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0011719</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acetyltransferase enzyme. Acetylates histones, giving a specific tag for transcriptional activation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-lysyl-[protein] + acetyl-CoA = N(6)-acetyl-L-lysyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:45948"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="EC" id="2.3.1.48"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.48" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010019078">
        <property type="protein sequence ID" value="MCH90796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTB3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000123">
        <property type="term" value="C:histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004402">
        <property type="term" value="F:histone acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd15614">
        <property type="entry name" value="PHD_HAC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.110.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031162">
        <property type="entry name" value="CBP_P300_HAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013178">
        <property type="entry name" value="Histone_AcTrfase_Rtt109/CBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038547">
        <property type="entry name" value="RING_CBP-p300_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13808">
        <property type="entry name" value="CBP/P300-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13808:SF1">
        <property type="entry name" value="HISTONE ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51727">
        <property type="entry name" value="CBP_P300_HAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0804">Transcription</keyword>
    <keyword evidence="9" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CBP/p300-type HAT" evidence="13">
        <location>
            <begin position="170"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH90796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="230" mass="26996" checksum="C2E7943824F5B08D" modified="2018-12-05" version="1" fragment="single">MRSTLFNMLGYVTHRKAESKSKAEKNQAMEHAMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTEHIVVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERMPLPQSAVLGAKDLPRTILSDHIEQRLFKRLKHERQERARFHGKTYDEKEKLREICLEFGKKIWRESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTK3</accession>
    <name>A0A392MTK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018766">
        <property type="protein sequence ID" value="MCH90643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7321" checksum="7F1379A07486C60C" modified="2018-12-05" version="1">MNVNQYYTRSHVCESKYELELGAAEDTXGLIEAVVGTGNTIREEDEGGGGKTREGTGFVDLTILGIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTL7</accession>
    <name>A0A392MTL7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018809">
        <property type="protein sequence ID" value="MCH90663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11879" checksum="4169E647850B641B" modified="2018-12-05" version="1">MSGECQALLHGLFLQAQYSDMWQWQRDPDRGYSVRSAYQLLTSQQPVTLDEAEDLVLAQTGSLEGVYFFPETLARHVTNKRKSGKSRHHHSRSSLLCVRLRRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTM0</accession>
    <name>A0A392MTM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011829</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019311">
        <property type="protein sequence ID" value="MCH90906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23246" checksum="AB51F221C9DC9DAA" modified="2018-12-05" version="1" fragment="single">MASATMAILMVALWHNGHRYIELQQEGNCNLCHHNSNTITDLITHMKARIHKDNLFKAKNTVLRQQSSLVNDPELIVDNFDFGEADAISDEVNSDFVPALGIEKEFDEIYSLWCEWGNVNPQPNVVDEDDQHDHDDGDSNRVKDRIDAIIVMKGSSNNASEICFLCDHRMNADMDVAALLDSQNNRIICCNWKLFSARNKGKDLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTZ2</accession>
    <name>A0A392MTZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">6-phosphofructokinase 5 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0011864</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019382">
        <property type="protein sequence ID" value="MCH90941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTZ2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003872">
        <property type="term" value="F:6-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.460">
        <property type="entry name" value="Phosphofructokinase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050929">
        <property type="entry name" value="PFKA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000023">
        <property type="entry name" value="Phosphofructokinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035966">
        <property type="entry name" value="PKF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45770">
        <property type="entry name" value="ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00365">
        <property type="entry name" value="PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53784">
        <property type="entry name" value="Phosphofructokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphofructokinase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH90941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="17864" checksum="6D4EF9C80F558FD4" modified="2018-12-05" version="1" fragment="single">MIFVLGGNGTHAGANAIHNECCKRQLKVSVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGVVKLMGRSSGFIAMQASLSSGQVDVCLIPEVPFNLHGPHGVLRHLQYLLEMKGSAVVCVAEGAGQNLLQNTNAKDASGNIVFGDIGVYIQQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWP8</accession>
    <name>A0A392MWP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Serrate RNA effector molecule-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0012043</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ARS2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019735">
        <property type="protein sequence ID" value="MCH91118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016604">
        <property type="term" value="C:nuclear body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031053">
        <property type="term" value="P:primary miRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039727">
        <property type="entry name" value="SE/Ars2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007042">
        <property type="entry name" value="SERRATE/Ars2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13165">
        <property type="entry name" value="ARSENITE-RESISTANCE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13165:SF0">
        <property type="entry name" value="SERRATE RNA EFFECTOR MOLECULE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04959">
        <property type="entry name" value="ARS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2H2-type" evidence="5">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="121"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="247"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="140"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="262"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="282" mass="31486" checksum="4B9DD7D7BB3F8915" modified="2018-12-05" version="1" fragment="single">TDAKGFRHVRPERTGHAETGKSGSEWEKKLDSFWQGRLNGQDPLEVMAAKEKIEAAAVEVLDPYIRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELALEQTSKLREDLYTQNYMNDPDAPGGKPVMQQPQKDNKPLNRRLGMEGRLRDDRGNRRDHEWNDRINDXDRPDSPSRERQSKPLEMGNNDETMYDAYAGPGVPPFSSDMPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSSYDASGRNMRSGPHIGGPAPIIAVPPAFRPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXK8</accession>
    <name>A0A392MXK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine/threonine protein kinase SRPK1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0012975</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021755">
        <property type="protein sequence ID" value="MCH92043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="27"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="219"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="97"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="346" mass="40153" checksum="227F8AC7B9926755" modified="2018-12-05" version="1" fragment="single">QWSRRNFRSNGSRNSGYKDKNDDQKNCFHCKKPGHFIADCPEMSSKDRLKRNSSKKDHFKNRIKKSLMATWEDLDNLSDEDVEEDEANLALMASTESEAETNSEVESESDSENADEHELALQEFVHSNVNKSKVASMIYSVCRNNKEGLGYTYGKSYGQSSSSECLSKSPPPLYYTFVPESAHAKAKRFSEERVLRTSGLSNQQLRCWVWKESEPKTVQSKALKHSEPNTSESQPLKLSKPQIIYDSRTRRYNQPKQMYGNQQRFWNNKQSKLWVKNSYQSKQYFQKRNYSNPRGAPKVYQRNNVFKTNQIGPIGKWVPKSEIVYHSDLHAMKGYRICDECAEVRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N095</accession>
    <name>A0A392N095_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013529</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023005">
        <property type="protein sequence ID" value="MCH92589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N095"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF48">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="89"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20550" checksum="C7AEBA18EA763F51" modified="2018-12-05" version="1" fragment="single">VSELIFAVLQRLNVDEAALMVCIIWSIWKQRNNRVWNDVTDTQSVVFSRVVTTLNDWRAVQVMRTETREIHGNMEHKWKKHNNGRVKCNIDASFSSNLNRVGIGVCIHDEYGVYVMAKYDQYSPICDVRISEALGLLSALKWVYKLNLGPVDFELDSKLVVDSFHSNKDDVSEFGEIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0J1</accession>
    <name>A0A392N0J1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024177">
        <property type="protein sequence ID" value="MCH93102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0J1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="69"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="267" mass="30960" checksum="529C3A73E9A60F6F" modified="2018-12-05" version="1" fragment="single">MNTDSDELTPRIIRKPSYLDDFVTGDEIDQLQNLAMFSTSDDPVTYDEAVKYDMWTKAKDQEIQGIEKNDTWELVTLSEGAKKIGVKWIYKTKYNEKGEIEKYKARLVAKCYSQQHGIDYNEIFAPVARWDSIRTILAIAASQNWPVHQLNVISAFLHEKLTENVYVEQPKGYQKVGDKVYKLKKALYGLKQAPRAWYSKIESYFGQDNFNKCPHEHTLFVKQDGSKILIVSLYVDDLIYTGNNIDKFESFKNSMKKKFAMTDLGQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1T7</accession>
    <name>A0A392N1T7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0014505</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010025217">
        <property type="protein sequence ID" value="MCH93553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1T7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048544">
        <property type="term" value="P:recognition of pollen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01098">
        <property type="entry name" value="PAN_AP_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.4.10:FF:000002">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.90.10.10">
        <property type="entry name" value="Bulb-type lectin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001480">
        <property type="entry name" value="Bulb-type_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000858">
        <property type="entry name" value="S_locus_glycoprot_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444:SF183">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444">
        <property type="entry name" value="BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01453">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08276">
        <property type="entry name" value="PAN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00954">
        <property type="entry name" value="S_locus_glycop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00473">
        <property type="entry name" value="PAN_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50927">
        <property type="entry name" value="BULB_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="13" id="KW-0430">Lectin</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Bulb-type lectin" evidence="11">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="10">
        <location>
            <begin position="188"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Apple" evidence="12">
        <location>
            <begin position="244"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH93553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="331" mass="38189" checksum="29CE68E4C076CEEF" modified="2018-12-05" version="1" fragment="single">MVLNGTNTIVWSSNVTTKEVNNPIARVLDSGNLVVQNRNDSKEERFLWQSFDYLCDTLLLNGMKLGWDLVTGHEIFLSSWKNNDDPSKGEYSLRIYRKGYPQLFKFKGLERKFRIGSWNGVGLSGYPTPLLKQLHRFKFVFDEKQVYIESEVLDRSIMVIYRLTPLGRGQLSVWRSKTRNWKVISTGEEDECENYALCGTYSICIMDGNVPTCECMKGYVPKFPKQWNISYWSNGCVPKNKSNCENSYKDGFLRYSKMKLPDTSSSWFSKIMDLDECRNSCLENCSCSGYANLDIRNGGSGCLLWFDELVDVRKFSQWGQDLYVRVPASQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N487</accession>
    <name>A0A392N487_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014252</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010024632">
        <property type="protein sequence ID" value="MCH93304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N487"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049163">
        <property type="entry name" value="Pif1-like_2B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21530">
        <property type="entry name" value="Pif1_2B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like 2B" evidence="3">
        <location>
            <begin position="261"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF21530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="337" mass="37160" checksum="BC97C2C120F0A64D" modified="2018-12-05" version="1" fragment="single">GIAALLLPGGRTAHSTFGIPLEINEESTCGFTKDSVRANLLRETKLIIWDEAPMMNRLCFECFNKAMQDIMSKIDPQAEFKPFGGVTVVLGGDFRQILPVIRKGNRTDIVSSTINASPIWRHCRVLRLTVNMRLGSSSIPAEQEEIRSFAKWILSIGDGDKEANEYGESVVEIPEDLVIKDSVDPLSSLVNFAYPDLLLNINNPDYFNERGILAPTLDAVEQVNEYVMSMIPGEEKEYLSYDSVCRSDANSEIEGDWFTPEFLNDIKCSGIPNHKLKVKVGCPVMLMRNVDQSAGLCNGTRLIVTDLGNRFIGGTVVTGKNAGDKSQVTKGSKVAHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N570</accession>
    <name>A0A392N570_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA-binding protein 25-like</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015084</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026567">
        <property type="protein sequence ID" value="MCH94128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="71" mass="7946" checksum="A05CDB8D72063CE0" modified="2018-12-05" version="1" fragment="single">FQGXYRQRESSRHGGFMEGNGFVKFLKVRDVDKLCKALNNVYFRDQQLFANVAKFDRFGSVVGGGGIKGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5S1</accession>
    <name>A0A392N5S1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025901">
        <property type="protein sequence ID" value="MCH93844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="181"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="379" mass="43394" checksum="A0FEF50BD2A650D8" modified="2018-12-05" version="1" fragment="single">DHKSLKHFLQQRISSPDQQCWLAKLLGYQFEVKYKPGSDNKAADALSRCYGDVELNSIVSYPKWLEGQKLLQEAQQDLEIQKIIAELLASPDAKPGFTIHEGTLFYHGRLVLSPTSPSIPLLLQEFHSTPTGGHSGYLRTYRRLAENLYWVGMQKQVRNFVRACDTCQRQKYAATSPGGLLQPLPIPNAVWEDLSLDFITGLPKSKGYAAVLVVVDRLSKYSHFILLKHPYTAKSIAELFVKEIVRLHGVPTSIISDRDPLFVSHFWMELFKLQAKNMVLLXPETDEQTEVLNRCLESYLRCFASEQPRTWSYWIPWAEYWYNTTFHISIGKTPFEVVYGRPPPSLLRFLSNETKVAAVALELSDRDEALNQLKSHLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N964</accession>
    <name>A0A392N964_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032133">
        <property type="protein sequence ID" value="MCH96357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N964"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10223" checksum="1D57B5DAE0222501" modified="2018-12-05" version="1" fragment="single">RGNCSWAGAGGGEGGGDGVGGGVGSRAPLLFLDLTEVVPDEEPPSSPFPCLDFLKGFFMVVSGFGEIFVGFYRVKLGDVNFEMVKLKDARWNMVME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N970</accession>
    <name>A0A392N970_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015966</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028675">
        <property type="protein sequence ID" value="MCH94994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N970"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="78"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="294" mass="33459" checksum="519374E370695704" modified="2018-12-05" version="1">MTPRFNYVVCSIEESNDVTSLSIDELQSNLIVHEQGMRGQQEIREEQALKISNGGRGSSSGRGRGRWRGRQSKETVECYRCHKLGHYQNECPSCVDNVNYTEFNDEEETLLMARTEQEHEIREETWYLDSGCSNHMIGNKDWLFEFDSSFKDSVKLGNDTKMAVMGKGNVKLFINGKVHVITNVYYLPGLSTNLLSVGQLQERNVTIVFKNDACKGYHDEKGLIFSTQMTANRMFLIIAPVIIPMCLQTSKQEKTQLWHNRYGHLSVNGLKLLTKLNMVNGLPELGDMEGKCTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAE9</accession>
    <name>A0A392NAE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0017790</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033285">
        <property type="protein sequence ID" value="MCH96800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338:SF32">
        <property type="entry name" value="OS06G0287500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19338">
        <property type="entry name" value="TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="5">
        <location>
            <begin position="5"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="157"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23683" checksum="45D29190A1CE771B" modified="2018-12-05" version="1" fragment="single">MAEMAVTLVVEKLVPLLREEAKLLGGIHKEFEDIKKELQSIQAFLKDADKKAEGDNTDEGVKIWVREVREAAFRIEDVIDDXXXXXXXXXXXQQPRDPGCIALLRKIAHSLKILTPRHQIASEIQDIKSLVREIRERRERYQFQASTEQRSRSFRGNKNDKWHDPRRDAEYIDEAEMVGFEEPKNELVGWLLEGRSERTVIVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAK8</accession>
    <name>A0A392NAK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017701</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033029">
        <property type="protein sequence ID" value="MCH96712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050628">
        <property type="entry name" value="SNF2_RAD54_helicase_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626:SF45">
        <property type="entry name" value="DNA REPAIR PROTEIN RAD5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626">
        <property type="entry name" value="TRANSCRIPTION TERMINATION FACTOR 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8536" checksum="24826EBCFE5FE9EB" modified="2018-12-05" version="1" fragment="single">DPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAV3</accession>
    <name>A0A392NAV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017968</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033789">
        <property type="protein sequence ID" value="MCH96976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF489">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22913" checksum="B429C1F394D58937" modified="2018-12-05" version="1">MTRPDIAYTINKLAQFMQHPSSIHFTALKRLLRYLKATIFHGLHLKRSSSNTLYAFSDADWAGNRDDYTSTSAHVTFYGGNPISWKSFKQKAVARSSTEAEYRALASAPAEILWLSSLLSELHVSVPTVPTIYCDNLSATYLTVNPVFHSRMKHIAIDIHFVRDQVRNNKIRVQHVSTKDQLANCLTKPLXXXXXXXXDRCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCI0</accession>
    <name>A0A392NCI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isoflavonoid malonyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018561</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035284">
        <property type="protein sequence ID" value="MCH97566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.559.10:FF:000046">
        <property type="entry name" value="Phenolic glucoside malonyltransferase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051504">
        <property type="entry name" value="Plant_metabolite_acyltrans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31625">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02458">
        <property type="entry name" value="Transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="28121" checksum="EE95BD98E2FE2FEC" modified="2018-12-05" version="1">MAFNNNIKIHEQFKVVPPSSIQTTTLPLTFFDIFWLKFHPVERIFFYTLPNSQSHPTFFFQKLVPILKSSLSLTLQHFLPLAGKIVWPSESPQPIVQYTPNDGVSLLIAESDADFDRVIEKSPHEASLSRSLIPHLESIDSFASIISIQVTLFPNSGVSIGISAHHAILDGKSSTMFIKAWAYLCKKTIETEEESPTLLPELEPSFNREIIKDPNQLGVTFTNNWIEIISKMFPNEEAKQKKLEDFCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEU1</accession>
    <name>A0A392NEU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">26S proteasome non-ATPase regulatory subunit 2 A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019379</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037436">
        <property type="protein sequence ID" value="MCH98377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008540">
        <property type="term" value="C:proteasome regulatory particle, base subcomplex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034515">
        <property type="term" value="C:proteasome storage granule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040892">
        <property type="entry name" value="RPN1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10943">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10943:SF1">
        <property type="entry name" value="26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17781">
        <property type="entry name" value="RPN1_RPN2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="RPN1 N-terminal" evidence="2">
        <location>
            <begin position="6"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9574" checksum="058DF985CCB0CA62" modified="2018-12-05" version="1" fragment="single">MFSFDVRNLAGEIAQEYAKRQSEEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDMLIEHVDKTNFKRTCLYLTSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFM4</accession>
    <name>A0A392NFM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ethylene-responsive transcription factor 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0019142</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">10/8</strain>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036837">
        <property type="protein sequence ID" value="MCH98143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010090398">
        <property type="protein sequence ID" value="MCI13970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009877">
        <property type="term" value="P:nodulation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.730.10:FF:000005">
        <property type="entry name" value="ethylene-responsive transcription factor RAP2-11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050913">
        <property type="entry name" value="AP2/ERF_ERF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31194:SF186">
        <property type="entry name" value="AP2 DOMAIN CLASS TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31194">
        <property type="entry name" value="SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0536">Nodulation</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="9">
        <location>
            <begin position="22"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="8">
        <location>
            <begin position="11"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH98143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="15608" checksum="385AEE72059F67D4" modified="2018-12-05" version="1" fragment="single">MVAPVSDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFGLPESGTNGGVGAKRGSGSNFMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLFDGKEAKFSFSFPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHB8</accession>
    <name>A0A392NHB8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-dependent Clp protease proteolytic subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0020183</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039577">
        <property type="protein sequence ID" value="MCH99172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009368">
        <property type="term" value="C:endopeptidase Clp complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009532">
        <property type="term" value="C:plastid stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051117">
        <property type="term" value="F:ATPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381:SF55">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH99172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17476" checksum="6177A7CAF6537A2C" modified="2018-12-05" version="1">MDNNGSSKYSMRVSMYRGRGRGGRRRRAPPDLPSLLLDARICFLGMPIVPAVTELIVAQLMWLDYDNPSKPIYLYINSSGTQNAKKENVGSETDAYSIADMISHVKSDVYTINLSMAFGQAAMLLAIGKKGYRAVLPNSSSWTWRNQFQMFRDWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHX0</accession>
    <name>A0A392NHX0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase-like plant mobile domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038600">
        <property type="protein sequence ID" value="MCH98819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010073">
        <property type="term" value="P:meristem maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044824">
        <property type="entry name" value="MAIN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033:SF1">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="1">
        <location>
            <begin position="1"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="287" mass="32582" checksum="11AE3A6DE5553CB6" modified="2018-12-05" version="1" fragment="single">MMTPTLLDVAAITGLRPTGGAYDPANANKKISLVINKEAYSKYVAEQQGQEGDEVTDVEHVAFLTLWLSHFVFCSKSLQVAKRFVPMAIQIQEGCQFGLGRLILACLYEAIGSASDELKKSKDGSMFLCYGPLWLLQLWLNATFEKEMGLTIGKNYLPEIENFQIEATKLARLSPPIWQDSKTLFMKYVKIFLKFDKLTKRNTPFIDRKVGPTWFREDFPATNPDNEDEVNEIWHAYLNPTVLTCRIGPFLSDLGLVGYQPNLVSRQFGFSQMRPRSLFEVTKNICL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJF0</accession>
    <name>A0A392NJF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Coatomer subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0020565</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040625">
        <property type="protein sequence ID" value="MCH99551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030117">
        <property type="term" value="C:membrane coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22948">
        <property type="entry name" value="Coatomer_WDAD_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.470:FF:000002">
        <property type="entry name" value="Coatomer subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006692">
        <property type="entry name" value="Beta-prop_COPA/B_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047312">
        <property type="entry name" value="Coatomer_alpha_WD-assoc_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056176">
        <property type="entry name" value="TPR_COPA_B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04053">
        <property type="entry name" value="B-prop_COPA_B_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23953">
        <property type="entry name" value="TPR_COPA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="9" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <keyword evidence="5" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="COPA/B second beta-propeller" evidence="11">
        <location>
            <begin position="3"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="COPA/B TPR" evidence="12">
        <location>
            <begin position="150"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF23953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH99551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="328" mass="36982" checksum="4F47BFCD70FD75BF" modified="2018-12-05" version="1" fragment="single">AAHLLCRSEDRVVVFELQQRVVEGDLQTPFIKYVVWSNDMAHVALLSKHAIIIASKTLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDNGIIKTLDVPIYITKVSGNIIFCLDRDGKSRVITIDATEYIFKLSLFKKKYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDEKIRFNLALESGNIQIAVASATAIDEKDYWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNLEKLSKMLKIAEVKNDVMGQFHNALYMGDVRERVKVLENVGHLPLAYVAASVHGLHDVAERLAAELGDNVPSLPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKP9</accession>
    <name>A0A392NKP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Vacuolar protein sorting-associated protein 16</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041921">
        <property type="protein sequence ID" value="MCH99991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030897">
        <property type="term" value="C:HOPS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016197">
        <property type="term" value="P:endosomal transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042144">
        <property type="term" value="P:vacuole fusion, non-autophagic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016534">
        <property type="entry name" value="VPS16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006926">
        <property type="entry name" value="Vps16_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12811">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING VPS16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12811:SF0">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04841">
        <property type="entry name" value="Vps16_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vps16 N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14299" checksum="B04DDAAD9C34AB97" modified="2018-12-05" version="1" fragment="single">ADENLRLIRSSLPEAVEACVDAAGHEFDVLRQRTLLRAASYGQAFCSNFHRDRIQEMCKILRVLNAVRSLEIGIPLSIQQYKLLTPSVLIGRLINAHQHLLALRISEYLGMNQKYVRNPRIGFQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKR4</accession>
    <name>A0A392NKR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021497</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043335">
        <property type="protein sequence ID" value="MCI00478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="7015" checksum="5C01479FD1D18214" modified="2018-12-05" version="1" fragment="single">MDDQDLHYPVVRYWRLTTIDIQRSRSARLELTANFIFFRVNPPMFVFDIEVVGHCQVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL65</accession>
    <name>A0A392NL65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Xylosyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0020225</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">10/8</strain>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039700">
        <property type="protein sequence ID" value="MCH99214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010058375">
        <property type="protein sequence ID" value="MCI05341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015020">
        <property type="term" value="F:glucuronosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044610">
        <property type="entry name" value="GLCAT14A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719:SF3">
        <property type="entry name" value="BETA-GLUCURONOSYLTRANSFERASE GLCAT14A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH99214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="19320" checksum="5B177AEBB5A2B38E" modified="2018-12-05" version="1" fragment="single">SAWMVLSRPFVDYVIWGWDNLPRTVLMYYSNFISSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLTVADMKVMVDSNAPFARKFHRDDPVLDKIDSELLSRSPGMPVPGGWCIGSNENGTDPCSVVGNTTVLRPDNGSKRLETLISKLLSTENFRPRQCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM40</accession>
    <name>A0A392NM40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021971</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044757">
        <property type="protein sequence ID" value="MCI00947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6424" checksum="5582DEE484A55723" modified="2018-12-05" version="1" fragment="single">TRSGGLTRAFSAPLSLLFTGVPLLRSFSDSRRHSPFAGCEAWVSVWVLGKSLLSASEKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NP46</accession>
    <name>A0A392NP46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0022705</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046799">
        <property type="protein sequence ID" value="MCI01678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NP46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.630.10:FF:000126">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47943:SF2">
        <property type="entry name" value="CYTOCHROME P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47943">
        <property type="entry name" value="CYTOCHROME P450 93A3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10 11" id="KW-0349">Heme</keyword>
    <keyword evidence="7 10 11" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 10 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="6 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="10">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI01678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="24118" checksum="85F7C2456EE51EBF" modified="2018-12-05" version="1">MIVAAIDTSATVIEWALSELLRHPRVMKILQDEIQNEIGNKRMVEEKDLKMLNYLDMVVDETLRLYPVGPLLDPRECRESITINGYFIKEKTRVIVNAWAIGRDSNVWSENAEEFYPERFIGKKMNYHGQEFECIPFGSGRRRCPGIQLGLITIKLVLAQFVHCFNWKLPCNIDPSNLNMEEKFGLTIPRAHPLHAIPTYRLASDANDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPC3</accession>
    <name>A0A392NPC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative aarF domain-containing protein kinase chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046954">
        <property type="protein sequence ID" value="MCI01738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12180" checksum="FF519E83B0F8128D" modified="2018-12-05" version="1" fragment="single">MQVIVRKRVNVVSAVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFTKRWDRQSQAFYNLFRQADREQGDLKLRVRTLESERAFQRVATVQKTIGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPW1</accession>
    <name>A0A392NPW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin-associated domain-containing protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022449</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046107">
        <property type="protein sequence ID" value="MCI01424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8220" checksum="26D0D782A468F4C2" modified="2018-12-05" version="1" fragment="single">MLQMPRRGGVKSPHWMKSGLKMNPSATLVTPGPYGLIFASFVPFFFDIPVSTRFRMFGFNFSDKSIIYVAGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT66</accession>
    <name>A0A392NT66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Auxin transport protein BIG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0023318</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048634">
        <property type="protein sequence ID" value="MCI02286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009926">
        <property type="term" value="P:auxin polar transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045189">
        <property type="entry name" value="UBR4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003126">
        <property type="entry name" value="Znf_UBR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02207">
        <property type="entry name" value="zf-UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00396">
        <property type="entry name" value="ZnF_UBR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51157">
        <property type="entry name" value="ZF_UBR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="UBR-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="UBR-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI02286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="308" mass="34095" checksum="D2C699CC471EA260" modified="2018-12-05" version="1" fragment="single">MEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSNCQCLKPRKFTVDNSAPVRGSNTFQSFLPFPEDGDQLPDSDSDFEEDINSDVDNSLRLCITKELQEGIPLLLEELDVESQVLNLCSSLMPSVISRRDSHHSKDKKISLGEDKVISHCIDLLQLKKAYKSGSFDLKIKVDYSNAKDLKSHLANGSLVKSLLSVSLRGRLAVGEGDKVAIYDVGQLIGQATISPVTADKTNVKHLSKNVVRFEILQLAFNPVVENYLVVAGYEDCQVLTLNPRGEVIDRLAIELALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NW67</accession>
    <name>A0A392NW67_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Farnesylcysteine lyase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0024734</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052979">
        <property type="protein sequence ID" value="MCI03694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NW67"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001735">
        <property type="term" value="F:prenylcysteine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030327">
        <property type="term" value="P:prenylated protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030328">
        <property type="term" value="P:prenylcysteine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010795">
        <property type="entry name" value="Prenylcys_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017046">
        <property type="entry name" value="Prenylcysteine_Oxase1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15944">
        <property type="entry name" value="FARNESYLCYSTEINE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15944:SF0">
        <property type="entry name" value="PRENYLCYSTEINE LYASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07156">
        <property type="entry name" value="Prenylcys_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prenylcysteine lyase" evidence="6">
        <location>
            <begin position="4"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI03694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10053" checksum="851D07ADEE249CD1" modified="2018-12-05" version="1" fragment="single">VRKETIRINWAAYPQYHAPEIFAPFILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRYFGKVSVHSSNLNLKASSQEEDAHLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P878</accession>
    <name>A0A392P878_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cinnamyl alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0029407</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068668">
        <property type="protein sequence ID" value="MCI08331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050425">
        <property type="entry name" value="NAD(P)_dehydrat-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366:SF852">
        <property type="entry name" value="CINNAMOYL-COA REDUCTASE CAD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366">
        <property type="entry name" value="NAD DEPENDENT EPIMERASE/DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-binding" evidence="3">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI08331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7300" checksum="C62C93C156D96B51" modified="2018-12-05" version="1" fragment="single">MSGEGKVVCVTGAXGFIASWIVKFLLQRGYTVRGTVRNPKKVDHLLKLDGAKERLQLFKADLLEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8P2</accession>
    <name>A0A392P8P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lysine-specific demethylase 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0029568</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069214">
        <property type="protein sequence ID" value="MCI08491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8P2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041667">
        <property type="entry name" value="Cupin_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13621">
        <property type="entry name" value="Cupin_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cupin-like" evidence="2">
        <location>
            <begin position="25"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7887" checksum="88081F8655AB7DD9" modified="2018-12-05" version="1" fragment="single">VLQLLPVKSLASKLVVKRSALSLEKFLKDHYLSGTPVIISDCMAHWPAKKNWNNIDYLLRVAGDRTVPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAJ1</accession>
    <name>A0A392PAJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin carboxyl-terminal hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069235">
        <property type="protein sequence ID" value="MCI08499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAG-pre-integrase" evidence="1">
        <location>
            <begin position="54"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16128" checksum="834D14888883A874" modified="2018-12-05" version="1">MVGNKNWLYEFDGEYRDFVKLGDDSRMSVMGRGDLKLSINGRTHIITSVYYIPVSKASRSQLWHDRYAHLSIKGLNTLSKMNMVKGLPTLDDLEDKCADCLIGKQHRDSIPKQATWRASSKLELVHSDICGPINPMSNGGNSNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDW6</accession>
    <name>A0A392PDW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075682">
        <property type="protein sequence ID" value="MCI10298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3178" checksum="DB04EA649D34A5B0" modified="2018-12-05" version="1" fragment="single">GLLYGCVFAESVVGKAAPRPLLVAVHILRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE34</accession>
    <name>A0A392PE34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Equilibrative nucleotide transporter 8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0031103</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC29A/ENT transporter (TC 2.A.57) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074709">
        <property type="protein sequence ID" value="MCI10012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005337">
        <property type="term" value="F:nucleoside transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002259">
        <property type="entry name" value="Eqnu_transpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOSIDE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332:SF77">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI10012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9591" checksum="4E0D92EB6FA3D784" modified="2018-12-05" version="1" fragment="single">MEAVKLVSSDPTETRDAYRVAYIIHFLLGAGNLLPWNAFITAVDYFAYLYPTKHIEKVFSVAYMVSSVLVLLVMISWGGWSKTTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFA1</accession>
    <name>A0A392PFA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031873</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077572">
        <property type="protein sequence ID" value="MCI10778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005227">
        <property type="term" value="F:calcium-activated cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045122">
        <property type="entry name" value="Csc1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003864">
        <property type="entry name" value="CSC1/OSCA1-like_7TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13018:SF96">
        <property type="entry name" value="OS05G0393800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13018">
        <property type="entry name" value="PROBABLE MEMBRANE PROTEIN DUF221-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02714">
        <property type="entry name" value="RSN1_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="CSC1/OSCA1-like 7TM region" evidence="2">
        <location>
            <begin position="2"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9105" checksum="BEC22F6A8A756A4B" modified="2018-12-05" version="1" fragment="single">PSVKSVIQGFLPGLALKIFLIMLPKLIMAMSKMEGYTSFSSLERRSASKYYLFVLVNVFLGSIVTGTAFQQLEQLINQPSSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PN39</accession>
    <name>A0A392PN39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Vacuolar protein sorting-associated protein VTA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0033419</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083708">
        <property type="protein sequence ID" value="MCI12315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005771">
        <property type="term" value="C:multivesicular body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032511">
        <property type="term" value="P:late endosome to vacuole transport via multivesicular body sorting pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.420">
        <property type="entry name" value="Immunoglobulin FC, subunit C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044538">
        <property type="entry name" value="Vta1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041212">
        <property type="entry name" value="Vta1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46009">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46009:SF1">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18097">
        <property type="entry name" value="Vta1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Vta1 C-terminal" evidence="2">
        <location>
            <begin position="195"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="161"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="182"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="237" mass="26122" checksum="479DE873AB2DFFAC" modified="2018-12-05" version="1" fragment="single">YTPGGYPSQDYHPPPSSQDYHHPPPSHDYHSSAPSQDYHPPPPSQDYHPPPPSQDYHPPPPSQDYQPPPPSQDYHHPPPARSDSSYSEHYNHPQYSPDQSQNLGPNYPSHETPAPYSLPHFQSYPSFTESSLPSVPVNHTYYQAPDASFSSQSAPLTTNHSSSAQXSSSXRNGTASEPKPTXQSYQYDSSYQPAPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFL5</accession>
    <name>A0A392RFL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0056582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222601">
        <property type="protein sequence ID" value="MCI35361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3423" checksum="57078C1C22995885" modified="2018-12-05" version="1" fragment="single">MVVARTNAQIAGALATLANIVARDNDPARDGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URU0</accession>
    <name>A0A392URU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010953093">
        <property type="protein sequence ID" value="MCI78547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="14"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3068" checksum="E512E4D94BE87262" modified="2018-12-05" version="1" fragment="single">PTPREGRRTLPWDSSVIVPSSSSEENAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTN5</accession>
    <name>A0A392UTN5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099629</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010949119">
        <property type="protein sequence ID" value="MCI78359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7433" checksum="3012764E853AE96B" modified="2018-12-05" version="1" fragment="single">KHFWDHPDFLVVKQNLVELKRSLVEYSEFQPDSAEPECTQRANHRVAMLYSEQRILLGMSEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUU8</accession>
    <name>A0A392UUU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010958686">
        <property type="protein sequence ID" value="MCI78769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3646" checksum="A2025AD3757031B1" modified="2018-12-05" version="1" fragment="single">MTPSRNAKSVERTLKRQTFRLLSPRAWASEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV60</accession>
    <name>A0A392UV60_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA/RNA polymerase superfamily protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010979988">
        <property type="protein sequence ID" value="MCI79717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8647" checksum="B4F3C19B65F7CF24" modified="2018-12-05" version="1" fragment="single">MLKLTNPFLEEIKECQKRDQKLMEKLELIREEKETDFGVDENGVVRYSGRVCVPDVPELRKMILEEGHRSGLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV72</accession>
    <name>A0A392UV72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100293</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964295">
        <property type="protein sequence ID" value="MCI79022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7543" checksum="1D0BB3F2C2ED335E" modified="2018-12-05" version="1" fragment="single">METIMAALVNEINRQGDLIREQNQRLISQSQRLQAVEESRVTRLTRSGHPRRSPTPERSRSITRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWW3</accession>
    <name>A0A392UWW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010956071">
        <property type="protein sequence ID" value="MCI78670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5779" checksum="1070D4A9CEBC82B1" modified="2018-12-05" version="1" fragment="single">RWWLWVLGVRGVHCSDGGGGGDVVFGADVVVFGSCAGVRLMPRVNDFLRYLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWJ0</accession>
    <name>A0A392LWJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative RING/FYVE/PHD zinc finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0000075</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000041">
        <property type="protein sequence ID" value="MCH79327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140566">
        <property type="term" value="F:histone reader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034244">
        <property type="term" value="P:negative regulation of transcription elongation by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056280">
        <property type="entry name" value="AIPP2-like_SPOC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049914">
        <property type="entry name" value="PHD1-3/5-6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33304">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33304:SF36">
        <property type="entry name" value="GB|AAF26970.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23121">
        <property type="entry name" value="SPOC_AIPP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="AIPP2-like SPOC-like" evidence="7">
        <location>
            <begin position="172"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="31"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="46"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF23121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH79327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="372" mass="41838" checksum="CE9FAFC96BA2DDEC" modified="2018-12-05" version="1" fragment="single">SVDATLSTHAFARREKTAKLREEWGHWQRQVDSQVEEAKVDRDADMDVGDGEEAEADDGGMSVDATEGMFPGPEPIEFSEGPSNKGHDHHASPIALATHDKFARSGVQKNRMTDQHASPIAPLAQGNIPTNGVQKNIITDEQASLLKGQTERHIPEIFYQNFRYLPAEIRAWSGQFQILQGDASGEFYDGFVAQPPCIVSRKAYIFSKKLPSVLQLESLSALNVLKDVYQDYPPTIQDLALYFFPLDNNERSKNNLNSLIKFMDDKNLMLRSFVDEVELMVFTSNKLDENSRGTIAVVYEGDFLWGTFRPNKTDIASKRLSDIDTIDTMGGNDTEVQEEIGQDIALTQDKLIEDLGPRVRRPPKWLINYVQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX84</accession>
    <name>A0A392LX84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000194">
        <property type="protein sequence ID" value="MCH79560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5304" checksum="8DE5BEDC80CFC61F" modified="2018-12-05" version="1">MSERENQLSGSVMVAAAATVVMGSGEDESMSSERSEGFEMRNEGEDERC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYB8</accession>
    <name>A0A392LYB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipoxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000537">
        <property type="protein sequence ID" value="MCH79961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6152" checksum="08D74FBAD5AE90AA" modified="2018-12-05" version="1" fragment="single">MSIIDRGHKLKGIVVLMHKNALDFNDVGDAADNEGDTVPPSFLDTSVALKLISASKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYS1</accession>
    <name>A0A392LYS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000904</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000728">
        <property type="protein sequence ID" value="MCH80142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF18">
        <property type="entry name" value="RX N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="2">
        <location>
            <begin position="2"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="3">
        <location>
            <begin position="249"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="895" mass="101563" checksum="4A262782A509CDC4" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ01</accession>
    <name>A0A392LZ01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000812">
        <property type="protein sequence ID" value="MCH80230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11858" checksum="345171463E42BED6" modified="2018-12-05" version="1">MLSCVFNDTAREASITGKVNSWYFEFIDDITSSAMKRANDYAIRSVLEEELFQRFEEKSIFPRTSKHVCLRYFNVFRSVEGVVRMVDVAPCEANTLAVYIIGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0M7</accession>
    <name>A0A392M0M7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001532">
        <property type="protein sequence ID" value="MCH80821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0M7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="125"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="73"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="88"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17367" checksum="70E1BAFC6264435A" modified="2018-12-05" version="1">MSRPGPLTRSRAIAAIQQGEPSSLHNVEIVLEPVNTQHSRQAPQFATQTSIPVNNIFSSIHASLSPDRDHQTPPLQNNQPQNLAGNHIPNQTRRTSQEQQANDMFSTMFTLLQQQAARLSYVEQNQQNAPHTVNNHVRIPTMPNRSKRSTNGSHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0V6</accession>
    <name>A0A392M0V6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0001645</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="8"/>
    <dbReference type="EMBL" id="LXQA010001586">
        <property type="protein sequence ID" value="MCH80869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0V6"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009051">
        <property type="term" value="P:pentose-phosphate shunt, oxidative branch"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.360.10:FF:000018">
        <property type="entry name" value="Glucose-6-phosphate 1-dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019796">
        <property type="entry name" value="G6P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429:SF13">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00069">
        <property type="entry name" value="G6P_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 8" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="4 8" id="KW-0521">NADP</keyword>
    <keyword evidence="5 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucose-6-phosphate dehydrogenase NAD-binding" evidence="9">
        <location>
            <begin position="5"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Glucose-6-phosphate dehydrogenase C-terminal" evidence="10">
        <location>
            <begin position="122"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH80869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="376" mass="43015" checksum="ED35E7F3CEFF1AD8" modified="2018-12-05" version="1" fragment="single">ANCADKMDQFLKRCFYHSGLYDSEDNFLDLDSKLKGREGGRPSNRLFYLSIPPNIFVDVVRCASLKASSKNGWTRVIVEKPFGRDSESSSELTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLVQILALFAMEPPVSLDAEDIRNEKVKVLRSMKPILLEDVVVGQYKGHSKGGKSYPAYIDDSTVPKGSLTPTFAAAALFIGNARWDGVPFLMKAGKALHTKRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYRSRYPREIPDAYERLLLDAIEGERRLFIRSDELDAAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0Z7</accession>
    <name>A0A392M0Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein LONGIFOLIA 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001785</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001757">
        <property type="protein sequence ID" value="MCH81007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051513">
        <property type="term" value="P:regulation of monopolar cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032795">
        <property type="entry name" value="DUF3741-assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025486">
        <property type="entry name" value="DUF4378"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033334">
        <property type="entry name" value="LNG1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31680">
        <property type="entry name" value="LONGIFOLIA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31680:SF4">
        <property type="entry name" value="LONGIFOLIA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14309">
        <property type="entry name" value="DUF4378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14383">
        <property type="entry name" value="VARLMGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3741" evidence="3">
        <location>
            <begin position="137"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4378" evidence="2">
        <location>
            <begin position="701"/>
            <end position="882"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="306"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="402"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="595"/>
            <end position="659"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="327"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="412"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="434"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="447"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="507"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="624"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="892"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="892" mass="99851" checksum="133AF04DF472FF05" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M226</accession>
    <name>A0A392M226_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/RNI/FBD-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002168">
        <property type="protein sequence ID" value="MCH81331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M226"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006566">
        <property type="entry name" value="FBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF30">
        <property type="entry name" value="SUPERFAMILY PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08387">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00579">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FBD" evidence="1">
        <location>
            <begin position="207"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="32223" checksum="049D8B698CDA6DDC" modified="2018-12-05" version="1">MKVQHASVNFPSLKTLKLDIDIMDSQVAFLSGCPMLETLHIHFVPETLTKFPVPLSSKRLKFTDGNFSWTCLEIGSDWLDSKNYISVAKLGIIGNLERGVEAYLDVFYPCEGEFVDPIVQILIDDYYDLHLLLRHSKSKWPLPSPVLNYPEFCNLHYLKFILPCFNSNLLINVLGKCHMLLVLIIQSKKEEPPPLRTWEPQLTTVPKCLQSHLIYIRIEGYQGSEDELAFAEYILWNGLVLKTMLIFVDISMNITNKYHSLKRLTNIPKGSETCQLKFDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M244</accession>
    <name>A0A392M244_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001862</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001862">
        <property type="protein sequence ID" value="MCH81083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M244"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="30"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="405" mass="44704" checksum="B7F3D52907608E96" modified="2018-12-05" version="1">MEGSVNMEGLTFTHEEGGVTVNLAQHQAVNEILDHCLVGKFLADRPVRTHIMKERLANLCRPVKGVMITPIESNRFLFQFFHNLDMGRVISDGPWSFDNFMLALRKVYPGEDPLTVPLNIVEMWVQIHNLPYGFMCKAIGELIGSYLGNFLEYDEDNNWGPWRKYMRIKVALDVNVPLKKDWAIRKDGGDWVKVMFKCKRLGKLLKSEPGRNGGATVNRWLRDGRGLAGETAINGNNVQRETAATVQTEGQSSILVNKVINGALIVPNSTVGTQLRSPKSGTVMVRSASGVIMRAPNTSSEILLPSPRPTINLNQKIMSGESNGSNNMNASAIIQPAANDTTNNAPKKRFRAEEEGPGQVTEVMKIDEASATKGHTGNDVHMLTDPLFTENIVMAGPVDQACHQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2I0</accession>
    <name>A0A392M2I0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002299</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002390">
        <property type="protein sequence ID" value="MCH81510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2I0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9233" checksum="AC2C5E490D191C82" modified="2018-12-05" version="1">MTVNLHLLDEVREAAHLREITVKRRAARKYDSRLIPKELKEGDLVLKRPMGRDKGGKLAPIGKDLFASTKSSQVELTGWRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2Y9</accession>
    <name>A0A392M2Y9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Small subunit processome component 20-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001762</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001728">
        <property type="protein sequence ID" value="MCH80984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2Y9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052575">
        <property type="entry name" value="SSU_processome_comp_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046523">
        <property type="entry name" value="UTP20_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17695">
        <property type="entry name" value="SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17695:SF11">
        <property type="entry name" value="SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20416">
        <property type="entry name" value="UTP20"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="U3 small nucleolar RNA-associated protein 20" evidence="1">
        <location>
            <begin position="117"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="U3 small nucleolar RNA-associated protein 20" evidence="1">
        <location>
            <begin position="195"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="635" mass="71594" checksum="102E9146B3D42C99" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3G5</accession>
    <name>A0A392M3G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002608</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002810">
        <property type="protein sequence ID" value="MCH81815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3G5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051222">
        <property type="entry name" value="PPR/CCM1_RNA-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47942:SF16">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT DOMAIN CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47942">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="44"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="130"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="383" mass="44118" checksum="840867CAF0D60A2B" modified="2018-12-05" version="1" fragment="single">FVTGNSESEQVVEKMMNPRGDCVTYNILIDDMSKTEDYPSPANRKATYTSRIKFLCRRNRIDEAYGVLNQMIVSGFSPSFATMNDVVRGFLRIGETTKAYNMRNEMNEHTGVSSWMYDDTQVSLYEGLSDEVTYTGLMNAYLDEGNWDNAIKLFYEMKRVPGLFYEMHCSHLLDNLPKSVIHSVFINGLDKKTRTTEIKKELLKFNYMMYELSTDRPILEYHRTLAENSSDDEFKILVELVQCFCSKSKGLDNLVDMFLNTNYKPDGIDDGIVYNLFIIIHRYFKNVDNAYNVYKEMVRSGFACHMFTVFALITTLKEKNMVNELLWVIQSILGSCNLNDSEMVKFCSEFNPKEPVTEALFEVLAEKAKDGLFLKCSYAPANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3H8</accession>
    <name>A0A392M3H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Metalloendoproteinase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0002373</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="9">Can bind about 5 Ca(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M10A family. Matrix metalloproteinases (MMPs) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002483">
        <property type="protein sequence ID" value="MCH81583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030574">
        <property type="term" value="P:collagen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030198">
        <property type="term" value="P:extracellular matrix organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.390.10:FF:000058">
        <property type="entry name" value="Metalloendoproteinase 5-MMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001818">
        <property type="entry name" value="Pept_M10_metallopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021190">
        <property type="entry name" value="Pept_M10A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021158">
        <property type="entry name" value="Pept_M10A_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201">
        <property type="entry name" value="MATRIX METALLOPROTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201:SF259">
        <property type="entry name" value="MATRIXIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00413">
        <property type="entry name" value="Peptidase_M10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00138">
        <property type="entry name" value="MATRIXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="PGBD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00546">
        <property type="entry name" value="CYSTEINE_SWITCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0732">Signal</keyword>
    <keyword evidence="6 9" id="KW-0862">Zinc</keyword>
    <keyword evidence="8" id="KW-0865">Zymogen</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017283821" evidence="10">
        <location>
            <begin position="22"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase metallopeptidase" evidence="11">
        <location>
            <begin position="171"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="binding site" description="in inhibited form" evidence="9">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR621190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH81583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="351" mass="39682" checksum="23B8256C775C61E3" modified="2018-12-05" version="1">MMNSHSYLLLLIIITINITLSISVRIPLASPALRQQIGKEIGGQTGQHVFQNVIQNVIDQIFNQGDRRSPPSPQVNEIRSPSPQVKEIQGLSLIKQYLYDFGYLQQSGTFDNFLDKDTISAIELYQQNFNLQATGDLNNQTLQQILLPRCGVPDINFEYNLTDTINASWPKGNKWFPEGTKNLTYGFAPESKIPLNATKVFRNALARWSTTTKVLNFTETSYNDANIKIGFYNYVDDGVKDIVVGDTIISLQLNSSVNSGVIRLDASKYWILPTDNYTGSWQDGEFDLETVVMHQIGHLLGLDHSFEKDSIMYPTILPSQQRKVQIAVSDNQNIHQLYTMLNILSLLLLLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3J2</accession>
    <name>A0A392M3J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ras-related protein RABA4d-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0002634</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Endomembrane system</location>
            <topology evidence="7">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002850">
        <property type="protein sequence ID" value="MCH81841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01868">
        <property type="entry name" value="Rab11_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000274">
        <property type="entry name" value="ras-related protein RABA5a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050209">
        <property type="entry name" value="Rab_GTPases_membrane_traffic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47979">
        <property type="entry name" value="DRAB11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00176">
        <property type="entry name" value="RAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51420">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0636">Prenylation</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00037868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH81841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="26017" checksum="02943EB7AF3EC0A2" modified="2018-12-05" version="1">MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNQFNVDSKATIGVEFQTKTLIIDNKTVKAQIWDTAGQESGSMYDGSIWWGLGYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMSRWLEELRGHADTNIVIMLIGNKCDLGTLRAVPTEDAQEFAQRENLFFMETSALESTNVETAFLTILTEIYRLISKKTLTANDEADPGGSSGLLKGTRIIVPNQDMNDKKGGCCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3U7</accession>
    <name>A0A392M3U7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Serine aminopeptidase S33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002781</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003056">
        <property type="protein sequence ID" value="MCH81986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3U7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42886:SF38">
        <property type="entry name" value="ALPHA_BETA-HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42886">
        <property type="entry name" value="RE40534P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serine aminopeptidase S33" evidence="1">
        <location>
            <begin position="3"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12724" checksum="CFC658761ECCD3A9" modified="2018-12-05" version="1" fragment="single">MVNLAAALEKDGISAFRFDFAGNGESEGSFQYGNYYREVEDLRAIVQHFREKKYVITAIVGHSKVSGESVVFRRFAGNVAFCRFVGGNVVLLYASKFKDIDTVVNISGRFNLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Y4</accession>
    <name>A0A392M3Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA topoisomerase 2-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003060">
        <property type="protein sequence ID" value="MCH81989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046522">
        <property type="entry name" value="DUF6699"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47576">
        <property type="entry name" value="BRCT DOMAIN DNA REPAIR PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47576:SF2">
        <property type="entry name" value="BRCT DOMAIN DNA REPAIR PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20415">
        <property type="entry name" value="DUF6699"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BRCT" evidence="1">
        <location>
            <begin position="46"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="386" mass="43619" checksum="F1071B3A0CA90548" modified="2018-12-05" version="1">MHLDDFRLLPGYTNAGNCLPAKIHEIKHTHHAEELRRFSGRESNRSLDSTLSGCSIYVDPSISSELQNKVVEAASREGASFVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRLVNMSVDLARQVGLMLEDVHNGISGKEAVKQKVLDEVGYKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNENHTSIFFDAKGDGKDADASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEIGPSTRTFFSHNGFTCLQVLDHIHAFYQENMPSHEIEVAIHTDSRHADRLRSVYSSKETAERGYVMFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4D5</accession>
    <name>A0A392M4D5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002985</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003329">
        <property type="protein sequence ID" value="MCH82185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4D5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF49">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="20171" checksum="CB3B178B01E266DC" modified="2018-12-05" version="1">MSLLIGLKHWPTFCRSLNVKTLKPFNGPELGGLKKGMLIPVGSPLHLGDFQPISLLGSLYKLVAKVLAGRLAVVMDKIISPNQPAYIKGSQLVDGVVAINEIINLAKKSRKRDLVLMQSVRLGFESACVFSGCLSIVVNGSQTQEINTQKGLKQGDPQLGFYSGFKVGNSGLGVILCSSEKQQWETC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4W1</accession>
    <name>A0A392M4W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine/threonine protein kinase SRPK1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003154</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003559">
        <property type="protein sequence ID" value="MCH82351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676:SF27">
        <property type="entry name" value="ASPARTYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34676">
        <property type="entry name" value="DUF4219 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="172"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="115"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="122"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="28561" checksum="9D9233D6F42C19F4" modified="2018-12-05" version="1" fragment="single">NEQVQEAKANLLVHQYEMFKMKEDEDIETMFVRFQTLVSGLQVLKKSYTVPDHVRKILRSLPPKWRPKVTAFQEAKVIKDVTLESHISSLRSHEMELQADEPEKNMKSIALSSIKSSSKPMKSKEVEVGKERTAQEKSDEEMTMIIRRFQQWNRKNNVPNRGSGSKEEEQLKCYNCSKTGHFIAECPDLSLKDEGKRSNSKKKNFKSRVKKSLMAMWEDLDELIDDEGEKEVNLALMANASSDESSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M559</accession>
    <name>A0A392M559_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003247</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003693">
        <property type="protein sequence ID" value="MCH82441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M559"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF11">
        <property type="entry name" value="ELEMENT PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="3">
        <location>
            <begin position="147"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="361"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="505"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="444"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="361"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="390"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="509"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="690" mass="78867" checksum="199BC1CE40EC55C2" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5Z2</accession>
    <name>A0A392M5Z2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aspartic peptidase DDI1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002617</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002821">
        <property type="protein sequence ID" value="MCH81824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="508"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="129"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="517"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="543" mass="62920" checksum="4A9C08621CB750FD" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6L6</accession>
    <name>A0A392M6L6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0003692</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004325">
        <property type="protein sequence ID" value="MCH82879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.430:FF:000001">
        <property type="entry name" value="Receptor-like protein kinase FERONIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000039">
        <property type="entry name" value="receptor-like protein kinase FERONIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.430">
        <property type="entry name" value="Galactose-binding lectin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF68">
        <property type="entry name" value="REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="387"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="481"/>
            <end position="703"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="509"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="703"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH82879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="703" mass="77552" checksum="14DB5B7A40F09B52" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6Q0</accession>
    <name>A0A392M6Q0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003925</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004666">
        <property type="protein sequence ID" value="MCH83110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6Q0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057135">
        <property type="entry name" value="At4g27190-like_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF183">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23247">
        <property type="entry name" value="LRR_RPS2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="4">
        <location>
            <begin position="463"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="4">
        <location>
            <begin position="596"/>
            <end position="718"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="730"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="730" mass="83106" checksum="A317F4C7EC225644" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6T8</accession>
    <name>A0A392M6T8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lectin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003989</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004759">
        <property type="protein sequence ID" value="MCH83172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd06899">
        <property type="entry name" value="lectin_legume_LecRK_Arcelin_ConA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019825">
        <property type="entry name" value="Lectin_legB_Mn/Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF49">
        <property type="entry name" value="OS10G0129200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00307">
        <property type="entry name" value="LECTIN_LEGUME_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="Legume lectin" evidence="4">
        <location>
            <begin position="67"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="21556" checksum="2C5B3E4EE72BABC1" modified="2018-12-05" version="1">MLMRHKVEGEGGAATILGPGLAGSLFDWALSVALVALVILVAPVFRVVLAVARHWGVAYSVLVLCCYSNFNTNKAALTFQGNSKVLPSGVLDLTDPAVVKTVGRVLYKIPVPLWNRTTGNVASFLTNFSFTMIDIPNLLPADGIIFFLAPNTDFPSNSEGGLLGVVDGNRAYNEFVGVEFDTYQNEWDPSYITFWNRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7B8</accession>
    <name>A0A392M7B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transformation/transcription domain-associated protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003980">
        <property type="protein sequence ID" value="MCH82648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035267">
        <property type="term" value="C:NuA4 histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050517">
        <property type="entry name" value="DDR_Repair_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003151">
        <property type="entry name" value="PIK-rel_kinase_FAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014009">
        <property type="entry name" value="PIK_FAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046805">
        <property type="entry name" value="Tra1_ring"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11139">
        <property type="entry name" value="ATAXIA TELANGIECTASIA MUTATED ATM -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11139:SF1">
        <property type="entry name" value="TRANSFORMATION_TRANSCRIPTION DOMAIN-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02259">
        <property type="entry name" value="FAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20206">
        <property type="entry name" value="Tra1_ring"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51189">
        <property type="entry name" value="FAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAT" evidence="1">
        <location>
            <begin position="86"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="629" mass="72596" checksum="AC5F6B0A00D8B02B" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9A6</accession>
    <name>A0A392M9A6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005085">
        <property type="protein sequence ID" value="MCH83378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9A6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16332" checksum="5BDD926F3BC9F0F9" modified="2018-12-05" version="1">MMVFLVAAAAKPKLMPWCYLEMWLFGHGIFIIVLSILLMVLQKGHQFIFIIVLPVIIVLIMLSMEFLPPFVLLMVFNAFNTTPFHSVKVAILRKVVIIYFGLQHDRRLVREALQKMKGKIHEIAGVVYWSPISSRVLQVYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9M6</accession>
    <name>A0A392M9M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein fluG-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003717</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004360">
        <property type="protein sequence ID" value="MCH82904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamine synthetase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.590.10">
        <property type="entry name" value="Glutamine synthetase/guanido kinase, catalytic domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43785">
        <property type="entry name" value="GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43785:SF2">
        <property type="entry name" value="TYPE-1 GLUTAMINE SYNTHETASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51987">
        <property type="entry name" value="GS_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GS catalytic" evidence="4">
        <location>
            <begin position="1"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="27036" checksum="189F5B8553E54888" modified="2018-12-05" version="1" fragment="single">MNAGFENEFFLLKSITREGKEEWIPFDSSPYCSSSAFDAASPILREVASALHSMGIPVEQKQYALDDLGSGSHVHLSLWQNGQNVFMASDGSSKYGISTLGKEFMAGVLYNLPSILPFVAPLPISYDRLQPNTWSGAYLFWGNENKEAPLRAASPPGTPGGLVSNFEVKSFDGSANPYLGLAAIIAAGIDGLRRHLSLPEPVDKDPNPENLQRLPKSLSESLEALHKADFLEEFFSDKSLTAIKAIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAC0</accession>
    <name>A0A392MAC0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0004940</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006278">
        <property type="protein sequence ID" value="MCH84109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="92"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH84109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="210" mass="24393" checksum="10516EAE8472E12B" modified="2018-12-05" version="1">MKISDLKGISSTFCMHKIKMEDEFKPVVEPQRRLNPTLKEVVKKEVLKLLEADMIYPISDSVWVSPVHVVHKKGGMTVVRNDKNELIPTRTVTGWRMCIDYQRLNSATRKDHFPLPFMDQMLERSAGQAYYYFLDGYSGYNQITVDPEDQEKTAFTFPFGIFSYRRMPFGLCNAHATFQRCMLAIFADMMEDTLEVFMDDFSVFGKSFDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAD7</accession>
    <name>A0A392MAD7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sister chromatid cohesion PDS5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005299</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006859">
        <property type="protein sequence ID" value="MCH84467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAD7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039776">
        <property type="entry name" value="Pds5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663">
        <property type="entry name" value="ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663:SF67">
        <property type="entry name" value="HEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20168">
        <property type="entry name" value="PDS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16875" checksum="43AF4592C304BADB" modified="2018-12-05" version="1" fragment="single">MLEERTNLPTVLQSLGCIAQTAMPVFETRESEIEEFIINKILKSDSKDDHTRASWDDKSDICVLKIYGIKTVVKSYLPVKDALVRPGIDGLLDILRNVLSYGEISKDIKSSSVDKAHLRLASAKAVLRLARLWDHKIPADIFHLTIKTSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAJ3</accession>
    <name>A0A392MAJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006369">
        <property type="protein sequence ID" value="MCH84169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11950" checksum="6A880E6B34416EDC" modified="2018-12-05" version="1">MKLLISGHREAVGAPEPHAIGAKRGKTLPFKLNKLGVWRKIRYPPHTIFNPFTVVELSASLPMGPHASPLVEPSILRRLHRQWFCRCIRHFFAGSTNCCYICGTTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB65</accession>
    <name>A0A392MB65_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Mediator of RNA polymerase II transcription subunit 14</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Mediator complex subunit 14</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0005363</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the Mediator complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the Mediator complex subunit 14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006967">
        <property type="protein sequence ID" value="MCH84531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070847">
        <property type="term" value="C:core mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055122">
        <property type="entry name" value="Med14_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013947">
        <property type="entry name" value="Mediator_Med14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12809">
        <property type="entry name" value="MEDIATOR COMPLEX SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12809:SF2">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08638">
        <property type="entry name" value="Med14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0010">Activator</keyword>
    <keyword evidence="6 7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Mediator complex subunit MED14 N-terminal" evidence="9">
        <location>
            <begin position="10"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="291"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="296"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH84531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="450" mass="50928" checksum="6F5ABF84A7784844" modified="2018-12-05" version="1">MATSELGQQTVELSTLVSRTAQDSYNSLKELVDKCRSTELSDTDKKISMLKFLSKTQQRMIRLNVLSKWCQQVPLIQHCQQLASTVSNHDMCFTQAADSLFFMHEGLQQARAPVYDVPSAIEILLSGSYERLPKCIEDVGSQYALTEDKQKPALKKLDMLVRSKLLEVSLPKEISNIKVSDGTATVRVDGEFQVLLTLGYRGHMSLWRILHLELLVGEKNKPVKLEEFRRHVLGDDLERRMAAAENPFSILYSVLHELCVTLVMDTVIRQVQTLRQGRWKDAIRFEIISDGGTGHGASSSSVQNPDGESDSSGPRTPGLKIIYWLDFDKNAGTSDSGACPYIKIEPGSDLQIKCTHSIFVIDPLTGKEAEFFLDQNCIDVEWLILRAICCNRYTRLLEIKRELVKNVQVCRTADDVVLQSCMGEPDVEYKQVRFIEEISNWYYALGFLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCJ8</accession>
    <name>A0A392MCJ8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005672</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007466">
        <property type="protein sequence ID" value="MCH84835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218:SF9">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19634" checksum="24D33E362A589CF3" modified="2018-12-05" version="1" fragment="single">MHKPXMIVIEETRCDPFSLERTFKLLGYDGLVATEVQGYAGGIAVAWQKDQINVEACIKKFQFIHLKVKYPSGEQWYFTPIYASPNEENRRLMWEDLRGIAQNMREAWLLAGDFNDIASAEEKKGGAPTSVRRCSKFRERINACKLIDLGAMGPKFTWRGPLYHGGQRIYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCL4</accession>
    <name>A0A392MCL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone-lysine N-methyltransferase ATX5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005872</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007797">
        <property type="protein sequence ID" value="MCH85031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd15495">
        <property type="entry name" value="PHD_ATX3_4_5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000454">
        <property type="entry name" value="Histone-lysine N-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042011">
        <property type="entry name" value="ATX3/4/5_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034732">
        <property type="entry name" value="EPHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050701">
        <property type="entry name" value="Histone_Mod_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13793:SF132">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE ATX5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13793">
        <property type="entry name" value="PHD FINGER PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13831">
        <property type="entry name" value="PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13832">
        <property type="entry name" value="zf-HC5HC2H_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51805">
        <property type="entry name" value="EPHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PHD-type" evidence="5">
        <location>
            <begin position="46"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="PHD-type" evidence="6">
        <location>
            <begin position="100"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21723" checksum="ABB8FF73119E3394" modified="2018-12-05" version="1">MLQVAESHANSLVSVKPKKPSLKERKHKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDEKMEPALGLHYLNFRFVLFASKSMVPAHSVANVPLISMPCAHQGPVTEWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCV4</accession>
    <name>A0A392MCV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005430</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007076">
        <property type="protein sequence ID" value="MCH84598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17095" checksum="E91B9F33E276C1C2" modified="2018-12-05" version="1" fragment="single">SKVKCYNCDKYGHFADECRSGKGKKSDEEANVAQSTETGKDSVLLMMATTCESDSTGQEWFLDSGCSNHMIGNRDWLAELDTNKKTNVKLADCRYLTAEGIGNVIIKRSDGKKAVIENVLEISVEIKPVKESNLQVHNTIWKDDVYVKYYTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDH4</accession>
    <name>A0A392MDH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008649">
        <property type="protein sequence ID" value="MCH85516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF71">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="21272" checksum="1E58A84B13827C66" modified="2018-12-05" version="1">MPVKDTLRQNEWRLTGQRRESWNILRMLSQQSHLPWCIIGDFNDILTTEDKRGHAPHPRWLLNGFRQAISDCDFIDTSIQGHAYTWARRLGHEDVVEERLDRLLVSQSWMNMFPHSSISFRERLAMEPNIENVVLNGYFTALKSLTNGDASLEENTKKILRGVRKELKSFNLLPTILLMVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF26</accession>
    <name>A0A392MF26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009720">
        <property type="protein sequence ID" value="MCH86092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="22905" checksum="233A5D2F13B7253D" modified="2018-12-05" version="1" fragment="single">MCDFYAEIYQKLHESGGTKFSFPSAEGEMIPEWFNHQSRGTTESGTTFPLWFRKKMPSIMIFVSVKSKTAFQWFLEVESPFVMSMSSMRIYDDIPPSHTCLFDMQLKEHITFHRQYYWPKVILLEEAFLKNEWIHAEIKFESGTAKFHLYFEEENNGDDIRFTNPYGKIKLDELEHIYQELEEELQAKIVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFE7</accession>
    <name>A0A392MFE7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dirigent protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0006656</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Secreted</location>
            <location evidence="4">Extracellular space</location>
            <location evidence="4">Apoplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the plant dirigent protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009169">
        <property type="protein sequence ID" value="MCH85805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009699">
        <property type="term" value="P:phenylpropanoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.480.10">
        <property type="entry name" value="Allene oxide cyclase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044859">
        <property type="entry name" value="Allene_oxi_cyc_Dirigent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004265">
        <property type="entry name" value="Dirigent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46215:SF15">
        <property type="entry name" value="DIRIGENT PROTEIN 24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46215">
        <property type="entry name" value="DIRIGENT PROTEIN 24-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03018">
        <property type="entry name" value="Dirigent"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0052">Apoplast</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0964">Secreted</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH85805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="26290" checksum="5DE17B58C1A266FF" modified="2018-12-05" version="1" fragment="single">NEEANADPPVAEVEAPAVDNVSVSQQPQPVAKQPSLSFFMHDILGGSHPSSRVVTGIVANSDVTGLPFSKQNNNIFPITGGIPLVNPKLNGIITNNNLPLLVGLSGGQSSTVFQNRGTNNVVTGGNNQPFVSAGNLPGGFTVQKLMFGSVTVIDDQLTEGHELGSSVVGRVQGFYTASSLDGTSQSVVMTMLLHGGNDHNGVDDSISLFGIHRTASPKSEVAVIGGTGKYENARGYAALETLLKEDQHTTDGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFK7</accession>
    <name>A0A392MFK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007126</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010047">
        <property type="protein sequence ID" value="MCH86272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="24805" checksum="CC2D30102BE86A7D" modified="2018-12-05" version="1" fragment="single">VLLGGTRIIESYLKQILLNNVFLERLEIKDFNGVNQEWSNLDLCSGNSIRSLTIAGWHSSSLPFACDLFINLCSLLLYDCPLLDSISRDGLPLSLRSITIRKCPKLIASMEVLGLNKIYSLDDVNVCDDFVESFPKENLLPPTIDIIRLDCCPKLRLIDNRGLLHLKSLKALHITNCCCLEHFSGEDLPESLSTLYFYGCPLLQCHNVAHIPSVKIIELVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFL1</accession>
    <name>A0A392MFL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Respiratory burst oxidase protein E-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009717">
        <property type="protein sequence ID" value="MCH86091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050664">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013623">
        <property type="entry name" value="NADPH_Ox"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08414">
        <property type="entry name" value="NADPH_Ox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADPH oxidase Respiratory burst" evidence="1">
        <location>
            <begin position="142"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23171" checksum="5FBA6A8F38CD9CAA" modified="2018-12-05" version="1">MRTSSIERCTTSKNELDDLPANFETESEKHVYGAMLPVFLNDLRXXXXXXXXXXXXXXXXXXXXXXXXXXAPNVSPSSSHAIGDEATGGFSRSLSIASRIRKKFPWLRSLSLQTSTSSSESVTTAMEDPMMARNARRIRAELERTRSSAQRGLKGLRFISKSGEACEELWRKVEKRFGFLAKDGLLDREEFGECIGKLYYMIFFGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG59</accession>
    <name>A0A392MG59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Chloride channel protein CLC-d</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0006068</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008109">
        <property type="protein sequence ID" value="MCH85224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015108">
        <property type="term" value="F:chloride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3080.10">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051280">
        <property type="entry name" value="Cl-channel/antiporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="ClC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689:SF136">
        <property type="entry name" value="H(+)_CL(-) EXCHANGE TRANSPORTER 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6486" checksum="AB61733A583020A9" modified="2018-12-05" version="1">MYTKSSDSHLCSGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHL8</accession>
    <name>A0A392MHL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007543</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010764">
        <property type="protein sequence ID" value="MCH86683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="258"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="317" mass="34581" checksum="68005A36ABA1EF4B" modified="2018-12-05" version="1" fragment="single">GLGTYDYIVAMRELEQEQEQLGVGGQQSPQMSTVSSFTALSSVSSFNALHRGAWCTPPRMFLENQDDVVPPETGSVSSLGKKSMREEPLKKKNPAAVKISPWTLARLNAEXXXXXXAEVRKKSKILQPVIRRDQASRLEPDIRFGSSGRRTVPTIENNKTRDNKHIYLPADISMESMTNVSFNNTNMGFIGRSGFAPPHLRSAFQTSQAMSSSAGIVSSSPESSLDSPDIHTFRATGADEARHLAGLSAAGAEALKEIPLSRSTSDGYEASGGEDSDQVPSRVVQRIADWSSVLFRADQDERAFRPTLSSSMSHSRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI82</accession>
    <name>A0A392MI82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">P-loop containing nucleoside triphosphate hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010284">
        <property type="protein sequence ID" value="MCH86418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044802">
        <property type="entry name" value="NADKc-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153">
        <property type="entry name" value="CALMODULIN CALCIUM-DEPENDENT NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153:SF13">
        <property type="entry name" value="P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22570" checksum="37DC34245FB1760F" modified="2018-12-05" version="1">MARNVHRRRYRMGAGYKVNDDGTVTENYWERIENEEPEQVGGKKRKPYRLELVGVVCDAYLAVIRGISHAPMEVVSVGKLIPHKGLSSTHIADVRTSLVDNLTDQITIVKLIGWKERDKTLLVDPDEIDCLKRVARLNEDADSIYELYKHPNPTCEAGSIWKDIVLSPSRLNIQQELKCAIQKVEIFAMQNANLLMEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIV9</accession>
    <name>A0A392MIV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012187">
        <property type="protein sequence ID" value="MCH87432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8235" checksum="E50759F7E6C400C9" modified="2018-12-05" version="1" fragment="single">MGLEYRKGLWSLLPRNDKHENACHIDKMSIERLFKQPNSKARTPDQNLAVRKLFETQTNSDPTPTLRPAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKE9</accession>
    <name>A0A392MKE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013240">
        <property type="protein sequence ID" value="MCH87960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF12">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="6"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="300" mass="34865" checksum="C71B9E4AC5F4EEAF" modified="2018-12-05" version="1">MAEEEEDIISTLPDVLLCHILSFLQTKQAVATTILSKRWNNLCLSVPSLYFKTTITTIDQNFRFNDNVYTVLLSRHSAVKGFRLKLIYDYPQILYLRGPINSIFKWLNYVVQRGVECLDLRLRITFWEAENLVLNLPISILTCKTLVVLKLCSYGVQQGSSSVLLPSLKTLHLKLVWFPKLRDLMLFLTGCPILQDLYTYDLYFDSEESLTCNEWKSFCLSNLTRADIDCFHSHLTLEAVQNVSSLRFEIDQVYSHNGFIPTFHNLTQLELLHLNYSWGFLLEVLKHCPMLQKLELHEVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKN9</accession>
    <name>A0A392MKN9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008442</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012467">
        <property type="protein sequence ID" value="MCH87569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="3">
        <location>
            <begin position="20"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="85"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="336"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="336"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="416" mass="46637" checksum="FC88938DB7D8E037" modified="2018-12-05" version="1" fragment="single">MVRVNHTDPILDNSLPYFVHPGDGPTSAVVQPLLTGSNFQSWFRSMKRALGAKMKLEFVDGTLPMPEDDFDPAYRAWHRCNQLVSSWILNSVSSSIAQSVVFMENTIDIWNDLRERFSQGDLIRISELQQEIYAMKQGTRSVTDFYSDLKILWEELELYMPIPSCTCRQHCTCEAMRSARRNHLLLHTIRFLTGLNENFATVKSQILLMDPVPPMNKVFSMVIQYERHGKFAEFDDTKLLINAAKTSKSSSGSHSSSSNSIVRHCTFCGKDNHFVENCFKKNGVPPHMKKFSSANHAATAGGSNDPVPAINPSISQEQYDQLMILLQNSQLVQGSASASSNQVGSSMNSGHSPDSHKGASHHICNSLNWFQSYIEITPIKIQLPNGNFAIAKFSGVEKRYLRMIGSASEHEGLYHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKZ9</accession>
    <name>A0A392MKZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Nuclear pore complex protein Nup107-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009069</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nuclear pore complex</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013674">
        <property type="protein sequence ID" value="MCH88186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031080">
        <property type="term" value="C:nuclear pore outer ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006406">
        <property type="term" value="P:mRNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000973">
        <property type="term" value="P:post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007252">
        <property type="entry name" value="Nup84/Nup107"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13003:SF2">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13003">
        <property type="entry name" value="NUP107-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0509">mRNA transport</keyword>
    <keyword evidence="6" id="KW-0906">Nuclear pore complex</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH88186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11657" checksum="E455437E9A633C0C" modified="2018-12-05" version="1" fragment="single">ELPRFQAGVTMEISRLDAWYSNKDGILEFPATYIVKGLCRRCCLPEVILRCMQVSVSLMGSGVQPDSHDNFIELVGSPETRFLDLFSQQQLQARYYFLKKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLC2</accession>
    <name>A0A392MLC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Embryo defective 2410 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013111">
        <property type="protein sequence ID" value="MCH87895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053022">
        <property type="entry name" value="Chloroplast_translocon_comp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34457">
        <property type="entry name" value="EMBRYO DEFECTIVE 2410"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34457:SF3">
        <property type="entry name" value="PROTEIN TIC236, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12392" checksum="EA43E998ED9ACF6C" modified="2018-12-05" version="1" fragment="single">MLEKGISDNLVGEVSISGLKLNQLMLAPQLSGLLTVSPERIKLDASGRPDESLAVEFVGPLKPSSEDGLQSGKLLSISLQKGQLRANVCFQPFHSANLEVRHFPLDELELASLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLM8</accession>
    <name>A0A392MLM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WD and tetratricopeptide repeats protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014105">
        <property type="protein sequence ID" value="MCH88400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080008">
        <property type="term" value="C:Cul4-RING E3 ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045717">
        <property type="term" value="P:negative regulation of fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045151">
        <property type="entry name" value="DCAF8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15574:SF40">
        <property type="entry name" value="WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15574">
        <property type="entry name" value="WD REPEAT DOMAIN-CONTAINING FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9155" checksum="F7992945501FCC75" modified="2018-12-05" version="1" fragment="single">LDLRNGAKRSLADPPKQVLALKSVDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHLSDRVSPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLZ9</accession>
    <name>A0A392MLZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014113">
        <property type="protein sequence ID" value="MCH88401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="385" mass="43573" checksum="A209901A18F30F8F" modified="2018-12-05" version="1" fragment="single">MSVLVNGSPTGDFNVGKGLRQGDPLSPFLFLIVAEGLTGLMNKAVDKGLFHGYQVSHNISFHTLQFADDTIIVGEGNWENLWSIKTVLRSFELVSGLKVNFFKSKLYGINLDDRFLRASSSFLHCGVDHLPFRFLGIPVGANPRRKATWSPIVDGMKKRLSAWNGRLLSIGGANQRRKATWSPIVDGMKKRLSAWNGRHLSIGGGLDSKKMCWVSWDRICQSKENGGLGIKNLELFNSSLLCKWKWRCLYDVEAPWYDLLRFRYGSLVANFLYGEGRDNLNHASIWWRDLWSLGGKDDGNWFGNDVSSILGDGNDISFWKERWIGTAPLRDLFPSLHSKTTQPDGYISTMGLWESDTWTWKFDWTTVLSDVESEAAHDLLQILDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM06</accession>
    <name>A0A392MM06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Linoleate 9S-lipoxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009297</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014125">
        <property type="protein sequence ID" value="MCH88411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001024">
        <property type="entry name" value="PLAT/LH2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50095">
        <property type="entry name" value="PLAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLAT" evidence="2">
        <location>
            <begin position="23"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11337" checksum="DD2C0DA2122C25D9" modified="2018-12-05" version="1" fragment="single">MSSLETDIINNGKKLIKGTVVLKQKNLNVVGDSVAPSILDTSSVALKLISASKSDGSGKGKVGKQTFLEGKTSPFNIEFEWNHHSMGNPGAFYIENFMQQEFFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MND7</accession>
    <name>A0A392MND7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">PHD finger protein ALFIN-LIKE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0009506</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Interacts with H3K4me3 and to a lesser extent with H3K4me2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">The PHD-type zinc finger mediates the binding to H3K4me3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the Alfin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014504">
        <property type="protein sequence ID" value="MCH88615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MND7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd15613">
        <property type="entry name" value="PHD_AL_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000306">
        <property type="entry name" value="PHD finger alfin-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045104">
        <property type="entry name" value="Alfin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044104">
        <property type="entry name" value="PHD_AL_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12321">
        <property type="entry name" value="CPG BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12321:SF60">
        <property type="entry name" value="PHD FINGER PROTEIN ALFIN-LIKE 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="3 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5 11" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 10 11" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PHD-type" evidence="13">
        <location>
            <begin position="103"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="44"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="45"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="12">
        <location>
            <begin position="57"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="12">
        <location>
            <begin position="88"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU369089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH88615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="16828" checksum="6DFDB45133F39D19" modified="2018-12-05" version="1" fragment="single">MGSKGDVWGVRGGGVLVDLRTGTWVPSSLQMINDLPTIFELATGNAKQSKDQPTAHNNGSNSKYKSSGKSRQSEPQAKGVKMSAPPKEEDDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNI0</accession>
    <name>A0A392MNI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GDP-mannose-dependent alpha-mannosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015345">
        <property type="protein sequence ID" value="MCH89047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009941">
        <property type="term" value="C:chloroplast envelope"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046510">
        <property type="term" value="F:UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009247">
        <property type="term" value="P:glycolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046506">
        <property type="term" value="P:sulfolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050194">
        <property type="entry name" value="Glycosyltransferase_grp1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947:SF16">
        <property type="entry name" value="GROUP 1 FAMILY GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947">
        <property type="entry name" value="SULFOQUINOVOSYL TRANSFERASE SQD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13910" checksum="817CACEA99E7640E" modified="2018-12-05" version="1" fragment="single">YIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSESFHPRYRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKGLMDKLPEARIAFIGDGPYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQI1</accession>
    <name>A0A392MQI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative serine/threonine-kinase GCN2-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010648</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016802">
        <property type="protein sequence ID" value="MCH89747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033554">
        <property type="term" value="P:cellular response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009893">
        <property type="term" value="P:positive regulation of metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051246">
        <property type="term" value="P:regulation of protein metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.110.10:FF:000050">
        <property type="entry name" value="eIF-2-alpha kinase GCN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040213">
        <property type="entry name" value="GIR2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006575">
        <property type="entry name" value="RWD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12292">
        <property type="entry name" value="RWD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05773">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00591">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50908">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RWD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12060" checksum="C879881E76134285" modified="2018-12-05" version="1" fragment="single">CAIFQEDCEFVPGSPPQVVIKLRCLPGYPFKCPKLQITPEMGLSETDANKLLSLLLDQASLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESVSLLLLTYYFSVKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQP2</accession>
    <name>A0A392MQP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Myb-like protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0010719</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016974">
        <property type="protein sequence ID" value="MCH89817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000981">
        <property type="term" value="F:DNA-binding transcription factor activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050560">
        <property type="entry name" value="MYB_TF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45614">
        <property type="entry name" value="MYB PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45614:SF175">
        <property type="entry name" value="TRANSCRIPTION FACTOR MYB105-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH myb-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="Myb-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH89817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="247" mass="27661" checksum="C97B4A59D8E41F02" modified="2018-12-05" version="1">MQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNANFVSRDIATGMEPVPSPYCINLPNGYNMTTSFPFSSFHGVIDGGVDCGLNGSAHLSGSKEAISSNKQTPSSLFGLFAQQTPLDFISGGIRNDHYSQMKCWDNQPTGFYHQYPQYMMQMQQQNNNFYSFSSNSTTAATSTTQILGSEVSLSSVAATEDHRDQVLMSNPPPSDTIPFIDFLGVGATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR90</accession>
    <name>A0A392MR90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017454">
        <property type="protein sequence ID" value="MCH90030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7461" checksum="8D1A4677C42CBF59" modified="2018-12-05" version="1" fragment="single">MLGECRALLHDFSLQAQYPDRWQWQPDPVRGYSVHGAYRLLTSQQPATLDVAEELIWHTQVPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRZ8</accession>
    <name>A0A392MRZ8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CCR4-NOT transcription complex subunit 11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0011000</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">10/8</strain>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CNOT11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017568">
        <property type="protein sequence ID" value="MCH90093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010073261">
        <property type="protein sequence ID" value="MCI09605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030014">
        <property type="term" value="C:CCR4-NOT complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031047">
        <property type="term" value="P:regulatory ncRNA-mediated gene silencing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019312">
        <property type="entry name" value="CNOT11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15975">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15975:SF0">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10155">
        <property type="entry name" value="CNOT11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0943">RNA-mediated gene silencing</keyword>
    <keyword evidence="8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH90093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11675" checksum="20E34C2F669891BD" modified="2018-12-05" version="1" fragment="single">LFLMELENDANVVYHCGLTPGKLPDLVENNPLIAVEILTNLIKSPDISAEYFTVLVNMDMSLHSMEVVNRLTTAVELPSEFIHMYITNCISSCVNIKVFLCLML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS94</accession>
    <name>A0A392MS94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Calcium-transporting ATPase plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010047</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015588">
        <property type="protein sequence ID" value="MCH89154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.150.10:FF:000006">
        <property type="entry name" value="Calcium-transporting ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1110.10:FF:000011">
        <property type="entry name" value="Calcium-transporting ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.150.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059000">
        <property type="entry name" value="ATPase_P-type_domA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF453">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13246">
        <property type="entry name" value="Cation_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00122">
        <property type="entry name" value="E1-E2_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="Calcium ATPase, transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="P-type ATPase A" evidence="7">
        <location>
            <begin position="68"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="420" mass="45472" checksum="E0C0251623052296" modified="2018-12-05" version="1" fragment="single">LQDMTLMILGVCAIVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGESEPIMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWVLVKGHLGRKIREGRFWRWSGDDAMEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNNNDSSLSSELPDSATKLLLQSIFNNTGGEVVHNRKGKREILGTPTESAILEFGLSLGGDSKAERKACKIVKVEPFNSEKKRMGVVVELPDGGLRAHCKGASEIILAACDKVIGSNGDVVALDGESINYLNSIINQFANEALRTLCLAYME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSZ9</accession>
    <name>A0A392MSZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycerol-3-phosphate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011558</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018750">
        <property type="protein sequence ID" value="MCH90637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="87"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22198" checksum="010E7439FB4D454F" modified="2018-12-05" version="1" fragment="single">MVWRLFHNKLPTDEHLSARGISLASMCSLCLTEVETSLHLFLQCPFASKIWNWNQLRFSNKFINWKTAISMIISNAALSGNLTALSADGASKGNPDPSACGGIFRNNQANDLVCFASNLGVCDAFSAELIGEITAIEIAQRRGCNHLWLECDSKLVTLAFKSQQAIPWKLRNCWNNCLFLLRNMYFVVSHIFREGNHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT15</accession>
    <name>A0A392MT15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011058</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017702">
        <property type="protein sequence ID" value="MCH90149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF243">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="7"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="228"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="406" mass="46466" checksum="D9CA5EFC4A07B240" modified="2018-12-05" version="1" fragment="single">MLLKIGSADVTTLGLWGMGGIGKTTLAEYAYTKLSFQFERRCLLENVREESTKRGLPAVRELFLSKLXXXXXXXXXXXXXXXILERRLACAKSLIVLDDVATLAQAENLNMCLGPGSRVIVTARDNQIFSRFNKCEIYEVEGLDEDDSLQLFCWYAFQKKHAKVGYEELSERATRYCGGNPXALKVLGANFGTKXKEVWESELEKLKKNPNRSIHEVLKLSFNDLDPTEQDIFLDIACFFELRLHDSDIDDDLPMTVLLDACDFCAVSGIEALCNKALITRNHNNSIKMHDLLVEMGREIVNEKSRKNPGRRSRLWDSKDVYDVLKYNNKGTEDVEVISFNIEISKIEDLDLSSDYFKSLKWLSDKLRYLHWDLFPLKSLPSTFCPEMLVVLKMTRGKLRKLWDGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTM3</accession>
    <name>A0A392MTM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin-protein ligase UPL1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016530">
        <property type="protein sequence ID" value="MCH89614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010309">
        <property type="entry name" value="E3_Ub_ligase_DUF908"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06012">
        <property type="entry name" value="DUF908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF908" evidence="1">
        <location>
            <begin position="2"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="246" mass="27274" checksum="8B83B84C9BADD6EB" modified="2018-12-05" version="1" fragment="single">MQIILENCPNKSTFDGIEHFKLLLASTDPEILIAALETLSALVKINPSKLHGSSKMVGCGSVNSSLLSLAQGWGSKEEGLGLYSCVMANEKAQNEALSLFPSDVEIGSDQSNYRIGTTLYFEVHGPSAQSEEHSADTIPPGLRVIHIPDLHLCKEDDLSLLKQFTEQYNIPSELRFSLLSRIRYAHAFRSPRICRLYSRICLLSFIVLVQSGDAHDELVSFFANEPEYTNELIRIVRSEETISGSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTV4</accession>
    <name>A0A392MTV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011824</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019302">
        <property type="protein sequence ID" value="MCH90901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11581" checksum="33D5259BFB626E4A" modified="2018-12-05" version="1" fragment="single">HVEGKAQRDQAELXNRHVEGKAQRDIVRHAEIGTQCDLDDQAEWSKCNGVYVVWSSIPVYNPPSVESIKALTFSIHEVRPVLIYSPPNIKPIKALTFVLHQVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU88</accession>
    <name>A0A392MU88_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ATP synthase subunit gamma, mitochondrial</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0011765</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019174">
        <property type="protein sequence ID" value="MCH90842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045259">
        <property type="term" value="C:proton-transporting ATP synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.80:FF:000001">
        <property type="entry name" value="ATP synthase gamma chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.80">
        <property type="entry name" value="ATP synthase, gamma subunit, helix hairpin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="ATP SYNTHASE GAMMA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693:SF22">
        <property type="entry name" value="ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="ATP synthase (F1-ATPase), gamma subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="8" id="KW-0139">CF(1)</keyword>
    <keyword evidence="5" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH90842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6585" checksum="86A0E9A8060924C9" modified="2018-12-05" version="1" fragment="single">MFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUI0</accession>
    <name>A0A392MUI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017279">
        <property type="protein sequence ID" value="MCH89954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8755" checksum="6CAC0ED26AF35B00" modified="2018-12-05" version="1">MSDEEDIIGVDISNSGARKGEALKSSVSEERTRLRDVSFKKPIPFLQVNLSPVHIEAIQGLQRGEAKDSRGNRFSRKGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV79</accession>
    <name>A0A392MV79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RPM1-interacting protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012334</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020367">
        <property type="protein sequence ID" value="MCH91407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040387">
        <property type="entry name" value="RIN4/NOI4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008700">
        <property type="entry name" value="TypeIII_avirulence_cleave"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33159:SF6">
        <property type="entry name" value="RPM1-INTERACTING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33159">
        <property type="entry name" value="RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05627">
        <property type="entry name" value="AvrRpt-cleavage"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RIN4 pathogenic type III effector avirulence factor Avr cleavage site" evidence="1">
        <location>
            <begin position="3"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7910" checksum="1192189CD8D855A4" modified="2018-12-05" version="1" fragment="single">PDKSAAVPKFGDWDESDPASADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKAQGCCFFWSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYA7</accession>
    <name>A0A392MYA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase RecG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022402">
        <property type="protein sequence ID" value="MCH92303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10361" checksum="2DEB56DB1F54FDEC" modified="2018-12-05" version="1">MEDAITDGSSKSDDYMAPHVLAMSATPXXXXXXXXXYGDMSLTQAPSPNSKIVLESILDLYYSACISPRSGCLVLDMRECFEIPVIPPTYVGPHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N111</accession>
    <name>A0A392N111_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014431</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025036">
        <property type="protein sequence ID" value="MCH93480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6513" checksum="5A41F5EDA9AC7963" modified="2018-12-05" version="1" fragment="single">PVFYEVDPSEVRHQTGKFGEAFENLISRISVDKDRKXXWETALLEIGGTAGIVIINSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3H6</accession>
    <name>A0A392N3H6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026920">
        <property type="protein sequence ID" value="MCH94271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3H6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="11502" checksum="B1353F8470B5AD6A" modified="2018-12-05" version="1">MEKEERVRRRFEKNEEDLGGGRNSTADLKSGGFAGGRKNGDVRSGGGVEGAIGTLSGGFGGGRGGGGIGGVKILTGSDLRSGGSGGGRIRVGSRSPAALKFTTALWRQRTSGGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N432</accession>
    <name>A0A392N432_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-protease polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027093">
        <property type="protein sequence ID" value="MCH94342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N432"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF8">
        <property type="entry name" value="OS04G0172440 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23034" checksum="0687E3FE2EE99F5A" modified="2018-12-05" version="1">MHKLQSNFGSKTVGTSYVGEARREILGMSSVTLHDMASAGTCYNTGHKRKPSSTRRFDRPNGNTSPHHAAEGTRFGCSMPNQPITTNTPQDVESAQMYRALEERLKVVEGFSAYGIDALYMCLVSDVVIPPKFKVPGFERYKGIDCPRNHLRMFCRKMATYAADEKLMIHVFQDSLSGASLDWYMQLERTHIQTWKDLADAFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N555</accession>
    <name>A0A392N555_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027972">
        <property type="protein sequence ID" value="MCH94713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N555"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF34">
        <property type="entry name" value="EMB|CAB62440.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box/LRR-repeat protein 15/At3g58940/PEG3-like LRR" evidence="1">
        <location>
            <begin position="4"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="277" mass="31472" checksum="FD07522921BF9B0E" modified="2018-12-05" version="1" fragment="single">PSYQKFPCLKSLSLSFVSISELDLCLLLAACPRLETLSMVSPEIALSDSQASMEISSSSLKEFSVESFGLDKFVLEADLLEHLHLKDCTFEIFELIGKGTLKVLKLDDVSVIHLDIGENADNLEFVDISNFTIMWPKFYHMISKASKLRRLRLWGVVFEDDDEVVDLETISVCFPQLSHLSLSYDLRDGVLNYGLQGLSLLVNVAVLELGWTSINDLFATWVAGLLERCPNLKKLIIYGFVSEVKIHEECQILAKFTEFIIELGRKYMHVKIEFEYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6G7</accession>
    <name>A0A392N6G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Clustered mitochondria protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026450">
        <property type="protein sequence ID" value="MCH94084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027523">
        <property type="entry name" value="CLU_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12601">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12601:SF17">
        <property type="entry name" value="PROTEIN REDUCED CHLOROPLAST COVERAGE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13374">
        <property type="entry name" value="TPR_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13424">
        <property type="entry name" value="TPR_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14263" checksum="678E65B9F6F8BEC1" modified="2018-12-05" version="1" fragment="single">MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHIALRYLHKALKCNQKLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6Z4</accession>
    <name>A0A392N6Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030136">
        <property type="protein sequence ID" value="MCH95567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35300">
        <property type="entry name" value="COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35300:SF4">
        <property type="entry name" value="HISTONE ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="29391" checksum="D8C1BAB4789AEDDD" modified="2018-12-05" version="1" fragment="single">SDRHNNPRTYLGPRPQQPPSGSPRPQQPPSAALAPNPVSDSNQHAHQNSKLSGSCNYPYSFPSGHHQQLSMEAKPSLNTTGSVYPLYYGGEAREPQVRTTVIDNTSSNTIFVGRPVIAPVSEPSGIGLLENSSYGRFQHVANRTVQETGLSTHDSPGGECDLSLRLGQCLHPCSSGKSSSAFEIDGVGLGLSPEGNNYSHVSFQRNRELSLYPRGAGYGTIDSNSRGNVEGEDQNSEAMFRKRKAPLANSEEDGQFCRHLGVPSNRFTGRPGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N896</accession>
    <name>A0A392N896_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Myb/SANT-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017000</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031294">
        <property type="protein sequence ID" value="MCH96017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024752">
        <property type="entry name" value="Myb/SANT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46929">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46929:SF18">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12776">
        <property type="entry name" value="Myb_DNA-bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Myb/SANT-like" evidence="2">
        <location>
            <begin position="22"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="283" mass="31820" checksum="EA69D5A478ECAA68" modified="2018-12-05" version="1" fragment="single">MEHCDLQGQRRDMKNKGRNVVWSSAMDKCLIEALVIQAKSGNRIEKCFNENAYTAACIAVNTCFNLNLNNQKVINRLKTLKKRYRVIKDILSQDGFRWNPNTKMIECDHDELWKRYVVAHPNAKGFRGKQMEMYEQLKIVCGNYQAASRWAKMKDGNGQVVDIKNYEDESASFASRSSENMSDTDGTESYNGPPEYGQIPDGYDEPPVVPPLRQPPKRSRSSDELQDALMTVASSIXXXXXXXXXXXXXXXXXXXXXXXXXIDGLEESKQISGGGVDGVGDQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8U4</accession>
    <name>A0A392N8U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RING finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028347">
        <property type="protein sequence ID" value="MCH94864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043312">
        <property type="entry name" value="AtBBR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47530">
        <property type="entry name" value="E3 UBIQUITIN LIGASE BIG BROTHER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47530:SF4">
        <property type="entry name" value="E3 UBIQUITIN LIGASE BIG BROTHER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12148" checksum="DBC636F6E9BDD99E" modified="2018-12-05" version="1" fragment="single">MNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDDDDEDDDNEEEYEEDEDAFDVHAHATVGENDNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9S5</accession>
    <name>A0A392N9S5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chaperone protein dnaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032166">
        <property type="protein sequence ID" value="MCH96373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45270:SF1">
        <property type="entry name" value="CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45270">
        <property type="entry name" value="OS03G0832900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10531" checksum="96B8512F395EA71D" modified="2018-12-05" version="1" fragment="single">GMACRPNTHRPSFHVNMVGLEKXXXXXXXXXXWDLDAEMMMDEDEEAFNLWLQQALASGLFCETSKRRKSWSPFKLPQKKGNKQWRRTSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBE3</accession>
    <name>A0A392NBE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">40S ribosomal protein S3-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0017985</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033822">
        <property type="protein sequence ID" value="MCH96992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="entry name" value="Ribosomal protein S3, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057258">
        <property type="entry name" value="Ribosomal_uS3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_uS3_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11760">
        <property type="entry name" value="30S/40S RIBOSOMAL PROTEIN S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11760:SF37">
        <property type="entry name" value="RIBOSOMAL PROTEIN S3, PUTATIVE, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="Ribosomal protein S3 C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017179390" evidence="4">
        <location>
            <begin position="24"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Small ribosomal subunit protein uS3 C-terminal" evidence="5">
        <location>
            <begin position="8"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6188" checksum="002A1AB29AE87DD0" modified="2018-12-05" version="1" fragment="single">MYLLLLLACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCN4</accession>
    <name>A0A392NCN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033281">
        <property type="protein sequence ID" value="MCH96798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12243" checksum="458F3F736EE5D303" modified="2018-12-05" version="1">MADCKRASPTMVAINDSSPNGTSISKKRKIIPSASQLLASEIPHQIPNSLADSPEKIISPVNSVNSTVAVAFNEIRSDHSPLTSSFSSGKLMENDGVVKELDATPLDPEVCFSKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDA6</accession>
    <name>A0A392NDA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">CBL-interacting protein kinase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0018843</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036066">
        <property type="protein sequence ID" value="MCH97847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000571">
        <property type="entry name" value="Maternal embryonic leucine zipper kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000096">
        <property type="entry name" value="Non-specific serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895">
        <property type="entry name" value="CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895:SF28">
        <property type="entry name" value="CBL-INTERACTING SERINE_THREONINE-PROTEIN KINASE 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="193"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="12"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00058225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH97847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="238" mass="27124" checksum="0B1F862B2883BD19" modified="2018-12-05" version="1" fragment="single">MERSGSVLMQRYEIGKLLGQGTFAKVYHARNLKNGMNVAIKVIDKEKVLRVGMIDQIKREISVMRLVRHPHVVELYEVMASKSKIYVVMEYVKGGELFDKVSKGKLKHDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALAETKHQDGLLHTTCGTPAYVAPEVIHRKGYDGMKADIWSCGVILYVLLAGYLPFRDPNLIEMYRKIGKADFKFPNWFASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDC2</accession>
    <name>A0A392NDC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018536</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035216">
        <property type="protein sequence ID" value="MCH97541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051714">
        <property type="entry name" value="Znf_CCHC_NABP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23002">
        <property type="entry name" value="ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="141"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="160"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22752" checksum="651182429B5F5247" modified="2018-12-05" version="1" fragment="single">MAGRMNGRGNQFAETLATLANIVARDHEPGREDEQRLERFMRHKPTLFTGGYAPKGAVKWVEEVEIIFEAMRCSEANKLTLGTYVLREEANKWWKIAKLRMGIGGVIRDFVTLVDKSRICDDDGKRVIENNNERRRNVGQCFKCGEMGHRSEACQEKVNCFNCGEEGHKSPVCKKPRKTMRKMFALNGDDAEQVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEA1</accession>
    <name>A0A392NEA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014914</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">10/8</strain>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026164">
        <property type="protein sequence ID" value="MCH93960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010035554">
        <property type="protein sequence ID" value="MCH97653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:(3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23309">
        <property type="entry name" value="3-HYDROXYACYL-COA DEHYROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23309:SF9">
        <property type="entry name" value="PEROXISOMAL FATTY ACID BETA-OXIDATION MULTIFUNCTIONAL PROTEIN MFP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH97653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13069" checksum="CB8EEC8D788E42EB" modified="2018-12-05" version="1" fragment="single">TSKPVKGKDAFNLGLVDSLVSPDQLVNTARQWALDILDRRRPWIASLYKADKIEPLGEARQILKFARAQARKQAPNLKHPQVCIDVIEAGIVSGPRAGLWKLKHLTYWYNQILAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NED7</accession>
    <name>A0A392NED7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heparanase-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035125">
        <property type="protein sequence ID" value="MCH97505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NED7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009505">
        <property type="term" value="C:plant-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004566">
        <property type="term" value="F:beta-glucuronidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14363:SF35">
        <property type="entry name" value="GLYCOSIDE HYDROLASE FAMILY 79 AMINO-TERMINAL DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14363">
        <property type="entry name" value="HEPARANASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19117" checksum="9699C1D6B39216BC" modified="2018-12-05" version="1">MSATYGTRTYCRQTLIGGNYGLLNTTTFNPNPDYYSALLWHRLMGGRVLSTTFYGTKKIRTYAHCAKESNGVTILFLNLDNSTTVNAQVALKFAEKPYYHLRGSQRREYHLTAKDGNLHSQIMLLNGNILSVNSDGDIPPLNPIYVDSSKPITVGPLSIVFAHIPDAAVKACS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEP3</accession>
    <name>A0A392NEP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Actin-related protein 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018523</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035177">
        <property type="protein sequence ID" value="MCH97528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000286">
        <property type="entry name" value="Actin-related protein 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8841" checksum="3D380151147D684F" modified="2018-12-05" version="1" fragment="single">VLHAIPPNEAIDTVEVIQSRANPTFVSWKGGAILGVLDLGRDAWINREDWIQNGVHVGSNRKYKDSYYLQAQAMCXMNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEY8</accession>
    <name>A0A392NEY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-methyl-6-phytylbenzoquinone methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ/MBSQ MT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036201">
        <property type="protein sequence ID" value="MCH97903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051741">
        <property type="term" value="F:2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044649">
        <property type="entry name" value="MPBQ/MSBQ_MT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031164">
        <property type="entry name" value="SAM_MPBQ_MSBQ_MT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44516">
        <property type="entry name" value="2-METHYL-6-PHYTYL-1,4-HYDROQUINONE METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44516:SF4">
        <property type="entry name" value="2-METHYL-6-PHYTYL-1,4-HYDROQUINONE METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51734">
        <property type="entry name" value="SAM_MPBQ_MSBQ_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MPBQ/MBSQ family SAM-binding methyltransferase profile" evidence="2">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="SAM motif III" evidence="1">
        <location>
            <begin position="20"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15615" checksum="41F6C5FB9757EDC4" modified="2018-12-05" version="1" fragment="single">MLFSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVHPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVXXHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVEKPVNPLVFLSRLILGAIAATYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF96</accession>
    <name>A0A392NF96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">THO complex subunit 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037104">
        <property type="protein sequence ID" value="MCH98241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000445">
        <property type="term" value="C:THO complex part of transcription export complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006406">
        <property type="term" value="P:mRNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021861">
        <property type="entry name" value="THO_THOC1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13265:SF0">
        <property type="entry name" value="HPR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13265">
        <property type="entry name" value="THO COMPLEX SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9330" checksum="337707A6CEACE425" modified="2018-12-05" version="1">MYLSFFLTQVYCWKGLRLSARQDLEGFSKFTEYGIEGVVPPELLPPDVRSKYQAKPTDRSKRGKKEEAKNTANQVEENQVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFB6</accession>
    <name>A0A392NFB6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018831</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036041">
        <property type="protein sequence ID" value="MCH97835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF57">
        <property type="entry name" value="OS12G0499874 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="2">
        <location>
            <begin position="166"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="37"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="262" mass="30184" checksum="00F95B461E774553" modified="2018-12-05" version="1" fragment="single">LWFNTSYHASTGQTPYEIVYGRAPPVITRWLQGETRVEAVQKELLDRDEALRQLRAQLQRAQDRMKQMADRKRCDKSFEVGEWVFVKLRAHRQQSVVCRIYAKLAAKYYGPYPIVARVGAVAYQLRLPEGSRVHPVFHISLLKKAVGTYHEEEKLPELEGENGVLIEPERVLASRVVQVQNEKVDQVLIQWKGQGAEEATWEDAIMIRSQFPEFCLVDKTIVSGGSIVRTRIQNNDLDTSLAHDAVGPREWIVYSRRKNTIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG39</accession>
    <name>A0A392NG39_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">glycerophosphodiester phosphodiesterase</fullName>
            <ecNumber evidence="1">3.1.4.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0019514</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a sn-glycero-3-phosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12969"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:83408"/>
            <dbReference type="EC" id="3.1.4.46"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.46" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010037795">
        <property type="protein sequence ID" value="MCH98511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008889">
        <property type="term" value="F:glycerophosphodiester phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046475">
        <property type="term" value="P:glycerophospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051578">
        <property type="entry name" value="GDPD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22958:SF1">
        <property type="entry name" value="GLYCEROPHOSPHOCHOLINE PHOSPHODIESTERASE GPCPD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22958">
        <property type="entry name" value="GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0319">Glycerol metabolism</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="5">
        <location>
            <begin position="1"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00047512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH98511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18489" checksum="51AD6C9D7C3259D3" modified="2018-12-05" version="1" fragment="single">IFSTFQPDAAVLVRKLQSTHPVFFLTNGGCEIYEDLRRNSXXXXLKLCLESGLEGIVSEIKGIFRNPGAVSKIKESNLSLLTYGKLNNVPEAVYMQHLMGIDGVIVDFVQEITEAVADMVKPTKNGEEEGLTEEGIEKVEVNKSKPQFSQLELSFLYKLIPQLLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG42</accession>
    <name>A0A392NG42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035121">
        <property type="protein sequence ID" value="MCH97504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5903" checksum="A3A640053CEEB848" modified="2018-12-05" version="1">MGGFRITSTVTVALTNSKHKEPAAERKDPELQNGGRENETTERKETEVKPYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH12</accession>
    <name>A0A392NH12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036010">
        <property type="protein sequence ID" value="MCH97824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6967" checksum="5FD2DD8EA42A9DE0" modified="2018-12-05" version="1">MRKSKIWMRKSWMXNEEIEDLNEEIEVPDDDIVVDLNDLLPEDPFGMSIVVPPLESIVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM64</accession>
    <name>A0A392NM64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042461">
        <property type="protein sequence ID" value="MCI00186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF23">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="36106" checksum="C4FA4A6FA079B680" modified="2018-12-05" version="1" fragment="single">EVISGSMDMEGGFVSRSPLLDGTNYDYWKTRMMAFLKSMDSQTWKAIIKGWEHPVWRGTTELKPEENWSKKEDELALGNFKALNALFNGVDRNMFRLIKKCIVAKDAWEILKTTHEGTSKVKMSRLQLLTTKVENFRMKEDECIHDFHMNVLDFANSFDSLGEKIAEEKLVRKILRSLPKRFDMKVIAIEEAQDIPSMKVEELIGSLLTFELAINERSEKKNKSITFNSNTDDNEIQCDMETNERISNDIIDLGKQFNKVLEMMDRKTRTKEKPNQGKYEPGEETVKHVAAFIGRCESDEDSCDEDVSYEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSH5</accession>
    <name>A0A392NSH5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023807</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050130">
        <property type="protein sequence ID" value="MCI02773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="88" mass="9932" checksum="2B3A2A1876DC8896" modified="2018-12-05" version="1" fragment="single">AELXESFWGEALSTVVHVLNLSPCMSLQYEVPGMIWSDKDVSYDHLHVFGCKASVKIHQCEFIGYGLDEVGYKFYDPVMKLVTTDCPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTZ2</accession>
    <name>A0A392NTZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049889">
        <property type="protein sequence ID" value="MCI02690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7419" checksum="426C115B88B60792" modified="2018-12-05" version="1">MRSLSLDTTTLLHLHRRFSKMRRTTTNININSTIGKKSLATREKWRRIDDGGVEDGDDEDSMKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU98</accession>
    <name>A0A392NU98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter B family member 20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0023710</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049845">
        <property type="protein sequence ID" value="MCI02676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NU98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222:SF52">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY MEMBER 20-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="1"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI02676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17125" checksum="43D5F46B86EE8887" modified="2018-12-05" version="1" fragment="single">YTFLPLLLFLLQLALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXT0</accession>
    <name>A0A392NXT0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0025634</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055867">
        <property type="protein sequence ID" value="MCI04587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF44">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI04587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28520" checksum="07F06A27BFCA26F4" modified="2018-12-05" version="1" fragment="single">MCDASDYAIGAVLGQRVDKKLHAIYYASRTLDPAQMNYATTEKELLAVVFAVDKFRPYLIGSKIIIYTDHAAIRYLLSKKDAKPRLLRWILLLQEFDLEILDKKGAENVVADHLSRIEGIEPESVPINDDFPYERLIAQIESTLAKYATMQPIGDAFSIKNNLPWYADFVNYLAAGVLPPDLTYQQKKKFFHDLKNYYWDKPLLFRRGPDGVFRRCVPEEEIDEIISHCHSSPYGGHASTSKTCAKILQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P307</accession>
    <name>A0A392P307_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ADP-ribosylation factor GTPase-activating protein AGD4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0027416</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061571">
        <property type="protein sequence ID" value="MCI06357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P307"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6473" checksum="D12DA83D0B51F8B1" modified="2018-12-05" version="1" fragment="single">KLAKRIQEYRTQAELDNTEPMLGADGTHPVGLHSFKSFEAGVQSATKGEASNLHFLVDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P391</accession>
    <name>A0A392P391_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-ureidopropionase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0027280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061150">
        <property type="protein sequence ID" value="MCI06222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P391"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003837">
        <property type="term" value="F:beta-ureidopropionase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033396">
        <property type="term" value="P:beta-alanine biosynthetic process via 3-ureidopropionate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050345">
        <property type="entry name" value="Aliph_Amidase/BUP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43674:SF2">
        <property type="entry name" value="BETA-UREIDOPROPIONASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43674">
        <property type="entry name" value="NITRILASE C965.09-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="2">
        <location>
            <begin position="57"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI06222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20008" checksum="01EEFF6CAAFBF1C8" modified="2018-12-05" version="1" fragment="single">MFLQEVNRLLTGLNCGKELEAIALPESATSLSATHGFDLQAYSFHADKEVIREPRVVRVGLIQNSIALPTTAHFVDQKKAIFEKVKPIIDAAGSSGVNILCLQEAWMMPFAICTRDKRWCEFAEPVDGESTKFLRSYALKYNMVIISPILERDMNHGEVIWNTAVVIGNHGNIIGIHRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCZ4</accession>
    <name>A0A392PCZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fructokinase-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070078">
        <property type="protein sequence ID" value="MCI08725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47826">
        <property type="entry name" value="OS03G0164700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47826:SF1">
        <property type="entry name" value="OS03G0164700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbohydrate kinase PfkB" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13674" checksum="62DF2D80AA997741" modified="2018-12-05" version="1" fragment="single">IVDSVGCGDSFVAAIAYGFIHNLPMVNTLAIANAVGAATAMGCGAGRNVASLEKVLHILKSPNLNEDDEFWTEILEKKVVDQEVTRLSNIVMNGNRNHLNFVPFDKVASELLTKFEFPQTVENVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR39</accession>
    <name>A0A392UR39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter B family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0099774</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952047">
        <property type="protein sequence ID" value="MCI78504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI78504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3336" checksum="96FC86025BE7B9F8" modified="2018-12-05" version="1" fragment="single">MSYFDTEATSGEVIGRMSGDTILIQDAIGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR60</accession>
    <name>A0A392UR60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099788</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952457">
        <property type="protein sequence ID" value="MCI78518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4823" checksum="B3AF3BF5F6521795" modified="2018-12-05" version="1" fragment="single">MVVDDVWRIGKAIEVKFKGDNVNMFNVLSRAGKGKKENSGQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUR1</accession>
    <name>A0A392UUR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100123</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960334">
        <property type="protein sequence ID" value="MCI78852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4568" checksum="4904EF6B1EDFF979" modified="2018-12-05" version="1" fragment="single">VFGHGIGVLFFAQQRWGRWFSTLSSQSGSLTGLALLAVAANLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV25</accession>
    <name>A0A392UV25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964663">
        <property type="protein sequence ID" value="MCI79033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3142" checksum="98074C209DBFAFDD" modified="2018-12-05" version="1">MPLFFIQRCPRLTRPTAPPVETQGKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW59</accession>
    <name>A0A392UW59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010966562">
        <property type="protein sequence ID" value="MCI79121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8491" checksum="8FEE7DAC4880DFF2" modified="2018-12-05" version="1" fragment="single">NHHRIGEKKVRGAHRRIFEYERHPRQDKVQIPASSILSRGTPRRISKRQHPSHPSRHGKLRGSSSPRRSGQLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWX6</accession>
    <name>A0A392LWX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="22">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">A2U01_0000197</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">cv. 10/8</strain>
            <tissue evidence="22">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000115">
        <property type="protein sequence ID" value="MCH79448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="17" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="20">
        <location>
            <begin position="640"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="21">
        <location>
            <begin position="1158"/>
            <end position="1322"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="19">
        <location>
            <begin position="1466"/>
            <end position="1502"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="263"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="1528"/>
            <end position="1547"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="17">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="18">
        <location>
            <begin position="272"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="312"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="22">
        <location>
            <position position="1547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="MCH79448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1547" mass="175871" checksum="414BEE8D013A7820" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY50</accession>
    <name>A0A392LY50_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0000638</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010000456">
        <property type="protein sequence ID" value="MCH79877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF90">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="3">
        <location>
            <begin position="322"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="709"/>
            <end position="874"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH79877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="878" mass="100047" checksum="46A527EC72205499" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M090</accession>
    <name>A0A392M090_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001324">
        <property type="protein sequence ID" value="MCH80663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M090"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000305">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046849">
        <property type="entry name" value="E2_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF347">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20430">
        <property type="entry name" value="Eplus_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="91"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="192"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="329"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="DYW" evidence="4">
        <location>
            <begin position="407"/>
            <end position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="499" mass="56343" checksum="6946544FEEFBEC0C" modified="2018-12-05" version="1">MVEYGTEFSAVTFSIALILASSLSLVEVGRQLHGRVLKFGLNSDGFIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKAGMVSWSSMVSGYVWNGKYEDGMKIFRSMVRELVVVDIRTVVTIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDAWMTFSRINEPNVVLWTSMISGCALHGQGRNAISLFEGMLNQGVIPNEVTFVGVLNACSHVGLIEEGCSYFKMMKDTYHINPEVEHYTSMVNLYGRSGHLIEAKNFIFENGISHLTSVWRSFLSSCRLHKNVEMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHRWDEAAKVRSLMHQRGVKKQPGQSWIQLKDQIHTFIVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDVKLVMQDVEEEQREVLISHHSEKLALVFGIINNSQRTPIRIMKNLRICTDCHNFIKYASQLLEREIIVRDTHRFHHFKQGSCSCGDYW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0J9</accession>
    <name>A0A392M0J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator ATRX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001440">
        <property type="protein sequence ID" value="MCH80749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34380">
        <property type="entry name" value="BNAA03G12380D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34380:SF1">
        <property type="entry name" value="OS01G0221300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="259" mass="28879" checksum="149BD69196507C0E" modified="2018-12-05" version="1" fragment="single">KEISVDELANVVDDDADGGDDNDDIPISQVIRMKKACRRRLKPLKKCVSKSGDDKTPSCIPTNDDAHDDVESEEDLSESEEGNLNDFIVDDFDVSNCEVTSSKSEDEGCNGDVDDSDLQDVSDEEIDIDFGKDPLLCMKAVCVINREQIAKEQMYKYTEPFCYSGRGFNKVDAARGNTLAWFITDGNPQGDIKKTVKELKEYNSKGVKICKLLAKRYWKQLYFQEECGSLFPLTSAATAVEEMGRPGLLARSDVELNNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0K1</accession>
    <name>A0A392M0K1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Vacuolar protein sorting-associated protein 26A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001277</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the VPS26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001130">
        <property type="protein sequence ID" value="MCH80508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.640">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014752">
        <property type="entry name" value="Arrestin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028934">
        <property type="entry name" value="Vps26-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12233">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING 26 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03643">
        <property type="entry name" value="Vps26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="19519" checksum="5C0CF45A66261469" modified="2018-12-05" version="1" fragment="single">MYFDRGNFYDFTSLVRELDVPGDIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTINRGYAGSIVEYQDFVVRNYSPLPPINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1L9</accession>
    <name>A0A392M1L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Root phototropism protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0002016</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002034">
        <property type="protein sequence ID" value="MCH81232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1L9"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.710.10:FF:000168">
        <property type="entry name" value="BTB/POZ domain-containing protein At1g03010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00225">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50097">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="BTB" evidence="7">
        <location>
            <begin position="27"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="NPH3" evidence="8">
        <location>
            <begin position="182"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="231"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="546"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="552"/>
            <end position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH81232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="576" mass="63891" checksum="A431FDA2046CE0B2" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2B9</accession>
    <name>A0A392M2B9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002237</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002313">
        <property type="protein sequence ID" value="MCH81450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF463">
        <property type="entry name" value="REVERSE TRANSCRIPTASE TY1_COPIA-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="93"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="561" mass="62945" checksum="5136B953FB0AF6BA" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2H6</accession>
    <name>A0A392M2H6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001982</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002003">
        <property type="protein sequence ID" value="MCH81198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="402"/>
            <end position="715"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="803"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="803" mass="91603" checksum="D03D1DDDFF610223" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3D6</accession>
    <name>A0A392M3D6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arogenate dehydratase/prephenate dehydratase 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002563</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002749">
        <property type="protein sequence ID" value="MCH81771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3D6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047769">
        <property type="term" value="F:arogenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04905">
        <property type="entry name" value="ACT_CM-PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21022:SF42">
        <property type="entry name" value="AROGENATE DEHYDRATASE_PREPHENATE DEHYDRATASE 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21022">
        <property type="entry name" value="PREPHENATE DEHYDRATASE P PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="54"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14160" checksum="378EFBCFA56D2855" modified="2018-12-05" version="1" fragment="single">MRELVRRKLSTSIEALMAMPGSELYPDDSDNVTRFLVLAREPILPGIDRTFKTSIVFSLEEGPGILIKALAVFALRQINLSKVSCRLGGELQYLLWKYFDYLFYVDFEASMADQNAQNALRHLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3E3</accession>
    <name>A0A392M3E3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002588</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002776">
        <property type="protein sequence ID" value="MCH81796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3E3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF11">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="102" mass="11100" checksum="1C0C7A8509BD90F4" modified="2018-12-05" version="1">MCPPNLVASTRGSNMSWSPPPKDYLKLNVDAHLLGNGSWGLCMILRGEDESNVGAATMIVMGFEDASLAEALGLREAMAMEDRFQLDRVLFKMDAKVIVVAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3R2</accession>
    <name>A0A392M3R2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002729</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002982">
        <property type="protein sequence ID" value="MCH81935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="205"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="217"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="247"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="295"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="321"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="334"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="382"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="407"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="423"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="524" mass="58858" checksum="B107828ACB1A82C3" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4C7</accession>
    <name>A0A392M4C7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mediator of RNA polymerase II transcription subunit 25-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003417">
        <property type="protein sequence ID" value="MCH82257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12433">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12433:SF12">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22785" checksum="B44B35D33510630D" modified="2018-12-05" version="1">MFPDFSRGLMGNFAGDPIGQHLESYNQYLRNNNIVGYNPPAFGDNGWLRAIPSFSSPYLSSNLYVPSIAELPNYIHTWEGNVAGKINSSRFTVMKAKAYRKTTASITLTFRWGNRLEISHFMPQKAVNHTKRFSEPIDYVFFHVLKYNSVDLYKHLKNKYLGARIDLQYQTIILTPAEREHYYVGTIFPGDTLFIEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M507</accession>
    <name>A0A392M507_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Trafficking protein particle complex subunit 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003736">
        <property type="protein sequence ID" value="MCH82472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M507"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058565">
        <property type="entry name" value="Ig_TRAPPC9_Trs120_1st"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058564">
        <property type="entry name" value="TPR_TRAPPC9_Trs120"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013935">
        <property type="entry name" value="Trs120_TRAPPC9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21512">
        <property type="entry name" value="TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21512:SF5">
        <property type="entry name" value="TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26254">
        <property type="entry name" value="Ig_TRAPPC9-Trs120_1st"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26280">
        <property type="entry name" value="Ig_TRAPPC9-Trs120_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26251">
        <property type="entry name" value="TPR_TRAPPC9-Trs120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Trs120/TRAPPC9 TPR region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Trs120/TRAPPC9 first Ig-like" evidence="2">
        <location>
            <begin position="224"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF26251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF26254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="448" mass="48338" checksum="C31E63D11869D4F3" modified="2018-12-05" version="1" fragment="single">RELAKEVVELLTTAADGAKSLIDASDRLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSISDHSIHNKGIGSDKADAGKIYHQSVVSLFESQWSTIQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALLNSSERLPPGTRCADPALPFIRVHSFPVHPTQMDIVKRNPAREDWWAGAAPSGPFIYTPFSKGDTSNIKKQELIWIVGEPIQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPVSISLLPNSSKVITLSGIPTSVGPVSIPGCIVHCFGVITEHLFKEVDNLLLGAAQGLVLSDPFRCCGSPKLKNVSVPSISVVPPLPLLISHVVGGDGAIILYEGEIRDVWISLANAGTVPIEQAHISLSGKNQDSVISYSSETLKSSLPLKPGAEVTFPVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6K0</accession>
    <name>A0A392M6K0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">xylose isomerase</fullName>
            <ecNumber evidence="2">5.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0003874</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>alpha-D-xylose = alpha-D-xylulofuranose</text>
            <dbReference type="Rhea" id="RHEA:22816"/>
            <dbReference type="ChEBI" id="CHEBI:28518"/>
            <dbReference type="ChEBI" id="CHEBI:188998"/>
            <dbReference type="EC" id="5.3.1.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the xylose isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.5" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010004589">
        <property type="protein sequence ID" value="MCH83060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009045">
        <property type="term" value="F:xylose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001998">
        <property type="entry name" value="Xylose_isomerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48408">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48408:SF1">
        <property type="entry name" value="XYLOSE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="Xylose isomerase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51415">
        <property type="entry name" value="XYLOSE_ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0859">Xylose metabolism</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH83060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7408" checksum="2856A178C97C3848" modified="2018-12-05" version="1">MFDQKDGALAELVRKRYQSFDTEIGAQIEAGKADFDLLAKKVKEWGEPKVASAKQELAEMIFQSAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6M5</accession>
    <name>A0A392M6M5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chromodomain-helicase-DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003764</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004434">
        <property type="protein sequence ID" value="MCH82951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6M5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032308">
        <property type="entry name" value="TDBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47025:SF7">
        <property type="entry name" value="ACYL-COA N-ACYLTRANSFERASE WITH RING_FYVE_PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47025">
        <property type="entry name" value="AUTOIMMUNE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16135">
        <property type="entry name" value="TDBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tify" evidence="3">
        <location>
            <begin position="74"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11586" checksum="A134F20E6C999542" modified="2018-12-05" version="1">MYVNQTTDEWKRVVKKPSTYTYNSGILQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDVEISPSQFEAHAGMAARRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7C4</accession>
    <name>A0A392M7C4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005085">
        <property type="protein sequence ID" value="MCH83377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7C4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2842" checksum="FCFB3BBE37469C03" modified="2018-12-05" version="1" fragment="single">MVVKAFVAIEKLGAAIVTVNRIQQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7G7</accession>
    <name>A0A392M7G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heterogeneous nuclear ribonucleoprotein A/B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005149">
        <property type="protein sequence ID" value="MCH83410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="9393" checksum="2AC90105E01CD9A0" modified="2018-12-05" version="1">MMPQYGAPPNSYGQPYSNQVPSAGGYGPGIGGGAPQYGGPVAGPGPVSGQRAPPPSVGGYPDGSQYGYPSQQPMPIQRPPPGGMYQGVPPPYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M814</accession>
    <name>A0A392M814_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003534">
        <property type="protein sequence ID" value="MCH82334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M814"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13027" checksum="2D0959B0A5D430D5" modified="2018-12-05" version="1">MSRRVVSFLRINLDGLGNRLSAWSWVPDWSGKRARRRASSPQLEPPIASGVLSHGTAMLELVVRVILVEQSVPARCLLGNFLSPKVLEVVRSIVCLTAYTIRALPIGGELAFVGVFGVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8K8</accession>
    <name>A0A392M8K8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003332</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003804">
        <property type="protein sequence ID" value="MCH82524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8K8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="22"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="305"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="157"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="305"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="324" mass="35729" checksum="5A9D1A69E6ACC3AF" modified="2018-12-05" version="1">MTSAQARLRQAKNAKKKVAAILGTSSSIPSGTPSGKASPAPSIEIIKEKRGRDEEMEDVSSRKNPKLDTAGDVATGLHRLTPGQPADDFVLLPAFGHTPLFDGQTKVIVSDAKRTILEDMGPDSIRNEIANSLAAVFKLLEVVTFLNGWECQYLKERDAAKKKVTELGQQLREMTAAFDDYKNKHALQLDLIKDLEKTEVKIAEMVKERDALVEQVKGLNEKVAGLEEKMKTVEVTLISQKEQKLDPAGRYAGSDRAELIKKIIAIEEAMIAAANSQFHNVVVQLRILNPNVDFAVDGLNEDKEVREGRIATPRDDDHSPDEDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8L3</accession>
    <name>A0A392M8L3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutathione S-transferase</fullName>
            <ecNumber evidence="3">2.5.1.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004656</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Is involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>RX + glutathione = an S-substituted glutathione + a halide anion + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16042"/>
            <dbReference type="ChEBI" id="CHEBI:17792"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:90779"/>
            <dbReference type="EC" id="2.5.1.18"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
            <location evidence="3">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GST superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.18" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010005825">
        <property type="protein sequence ID" value="MCH83830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8L3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03185">
        <property type="entry name" value="GST_C_Tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03058">
        <property type="entry name" value="GST_N_Tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1050.10:FF:000018">
        <property type="entry name" value="Glutathione S-transferase U20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.30.10:FF:000014">
        <property type="entry name" value="Tau class glutathione S-transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045074">
        <property type="entry name" value="GST_C_Tau"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045073">
        <property type="entry name" value="Omega/Tau-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11260:SF547">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11260">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13410">
        <property type="entry name" value="GST_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01152">
        <property type="entry name" value="Main.3:_Omega-_and_Tau-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG00358">
        <property type="entry name" value="Main_(cytGST)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="GST C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="4">
        <location>
            <begin position="5"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="5">
        <location>
            <begin position="90"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00047960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU369102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="25332" checksum="5CB083F3430D96C4" modified="2018-12-05" version="1">MSKGDNVVLLDFWASPFCARVKIALEEKSVKHIDNEEDLFGKKSELLLISNPIHQKVPVFLHNGKPVLESAIIVNYIDEVWPENSLLPANAYDVAQARFWADFIDKKVFDTGRSIWANNGEEREVGTRDFLEVLKHLEEALGEKDYFGGDTFGYVDIIAIPHSAWFLAYEKLGGFKVEDHSPKISAWIKRSLERESVKKVLPDPEKVYQFVHHFRKMSGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8S9</accession>
    <name>A0A392M8S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004662</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005835">
        <property type="protein sequence ID" value="MCH83836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="215"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="238"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="267"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="284"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="344"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="364"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="393" mass="44403" checksum="31F18E88CCE4F023" modified="2018-12-05" version="1" fragment="single">MEQPVDFKTLRANGYDVKKFFEDQGWMGYFEMINGPVYTVLVKDFWPRCDVVTQEDADQTDIRSGVTGYEVTLTQSIIAQVLKLPNQGIFKTFTPTSGKLSNFVSRIAMQCYIDEEAEPTNKVNDMKLSREFKRLKLMIFWKNRENHSSMDILYHTRAPIPKQPPTLFSNEPKEVVLEYMRIMKDEGVIITGADIAQAYPEDKQEKMKRIVKVKQEKVDEETTSGNTSASRAGASEAKSTEEKKASEATDTEDIGASEAKDTENSKGKAVAKSVAKPVSEKKEKAFKKPRSVKKRAPRIPRRYVVSDSDEEIEEEQPMFKRKRTEQAEPEKAQSASEDMDTDADTGNPNSINDNVPVFQAHTPPISSSLNQPIPETNDDIDPTLLQPINIIHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M907</accession>
    <name>A0A392M907_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005496">
        <property type="protein sequence ID" value="MCH83623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M907"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008480">
        <property type="entry name" value="DUF761_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33450:SF12">
        <property type="entry name" value="COTTON FIBER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33450">
        <property type="entry name" value="EMB|CAB67623.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05553">
        <property type="entry name" value="DUF761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7346" checksum="9CABE6E72429CAD0" modified="2018-12-05" version="1">MDFDGSVIDKVKNCKEEAGKEFKLEDDIDEVADLFIRRFKRNIILQKQDSLKRKREMVQKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9T5</accession>
    <name>A0A392M9T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDSL' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006155">
        <property type="protein sequence ID" value="MCH84031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001087">
        <property type="entry name" value="GDSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835:SF555">
        <property type="entry name" value="GDSL-LIKE LIPASE_ACYLHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835">
        <property type="entry name" value="ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00657">
        <property type="entry name" value="Lipase_GDSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18736" checksum="EFDB42DCE1CCA244" modified="2018-12-05" version="1">MLLSLRVMIVKIETYVMLFIGTEPPFISGLPRSGEFSKALYTIDIGQNDLAYGSQHTSEDQVISSIPDILSQFSQAVQQLYNEGARVFWIHNARPIGCLPYDYIYYQHKEGNLGANGCVKPHNEIAQEFNRQLKDQVFQPRRKPPLAKFTYVDVYTAKYKLQGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA98</accession>
    <name>A0A392MA98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protease Do-like 10 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005262</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006800">
        <property type="protein sequence ID" value="MCH84430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041517">
        <property type="entry name" value="DEGP_PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046449">
        <property type="entry name" value="DEGP_PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45980">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45980:SF9">
        <property type="entry name" value="PROTEASE DO-LIKE 10, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17815">
        <property type="entry name" value="PDZ_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Protease Do-like PDZ" evidence="4">
        <location>
            <begin position="86"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH84430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="19249" checksum="69FA1D8607606B6D" modified="2018-12-05" version="1" fragment="single">MTGVLVNKINPLSDAYKVLKKDDIILSFDGVPIANDGTVPFRNRERITFDHLVSMKKLNEKAVVRVMRDGQELELSIILRPIQPLVPVHQFDKLPSYYIFAGLVFVPLTQPYLHEYGEDWYNASPRRLCERALRELPKKENQQLVILSQVLMDDINAGYERLADLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB90</accession>
    <name>A0A392MB90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NB-ARC domain disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004888</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006194">
        <property type="protein sequence ID" value="MCH84058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF57">
        <property type="entry name" value="OS02G0478300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="3">
        <location>
            <begin position="77"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="428" mass="48841" checksum="3CB42D0E6130C7BD" modified="2018-12-05" version="1" fragment="single">NRVIRQWIAEGFVKEEKGKTLEEIAEGYLTELIHRSLVQVSSIGVDGKAEACCVHDQIREMILEKLSPPFFENRIPKNYKLLRVLDCESTLLLKVPENLGRFVHLKYLSLGFAIKFEIPEYIGMLRSLETLNVSAAVIGLPKEISKLRKLRHLIGRKVSLIQLEDGIGEMTSLQTLHYVDLGMDGAEKIIKGLGKLNQMRNLGLVNVRREYGIILSSSINEMQHLEKLYIASRWEEGYEVIDLDLISLPTKLQKLTLYGTLQKLPEWIPKLQNLVQLTLSESRLTEDPLKSLNCLQHLLSLTIQYSAYKGLCLHFEDGWFQKLKELNVINCNEVREVIIDKGAMPSLKKLNFRVLWRLENIPTGIQHLEKLEVLCISDTSDELVHNISTEDWNSMQHVPLVQISSLSGIYIPNXTQGVRNHALPYSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBC0</accession>
    <name>A0A392MBC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">UDP-N-acetylmuramyl-tripeptide synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005571</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MurCDEF family. MurE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007292">
        <property type="protein sequence ID" value="MCH84736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016881">
        <property type="term" value="F:acid-amino acid ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="entry name" value="Mur ligase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="entry name" value="Mur-like, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.10">
        <property type="entry name" value="MurE/MurF, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005761">
        <property type="entry name" value="UDP-N-AcMur-Glu-dNH2Pim_ligase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01085">
        <property type="entry name" value="murE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23135">
        <property type="entry name" value="MUR LIGASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23135:SF4">
        <property type="entry name" value="UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="MurD-like peptide ligases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="MurD-like peptide ligases, peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="MurE/MurF N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="591"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="domain" description="Mur ligase N-terminal catalytic" evidence="4">
        <location>
            <begin position="240"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="Mur ligase central" evidence="6">
        <location>
            <begin position="329"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="domain" description="Mur ligase C-terminal" evidence="5">
        <location>
            <begin position="552"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="31"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH84736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="623" mass="69158" checksum="F4299552176E4352" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBW9</accession>
    <name>A0A392MBW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005784</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007651">
        <property type="protein sequence ID" value="MCH84946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="531" mass="58862" checksum="36C8C7A594C463F1" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCB9</accession>
    <name>A0A392MCB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008011">
        <property type="protein sequence ID" value="MCH85160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="24992" checksum="282AFBC5DF30AF7F" modified="2018-12-05" version="1" fragment="single">VQAHTSRRCSSLSSLPVRRDSRLARDPSPCPQKCWCYRHEEMLVKICIYSCELLEAITMSSSGDAWSVRWDLKGQTFHLLLPHVWATKRCLYGLGERLMVFDQDRWIEINGGDAMRRVLSISLLCVVAATSQVPLETKFLFLPKAFHLLDLSCFMIFIRQKSTGLGFTPMEDDELLGKLKNNDEHMNFWKLCVGENINVSLLVISTSLSGRASLLLPVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCY3</accession>
    <name>A0A392MCY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ycf20-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005803</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ycf20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007681">
        <property type="protein sequence ID" value="MCH84965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007572">
        <property type="entry name" value="Uncharacterised_Ycf20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33787">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33787:SF4">
        <property type="entry name" value="YCF20-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04483">
        <property type="entry name" value="DUF565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="152"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21138" checksum="76523D3B69523D48" modified="2018-12-05" version="1" fragment="single">MACQMGSMNLQWRLSLTKNEGCKRSFIALATSRIHRCYCEPRFSGLTPNVSVKSLPFFQSRFLGRRAGWKVALALNTDGLSDNGEQQSLNDSGSSLGGTRLGRILSAGGRQLLDKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLIYKKVPTARTGRLQSFLVMVNYWKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEC0</accession>
    <name>A0A392MEC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alphaalpha-trehalose-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009229">
        <property type="protein sequence ID" value="MCH85840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003825">
        <property type="term" value="F:alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004805">
        <property type="term" value="F:trehalose-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001830">
        <property type="entry name" value="Glyco_trans_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003337">
        <property type="entry name" value="Trehalose_PPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788:SF85">
        <property type="entry name" value="ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788">
        <property type="entry name" value="TREHALOSE-6-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00982">
        <property type="entry name" value="Glyco_transf_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02358">
        <property type="entry name" value="Trehalose_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="277" mass="31374" checksum="8C320FF0E09C96F0" modified="2018-12-05" version="1" fragment="single">FAGAAQSLGAGALLVNPWNISKVAEAIAKALNMPSAEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQIPPRLPIPKAIQQYLKSTNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKQPLTQLCSDPNTTVVVLSGSGRTLLDENFREYNTWLAAENGMFLNPSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCSGPISSASVEVVQGSRSVEVRVAGITKVKFHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEH0</accession>
    <name>A0A392MEH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006351</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008633">
        <property type="protein sequence ID" value="MCH85505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16641" checksum="645F125F751EFF38" modified="2018-12-05" version="1">MWNCKSSIFLPSFSELRNPALRCEKAESSGAKIVNPPPFAVMSCEFMLVMISVVFRRRVRMVNVFAFLRIFVMSSGVESVSGEVGSVGTNGFDDVGDDAFGAGACFGDAXGAVAVAAMLGEYNEENMSXKSEKENIICFIFGLVIEIIMKELM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFJ3</accession>
    <name>A0A392MFJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007131</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010056">
        <property type="protein sequence ID" value="MCH86277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="144"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19643" checksum="3035AA03F2A5BA07" modified="2018-12-05" version="1">MTGKVDSLTAKEDWNWLWRVHAPPKAKHLLWPIFKGFFHLALCTASTVWHGKRHYYGYCRYEDRDRCSGEVCNAGVGNVDRNNRNNNVWNNAKESGRTLGIKELCHWSEWKRKYRPCTSAGLSRPNSNSHKSHSGKNRDKVGTNVMSTQDSTMTSTKQQQDGVSRAVCIDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFT2</accession>
    <name>A0A392MFT2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">alpha-amylase</fullName>
            <ecNumber evidence="4">3.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">1,4-alpha-D-glucan glucanohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0006787</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endohydrolysis of (1-&gt;4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1-&gt;4)-alpha-linked D-glucose units.</text>
            <dbReference type="EC" id="3.2.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.1" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010009423">
        <property type="protein sequence ID" value="MCH85935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004556">
        <property type="term" value="F:alpha-amylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012850">
        <property type="entry name" value="A-amylase_bs_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43447">
        <property type="entry name" value="ALPHA-AMYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07821">
        <property type="entry name" value="Alpha-amyl_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00810">
        <property type="entry name" value="Alpha-amyl_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51011">
        <property type="entry name" value="Glycosyl hydrolase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-amylase C-terminal beta-sheet" evidence="9">
        <location>
            <begin position="126"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH85935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="20999" checksum="563A9894E4E23D94" modified="2018-12-05" version="1" fragment="single">LHLISGDDWGGAPDIDHTNPKVQQELSDWMNWLKTEVGFVGWRFDMVVGYAPRFTKTYVEKTSPDFAVGELYRSVSLGSDGKPLANQDKHRETLVNWVNDAGGVFYDHYIEWGLMEPIKKLTEIRKRNGITATSSVNILAAENDLYMAKIDNKIIVKIGPKLDLGNLLPSNAEVATSGQDYAVWEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGL8</accession>
    <name>A0A392MGL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007043</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009893">
        <property type="protein sequence ID" value="MCH86189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="100"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="13949" checksum="369DC1D05FB2196C" modified="2018-12-05" version="1">MSQTTSVPPAFQSIKSLPPEFKFDNNRNSGIVEKHGKVKLRSTDLIESNGRENGATVGKVSKEADSRAGGMDLFDEESPYGGNGESFEDRPLYANEDSISASLPQPSISTSSSESRWSDTNAYASKKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGM6</accession>
    <name>A0A392MGM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Xanthine dehydrogenase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0007198</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the xanthine dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010163">
        <property type="protein sequence ID" value="MCH86343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.365.10:FF:000003">
        <property type="entry name" value="Aldehyde oxidase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.50">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.365.10">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45444:SF3">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="MoCoBD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="Molybdenum cofactor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="8" id="KW-0274">FAD</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde oxidase/xanthine dehydrogenase first molybdopterin binding" evidence="13">
        <location>
            <begin position="149"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00034078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH86343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="320" mass="35679" checksum="82D0EB5165E7DC93" modified="2018-12-05" version="1" fragment="single">VIGVVVADTHENAKTAARKVHVEYEELPAILSIQDAINARSFHPNTEKHMSKGDVDHCFQSGKCDRIIEGEVQIGGQEHFYLEPNSSVIWTLDGGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAVSVGFTNEGKVLALDLEIYNNAGNSLDLSLAILERAMFHSDNVYEIPNVRIMGKVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNMSPEVIREINFQGEGSLLHYGQILEHCPLSQLWNELKLSCDFVKTREEVDQFNAHNRWKKRGIAMVPTKFGISFTTKFMNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH53</accession>
    <name>A0A392MH53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010296">
        <property type="protein sequence ID" value="MCH86425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF483">
        <property type="entry name" value="PEPTIDE SYNTHASE GLIP-LIKE, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12920)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24516" checksum="A4F8F897B00CC5CC" modified="2018-12-05" version="1" fragment="single">NEEKVDSTMFRQMVGSLRYVCNSRPDICYSVSVISKFMHDPRKPHLIAAKRIFREAHQVXDGDWCGDITDKRSTSGYVFKFNNVAISWCTKKQPVTALSSCEAEYIAGTFATCQAMWLDSVMKELKCEPVKPLILRIDNKSAISLAKNPISHGRSKHIDTRFHFIREQVTNGMVEVQYCPTEVQLADGFTKAVKLDRFEFLRKQLSVIKCVAVMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHC0</accession>
    <name>A0A392MHC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Polygalacturonase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0007571</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the glycosyl hydrolase 28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010809">
        <property type="protein sequence ID" value="MCH86711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004650">
        <property type="term" value="F:polygalacturonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000743">
        <property type="entry name" value="Glyco_hydro_28"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31375">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00295">
        <property type="entry name" value="Glyco_hydro_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00502">
        <property type="entry name" value="POLYGALACTURONASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6 9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0964">Secreted</keyword>
    <feature type="active site" evidence="8">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH86711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="210" mass="23053" checksum="2C4EE51FF080E8C0" modified="2018-12-05" version="1">MDGQGSSAWETNDCQKNPNCHTLPTTMKFDFITNGYIHHLHSINSKQSHFVVYGCEHMTFTRLKIIAPYDSPNTDGIKIGKSNGINITSVTIGTGDDCVAMLAGTRNVWISDVFCGPGHGISVGSLGKNDGEEDLDNIVVKNCTFSGTSNGVRIKSWAAQLKKTLIASNFLYEDIVMDNVQYPIIIDQDYCPHPTCPNQVCTLMPHLNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHM1</accession>
    <name>A0A392MHM1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycosyltransferase</fullName>
            <ecNumber evidence="4">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007453</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010010581">
        <property type="protein sequence ID" value="MCH86595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000056">
        <property type="entry name" value="Glycosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050481">
        <property type="entry name" value="UDP-glycosyltransf_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035595">
        <property type="entry name" value="UDP_glycos_trans_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048:SF45">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00375">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="438" mass="48523" checksum="9737124175B8A0A5" modified="2018-12-05" version="1" fragment="single">MKKAQLVFIPFPGLSHLVSTLELAKLLINRDNRIRITVLLMDFPHSKETDVYIKSLPISDSLNFVNLPECFVPPNTNPRAVFDALIEAQKPNVRQAVSDLINGEQHGPLAAFIIDMFCTPMIDIAKEFSVPTLVFLTSGVACLGVNFHIHTLRDRDNVDPTQLLQQTEFAIPTFANLVPSYSLPSSVLGKEWESLFMNFVRGLKNADGLIINSFEELESHAVHSFSSHPELAGLPIIYPVGPILTPEPKSKSVVEPDDIIKWLDDQPPSSVVFFCFGTSGSFDDDQVKEIAHAIENSGARFVWSLRKPQPKGAAPSDYSLSDLSLVLPEGFLDRTTQIGRVIGWASQTQILAHPSTGGFVSHCGWNSTLESIYFGVPIATWPIYAEQQTNAFELVVELKMAVEIALDYKVEFNGEPNYLLTADKIERGIRSVLDKDGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MII9</accession>
    <name>A0A392MII9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative GPI-anchored protein PB15E9.01c-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009650">
        <property type="protein sequence ID" value="MCH86054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MII9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="17345" checksum="F81F4F538BE02C79" modified="2018-12-05" version="1" fragment="single">EFKLNPAAKVFSPSFLYPTSATPSVPTAANMVYMPNSCAAANMVYIPNNSPAANMVYIPNSSPAANMVYIPNTSPPVPVATIQPEVGFNTFASQPSVPAKISQNGNLTVGNAGSGSQFSQPLQYAAHYTPVLSEPAYLQPTNSPAVMVGRSTQFVYVQQVSQVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIJ7</accession>
    <name>A0A392MIJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011162">
        <property type="protein sequence ID" value="MCH86905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="240"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="240"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="251"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="493" mass="55288" checksum="6B99290E5CFD9763" modified="2018-12-05" version="1" fragment="single">MPTRKNQSQIQVIRSMDEKIASLEADMSGVKTTLANMEQNQARLIAMFEKSLGKKIPTEEEVAADAATKETGEASVQPKEHVGNNHLSGEALTEFRRSVKKVELPLFDGEDPAGWISRAEIYFRVQETRPEVKVNLAQLCMEGPTIHFFNSLINEDEDLTWERLKEALLERYGGHGEDTEIARQAISRLFSAWIEGRDTREGAKSIGGRRSXKEEIRGKVRSLSVVGDLSRSKVLQVARAVEKETKKDTGSGYNRSSKPSYGSTRPGSHKDGDWVFVKAKESGSNIGSKAEGNGPRHDRPAQYEKKRNTTRDRGFTQLSYNEIMERKKKGLCFKCGGAFHPMHRCPDRQLKILVVDEEEEXESXGKLLAVEVEDEEEETHXEMSMMGIHQLNHHDQSKPQVIKIEGTIHEVPVVILIDSGASHNFISQNLVHKMNWSIENSSSMNIQLGDGSCSRTKGTCRNLDIDMKGLKVRVDVQLFDLGCVDVVLGVEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIU7</accession>
    <name>A0A392MIU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myb family transcription factor APL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008137</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011861">
        <property type="protein sequence ID" value="MCH87271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025756">
        <property type="entry name" value="Myb_CC_LHEQLE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046955">
        <property type="entry name" value="PHR1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31499">
        <property type="entry name" value="MYB FAMILY TRANSCRIPTION FACTOR PHL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31499:SF66">
        <property type="entry name" value="MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14379">
        <property type="entry name" value="Myb_CC_LHEQLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MYB-CC type transcription factor LHEQLE-containing" evidence="2">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="99"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20245" checksum="A44B89595B0D6701" modified="2018-12-05" version="1" fragment="single">MQMEVEKKLYEQIEVQKHLQRRIEAQGKYLQSVLTKAQEALCRHNSSPIGIRLTKDELSQLVTMVNNACPSSPFSELTETRGISLNCGKRKQNNETMCSLESSLTSSESSERKEEKSVSRLMSVDHIDDSSNEANGRKRNAEAKFDSGYVEESSYRKRCGNKLKKAKLSEEMFDLNSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIY4</accession>
    <name>A0A392MIY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012261">
        <property type="protein sequence ID" value="MCH87470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9351" checksum="855C89A2BAE6BF18" modified="2018-12-05" version="1">MIRTLATRKSDKIPFPPSNSLPKAAVSLALKILWNSNLFKFHYATALYNTSLSKFCYANDLSRNNSCLSKFCYAMTSLYDNTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJM4</accession>
    <name>A0A392MJM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Extra-large guanine nucleotide-binding protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008434</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012453">
        <property type="protein sequence ID" value="MCH87561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005834">
        <property type="term" value="C:heterotrimeric G-protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001664">
        <property type="term" value="F:G protein-coupled receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031683">
        <property type="term" value="F:G-protein beta/gamma-subunit complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007188">
        <property type="term" value="P:adenylate cyclase-modulating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000692">
        <property type="entry name" value="Guanine nucleotide-binding protein subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001019">
        <property type="entry name" value="Gprotein_alpha_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10218:SF308">
        <property type="entry name" value="EXTRA-LARGE GTP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10218">
        <property type="entry name" value="GTP-BINDING PROTEIN ALPHA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00503">
        <property type="entry name" value="G-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51882">
        <property type="entry name" value="G_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0807">Transducer</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="77"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR601019-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22391" checksum="22BB38DDEA38E906" modified="2018-12-05" version="1" fragment="single">YELITIHARGLGDNCKWLEMFEDVGLVIFCVSLSDYNQFSTDGNGCLTNKMILSRKLFETIVTHPTFEQMDFLLILNKMDEFEEKIEHAPLTQCDWFSDFHPVLSHNRPSSNNSSGINNNPSLSQLASHYIAVKFKRLYSSLTGQNLYVSLVKGLEPDSVDAALKYGKEILKWNNEKPNFSLSDDSMHSIEASSFSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJZ9</accession>
    <name>A0A392MJZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase family AAA domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007913</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011421">
        <property type="protein sequence ID" value="MCH87048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056653">
        <property type="entry name" value="DUF7751"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051701">
        <property type="entry name" value="Mito_OM_Translocase_MSP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644">
        <property type="entry name" value="AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644:SF39">
        <property type="entry name" value="AAA-TYPE ATPASE FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24933">
        <property type="entry name" value="DUF7751"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7751" evidence="3">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14844" checksum="6C292E4CBC7BAF48" modified="2018-12-05" version="1" fragment="single">MECEGLEALCVKDLTLTNENSEKIVGWALSHHLMQNSEVDADAKLVLSCDSLQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKI7</accession>
    <name>A0A392MKI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008400</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012387">
        <property type="protein sequence ID" value="MCH87529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="3">
        <location>
            <begin position="60"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="248"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="143"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="143"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="158"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="327" mass="36689" checksum="BB67E87C1DAE0A54" modified="2018-12-05" version="1" fragment="single">MGLTLLSQASIPLKFWDHSFTQAVYLINKLPTSGLPTFESPHHALFKAIPDYTQIKVFGCMCFPHLRPYNKNKLQFRSSPCIYLGISPLHKGHKCLDEHGRIYISKDVVFDETVFPYTNIFPTTSNSTNTQSPAEXVPHTIYSSSTVSTSENTSPVTQTESITTLPASSSQINKTPHTFPSPQHNTTDISTSDTPSHNNHPMVTRGKTGNLKPKSFLASLEPTSVRTAINDPQWLKAMQLEYKALMDNHTWSLVPLPPHRKAIGCKWIFRVKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILSLAVTYHWPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKU1</accession>
    <name>A0A392MKU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cellulose synthase A catalytic subunit 7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0008683</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012945">
        <property type="protein sequence ID" value="MCH87803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016760">
        <property type="term" value="F:cellulose synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030244">
        <property type="term" value="P:cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005150">
        <property type="entry name" value="Cellulose_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13301">
        <property type="entry name" value="X-BOX TRANSCRIPTION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03552">
        <property type="entry name" value="Cellulose_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>UDP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR605150-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH87803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="33182" checksum="70C8FF1B68E4DD2F" modified="2018-12-05" version="1" fragment="single">KDETRQPLSRKVAIPSGRLSPYRMMVVTRLILLILFFEYRIFHPVPEAIGLWFISVSCEIWLALSWMVDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFVTTADPIKEPPLVTANTILSILALDYPSHKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSVEPRAPEKYFSEKVDFLKDKIQTTYVKERRTMKREYEEFKVRINALVAKSMRVPAEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNKDNELPSLVYISREKRPAFQHHTKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MME1</accession>
    <name>A0A392MME1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome P450 711A1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009139</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013817">
        <property type="protein sequence ID" value="MCH88255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MME1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24301">
        <property type="entry name" value="THROMBOXANE-A SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24301:SF2">
        <property type="entry name" value="THROMBOXANE-A SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0349">Heme</keyword>
    <keyword evidence="1 2" id="KW-0408">Iron</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" description="axial binding residue" evidence="1">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="298" mass="34158" checksum="459C9C65BCF79618" modified="2018-12-05" version="1">MDLSGSFSIILGLLVPILQEPFRQILKRIPGTMDWKIERTNKNLGGRLDEIVEKRMNDRKRSSKDFLSLILNARESKAVSENVFTPEYISAVTYEHLLAGSATTSFTLSSVVYLVAAHPEVEKKLLEEIDGFGSIDHIPTSQDLHDKFPYLDQVIKEAMRIYIVSPLVARETSNEVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPEKFKPERFDPNCEEMKRRHPYAFIPFGIGPRACIGQKFSIQEIKLSLIHLYRKYLFRHSPNMENPLELEYGIVLNFKHGVKLRAIKRTLRSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMV9</accession>
    <name>A0A392MMV9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014169">
        <property type="protein sequence ID" value="MCH88435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09279">
        <property type="entry name" value="RNase_HI_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="242"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="511" mass="58168" checksum="4F04C2FB7A243A45" modified="2018-12-05" version="1" fragment="single">LAGLRLAKDVGAREIKIFTDSQLVASQVLGEYQAKNDNLQEYLRLVQEMVAMFDSVNIKHVPRGDNTRADILSKLASTKKKKGGNKSVIQEILPHPSIKGRAPSTLTVMDINVYSIKDGTSWMTKYYDYLAHGHLPKDEKEAKTIQRKASSYCLMHDKLYRRGISNPLLRCIDEGDVDYILREVHEGINGQHPGGRSLARKVLRAGYYWPTMQEDAKEHVKKCDSCQRHADMILAPPKELNTLSSPWPFTWWGMDILGPFTTGLHGGKYLIVGVDYFTKWVEAEVIPNIADVTILRFFKKNILARFGIPQAVVTDNGTQFTDKNFQEFLAAIKTKQHFTSVEHPQTNGQAESANRVILRGLKRRLEEGKDKWVEELWSVLWAYRTTPHSTTGETPFRLTYGTEAVIPVEVEELTWRTTQPLSNEENNEAIREELDLIEELRTAASLREASLKQKVAARHNLKVINREFEVGSLVLRRNAKDTHHGKLTANWEGPYRVRAKTDHGGYHIETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMW9</accession>
    <name>A0A392MMW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Chaperone protein ClpB4 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009334</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014192">
        <property type="protein sequence ID" value="MCH88445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19499">
        <property type="entry name" value="RecA-like_ClpB_Hsp104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000025">
        <property type="entry name" value="ATP-dependent Clp protease subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050130">
        <property type="entry name" value="ClpA_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638:SF86">
        <property type="entry name" value="CHAPERONE PROTEIN CLPB4, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="199"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="10"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="386" mass="44083" checksum="3962EFFD5EFE63FF" modified="2018-12-05" version="1" fragment="single">MEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFQNSGQSFLREEVSDLDITEIVSKWTGIPLSNLQQTEREKLVSLEKVLHKRVIGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELGKALANYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHHILETLRSTQDDKVAVYDQMKSQVVELARQTFRPEFMNRIDEYIVFQPLDSNEISKIVELQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN12</accession>
    <name>A0A392MN12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sodium-coupled neutral amino acid transporter 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0009484</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014463">
        <property type="protein sequence ID" value="MCH88593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031090">
        <property type="term" value="C:organelle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF571">
        <property type="entry name" value="TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="8">
        <location>
            <begin position="12"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH88593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17252" checksum="575DEF174BA24CB1" modified="2018-12-05" version="1" fragment="single">HTIDNELGDSSPIQPVICASLVLCSGIYILTALFGFLLFGEATLGDVLANFDTDLGIPYSNVLNDIVRISYALHLMLVFPVIFFSLRFNLDDLVFPSAKSLEVDKFRFTLITTGLISLLYVAANFVPSIWDVFQFTGATATVCLGFIFPAAIALSLFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNL4</accession>
    <name>A0A392MNL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013754">
        <property type="protein sequence ID" value="MCH88228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="23026" checksum="2F17C2EFF12ED7A0" modified="2018-12-05" version="1" fragment="single">GKVDHCGCRLFHQVSGSGTNFQHIGRSSEEVLLEEDNLQNTFISVEHPQANGQVESANKSSTGEAPFMMVYGTNAMIPLEINPPSWRRETATLEENTEALKENLDMIEEIREKAHFREFAMKQRAARRYNTRVIQRKFQEGDFILKRPMRKDKGGKLAANWEGPFRIHEAFEGGAYRLETMKGEVIPRTWNIANLKFYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP98</accession>
    <name>A0A392MP98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015983">
        <property type="protein sequence ID" value="MCH89356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.100.10:FF:000086">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46873">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46873:SF1">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="Cyclophilin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="1">
        <location>
            <begin position="70"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15562" checksum="22B757B2B2EB9D11" modified="2018-12-05" version="1">MRHCAGCQFYRAESRGQSWDSEGNHIKNAGFGPPFALIQGTLEAQGTPFNKLPLEDCPILRRGSVALIGSGPEFFISLADHSEWKQEYTVFGSVLPEDMNVAEKIAALPTLPDVWNNVNVTVLEKPVPFLFRRINKSSQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ13</accession>
    <name>A0A392MQ13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinesin-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015952">
        <property type="protein sequence ID" value="MCH89343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10945" checksum="F7E36A29A5CE334F" modified="2018-12-05" version="1">MFPIGTANLLSCFRILLAGMRRRSCLFILVRSLKLLEKHLSTLKFAEQFSMVELGAARTNKNNAQVYELREQAALAKKEGEAEHFPTQPVKGDIPAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ57</accession>
    <name>A0A392MQ57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010289</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016072">
        <property type="protein sequence ID" value="MCH89393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6688" checksum="DC573FC270484B64" modified="2018-12-05" version="1">MPEKKKPRMRYYSKPMKGSMSEEASESKRALTPPLPRPSTPPSKRSVVLALKVKDCIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS14</accession>
    <name>A0A392MS14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polynucleotidyl transferase Ribonuclease H fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009967</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015409">
        <property type="protein sequence ID" value="MCH89074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF11">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="37"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10885" checksum="1725DACA718B1F12" modified="2018-12-05" version="1" fragment="single">MVQGLLGDQQQQEQQLLHDRSAEQQWQQPPLGYVKCNVDTSFFETQAATGWGWCARDQRGPFLLAGTNLMQAKLNTLEGEAMAIKEAMSEMIQRGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSN9</accession>
    <name>A0A392MSN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Regulatory-associated protein of TOR 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010935</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat RAPTOR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017453">
        <property type="protein sequence ID" value="MCH90029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031931">
        <property type="term" value="C:TORC1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030674">
        <property type="term" value="F:protein-macromolecule adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071230">
        <property type="term" value="P:cellular response to amino acid stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009267">
        <property type="term" value="P:cellular response to starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030307">
        <property type="term" value="P:positive regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010506">
        <property type="term" value="P:regulation of autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031929">
        <property type="term" value="P:TOR signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000145">
        <property type="entry name" value="Regulatory-associated protein of TOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000357">
        <property type="entry name" value="HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004083">
        <property type="entry name" value="Raptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12848">
        <property type="entry name" value="REGULATORY-ASSOCIATED PROTEIN OF MTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12848:SF16">
        <property type="entry name" value="REGULATORY-ASSOCIATED PROTEIN OF MTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02985">
        <property type="entry name" value="HEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01547">
        <property type="entry name" value="YEAST176DUF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="23734" checksum="005528FA16E50BEF" modified="2018-12-05" version="1" fragment="single">MGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFMKFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEDGLSHVCLKHLESSSPNDSQTEPLFLQWLCLCLGKLWEEFPEGKIIGLQGHATSILAPLLSEPQPEVRASAVFALGTLVDVGFDSCRSVGDEECDDDDKFRAEVSIVRSLLSVASDGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT13</accession>
    <name>A0A392MT13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Wall-associated receptor kinase-like 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0010310</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016107">
        <property type="protein sequence ID" value="MCH89414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000481">
        <property type="entry name" value="Wall-associated receptor kinase-like 14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000161">
        <property type="entry name" value="Wall-associated receptor kinase-like 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008">
        <property type="entry name" value="LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008:SF62">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 16" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="18">
        <location>
            <begin position="120"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00056804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH89414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="380" mass="42319" checksum="72500710856E21D1" modified="2018-12-05" version="1" fragment="single">MNCVKFFVTHYSVSKEHFRYCSSSSSKLFMVALLSAPGCSASTLTSGGCGSATKIGVVVAVVVTGVVIVAALIILCFCARRRFTWLRKHTRVKRLLREAAGNSIVPLYSYKDIEKATNSFSDKQRLGTGAFGTVYSGKLRNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIASETANAIAYLHSSIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEVNLAALAVDRIRRGSIDEIVDPFLEPNRDAWTLYSINKVAELAFRCLAFHSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTA6</accession>
    <name>A0A392MTA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019018">
        <property type="protein sequence ID" value="MCH90770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7229" checksum="D2C6C4D14BD0B050" modified="2018-12-05" version="1" fragment="single">MANNIIARMPRGVQMIGWIPPADGKVKLNTDEACKEVYGSPGEIIGSMLHVHKRGRHYISTQNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTE7</accession>
    <name>A0A392MTE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pre-rRNA-processing TSR1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018652">
        <property type="protein sequence ID" value="MCH90593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030688">
        <property type="term" value="C:preribosome, small subunit precursor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034511">
        <property type="term" value="F:U3 snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000479">
        <property type="term" value="P:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039761">
        <property type="entry name" value="Bms1/Tsr1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007034">
        <property type="entry name" value="BMS1_TSR1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12858:SF1">
        <property type="entry name" value="PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12858">
        <property type="entry name" value="RIBOSOME BIOGENESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04950">
        <property type="entry name" value="RIBIOP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01362">
        <property type="entry name" value="DUF663"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribosome biogenesis protein BMS1/TSR1 C-terminal" evidence="2">
        <location>
            <begin position="26"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19851" checksum="9831577879E3C0CE" modified="2018-12-05" version="1" fragment="single">MTRENIQDELKAIKEDNAADEEFPDEVDTPLDVPARMRFAKYRLLKSFRNSSWDPNESLPKDYPRNFNYHNFKRTQKNVLAKALEMEQENREDCVPVGSYTRLHIMDIPNDVASTLCKLAKTNPVTASGLLEHECEVSVLHFSVKKHETYHAPIKSKEELIFHVGFRQFVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTT6</accession>
    <name>A0A392MTT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011624</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018884">
        <property type="protein sequence ID" value="MCH90702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057135">
        <property type="entry name" value="At4g27190-like_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23247">
        <property type="entry name" value="LRR_RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13254" checksum="82B0144820700D34" modified="2018-12-05" version="1" fragment="single">MRSLEHLEKLHILEXKNIYEIVSQKESEANGEKIIFPALQHLLLAKLPDLKAFFHGSYNLDFPSLQKLDIKDCPNMEVFSQGFSSTPKLKDVNIEFGSLTSNSIHKNDINVTLQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV59</accession>
    <name>A0A392MV59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BAG family molecular chaperone regulator 6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019899">
        <property type="protein sequence ID" value="MCH91193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="332" mass="36403" checksum="1009612C043EBE5B" modified="2018-12-05" version="1" fragment="single">MNFQGLHPSLRKIRKSLARELVTLQERLDSITADKYPQQQIQELDAKESVKESVEVPMSYHNGEHNQEQQEETTSQEDSSEVISDGKHQDQFYMEDNDGGSESPSHVDPASIEGTTPSVLLNRSVNEDISEVVADEALDSTSKLSDKADGECELKSEVIDIPLEVDKLDMTGLEELPVGVIDDVIGDSVNEGLDSDMHAMKVLPVGVLDEDAATSEETSTSYMHAMKVLSVGVLDEDATTSEETNTAFKELPVGVIDEDIIDNSASEALDSHMYAMKVLPVGVLDQDAATSKETSTSDMHTMKVLPVRVLDEDTSTCEETNFFESEVQAENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX42</accession>
    <name>A0A392MX42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polyadenylate-binding protein RBP47C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013003</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021833">
        <property type="protein sequence ID" value="MCH92071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10019" checksum="55A59E7506850E16" modified="2018-12-05" version="1" fragment="single">FRTDFGSPWNSPAYYGGAVYDGYGYALPHPHDPSMYAAAYGAYPIYGGHQQQLKSLDKVELESSSTGSSSPVDYGMFPWLWSRQGQQKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXI1</accession>
    <name>A0A392MXI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012614</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020951">
        <property type="protein sequence ID" value="MCH91685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8432" checksum="94E39830485427FC" modified="2018-12-05" version="1" fragment="single">MKQGNNFLMHPVDASSHPLPITICSDSDHVXXXXXXXLMLEEIVAFHQARVNHGAFDYQWTQVASKTFVEGRSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZF2</accession>
    <name>A0A392MZF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">P-loop nucleoside triphosphate hydrolase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0013873</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023791">
        <property type="protein sequence ID" value="MCH92927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005741">
        <property type="term" value="C:mitochondrial outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000416">
        <property type="entry name" value="p-loop nucleoside triphosphate hydrolase superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051701">
        <property type="entry name" value="Mito_OM_Translocase_MSP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644">
        <property type="entry name" value="AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45644:SF85">
        <property type="entry name" value="P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="6">
        <location>
            <begin position="75"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH92927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="22807" checksum="517130A1E94E06AA" modified="2018-12-05" version="1" fragment="single">MPQVSYSNTTLPLRLQEVPDNEFEKRIRPEVIPANEIGVTFADIGALEETKESLQELVMLPLRRPDLFDGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTNWDGLTSKPSDRILVLAATNRPFDLDEAIIRRFER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N140</accession>
    <name>A0A392N140_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">AT-hook motif nuclear-localized protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0014250</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">The PPC domain mediates interactions between AHL proteins.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024623">
        <property type="protein sequence ID" value="MCH93302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N140"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003680">
        <property type="term" value="F:minor groove of adenine-thymine-rich DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11378">
        <property type="entry name" value="DUF296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.80">
        <property type="entry name" value="Hypothetical protein, similar to alpha- acetolactate decarboxylase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039605">
        <property type="entry name" value="AHL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005175">
        <property type="entry name" value="PPC_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31500:SF18">
        <property type="entry name" value="AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31500">
        <property type="entry name" value="AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03479">
        <property type="entry name" value="PCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117856">
        <property type="entry name" value="AF0104/ALDC/Ptd012-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51742">
        <property type="entry name" value="PPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="PPC" evidence="8">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="77"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="90"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU367031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH93302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="14309" checksum="0CECC810251667D0" modified="2018-12-05" version="1" fragment="single">MWVSSGRRTCLRSEVPVGIFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFQPEQQKPKKQRTDYTSPTAPPTSSHINNHVSAEQLKPIMSPAGFNFASFGNGQGSGNSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N152</accession>
    <name>A0A392N152_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014478</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025151">
        <property type="protein sequence ID" value="MCH93526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N152"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9557" checksum="8807B0E94E884A17" modified="2018-12-05" version="1">MLAELKVVAVTKTLLEQRRLMVHAVVASYQAKLAMSCASPATKSLDNLTPIAPQELSLPLKYLPWRSQLKPPQERIYREERKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1G6</accession>
    <name>A0A392N1G6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histone-lysine N-methyltransferase EZA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013271</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022457">
        <property type="protein sequence ID" value="MCH92334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1G6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046976">
        <property type="term" value="F:histone H3K27 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031507">
        <property type="term" value="P:heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045318">
        <property type="entry name" value="EZH1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058609">
        <property type="entry name" value="HTH_CLF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747:SF14">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE EZA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25996">
        <property type="entry name" value="HTH_CLF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histone-lysine N-methyltransferase CLF-like HTH" evidence="2">
        <location>
            <begin position="44"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="26123" checksum="F13F1ECDF359C556" modified="2018-12-05" version="1" fragment="single">MTEDQSVFRTRYINYDHHGGETLITNISDTEEEPKEHKEVKRDFSEGEDRFLRMVFEEHGLTEEVLSIVKDVIGGTSSEIQERYEHIKEKEQNSEDYGESRSHSEIRLNKSLSITLDGFNHLLCRRCMIFDCSVHRCSQKFIYPNEKQTVWSEPEGDRKPCSDYCHLNDKDATISDSMRDLNLDAACNEEQHVMDETEVNQMSNSMEGQIEEDSSVSNWKPLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N234</accession>
    <name>A0A392N234_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ras-related protein RHN1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0014823</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025969">
        <property type="protein sequence ID" value="MCH93870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003486">
        <property type="entry name" value="Major sperm protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24073">
        <property type="entry name" value="DRAB5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH93870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10756" checksum="DA77F2D156439F6E" modified="2018-12-05" version="1" fragment="single">VLLGDMGTGKTSLVLRFVKGQFSEYQESTIGAAFFTQVLSLNEATVKFDIWDTAGQERYHSLAPMYYRGAAAAIVXYDITSMQRIFIHMTGRKVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3T0</accession>
    <name>A0A392N3T0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">SNF1-related protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0015189</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. SNF1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026828">
        <property type="protein sequence ID" value="MCH94232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3T0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000571">
        <property type="entry name" value="Maternal embryonic leucine zipper kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346:SF82">
        <property type="entry name" value="KP78A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24346">
        <property type="entry name" value="MAP/MICROTUBULE AFFINITY-REGULATING KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00058225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH94232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="19199" checksum="E9CB565B439C9D7B" modified="2018-12-05" version="1" fragment="single">RREIKILRLFMHHHIIRLYEVVETTTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3X1</accession>
    <name>A0A392N3X1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Aluminum-activated malate transporter 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0015230</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the aromatic acid exporter (TC 2.A.85) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026922">
        <property type="protein sequence ID" value="MCH94273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3X1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015743">
        <property type="term" value="P:malate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020966">
        <property type="entry name" value="ALMT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31086">
        <property type="entry name" value="ALUMINUM-ACTIVATED MALATE TRANSPORTER 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11744">
        <property type="entry name" value="ALMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH94273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="26156" checksum="EC33BD85B7EC243A" modified="2018-12-05" version="1" fragment="single">APADKRQVFRNELKKVGSEAARVLRELGNKVKNMEKLGEEDILFDVHEAAEELQMKIDKKSFLLVNAELWEIGNRPRNENVSQDLLQMDEERHFLQYKSLSEAVLDLRSVNVPKSWEESVVAPDNNIKPVNVVTDENTFMKQTSWPAQFSFQADPMPKDEPSKTYESASSLTLATFTSLLIEFVARLQNLVDSFEELGEKAKFKDPLQQQEPVTSGWTRLFNCFKSKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4J6</accession>
    <name>A0A392N4J6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0015030</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026427">
        <property type="protein sequence ID" value="MCH94075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4J6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019954">
        <property type="entry name" value="Ubiquitin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019956">
        <property type="entry name" value="Ubiquitin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050158">
        <property type="entry name" value="Ubiquitin_ubiquitin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10666">
        <property type="entry name" value="UBIQUITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00348">
        <property type="entry name" value="UBIQUITIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00213">
        <property type="entry name" value="UBQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00299">
        <property type="entry name" value="UBIQUITIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50053">
        <property type="entry name" value="UBIQUITIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ubiquitin-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7972" checksum="4F04745DA05DFA59" modified="2018-12-05" version="1">MQIFIKSPIGKTITLAVRSSDTIVDVKLMILDIEDIPVQQQCLIFAGKQLDDSRTITTTNIEFSNIEFSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4U1</accession>
    <name>A0A392N4U1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">WD-repeat-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026710">
        <property type="protein sequence ID" value="MCH94185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4U1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43991:SF38">
        <property type="entry name" value="OS02G0721600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43991">
        <property type="entry name" value="WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12074" checksum="946E8BD0B42394B0" modified="2018-12-05" version="1" fragment="single">MSHRQGVDAEYFADEYEMDDVEDDIEIDGESINREAGDVDSDVDEYDYSSSKAVDTTAAQARRGQDIQGIPWDSLSITRERYRQTRLEQYKNYENIPHSGDRSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N549</accession>
    <name>A0A392N549_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine carboxypeptidase-like 42-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015917</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028553">
        <property type="protein sequence ID" value="MCH94946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N549"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004185">
        <property type="term" value="F:serine-type carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001563">
        <property type="entry name" value="Peptidase_S10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11802:SF20">
        <property type="entry name" value="SERINE CARBOXYPEPTIDASE-LIKE 41-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11802">
        <property type="entry name" value="SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00450">
        <property type="entry name" value="Peptidase_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="11997" checksum="D05651B53364623F" modified="2018-12-05" version="1" fragment="single">GYVDIDVKHGRSLFYYFVEAEDHPHKKPLTLWLNGGPGCSSLGGGAFTELGPFYPTGDGRGLRRNSKSWNRASNLLFVESPAGVGWSYSNTTSDYNTGDTTTGTIKTKFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N567</accession>
    <name>A0A392N567_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein FAM135B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028000">
        <property type="protein sequence ID" value="MCH94722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10028" checksum="B187FD54768810DA" modified="2018-12-05" version="1" fragment="single">DCSNYSEGSYAEDYVGSNKVMLIKALMAAHDILLDDLKRISTGIGEAIDLXEIAIESDDTKWFDSTLPAHVKSIDGEPSLQLSDREELNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5K6</accession>
    <name>A0A392N5K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ran guanine nucleotide release factor-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0015829</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MOG1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028344">
        <property type="protein sequence ID" value="MCH94862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1000.10">
        <property type="entry name" value="Mog1/PsbP, alpha/beta/alpha sandwich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007681">
        <property type="entry name" value="Mog1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016123">
        <property type="entry name" value="Mog1/PsbP_a/b/a-sand"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15837">
        <property type="entry name" value="RAN GUANINE NUCLEOTIDE RELEASE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15837:SF0">
        <property type="entry name" value="RAN GUANINE NUCLEOTIDE RELEASE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04603">
        <property type="entry name" value="Mog1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55724">
        <property type="entry name" value="Mog1p/PsbP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12418" checksum="343FB9BB9FD98B85" modified="2018-12-05" version="1" fragment="single">MESFVFCQYTCNGLIILCVMCLWQLNGLIILEWFLLPTIASAKMSQDIFHQSPLFGGKLSTVFPNRFQDVSNIPEVPDHQEVFADPSRDESLIVELLEFKPDIAHNGSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N669</accession>
    <name>A0A392N669_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">DEAD-box ATP-dependent RNA helicase 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0014938</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026213">
        <property type="protein sequence ID" value="MCH93984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N669"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050079">
        <property type="entry name" value="DEAD_box_RNA_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE RHLE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959:SF14">
        <property type="entry name" value="DEAD-BOX ATP-DEPENDENT RNA HELICASE 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEAD-box RNA helicase Q" evidence="8">
        <location>
            <begin position="33"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="64"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="33"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH93984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="12828" checksum="735A5EDE986B034B" modified="2018-12-05" version="1" fragment="single">EDYRPDEEDEEEGNAGDKKSFFAPSDGTSFSADSFLQLNLSRPLLRACAVLGFAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMNAIRVLILTPTRELAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N750</accession>
    <name>A0A392N750_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0016550</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030147">
        <property type="protein sequence ID" value="MCH95571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001091">
        <property type="entry name" value="Probable disease resistance protein At1g61300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF53">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RPP13-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="6">
        <location>
            <begin position="3"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="NB-ARC" evidence="5">
        <location>
            <begin position="141"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH95571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="391" mass="44711" checksum="62D4D7A361C8570E" modified="2018-12-05" version="1" fragment="single">MLIQQELGRINAFLKGSEGKRDEHEVVKAVVSQIRDVAYEAQDVIDNYVVDVVHHRRKGKLEKFFHNFKHGTMLHNVNNQIETIKSKIKDIYDNKDKYDINEGESVAIAMEXXXXXXXXXXXXXXXXXDEVVGFDGYATEVTNLIVKENTSREVLSIIGMVGCGKTTLARKIYKDPQINKLFDCCAWEFVTKEFNSKELLLSLLRSFEAIPEDELKRIKKEKNEEESESTAKTQEIAILKNMLREYLSDMRYLIVLDDMWSSQVLDDIGDAFPDDNMGSRILITTRXXXXXXXXXXXXXXXXXXLNDEDSWTLLSKKVFRVEKCPLSLEIAGRNIAIACKGLPLSIVVIAGILRGKEKSERVWEKVISNVNWFISKEDALVKEIVRLSYES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA11</accession>
    <name>A0A392NA11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017419</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032309">
        <property type="protein sequence ID" value="MCH96433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="197"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="380" mass="43930" checksum="BE1DA08902850684" modified="2018-12-05" version="1" fragment="single">EELRGWNREVFGILDLNIEKTVKDLNEAEALFSCDGVNSVLSDKAAINKKFWDQLHFKESFIKQKSRMKWVREGDSNSRFFHASLKSRNRRNHLSVLRRGDEWIQGVDNIKLEVKNHFARNFTEDWHNRPFVHGIDFKVLTXDDNEFLIQPFSEEDVREXIWSCDXNKSPGPDGFNFNFLKECWSTLKSDVMEFLNEFHHNAVLPKAITTSFLALIPKKDHPQQLSDYRPICLIGILYKLLSKLLAGRLKNIMGKLISTCQSAFIPGRXILDGVVVLNEIIDLAKRRKDCCLFFKVDFERAYDTINWNYLERMMLKMGFAEKWLSWMRACIFNSSMSVLINGSPSQDFTVGKGLRQGDPLSPFLFLIAAEGLTGMVKKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB13</accession>
    <name>A0A392NB13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">UDP-galactose transporter 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0017289</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032018">
        <property type="protein sequence ID" value="MCH96305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050186">
        <property type="entry name" value="TPT_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11132">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="11825" checksum="2B7B0E8890D85ACB" modified="2018-12-05" version="1">MFIILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLFMGFIFFGKEGLNLHVVLGMTIAIAGMVWYGNASSKPGGKERRSFSIPTTKTQDYAALPVSSESVEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBC4</accession>
    <name>A0A392NBC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein FEZ-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032134">
        <property type="protein sequence ID" value="MCH96358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003441">
        <property type="entry name" value="NAC-dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51005">
        <property type="entry name" value="NAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAC" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11837" checksum="54D170202E3BFD28" modified="2018-12-05" version="1" fragment="single">RAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANIRWSVLTSSGFSSFPITVVGDRTVIIPTNDWNLGQSAGYSRKQMLQLKEHSLTHGSHLYLKHPPPIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBP1</accession>
    <name>A0A392NBP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033825">
        <property type="protein sequence ID" value="MCH96993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13676" checksum="B368AC3C7DE4DE6F" modified="2018-12-05" version="1">MKVEEEQENQVQRYLGFKLSIECVAVRSLTLGAKYPLYSDCHRVLSAYGTSMIARPKSIGGGCPTEYFVPSRPASXXPGSVVFSRWVLEQVVGWSLSLYRTPSCPLARLFQRVPCPLSGYRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBR6</accession>
    <name>A0A392NBR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TSL-kinase interacting protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032452">
        <property type="protein sequence ID" value="MCH96488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11370" checksum="DF86FA37F8005082" modified="2018-12-05" version="1" fragment="single">MQGPVTSSCTVRQSKNGGDNMKDQIVNSASLPKPSTNNYSTERSVDCGTSMNINGALTSTSTYLPNSRDGSIYQNTSTEEPCGPTAHISLHGKDVTNGAITRQLEDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEC7</accession>
    <name>A0A392NEC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Squamosa promoter-binding-like protein 14-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018908</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036235">
        <property type="protein sequence ID" value="MCH97911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26102">
        <property type="entry name" value="Ig_SPL7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13100" checksum="5D437FCCECB04078" modified="2018-12-05" version="1" fragment="single">MCKPWGTWRSPELISVSPLAIVSGQETSMSLKGRNLSAPGTKIHCTGADGYTSSEVIGSEDPGMICDEIKLGGFKVQNTSPGGALGRCFIEVENGFKGDCFPVIIADASICKELRPLESEFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIL3</accession>
    <name>A0A392NIL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Eukaryotic translation initiation factor 3 subunit C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0020293</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039885">
        <property type="protein sequence ID" value="MCH99281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005852">
        <property type="term" value="C:eukaryotic translation initiation factor 3 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031369">
        <property type="term" value="F:translation initiation factor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027516">
        <property type="entry name" value="EIF3C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008905">
        <property type="entry name" value="EIF3C_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13937">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13937:SF0">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05470">
        <property type="entry name" value="eIF-3c_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Eukaryotic translation initiation factor 3 subunit C N-terminal" evidence="5">
        <location>
            <begin position="33"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="127"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="44"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="132"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="151"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="165"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="221"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH99281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="31052" checksum="32FAA3FCCC2463AA" modified="2018-12-05" version="1" fragment="single">AGGTSDDDDSDLDESVDDVPVEPDNDPTSSRYRVDNASESDDDDGHRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPNLYIKALVLLEDFLAQALANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKXDDEESDEEDDSDGETIEPEQLGNREPRSDSEAEYEEGRDDAGDGPWDQQLSRRDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRRGTGRFEQVSVAICP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJC1</accession>
    <name>A0A392NJC1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039707">
        <property type="protein sequence ID" value="MCH99218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7264" checksum="8A06BD7FBA25A2E2" modified="2018-12-05" version="1">MTPAEGEAWGLQQAMIWMKMLGYHKVIFEMDCKMVVDDVLLLGVKQTKALMLLHAALSHASRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK50</accession>
    <name>A0A392NK50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lysine-specific demethylase ELF6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019832</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038610">
        <property type="protein sequence ID" value="MCH98824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16114" checksum="47B3D1393E2A73BE" modified="2018-12-05" version="1" fragment="single">MLQENKLLSILLGKEATKQVVLWNADLLPDSGKYRRLPDLASTSGNDMADMSNDNISSADKSSHCLLDEMSLYMENLSDLYVGCDDLPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVKDSSLIXVASLHSAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLA7</accession>
    <name>A0A392NLA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DnaJ heat shock amino-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042424">
        <property type="protein sequence ID" value="MCI00174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007032">
        <property type="term" value="P:endosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006898">
        <property type="term" value="P:receptor-mediated endocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000641">
        <property type="term" value="P:regulation of early endosome to late endosome transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044978">
        <property type="entry name" value="GRV2/DNAJC13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36983">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36983:SF2">
        <property type="entry name" value="DNAJ HOMOLOG SUBFAMILY C MEMBER 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0346">Stress response</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9534" checksum="82344AC2FE652B91" modified="2018-12-05" version="1" fragment="single">DFRDMDSPAIVLLSDAFGKKNVDHGSGFVLCPLYGRKSKAFQATSGCTTSAIISNLTKTAKSTVGLSLSVETSQTLTVSEYIKQRGSWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNY0</accession>
    <name>A0A392NNY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042489">
        <property type="protein sequence ID" value="MCI00195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4298" checksum="F7A3DAFE13746F83" modified="2018-12-05" version="1" fragment="single">GACKHDGSAGCGGIIRGSDGEWLGGFAKNLGICSAYVAELSGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQP4</accession>
    <name>A0A392NQP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046412">
        <property type="protein sequence ID" value="MCI01540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37891">
        <property type="entry name" value="OS06G0113900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37891:SF1">
        <property type="entry name" value="OS06G0113900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="301"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="329" mass="35557" checksum="324B5BDB5B282D79" modified="2018-12-05" version="1" fragment="single">AGFFKVTAIFIPYIAGIIAASTVANAAHTQHFGLMIRAFTGTSLKRTQFFIRQGVSTRLSLHATSAGCFGGALISAFTYHMVHELNDTEHDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIFIVGQLCIRPVHLLLFWLTYFLFPLVSLSLLQPLLHVVKMSSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFGAIQSTATGILHAFGRVLLLDCAPSGKEGAFSIWYAWMRAAGLLVGFTVGSVGPGHIRTSFGVAFCTAVAGIVVLLFGNISDAGGAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRR3</accession>
    <name>A0A392NRR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter F family member 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022949</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047566">
        <property type="protein sequence ID" value="MCI01920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031011">
        <property type="term" value="C:Ino80 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd23021">
        <property type="entry name" value="zf-HIT_IN80B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029523">
        <property type="entry name" value="INO80B/Ies2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006880">
        <property type="entry name" value="INO80B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007529">
        <property type="entry name" value="Znf_HIT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21561">
        <property type="entry name" value="INO80 COMPLEX SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21561:SF16">
        <property type="entry name" value="PAPA-1-LIKE FAMILY PROTEIN _ ZINC FINGER (HIT TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04795">
        <property type="entry name" value="PAPA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04438">
        <property type="entry name" value="zf-HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01406">
        <property type="entry name" value="PAPA-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="INO80 complex subunit B-like conserved region" evidence="2">
        <location>
            <begin position="8"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17003" checksum="4B1155AC86C2F6BC" modified="2018-12-05" version="1" fragment="single">KKGKLSEEQLIKKAEAAKRRKIQSEKAAKEAEEAAIKKILGQDSAKKKKEEKMNKRRDEMAKEKCSKPFNLASNTVRWTMGPNGTVVTFSEDIGLPSIFQTIPNSYPPPRERCAGPNCTNAYKYRDSKSKLPLCSLGCYKAIHEKISPVLAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUM4</accession>
    <name>A0A392NUM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetrahydrocannabinolic acid synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050599">
        <property type="protein sequence ID" value="MCI02920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.462.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32448">
        <property type="entry name" value="OS08G0158400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="FAD-binding/transporter-associated domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="32295" checksum="CEB7C82D9483E8BD" modified="2018-12-05" version="1" fragment="single">MGEDLFWAIRGGGGGSFGILLWWKIKLVPVPPTVTVFTVTKTLEQGATKILHRWQEVAPYIDENLFIRVIIQPAKDGNKTQRTITTSYNAVFLGESRTLLQIIKKSFPELGLTRKDCQETSWIKSVLYVAGFPSVTPPEILLKGKPTFKNSFKAKSDFVREPIPETGLEGLWQRLLSEDSPLMIWNPYGGKMSEFSESDSPFPHRKGTLYKIQYLSIWQEGEKNVAKHVDWIRKLYNYMSPYVSKFPREAYVNYRDLDLGINTKNSTSYIKASAWGYRYFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ66</accession>
    <name>A0A392NZ66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stress response protein NST1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025526</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055533">
        <property type="protein sequence ID" value="MCI04479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZ66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="243"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="279" mass="29943" checksum="E37898B046D6580F" modified="2018-12-05" version="1" fragment="single">MSWHQLFTRSSPVPQSSNTNVICRPNSKTQAESKSPQSSGQSPATQSFNNPIHFGLPSPFNISTHPNGGSTSSSLGFSPAIEQLFSPVRNTSHDFRHDEQELFEDPCYDPDPASLLGPVSESLENFQLDLGTGFGTGFGTDMELAKPHSLKNISAGSDFNKLSPIESPLSREKHASPADDAAASDKGTWQMWSTSPLGQEGLGLVGGPGSWLLSSQRNVPNKDDFMLPSAQKTMASLFNNDNNMISNTHSPQNVFLPNGQSGGNISPVTSSSSYDPWSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7L8</accession>
    <name>A0A392P7L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative Xaa-pro aminopeptidase P-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0029156</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M24B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067700">
        <property type="protein sequence ID" value="MCI08083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050422">
        <property type="entry name" value="X-Pro_aminopeptidase_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43763:SF12">
        <property type="entry name" value="AMINOPEPTIDASE P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43763">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="Creatinase/aminopeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M24" evidence="4">
        <location>
            <begin position="2"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI08083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13202" checksum="A3C9430C2F073D91" modified="2018-12-05" version="1" fragment="single">QVLKGHIALGNAIFPNGTNGHSLDILARIPLWKYGLDYRHGTGHGIGSYLNVHEGPHLISFRTRNVPLQSSMTVTDEPGYYEDGAFGIRLENVLVINKSDTEYNFGDKGYLSFEHITW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8P8</accession>
    <name>A0A392P8P8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0028705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066118">
        <property type="protein sequence ID" value="MCI07636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="17131" checksum="7D3CE6C4F641DF56" modified="2018-12-05" version="1" fragment="single">GDSGDWTEARSRRRKAPGQAERGFDRRRQDSRYXDDRXVXTXQSRRRSFSRDAGFTTGLDPGRHTFTTMQDRISNTDGLLCGRDEQFSRKAGDGDAYKLCSVQFNNSNTAGILCGREEQCPCKAGDRVGSEFKRTCTWPKTVTFMTMFMIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEZ4</accession>
    <name>A0A392PEZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Maf-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074823">
        <property type="protein sequence ID" value="MCI10049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7116" checksum="CCEDB3AF9A0554BD" modified="2018-12-05" version="1" fragment="single">ADAIISKLQTTGNQERVDEPTLLIAADTVCHVSFSWHCCPLVKFCASLDLASSAIFKKERDVQGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFC1</accession>
    <name>A0A392PFC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074718">
        <property type="protein sequence ID" value="MCI10016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="96"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="26384" checksum="7175B96512E734E8" modified="2018-12-05" version="1" fragment="single">MGNGESTSFWRDKWIGDTMLSTKFPRLFALSIQKDASVNEVVMVEEDRRSWNFLWRRRLFQWEEESVSHLLASLENVCLTHEEDKWRWKFDPDGIFSVKSAYDSLAKEIVNGTNISGHEEYVFKHIWDSPAPSKVLAFSWQLXXXXXXXXXXXXLRGVLPQNSDGTCVWCHESIESSSHLFLQCNVAFTVWYEIFKWLGVVIVLPPNLFNLFDCVSEAASSKKARKGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGC5</accession>
    <name>A0A392PGC5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">poly(A)-specific ribonuclease</fullName>
            <ecNumber evidence="7">3.1.13.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">A2U01_0031632</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">cv. 10/8</strain>
            <tissue evidence="18">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="17">Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exonucleolytic cleavage of poly(A) to 5'-AMP.</text>
            <dbReference type="EC" id="3.1.13.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Component of the CCR4-NOT complex, at least composed of CRR4 and CAF1 proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the CAF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.4" evidence="7"/>
    <dbReference type="EMBL" id="LXQA010076654">
        <property type="protein sequence ID" value="MCI10539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030014">
        <property type="term" value="C:CCR4-NOT complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004535">
        <property type="term" value="F:poly(A)-specific ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039637">
        <property type="entry name" value="CNOT7/CNOT8/Pop2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006941">
        <property type="entry name" value="RNase_CAF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10797">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04857">
        <property type="entry name" value="CAF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-0539">Nucleus</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="15" id="KW-0804">Transcription</keyword>
    <keyword evidence="14" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00011757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00025148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="MCI10539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18717" checksum="FDE4497836309377" modified="2018-12-05" version="1" fragment="single">MKEDPNSKPIIVREVWAHNLEAEFDLIRQAIDKYNFISMDTEFPGFIYSPKVDYYHLQPXDSYRCLKDNVDALKLIQLGITLTDVSGNLPDLGTNNRYIWEFNFRDFDVERDPHNKKSIAMLRRQGIDFQRNVSHGVDSFHFSDLMLKSKLVFNQSVTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJZ3</accession>
    <name>A0A392PJZ3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0032921</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081620">
        <property type="protein sequence ID" value="MCI11819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="1">
        <location>
            <begin position="32"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18202" checksum="317BAE9D548DFD34" modified="2018-12-05" version="1" fragment="single">SADRGLGGPYPWPCETNLYCVGWGTIPMYQIAFQQLGYRMHFTDPETAVFRHLRVSPSQLHPNSLAFLRAFEVTAGYLEIVPTLKLFFHAFGLQHSSPKGEKAKGKVPKGVEKESSKHDWVSFKQRKCFFKMFEECVCGFKEKYYGVRPITSKGWKSIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USA9</accession>
    <name>A0A392USA9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960464">
        <property type="protein sequence ID" value="MCI78856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4133" checksum="1B76F370A654BC6C" modified="2018-12-05" version="1" fragment="single">MFQLLPKTLDSARTIVYRYVFGSGGEPPLTPPLVVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTM9</accession>
    <name>A0A392UTM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099853</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010953989">
        <property type="protein sequence ID" value="MCI78583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7272" checksum="D84EBFF51C6398DD" modified="2018-12-05" version="1">MEMPLGMPLVQTDPRDGTAASVSREDPDYSPQIVAGAGTDALMATKQSQIIQDKNLRLQVVEESRIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWS2</accession>
    <name>A0A392LWS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000096">
        <property type="protein sequence ID" value="MCH79411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="650" mass="71476" checksum="AC999C727FA1EE8C" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY86</accession>
    <name>A0A392LY86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipoxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000504">
        <property type="protein sequence ID" value="MCH79923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7479" checksum="27994EE7C426EBD8" modified="2018-12-05" version="1">MIAFGSRFGKGQKIKGRVVIMHKNVLDINALTSAGLLETTSSAVGNIFDTYTAGFGCSVALRLISATTADGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZA3</accession>
    <name>A0A392LZA3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000923">
        <property type="protein sequence ID" value="MCH80321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="118"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="238"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="256"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="299" mass="33914" checksum="D18F5C409ADC1DAE" modified="2018-12-05" version="1" fragment="single">MADGTRLKSIETQLQQITTTINTQIQNQLNQLTETVANHSQSITDTSSVLQRMETVLQSIASNAVTHGQQPRPNPPMHTRNVKLEFPRFDGSHALEWLFRANQFFEYYATADPERITIASVHFDQTVIPWYQMLQRARPFLSWQELSRSIELEFGPSEFERPRASLFKLTQSGSLDDYYLEFTALANRSSGLTVEALLDCFISGLQTELKREVIAQNPGSLIQAVSVARLYEDKFTQSTPKPSQFIHPRTKYSTPNPSPAPTPPKKPPILPTPSTKPQIPPQRSIKHISSAEIQLRRDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZA4</accession>
    <name>A0A392LZA4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Bifunctional protein aas</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0001103</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000936">
        <property type="protein sequence ID" value="MCH80336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZA4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05931">
        <property type="entry name" value="FAAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="entry name" value="ACP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040097">
        <property type="entry name" value="FAAL/FAAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22754:SF32">
        <property type="entry name" value="DISCO-INTERACTING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22754">
        <property type="entry name" value="DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="ACP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="886"/>
            <end position="907"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="927"/>
            <end position="951"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="771"/>
            <end position="845"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH80336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1106" mass="122133" checksum="D735BF67A50F7844" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZP5</accession>
    <name>A0A392LZP5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">A2U01_0001286</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">cv. 10/8</strain>
            <tissue evidence="18">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13 20">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 20">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010001145">
        <property type="protein sequence ID" value="MCH80517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001206">
        <property type="entry name" value="putative receptor-like protein kinase At1g80870"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000780">
        <property type="entry name" value="Receptor-like serine/threonine-protein kinase At4g25390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000542">
        <property type="entry name" value="Receptor-like serine/threonine-protein kinase At4g25390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044576">
        <property type="entry name" value="At4g25390-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46821">
        <property type="entry name" value="OS07G0586332 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46821:SF4">
        <property type="entry name" value="OS08G0275200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-0675">Receptor</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="17">
        <location>
            <begin position="79"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="422"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="709"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="422"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="15">
        <location>
            <begin position="721"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="MCH80517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="732" mass="82482" checksum="964268E6F9CDF90B" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0P1</accession>
    <name>A0A392M0P1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001563">
        <property type="protein sequence ID" value="MCH80850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0P1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7337" checksum="3476DC3F8B9D0DC7" modified="2018-12-05" version="1" fragment="single">MSFNDQDWKNVTSNLGPGDNVGIFVAFGHELTVKKTAVYLIYDQSITMEVDADEQDALKNNVDVNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0T9</accession>
    <name>A0A392M0T9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Homeodomain-like transcriptional regulator-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001624</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001562">
        <property type="protein sequence ID" value="MCH80849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0T9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018501">
        <property type="entry name" value="DDT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044977">
        <property type="entry name" value="RLT1-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028942">
        <property type="entry name" value="WHIM1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968">
        <property type="entry name" value="HOMEOBOX-DDT DOMAIN PROTEIN RLT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968:SF8">
        <property type="entry name" value="HOMEOBOX-DDT DOMAIN PROTEIN RLT3 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02791">
        <property type="entry name" value="DDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15612">
        <property type="entry name" value="WHIM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50827">
        <property type="entry name" value="DDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDT" evidence="4">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="187"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="3">
        <location>
            <begin position="193"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="317" mass="35204" checksum="E7BB528FE615D20F" modified="2018-12-05" version="1" fragment="single">VFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVEFSNGFCPHLNKSCNFLALLHSVENQEYSLDVWRISLNPLTWIEILRQVLVAAGFDSKQGAFRREGLGKCELFKILSERGNNGCKVSELAKSLQIAELNLANTTEELESSIYSTLSSDITLFEKISSSAYRLRMSTVSKDNDDSESDTEDSGSVDDELNDSDACSSGDDFESGSINSNIRKLKPDNNRKVKHNRLKVYTKIDESRAGEVWLLGLMDSEYSDLKIEEKLNALAALTGLLSSGSSIRMKMILATGGFTLNPLKTATGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0U5</accession>
    <name>A0A392M0U5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Transcriptional activator DEMETER-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0001378</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DNA glycosylase family. DEMETER subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001252">
        <property type="protein sequence ID" value="MCH80608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035514">
        <property type="term" value="F:DNA demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0141166">
        <property type="term" value="P:chromosomal 5-methylcytosine DNA demethylation pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1670.10:FF:000004">
        <property type="entry name" value="DNA glycosylase/AP lyase ROS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044811">
        <property type="entry name" value="DME/ROS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028924">
        <property type="entry name" value="Perm-CXXC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028925">
        <property type="entry name" value="RRM_DME"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46213:SF24">
        <property type="entry name" value="HHH-GPD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46213">
        <property type="entry name" value="TRANSCRIPTIONAL ACTIVATOR DEMETER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15629">
        <property type="entry name" value="Perm-CXXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15628">
        <property type="entry name" value="RRM_DME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00525">
        <property type="entry name" value="FES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HhH-GPD" evidence="11">
        <location>
            <begin position="86"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="62"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH80608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="522" mass="59425" checksum="B58D8490632A3560" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2H0</accession>
    <name>A0A392M2H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002374">
        <property type="protein sequence ID" value="MCH81500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6273" checksum="66D2F0C69AF7CDE7" modified="2018-12-05" version="1">MRRALCLFASVLASWDASRKVEFLLGVTISSLENHLGARGLSPDETVRRLSEEACPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2Z9</accession>
    <name>A0A392M2Z9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002551">
        <property type="protein sequence ID" value="MCH81625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF70">
        <property type="entry name" value="NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="109"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="736" mass="84850" checksum="A76F85FAB8A1C8F5" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M316</accession>
    <name>A0A392M316_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002492</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002657">
        <property type="protein sequence ID" value="MCH81700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M316"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="NPH3" evidence="6">
        <location>
            <begin position="161"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="536"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="481"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="536"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH81700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="570" mass="64168" checksum="3E97638280041171" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3U8</accession>
    <name>A0A392M3U8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003050">
        <property type="protein sequence ID" value="MCH81981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3U8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8813" checksum="D1C1CBF4E35EB9D3" modified="2018-12-05" version="1">MSYLAEICTVGNETQAENCDRIHNEGLSHYLSLSVMRLQNSSLCGGGGMTRRSDGGISICGGSEVRREKGFRVCESVRVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3X0</accession>
    <name>A0A392M3X0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002764</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003031">
        <property type="protein sequence ID" value="MCH81969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3X0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051304">
        <property type="entry name" value="SCF_F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123:SF15">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KIB1-4 beta-propeller" evidence="1">
        <location>
            <begin position="28"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="25859" checksum="ACB6A1BB35801D7F" modified="2018-12-05" version="1" fragment="single">VVAATCEVGQPLAVLTYDVSDIMLKIFQCDGDSWTSIPTMPTRSSSWGDICIFKGRPCVADKDGRTLMIGENFSVLLLANPVFGGGTEKFLVKSECDLLLVDGHEIYTKDLRFDVFRLDEKEKKWVKLTTLGDRVLFVQQAGSFSALASDLHVAKGNCIIYRRSYFFNSLNNIQSRMLIFHLDQGQGSQRLSNYREYIKLFWPPPKWILGLHNQGMFSCIRLDKLCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M456</accession>
    <name>A0A392M456_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002646</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002867">
        <property type="protein sequence ID" value="MCH81853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M456"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8482" checksum="1EF504E58A1D96D8" modified="2018-12-05" version="1" fragment="single">KTVSGLPPAPNVGTSASGAIEKEPLLYALSRTSAFHEHIPKDELSENGSDFATTAYFKNIINKSVMYLCFGNDKFVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4F0</accession>
    <name>A0A392M4F0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">peroxidase</fullName>
            <ecNumber evidence="3">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0002991</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="9">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010003339">
        <property type="protein sequence ID" value="MCH82191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4F0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31235">
        <property type="entry name" value="PEROXIDASE 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 12" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="11">
        <location>
            <begin position="63"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH82191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15483" checksum="578DBBCF3889D47E" modified="2018-12-05" version="1" fragment="single">MISPFKCSSSTQRVKGTKKPRAALSMCKNNSYKPCYKKLYHVTDHAKAKLQAACLNVFSCDDILVLAARDFVVTGGTTSVGYYWTTCPKAESIVNEKTTIPNLGLRGYEVIDDAKEKLEAVCPDVVSCVDILALAARDSVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M533</accession>
    <name>A0A392M533_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Gag-protease polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003227</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003670">
        <property type="protein sequence ID" value="MCH82421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M533"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="217"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="27"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="175"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="234"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="31"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="42"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="177"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="247"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="298" mass="33999" checksum="CCA4BB8B805EC554" modified="2018-12-05" version="1" fragment="single">EDNLSEIIALIGRKFNKSLNKLQAKWRTNVPDKTSNIRSQSKVKDEDNSDQDKGVRCFECEGFGHIRSECPSYLKKQKRGMTTTLSDSNEENERKTANKAFTGKYETSSNTSDEDLLDEDVAEAHKHLGSEILDEILEAGKMSRDMKGLGFDNHVNKEVKIVPKKTIPPKKKIQEQMSNRMSQHLAQQKNQKSNNMSQHQVQHVSPQHKGYKEPIKRCDHCGRSGHMRSQCFKLHGYPQRPKSPRQSKKEIQAQKVWKSKDTQTKKVSKPKATTSNLMAHTPLKVSSKEDLYFDSGCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5X3</accession>
    <name>A0A392M5X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DEAD-box ATP-dependent RNA helicase 28-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004221">
        <property type="protein sequence ID" value="MCH82812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3293" checksum="150B37C5C4FC843A" modified="2018-12-05" version="1" fragment="single">MEDQISEVLEEEREERILRKAEMEATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M708</accession>
    <name>A0A392M708_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein putative unclassified</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003736</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004381">
        <property type="protein sequence ID" value="MCH82923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218:SF9">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="440" mass="50582" checksum="75FE2F0035702E31" modified="2018-12-05" version="1">MKILSWNCRGLGNPRAVRVLSRLIRVENPHLVFLMETRLSECEMDRIKHRCGFSCGIAVGCSGVGRERAGGVALLWNDQIDISILSFSLNHIHGKVEGEHGAEKKGGNPRTFDQLMVGRDTTSACELHDLGFIGYPFTWSNGREGRNKKKVHVFRFEESWYKDNRCEQLVHTTWSGNRGNCLSKIDPIKSLDNEFVDHRTNEVRKEIVSTERLLQDRSVWSESADDLRKFRELEKTHAELLQKEETLWRQRSRATWLKDGDRNTKFFHGKTSQRKKTNYINKLKDDDDGVWWSGQDNVEKVLLHYFDDLFSSSSLVDIEQTCEAIQKRLSPDYVELCNQRFTAAKIKETVDQMHPLKAPDPDGLSALFYQEXXXXXXXXXXXXXXXXLLHKEAQSQSIHGIQVAINAPKITHLLFTDDSLLFARANQNEANTIIQVLNKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M790</accession>
    <name>A0A392M790_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004470">
        <property type="protein sequence ID" value="MCH82975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M790"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="135"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="285" mass="31664" checksum="9A80F80DCF361040" modified="2018-12-05" version="1">MIKEANELEKVFGTESDYDDEKVEIPILNIVAFVNLPSLYQGVQFQAVHTVTTIPLFRKLDEVSEEGHDNGNENPSAEITKDFDVGIEVEAASEHEFTSSQEYTDGQIEVDLGDSQEANQTNNQVSLNDDDFMKENSNTEEGSSNIEEQFPEDDQILDSRSTASQFPSMPSKGDASETVEDLSSSFLVTRELEKLVSKKHLAIENLPLLTDFLVTHSYVLLKDTSLSNRYKGYAYNCLAELLKFLQTHSVLDVLGSSHSEFVDFSRCIAKIVGLKTHVDSTCGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M901</accession>
    <name>A0A392M901_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Imidazole glycerol phosphate synthase hisHF chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0004800</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006035">
        <property type="protein sequence ID" value="MCH83970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M901"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010139">
        <property type="entry name" value="Imidazole-glycPsynth_HisH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01855">
        <property type="entry name" value="IMP_synth_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701:SF1">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase" evidence="10">
        <location>
            <begin position="30"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH83970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13855" checksum="8FD020F78C41478B" modified="2018-12-05" version="1">MDKYACESVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITKDSEILDDVGNHHVYFVHSYRAVPSDDNKEWISSTCDYGDKFIASIRRGNVHAVQFHPEKSGGKFYLRYRSLELFWYFSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9E3</accession>
    <name>A0A392M9E3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Aminotransferase-like plant mobile domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003626</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004225">
        <property type="protein sequence ID" value="MCH82814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9E3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010073">
        <property type="term" value="P:meristem maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044824">
        <property type="entry name" value="MAIN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033:SF65">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="2">
        <location>
            <begin position="84"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="468"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="475"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="519" mass="59363" checksum="457BBD3B2891AA4D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9G2</accession>
    <name>A0A392M9G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006225">
        <property type="protein sequence ID" value="MCH84076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36785">
        <property type="entry name" value="OS05G0502500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36785:SF1">
        <property type="entry name" value="OS05G0502500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15109" checksum="734DC05826C8C938" modified="2018-12-05" version="1">MQIFVVLVPIVGLGAFIWWAGRDIMKGTCPNCGNDFQVFKTTLNDELQLCPFCGQPFSGKTGMDVFLMFFLPSLSINIKQNSLSICVDGNEFVKESVKFSNQSTTFGQAFDNFSRSRNDKDSGRAIDVEAEIKDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9W2</accession>
    <name>A0A392M9W2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004713</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005904">
        <property type="protein sequence ID" value="MCH83885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9W2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34482">
        <property type="entry name" value="DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34482:SF48">
        <property type="entry name" value="GAG PROTEASE POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="247"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="267"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="287"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="215"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="219"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="324" mass="37166" checksum="DEA0139601C1893D" modified="2018-12-05" version="1" fragment="single">MAASRMNAQMAEAIAMLTNIAARDNAPEREDEVRLERFMKHKPSNFIGGYDPEGAMKWLEEVEIIFDAMRCAEEDKTTLGTYVLREEAKQWWKNVKLRIGVGGVEITWEMFKREFLAKYFPMDFKNKKVIEFMELKQGSMTVAEYAAKFESLCKFSPHYNTVEAENDKCVKFESGLRPGIKHSIGFAEIRDFNTLVAKSRICDDDAKAKNNYYKAMRGKSQDRGKPYEGKGKKSVGKSDEKKKNDGKCYMCGEIGHRYFECPIKEDKCFKCGKYGHKKEACKEKVTCWNCGEDGHKSPECKKPRKTTEKVFALDGGSEVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA46</accession>
    <name>A0A392MA46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004805</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transglutaminase-like superfamily. PNGase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006043">
        <property type="protein sequence ID" value="MCH83975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000224">
        <property type="term" value="F:peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006516">
        <property type="term" value="P:glycoprotein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.620.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050883">
        <property type="entry name" value="PNGase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12143">
        <property type="entry name" value="PEPTIDE N-GLYCANASE PNGASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12143:SF19">
        <property type="entry name" value="PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Transglutaminase-like" evidence="5">
        <location>
            <begin position="44"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="199"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="215"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="273" mass="31770" checksum="718C71F2A2DAC34F" modified="2018-12-05" version="1" fragment="single">MNEIIPRYIYGFLNSGLLLIKYCRSCTVCSRLTRFPRYNDPKKLVETREGRCGEWANCFTLYCRAFGYESRLVAPYGVLTLILDFTDHVWTECYSQFLGRWMHLDPCEAIYDRPLLYEKGWNKKLNYAIAIAKDGVYDVTKRYTRKWHEVLSRRTMVTEPSLSSILTNITNETRRGFAPQLLSIIEARDIEENQQIERSLHSEDDESLSLPGRRSGNEQWRKSRSEIGSDNLSSSACPVRLCVDEHVTKIYNAFRPVLHQFIAEEVTKAEAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAL3</accession>
    <name>A0A392MAL3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein ENHANCED DISEASE RESISTANCE 2 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005369</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006975">
        <property type="protein sequence ID" value="MCH84537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009769">
        <property type="entry name" value="EDR2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31558">
        <property type="entry name" value="CW14 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31558:SF19">
        <property type="entry name" value="PROTEIN ENHANCED DISEASE RESISTANCE 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07059">
        <property type="entry name" value="EDR2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein ENHANCED DISEASE RESISTANCE 2 C-terminal" evidence="1">
        <location>
            <begin position="108"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19097" checksum="6B7954FC13CFC42E" modified="2018-12-05" version="1" fragment="single">MFSTGEISASHADEIGEERRLTPDHCGILPNNCLPCLSSSNAPTVEKKRPLSPDTLSSRRKSLSKLSFKWREGSSDMASLSPKAFKQKLVAGSTIPFCPIEKQTPGSWSPLEPSSFRVRGKNYLRDKKKEFAPSGAAFYPLGADLFLSPRKIDHIARFVQIPAINVPGDIPSIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB79</accession>
    <name>A0A392MB79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Apyrase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005603</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GDA1/CD39 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007345">
        <property type="protein sequence ID" value="MCH84767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000407">
        <property type="entry name" value="GDA1_CD39_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01150">
        <property type="entry name" value="GDA1_CD39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14486" checksum="6463E24C97659ADE" modified="2018-12-05" version="1">MDLESTKMLKHSGRHSPPPESFADKIYQFRGAFLMVALPLLLVTLILYVMPSTSSNESIEDYALTHRKISPDRIPSDSFAVIFDAGSSGSRVHVFRFDRNLDLVHIGKDLEVFLQVYDNDVLASPMQGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBW5</accession>
    <name>A0A392MBW5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cation/H(+) antiporter 18-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005851</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007764">
        <property type="protein sequence ID" value="MCH85010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBW5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098662">
        <property type="term" value="P:inorganic cation transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057290">
        <property type="entry name" value="CHX17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050794">
        <property type="entry name" value="CPA2_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468">
        <property type="entry name" value="CATION/H + ANTIPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468:SF34">
        <property type="entry name" value="CATION_H(+) ANTIPORTER 18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23259">
        <property type="entry name" value="CHX17_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation/H(+) antiporter C-terminal" evidence="6">
        <location>
            <begin position="13"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="177"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="20120" checksum="EE24203B5F6EF9B9" modified="2018-12-05" version="1" fragment="single">LGGTCHVSASNVSYCVSVLFFGGGDDREALAYGARMAEHPDIKLVVIRFLVETNILGEITRVDVGESSSGKSISEDEEFLAEFKLKTASDESVIYEEKIVKDAAETVAAIREFNSCNLFLVGLRPTGELACALERSDCLELGPVGGLLASQDCPTTASVLAMQQYPNGVPTNSGPVMEEHSHEGDTESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEU8</accession>
    <name>A0A392MEU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ARM repeat protein interacting WITH ABF2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006142</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008242">
        <property type="protein sequence ID" value="MCH85298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.930.20">
        <property type="entry name" value="Adaptor protein Cbl, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036537">
        <property type="entry name" value="Adaptor_Cbl_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056694">
        <property type="entry name" value="DUF7792"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46168">
        <property type="entry name" value="ARMADILLO REPEAT ONLY 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46168:SF15">
        <property type="entry name" value="ARMADILLO REPEAT-CONTAINING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25055">
        <property type="entry name" value="DUF7792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7792" evidence="1">
        <location>
            <begin position="14"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="481" mass="52406" checksum="E8A3156DD5018640" modified="2018-12-05" version="1" fragment="single">MMKSPKLEEERRLEEELLIPILMGEHVIKLAEEAKSSKVECRELAKKVEVLCNSIRGVVRVVSGNHQSLNERPIRCMVKELLKNLEKTLALVRKCKNQGGVGVLKHVLTIRSTGDFRKVWNLLESSNGDMMWLLSIFESRGTXISLSPITNNDPILAWVWTYIYTLQLGNPNDRAEAATELGALAQITDRNRFIIMEEGGVLPLLKVLKDSAFPDCQVAAANALANVVSDDQQKIVGFLLNNLAVPVIVQVLSDAVFRVRVSVANLVSAMADQEPLAREEFIRANVTKPLVSLLSIDTVLAEPVAARNGIHSVVQNLSEADSDGSSGRGREADHSPELRNDVKVSCAKALWKLSKGCLLACKKITETKGLLCLAKIVGSESGELRLNCLMAVMEIAAVAESNVELRRGALKSTAPAAKAVLNQLLRVVRQENDSSLLIPAIKSIGSLARNFPGKVPHILGPLVTHLGNKDMNVACEVIVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFD2</accession>
    <name>A0A392MFD2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0007056</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GPI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009916">
        <property type="protein sequence ID" value="MCH86202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFD2"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048029">
        <property type="term" value="F:monosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051156">
        <property type="term" value="P:glucose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469:SF1">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH86202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13505" checksum="6610F746ECA38229" modified="2018-12-05" version="1" fragment="single">LANVDPIDVAKTIRGLNPETTLVVVVSKTFTTAETMLNARTLREWIVSALGPAAVAKHMVAVSTNLALVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVFPLSLQYGFSVIEKYVISYSVAGTSFSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFG0</accession>
    <name>A0A392MFG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ubiquitin carboxyl-terminal hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006666</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009187">
        <property type="protein sequence ID" value="MCH85815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00121">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050804">
        <property type="entry name" value="MCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236:SF36">
        <property type="entry name" value="MATH (MEPRIN AND TRAF-C-LIKE) DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46236">
        <property type="entry name" value="TRAF-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22486">
        <property type="entry name" value="MATH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00061">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49599">
        <property type="entry name" value="TRAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MATH" evidence="3">
        <location>
            <begin position="14"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="274"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="326" mass="37507" checksum="6861470B03B9AF69" modified="2018-12-05" version="1" fragment="single">FGDMEHQESSVEKFEKFTLKIENFSRLDKAILSEPFVLGGFPWMIYLCTGGNVTGDYLSIYLYAVQTANVSEGWSRDVKLKFCVFSLVNTNTTITKRSNYKFNERDNFLGFESFMTLAELCDPNKGFLLNNAFIVGIEVYVCKSRNEKQVNQAANLTASLKPKLEKGQVQIVGELMDFKGLGHIEKAFVPLLNQVCSLHPLLIECQQKRSRQFREWAFTALGRVLYFLKTRKVRDMNDLACKDLQILWEELEPFGFDLRWLEPHVKSALGLRSYLEKVKEAEKLKDNVVALELEMLRVKANLDSAKYLLEAEDFQEIDLDSELGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGQ4</accession>
    <name>A0A392MGQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Aluminum-activated malate transporter 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0007546</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the aromatic acid exporter (TC 2.A.85) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010769">
        <property type="protein sequence ID" value="MCH86686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015743">
        <property type="term" value="P:malate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020966">
        <property type="entry name" value="ALMT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31086">
        <property type="entry name" value="ALUMINUM-ACTIVATED MALATE TRANSPORTER 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11744">
        <property type="entry name" value="ALMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0407">Ion channel</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="154"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="186"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH86686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25374" checksum="7B37AE7556BAE53F" modified="2018-12-05" version="1">MNQEKSCVLVRVWEKLKALPKALMKKVLCICKMSKEIAQDDPRKVIHSLKVGLAISLVSLFYYYQPLYENFGLSAMWAVMTVVVVFEYTVGATLGKGLNRTMATLVAGALGVGAHYLASLSGETGEPILIGFFVFLQAAIASFIRFFPKVKTRYDYGMLIFILTFSLISVSGFRDDEVLKMAHKRLSTIFLGGSACVMISIFVCPVWAGEELHYSIALKLETLGDFLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHU4</accession>
    <name>A0A392MHU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">6-phosphofructo-2-kinase/fructose-26-bisphosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0007623</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010899">
        <property type="protein sequence ID" value="MCH86763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003873">
        <property type="term" value="F:6-phosphofructo-2-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004331">
        <property type="term" value="F:fructose-2,6-bisphosphate 2-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006003">
        <property type="term" value="P:fructose 2,6-bisphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006000">
        <property type="term" value="P:fructose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003094">
        <property type="entry name" value="6Pfruct_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013079">
        <property type="entry name" value="6Phosfructo_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10606:SF44">
        <property type="entry name" value="6-PHOSPHOFRUCTO 2-KINASE_FRUCTOSE 2,6-BISPHOSPHATASE LONG FORM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10606">
        <property type="entry name" value="6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01591">
        <property type="entry name" value="6PF2K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="6-phosphofructo-2-kinase" evidence="4">
        <location>
            <begin position="88"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="19"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH86763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="14985" checksum="E78EA78DFF1E20BE" modified="2018-12-05" version="1">MEVNDLDPSKAYGSPRMVKSQSVGTMSTLRKEDGQRGPFVDRGVGFPRFQKSSSLKAFTTVLSLDTDTENSFPAAAGAVAAGAIADQMLGPKEDKHLAIVMVSLPARGKTFTAAKLTRYLRWLGYVWISNGAELNEMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI30</accession>
    <name>A0A392MI30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007579</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010835">
        <property type="protein sequence ID" value="MCH86719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF196">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="29333" checksum="B616646BFACF5FD1" modified="2018-12-05" version="1">MLGIPLENDDDGEHSRIKTMKETPVEHVKEGKILRGCLSRTETMKETPIEHIKEGKMLSRTKTMKDSPSLYLKDGKTLMEHNTIRPEKHNSAISMIKSRKLSRTSNNVKTEEALSHHKSFKKMAGLSDRNSEFDKFAVQIANKCNGLPMSIITTARALKNQSRSRWEDAFRKLEWQKFTGAPELSTRLSYDHLDEELKCTFLTCVCMGPDALIMDLMRYCIGLGFLLEIYTVKEARSRVYALVARLKVSGLLSESFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIB5</accession>
    <name>A0A392MIB5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Vacuolar fusion protein MON1 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006837</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays an important role in membrane trafficking through the secretory apparatus.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MON1/SAND family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009518">
        <property type="protein sequence ID" value="MCH85984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016192">
        <property type="term" value="P:vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043972">
        <property type="entry name" value="FUZ/MON1/HPS1_longin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043971">
        <property type="entry name" value="FUZ/MON1/HPS1_longin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004353">
        <property type="entry name" value="Mon1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13027">
        <property type="entry name" value="SAND PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13027:SF7">
        <property type="entry name" value="VACUOLAR FUSION PROTEIN MON1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19036">
        <property type="entry name" value="Fuz_longin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19037">
        <property type="entry name" value="Fuz_longin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01546">
        <property type="entry name" value="YEAST73DUF"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FUZ/MON1/HPS1 first Longin" evidence="2">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="FUZ/MON1/HPS1 second Longin" evidence="3">
        <location>
            <begin position="108"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19343" checksum="4CF1EB85ABBF18F0" modified="2018-12-05" version="1" fragment="single">VVFLVKGPIYLVCISCTEEPYESLRGQLDLIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDTVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDIADSGVLFAILMCRHKVISLFGAQKASLHPDDMLLLANFVMSTESFRQDDTYLLLLTTNSDAFHHLKDCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIM7</accession>
    <name>A0A392MIM7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007887</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011372">
        <property type="protein sequence ID" value="MCH87023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="313"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="375"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="313"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="378"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="402" mass="45915" checksum="3C0DDFE3D21EE332" modified="2018-12-05" version="1">MPFSEFAMGVFDWLRLAPSQLHPNSLTFIRAFEIMCEYLEVEPTIPMFFRVFKLQRQPVKNEQHGWVSLKQSTKFFRMFVDSVRGFKERYYIVKPITPLAVDSLYRTKLLTNEDGSPRLGEDGVQMTKRVTRFPFHWTRRHFDQPTDYYLIKDEAFSEPELAGLEKLKKYVGSFKPVYNMVDFASELVKILADQKAPKRGKKKLSGRTSAVLDQSMLAGSSSPGGVSSSQGGSNLGSPVVMQPPPKKQREEDPIIDVEQFEKLREKNEKLAAKVLKLKGEMIDLRGKQENFAAQAKENRELKAALDKVTKDLEDQSEDVKRLERENGELRSAMSPAADETDSTRDLATRAELVARGTGVLREVVDGQIIVPEKYKDMELDELEADQMDAEDEDDDEQEEEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIT8</accession>
    <name>A0A392MIT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cyclic nucleotide-gated ion channel 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011327">
        <property type="protein sequence ID" value="MCH86995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7791" checksum="988932316BC08701" modified="2018-12-05" version="1" fragment="single">FGLDGQNLRYITDXXXXXXXXXXXXXXXRYYSSNWRTWAAVNIQLAYRRYMPRTRGPVPPVRDNGGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJZ1</accession>
    <name>A0A392MJZ1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon Copia-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012061">
        <property type="protein sequence ID" value="MCH87369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF97">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="1">
        <location>
            <begin position="20"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6745" checksum="03FDE3FA7A45FA0F" modified="2018-12-05" version="1">MVRANPPDPVLDNSSPYFVHPSDGPSSVIVTPLLTGSNYHSWSRSMKHALGAKMKLYFVDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKI0</accession>
    <name>A0A392MKI0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008742</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013060">
        <property type="protein sequence ID" value="MCH87861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="35232" checksum="B0457B39947A9D10" modified="2018-12-05" version="1">MSSAYHPETDGQTEVINRCVESYLRXFASDQPKTWSHWIPWAEFWYNSTYHVSIGKTPFEVVYGRQPPTLIRFLSNETKVAAVALELSERDEALKQLKMHLLRAQEQMKNYADSKRRDVKFEVGEWVFLKLRPHRQQSVAKRINPKLAARFYGPFKILDRIGAVAYRLDLPIHSKIHNVFHASLLKKAVGDYQVQGDLPQELEIADAEDIYPDKVLGTRVTVKAGVSIPQSLIQWKNKSLEDVTWEDDDFLKGXFPQFSLEDKANFKEVGVDRDVDNEMGFAIGPKPRVWRVYTRKRGKDKIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKR4</accession>
    <name>A0A392MKR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008958</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013450">
        <property type="protein sequence ID" value="MCH88077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="152"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19084" checksum="0CF1787CF4725EC3" modified="2018-12-05" version="1" fragment="single">MGNRISILCLCSAGAGEISGRFYNRFALLSKKHDKAICNSISYVRPNPPGFSGDTFLEEDDDDTLVTFRSVFGATVSANSSSTPSIFLDDSLQHSTVLDSSASFESXXXFTSTMMHPQHQHQNDDPRSSSVCGSIEKGLSWSPFNPVLNDDDSIEKSSEHVKKIKKPNKISLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLR2</accession>
    <name>A0A392MLR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014162">
        <property type="protein sequence ID" value="MCH88430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9243" checksum="0D6A75ED1D482755" modified="2018-12-05" version="1" fragment="single">MKLNNSNIAKAIDKMVPTFCYARGIILLFLTVLAHAHLVSSHNCDWPLESHGHATIEDYDYVFRLTGYPHPGDPDRASYVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLZ5</accession>
    <name>A0A392MLZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="16">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0009106</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the protein kinase superfamily. Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013746">
        <property type="protein sequence ID" value="MCH88223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002229">
        <property type="term" value="P:defense response to oomycetes"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000240">
        <property type="entry name" value="Lectin-domain containing receptor kinase A4.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052059">
        <property type="entry name" value="CR_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47973">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 16" id="KW-0675">Receptor</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH88223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="23190" checksum="E45792C7D38A0F04" modified="2018-12-05" version="1">MQGVLRDGTQVAIKSLSVESKQGTHEFMTEIDMISNIQHPNLVKLIGFCIEGNHRILVYEFLENNSLASSLLGSKSTCVRLDWPKRAAICCGTASGLSFLHEDAQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWVYSSILVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMJ9</accession>
    <name>A0A392MMJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014766">
        <property type="protein sequence ID" value="MCH88752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36333">
        <property type="entry name" value="DIMETHYLALLYL, ADENOSINE TRNA METHYLTHIOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36333:SF1">
        <property type="entry name" value="DIMETHYLALLYL, ADENOSINE TRNA METHYLTHIOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8203" checksum="9C9D07A1128D2B34" modified="2018-12-05" version="1" fragment="single">MATLNFGIATTNVNTGAAGYRTXRTKWNRHNPTTIVCIGPGPVGPLSWDPEGILGQPNTGHLARLEFKRRMEKDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMS4</accession>
    <name>A0A392MMS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008457</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012494">
        <property type="protein sequence ID" value="MCH87584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="15923" checksum="21184F4C331895A4" modified="2018-12-05" version="1">MNIPWVNYQVTKVPVKVIIKPTLDFANRNISVSTVVNGGRLFGCSVSLGLTLPSSPTFDASVVLYLGRIDAALIAKPQTMKFNGNLNTKLEIGYHVTMKHDNKHRQSMTKGTASLCQSDGARRNSVNTGGIFTVGRKVELESLDLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN15</accession>
    <name>A0A392MN15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine protein kinase IRE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015136">
        <property type="protein sequence ID" value="MCH88932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12630" checksum="3D504EB6FDED3B4F" modified="2018-12-05" version="1">MFIPSAAESQDTSYFMSRYIWNPEDEHCAGASDFDDITETYSSGSGSGDSLDEDGDVCGSLRGFNNNGPPQNLEVQYSFSNFSFKNLSQLVSINYDMMLKNSKDSPNDSNPSVPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN57</accession>
    <name>A0A392MN57_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GTD-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0009263</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014054">
        <property type="protein sequence ID" value="MCH88379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080115">
        <property type="term" value="F:myosin XI tail binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007656">
        <property type="entry name" value="GTD-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31422">
        <property type="entry name" value="BNAANNG28530D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31422:SF1">
        <property type="entry name" value="GTD-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04576">
        <property type="entry name" value="Zein-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51775">
        <property type="entry name" value="GTD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GTD-binding" evidence="6">
        <location>
            <begin position="14"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH88379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="410" mass="46318" checksum="A8EEA753894DD272" modified="2018-12-05" version="1" fragment="single">MAETTMMCRTRSDASVAGVADTLHAQQQLLQKLYAELDDEREASAIAAREAMDMILRLQGEKAVVDMEASQFKRMAEEKMDHAEATLEAFDELLYEKETEIASLKFQLQAYKDKLVSLGCDLNASEFQYVHSNSSDQSSSMDMIRLKSMPPIPFKKILTRRESLARKSERSSNSAPVSGDQEPSLLCGSGTLDSYWNKIKMLHEQVKLISDCNHTGAKSCSIFSHASSKITCECGQTHKLNSTNSDEVVNHGESTRDSKVFSDHRGSANVHDVLEVPQATRKHERRIKLAKWNSVADIRLTKQDSVSEAMVESYFKHDADKKKGKATIIGKKKERMGVDSNSQTEVHQKIARLQRQRTSRRYDEITRDFELGDGEEQLRLLKDIKTELKLIQSEMRILKTKNATHVDDAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNI9</accession>
    <name>A0A392MNI9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cysteine-rich receptor-like protein kinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009814</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015109">
        <property type="protein sequence ID" value="MCH88921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="342" mass="38989" checksum="326C753A7AC44D20" modified="2018-12-05" version="1" fragment="single">SQNRALRRPPLRVAPSADSTEFFSDFLLPRFQGTFNKGLKEQLPVGLWCLVGDFNSVVSSNERKGMDLGRSGSEMNEFRVFIDRMKLIDVPLAGKKYTWFSADGKKRSRLNRFLMSEGLLSVWGVVSQKVGDRDILDHCWKGHIFKEKLRLLKGLLFLAPNFGIRSGKKRAYFVKNPDVNGFKKDANSRYFHNTLNYNRVRSRIVALKESNFTRPTLDGVDFQQLSLEDNLHLIAPFIVDEIKEAVWSCDGNKSLGPDGFNLNFFKSCWNVLEKDIVDFMNEFHTNSKLPKAITSSFLTLVPKKDMPRSLNDFRPISLIGSLYKILAKVLAKVIRTGPASNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP08</accession>
    <name>A0A392MP08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Solute carrier family 25 member 44-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009846</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015171">
        <property type="protein sequence ID" value="MCH88953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46080">
        <property type="entry name" value="MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46080:SF8">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 25 MEMBER 44-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="Solcar" evidence="4">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="repeat" description="Solcar" evidence="4">
        <location>
            <begin position="71"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="18252" checksum="44EF85FC1E540C61" modified="2018-12-05" version="1">MRTDGPKGLYRGFGISVVTYAPSNAVWWASYSVAQRMVWGGVGYYLSNKKGGEGSDRSINGANVLRPDTKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWTACYRGLGPRWASMSVSATTMITTYEFLKRLSAKNQEVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS15</accession>
    <name>A0A392MS15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cyclin-dependent kinase inhibitor 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010737</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CDI family. ICK/KRP subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017015">
        <property type="protein sequence ID" value="MCH89835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005654">
        <property type="term" value="C:nucleoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004861">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051726">
        <property type="term" value="P:regulation of cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.365.10">
        <property type="entry name" value="p27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003175">
        <property type="entry name" value="CDI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044898">
        <property type="entry name" value="CDI_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044275">
        <property type="entry name" value="KRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46776">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02234">
        <property type="entry name" value="CDI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017811">
        <property type="entry name" value="CDK_inhib_pln"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0649">Protein kinase inhibitor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclin-dependent kinase inhibitor" evidence="6">
        <location>
            <begin position="45"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="18"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10486" checksum="B329F09E20F86A13" modified="2018-12-05" version="1" fragment="single">RSTRETTPVHLIRVSDTIRTPSSTTKRTFSTGAHRSPEQATRSVIPSTKEFDEFFAKHEAAQQKAFMEKYNFDPVTETPLPGRYEWEKLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS33</accession>
    <name>A0A392MS33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017951">
        <property type="protein sequence ID" value="MCH90261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13462" checksum="0728C2279A3D0825" modified="2018-12-05" version="1">MAPRVKTSIEGLTFASFYHMLVLSFFVTVELLPGHDSFKAIPIYMLLYLMASCFELFFVFVFTRNIPNREANAAFEFFGLMLGNMTMSCLMDAMIHWILLVIIFIIWDGIQTMLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS86</accession>
    <name>A0A392MS86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Brefeldin A-inhibited guanine nucleotide-exchange protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010793</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017124">
        <property type="protein sequence ID" value="MCH89889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032817">
        <property type="entry name" value="Mon2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663:SF381">
        <property type="entry name" value="BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663">
        <property type="entry name" value="GUANYL-NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16206">
        <property type="entry name" value="Mon2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mon2 C-terminal" evidence="2">
        <location>
            <begin position="45"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="231" mass="25928" checksum="9F82143BC5E5DA04" modified="2018-12-05" version="1" fragment="single">EGELGSSRNKGKETFGKISTPSPRTGKEGRQDNGEVTDKDDHLYFWFPLLAGLSELSFDPRPEIRQSALQILFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSSQVSEVETDGELDQDAWLYETCTLALQLVVDLFINFYNTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVLSLKDAANATLPNFSFLDGGDFVTGNER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSX9</accession>
    <name>A0A392MSX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Long-chain-alcohol oxidase FAO4A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018698">
        <property type="protein sequence ID" value="MCH90617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13666" checksum="4B1580A5B13225EF" modified="2018-12-05" version="1">MENNNRESNSNSRSSSFRLGLGMNEAKVHTVVELGGFETKSTKSLLCDVGDFEESEKQQQQQKQLPLKNSLSSRQMKSLVALCDTMLPSIIDNNVVASSDEYVNNFYRISASMAGTPERVTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUC6</accession>
    <name>A0A392MUC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protease Do-like 1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011191</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017984">
        <property type="protein sequence ID" value="MCH90278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051201">
        <property type="entry name" value="Chloro_Bact_Ser_Proteases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343:SF2">
        <property type="entry name" value="PDZ DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343">
        <property type="entry name" value="PEPTIDASE S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="13146" checksum="2EB6C07732C26D77" modified="2018-12-05" version="1" fragment="single">FGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWB2</accession>
    <name>A0A392MWB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012766</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021264">
        <property type="protein sequence ID" value="MCH91836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8477" checksum="7557F604D20F1EA8" modified="2018-12-05" version="1">MHLKFNMEPKTMFVKKDFVENPEFEAFKAEVKEELSAQKSEIKEIMKNQKTVAAKQEEMSADLKAILTILSKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWJ1</accession>
    <name>A0A392MWJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">WAT1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0012808</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021364">
        <property type="protein sequence ID" value="MCH91877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050638">
        <property type="entry name" value="AA-Vitamin_Transporters"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32322:SF2">
        <property type="entry name" value="EAMA DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32322">
        <property type="entry name" value="INNER MEMBRANE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11586" checksum="A990D0708268CE85" modified="2018-12-05" version="1">MDMWQVIIDSQPLTVAVLAALLFGESIGAVGAAGLVLGVVGLVLLESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWVRFISLILPRVFDNFIWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWJ6</accession>
    <name>A0A392MWJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012602</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020927">
        <property type="protein sequence ID" value="MCH91673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6474" checksum="BFD204C3D67171CA" modified="2018-12-05" version="1">MLTFDGTLFHNSTFNAASVCVSIAAASLLFCSASYAEWTEKRPAEFGFHLRLSLLLLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYP5</accession>
    <name>A0A392MYP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ethylene-responsive transcription factor ERF003-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0013382</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022700">
        <property type="protein sequence ID" value="MCH92443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.730.10:FF:000001">
        <property type="entry name" value="Ethylene-responsive transcription factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050913">
        <property type="entry name" value="AP2/ERF_ERF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31194:SF69">
        <property type="entry name" value="AP2_ERF DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31194">
        <property type="entry name" value="SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="7">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="96"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH92443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21332" checksum="59330FCFA7B9EEDB" modified="2018-12-05" version="1" fragment="single">MAKPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMSKQQSPPQKEPQHVSTQSFNSSINNNTFVYGNDIGGTSGETSLIRWLDEGNSFVGFEGQQVEVSNQQFQPVLEDDHIEQMIQELLDSGCSIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0T4</accession>
    <name>A0A392N0T4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Misato-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024381">
        <property type="protein sequence ID" value="MCH93202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0T4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007005">
        <property type="term" value="P:mitochondrion organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049942">
        <property type="entry name" value="DML1/Misato"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029209">
        <property type="entry name" value="DML1/Misato_tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13391">
        <property type="entry name" value="MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13391:SF0">
        <property type="entry name" value="PROTEIN MISATO HOMOLOG 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14881">
        <property type="entry name" value="Tubulin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="Tubulin nucleotide-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DML1/Misato tubulin" evidence="1">
        <location>
            <begin position="72"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15991" checksum="8C4B8F60540970B5" modified="2018-12-05" version="1" fragment="single">MSSRGTLYKEVAPTTSDIFTWTGEVSTQASEPHKKNLFLQRLYEEENLNMVNENSGSSSEDQDKDITECLENEVQFWTDYSKVHFHPQSLYELNGVWTDVEDFDNYGIGRDSFTWASQGEEISERLRFFIEECDHVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1A2</accession>
    <name>A0A392N1A2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription factor ORG2-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0014311</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024762">
        <property type="protein sequence ID" value="MCH93362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1A2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BHLH" evidence="5">
        <location>
            <begin position="64"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH93362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11125" checksum="8564F79231776A4C" modified="2018-12-05" version="1" fragment="single">MLAISPPLFSTIGWPFEGTISHNQHKDHFYKDITIDQLFHIKNQVEAENSTDPSQAISCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3K9</accession>
    <name>A0A392N3K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M1 family aminopeptidase N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027241">
        <property type="protein sequence ID" value="MCH94397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.50.10">
        <property type="entry name" value="Peptidase M1, alanyl aminopeptidase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012779">
        <property type="entry name" value="Peptidase_M1_pepN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024601">
        <property type="entry name" value="Peptidase_M1_pepN_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037144">
        <property type="entry name" value="Peptidase_M1_pepN_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46322">
        <property type="entry name" value="PUROMYCIN-SENSITIVE AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46322:SF1">
        <property type="entry name" value="PUROMYCIN-SENSITIVE AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17432">
        <property type="entry name" value="DUF3458_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M1 alanyl aminopeptidase C-terminal" evidence="1">
        <location>
            <begin position="9"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="19297" checksum="0C37202E7BB13FEB" modified="2018-12-05" version="1" fragment="single">MLSLVDDFQHNKPLVLNSNFLDGFRRILSDSSLDKEFVAKAITLPGEGEIMDLMKVADPDAVHTVRSFIRKQLASELRSEFLSTVENNRSSGEYVFDHSNMARRALKNIALAYLASLEEQEFTNLALQEYKTATNMTEQFAALASVAQNPGKTRDDVLADFYHKWQNDYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4M4</accession>
    <name>A0A392N4M4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015085</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026576">
        <property type="protein sequence ID" value="MCH94129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF40">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RGA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="203"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="285"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="316" mass="35596" checksum="16E1F2837D636467" modified="2018-12-05" version="1" fragment="single">MNSEEPLVNGLGIYINHLENNLTQINEKVQERSHFGWLQKVKDVVMNLSYLVEDLHYKRSTNASTKSLIRSSLSLKKRFKAILLVKKATQELKRLIEIEAKGEEAVISDTNVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNKNNSDVGPVIVIVGVSGLGKTKLARLVCKDRQVKARFQPIWINNSDVESIANCVTESRHEKDVLLIIDDLQIENENDDLYKLQQKLTEAVGGHTDMAILITTRSNKVANKIAARHVLQLQRLNGEESWSLFQHIHGPITSTKKDQSTTEPEHEPERENVRDCGGVPLLIVII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4P5</accession>
    <name>A0A392N4P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ankyrin repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0015732</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028095">
        <property type="protein sequence ID" value="MCH94767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24186:SF37">
        <property type="entry name" value="PGG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24186">
        <property type="entry name" value="PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="114"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="119"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="152"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="186"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="203"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="268"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="31371" checksum="FF3411A0EB8FC1D7" modified="2018-12-05" version="1" fragment="single">MPETEIVKAMTEINDHGPVLHLCVCYNHLEALKILVESMRGDIDQILSSKDREGNTVLDLAIKRGQIKMIKYLISLSEVSDTINTSKSEALRALDMLEDYPRDFISHTIQHISNEERAPTSSNISSAQVQQDHATQPNHFPQQLQINDHEQSQTPSPNNDPPQNQQPSQNIDPPQSLPINDPLVQSPITHPLQLTNPFPQNYPSQPSSHNPSPSNTPQHPHSPSPHNDPSQPSSHNPSPSNVPLQPPPFSPSDDPSQPSPTPRIANDPQHERTRWDTVEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N671</accession>
    <name>A0A392N671_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0016055</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028919">
        <property type="protein sequence ID" value="MCH95082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF28">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="8"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="3">
        <location>
            <begin position="269"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="193"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="344" mass="38633" checksum="5767784A5180710A" modified="2018-12-05" version="1" fragment="single">MSHMEVASELWNDIKERFSVVNGPRIQQLKAELADCKQKGSTIMTYFXKLKKIWEELANYEQIPSCKCGLCTCNIGSVLVKKREEERVHQFLMGLDDTTYGTVRSNLLTQDPLPPLNRVYSVLVQEERVRTITRRKEETSEVMSFAVQVGNRTREKIEGIDKNMACTHCNRSGHDPNNCFELKGYPEWWGERPRNTGQGAKRGKAWKASGGRGRGGTIKANVMQATSSNSAENINNLTNEQWEVLLNLVNNMKVGATEKISGKHLSIQWIIDTGATHHMTGQLNYLSKIQDVKPCPVSLPNGKHMVATKEGTVALCDSLSLTNVLYVPDLHYNLISVSQLLDNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6J3</accession>
    <name>A0A392N6J3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029223">
        <property type="protein sequence ID" value="MCH95212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14894" checksum="88EB7177109C3C5B" modified="2018-12-05" version="1" fragment="single">KSDDGHASNVQENPIPLLILFLFGEMRNQRRREGWRRREHNGSEENTMMDGDVGEEDDDGCEVFRRFALWFRVEFRALSWLLLVPTSDGGSFXVGVVLVVLVWMVLRVFRDWHWCYRNSSFVKNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8K0</accession>
    <name>A0A392N8K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031020">
        <property type="protein sequence ID" value="MCH95903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35507">
        <property type="entry name" value="OS09G0488600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35507:SF1">
        <property type="entry name" value="TMF_TATA_BD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7746" checksum="483BFB0683BE483A" modified="2018-12-05" version="1" fragment="single">DQASSARTIGGGLTDKLAFAWNLFPPIHRFLIVAVIGAAAAAAKSQKNQEILNLKKSVEFRCLQLHQSTVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9L1</accession>
    <name>A0A392N9L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017337</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032123">
        <property type="protein sequence ID" value="MCH96352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="288" mass="33495" checksum="4FF6D4E6F27180DB" modified="2018-12-05" version="1">MIVYEFGGREEDTFNNFKETKDDDDHIILHSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIFAFGGNTQVGQVYDTSKNKPEWEDMTIPFLDTPPAAEFITGEVTSRCPIVSHPVMSDPKNNRLILYFADQCCLYAYYPDNDKKSQWKCLDNDLKTLPLWNQQLVDDVIYYFGPPYTFLAYDITQRKWLNVSWPEKKLQDCDMFFTDMTQMIHLGDXIMCLAISYXPPAXIGPLLQFLRFRVIRVDDDHVQLTPISYHRFNTHPGRGWIFTPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA07</accession>
    <name>A0A392NA07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032944">
        <property type="protein sequence ID" value="MCH96677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051824">
        <property type="entry name" value="LRR_Rcpt-Like_S/T_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006:SF73">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="10943" checksum="5493B2122AB49988" modified="2018-12-05" version="1" fragment="single">MAISIGIARGVQFLHTGVAPGIFGNNLKIENILLDDSLNAKVSGYKIPLPSKSTVNEQSATNQIASTSNAEKEDIYQLGVILLEVITGTQIASSSDVEQLKDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAE7</accession>
    <name>A0A392NAE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chalcone synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0017640</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032881">
        <property type="protein sequence ID" value="MCH96652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030639">
        <property type="term" value="P:polyketide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000025">
        <property type="entry name" value="Chalcone synthase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001099">
        <property type="entry name" value="Chalcone/stilbene_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018088">
        <property type="entry name" value="Chalcone/stilbene_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011141">
        <property type="entry name" value="Polyketide_synthase_type-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877:SF14">
        <property type="entry name" value="CHALCONE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877">
        <property type="entry name" value="HYDROXYMETHYLGLUTARYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00195">
        <property type="entry name" value="Chal_sti_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00441">
        <property type="entry name" value="CHALCONE_SYNTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Chalcone/stilbene synthase N-terminal" evidence="4">
        <location>
            <begin position="1"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH96652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17793" checksum="39B078E9B4F0917D" modified="2018-12-05" version="1" fragment="single">MIKKRYIHLTEEILKENPNISTYEESSLNARQNILINEVPKLGEKAASKAIKEWGRPKSEITHLIFCSTSGVDMPGADYQLIKLLNLNPSTKRFMLYHQGCFAGGTVLRLAKDLAENNIGARVLVVCSEITVVSFHPDTTIERPLFHIVSASDTILPNSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCC3</accession>
    <name>A0A392NCC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017734</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033123">
        <property type="protein sequence ID" value="MCH96745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF160">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="12"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17611" checksum="35FCF28286EE4759" modified="2018-12-05" version="1">MSSSISSSSRSRKSDVFLSYHDKDTCKSFASDLYSALTQAGLVVDINHNNLTSGDQTNFSAIEASRTSIIIFSSNFDASTWFLEELEQILECGRTIGQVVLPVFYVVDPSDVRRQVGIFGKAFEDLIAQRILTNNESMRYKEALIEASSIAGFLVMSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCI7</accession>
    <name>A0A392NCI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zeaxanthin epoxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0017880</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the 3-hydroxybenzoate 6-hydroxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033556">
        <property type="protein sequence ID" value="MCH96889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044560">
        <property type="entry name" value="MOase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45934">
        <property type="entry name" value="FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45934:SF9">
        <property type="entry name" value="FAD_NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding" evidence="4">
        <location>
            <begin position="18"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH96889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="18844" checksum="044388037B4E6C57" modified="2018-12-05" version="1" fragment="single">LRSSKLIRAQSSDVQKEHVVIVGGGIAGLATALSLHRLGVRSLVLEQSESLRTGGTSLTLFKNGWSVLNSIGVANYLRTQYLEIQGMVVKSEDGRELRAFNFKEEDESQEVRAVERRVLLETLAAQLPPDTIQYSSRLVKIEPSSNGDTLLEFTNGSKLLAQGATEFDVLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDF5</accession>
    <name>A0A392NDF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">G2/mitotic-specific cyclin-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034405">
        <property type="protein sequence ID" value="MCH97229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11069" checksum="90B693A39316632C" modified="2018-12-05" version="1" fragment="single">MLARKNLKLRSNLGNSNGFADSIFVDDEHKPAEDQPVPMALEQIEQMLSESDQMEEVEMEDIMEEPILDIDASDENNPLAVTEYIEDLFSYYRKVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDU8</accession>
    <name>A0A392NDU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036200">
        <property type="protein sequence ID" value="MCH97902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15611" checksum="DC5510F2DEA5B924" modified="2018-12-05" version="1" fragment="single">MTLEESLQGLRKWLCGRCMTIRTLSRACHHSDGLTRVTLGPGEVWSHIVGILKPSTKDLDTLCAKEGLVLDASLLERVLQVPICTVKSIPHSCRLVFSQALKDALYKVVVEPSSIGAWVQLLLLPRCTLQVVKPQNRRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE41</accession>
    <name>A0A392NE41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Protein RALF-like 19-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0018464</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the plant rapid alkalinization factor (RALF) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035040">
        <property type="protein sequence ID" value="MCH97469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005179">
        <property type="term" value="F:hormone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019722">
        <property type="term" value="P:calcium-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040008">
        <property type="term" value="P:regulation of growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008801">
        <property type="entry name" value="RALF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33136:SF89">
        <property type="entry name" value="PROTEIN RALF-LIKE 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33136">
        <property type="entry name" value="RAPID ALKALINIZATION FACTOR-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05498">
        <property type="entry name" value="RALF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0372">Hormone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="5 7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017182662" evidence="7">
        <location>
            <begin position="25"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH97469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12623" checksum="4F247380F86D7316" modified="2018-12-05" version="1">MESKRGIIILLFALTLALAMVTEAKIHSFSGIIPIANSDLIEDDNEFLMSSEENQRLLRGRRGFISYGALRNNQVPCGRRGRSYYNCNRRGRANPYRRGCTRITHCARDTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEK8</accession>
    <name>A0A392NEK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinesin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036424">
        <property type="protein sequence ID" value="MCH97991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="144"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30170" checksum="BFA3300F91BB5254" modified="2018-12-05" version="1" fragment="single">EIVRIRDGVDGIGGGWFGDCVQRKVGDGSETFFWTDTWQDGTPLCVRFRRLFDLSIHKSSTVAELFSLGGGWRSDVGVAETAVDVGGGVVXYEGVGGATWVWRRQLWTWEEELLGECQALLHNFILQVQSPDLWQWRPDPIRGYSVRGAYQILTSHLPVSVDAVDDLIWHKQVPLKVSILAWRLLRDRLPTRVNLASRGIITPDVQSCVAGCEDMESAQYLFISCRTFDSLWSSVRSWIGVFSVDPHNLADHFLQTSYFKLYFMLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF54</accession>
    <name>A0A392NF54_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">A2U01_0018177</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">cv. 10/8</strain>
            <tissue evidence="22">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="17 24">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16 24">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="19">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010034300">
        <property type="protein sequence ID" value="MCH97184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033612">
        <property type="term" value="F:receptor serine/threonine kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009791">
        <property type="term" value="P:post-embryonic development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001424">
        <property type="entry name" value="Protein kinase superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000540">
        <property type="entry name" value="Receptor-like protein kinase HAIKU2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050647">
        <property type="entry name" value="Plant_LRR-RLKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056:SF41">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN KINASE HAIKU2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 18 19" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10 22" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="13 20" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 18 19" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 22" id="KW-0675">Receptor</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 19" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 20" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 20" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="20">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="21">
        <location>
            <begin position="173"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="22">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="MCH97184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="366" mass="40564" checksum="B4CCCDC646A39E28" modified="2018-12-05" version="1" fragment="single">SLNNVDLSRNLLSDEIPASLGLLPALNSLNFSRNELSGEIPESLGSLKLSLFDLSHNRLSGKIPQALTIQAYNGXXXGNPRLCTLDAIGSFRRCSERNGMSKDVRALLLCFIVALVLVLCFLGVYLKLKKMKGKEEKREGNKYGRERSLKEESWDVKSFHVLSFSEDEILDSVKQENLIGKGGSGNVYRVTLANGKELAVKHIWNTDFGSRKKSWSSTPMLAKRVGGGSSRSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTNGKIELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVNANAIKDSTHIIAGTHGYIAPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG17</accession>
    <name>A0A392NG17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TATA-binding protein-associated factor 2N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0019493</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037721">
        <property type="protein sequence ID" value="MCH98491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48031:SF2">
        <property type="entry name" value="RNA-BINDING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48031">
        <property type="entry name" value="SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RRM" evidence="4">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="5">
        <location>
            <begin position="91"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="108"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="108"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="132"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH98491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19460" checksum="3B33314E983FE944" modified="2018-12-05" version="1" fragment="single">MKFQVFFLQIMMERDTGRPRGFGFITFADRRGMEDAIKEMDGREIGDRIXXXXXXXXXXXXXXXXXRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGSFSSRPRFGGAGGHGDRLGERERYIDDRYDGGRYGDRDRLDTRDYKYSGRDRYASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGT6</accession>
    <name>A0A392NGT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AP-2 complex subunit mu-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019981</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039007">
        <property type="protein sequence ID" value="MCH98972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1170">
        <property type="entry name" value="Mu homology domain, subdomain B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036168">
        <property type="entry name" value="AP2_Mu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028565">
        <property type="entry name" value="MHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00928">
        <property type="entry name" value="Adap_comp_sub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49447">
        <property type="entry name" value="Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MHD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4843" checksum="32CD05ACD7B588F3" modified="2018-12-05" version="1" fragment="single">VPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH47</accession>
    <name>A0A392NH47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mitochondrial-like inner membrane protease subunit 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037601">
        <property type="protein sequence ID" value="MCH98445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053307">
        <property type="entry name" value="Mitochondrial_IM_protease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47040:SF1">
        <property type="entry name" value="MITOCHONDRIAL ATP-INDEPENDENT INNER MEMBRANE PROTEASE SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47040">
        <property type="entry name" value="OSJNBA0068L06.9 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6543" checksum="10A952158C833849" modified="2018-12-05" version="1" fragment="single">DVVVLKNPEKPEDYLVRRLAATEGYEMASTDEKDESFVLDKDQCWVVAENEKLKAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI39</accession>
    <name>A0A392NI39_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aspartic peptidase DDI1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019908</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038821">
        <property type="protein sequence ID" value="MCH98899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF31">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="180"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="192" mass="21662" checksum="E4F9124F5AA2093A" modified="2018-12-05" version="1">MGELQEQREQEVLAEECTMFLQRKIPPKREDPGIFTVSCCIGKATERALCDLGASISLMPLSFLKKWNLGKLSTTEVMELVLADQSTLKPEGIIKHVLVKIKDMVFSVDFVIVDIEEDANIPIILGRPFLATSRALMDMETGELTLKMGDKERTIKVDKDEREWCCKIDLRSKSKTSSDTEADMEELEEGMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLD1</accession>
    <name>A0A392NLD1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020943</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041756">
        <property type="protein sequence ID" value="MCH99928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15050" checksum="185034692EFEFD49" modified="2018-12-05" version="1">MTSAVVLGSQSKYKGPSFWNEKFDFDAFMNKTFSFEENVVTLRRMGPSQVGNFGMAYELQVKELTAEKDAWEKEKKNHDIEVYNLKVDQAAYFHEGLELAAAEVKCLFPDLDWAILERASSEKEVKDRVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPI2</accession>
    <name>A0A392NPI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022805</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047063">
        <property type="protein sequence ID" value="MCI01777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="21119" checksum="DCE3D8B319BB7B79" modified="2018-12-05" version="1" fragment="single">MSRHPDTEQVWSRIWKLGVMERVRSFVWLVLWDRLLTNSVKHRMGLSSPLVPVNKRSMFFMQNLKDWVSDNVQNLEKGSLDVAWCDLWXXXXXXXXXXXXXXXXESNFVRPSNPVQHVIKLCEDYRKAVNTNELVFHHNRVVSYIGWKPPKVQIVKLNVDGASNNGKRAGCGGVIRGNQGELLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPJ6</accession>
    <name>A0A392NPJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046937">
        <property type="protein sequence ID" value="MCI01733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5244" checksum="E5F34025535D2AD5" modified="2018-12-05" version="1" fragment="single">FEGCTIAGKKSDKVVSDDLLKDEIVSEQLTRDWQASSCGLRPGFYSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS77</accession>
    <name>A0A392NS77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone-lysine N-methyltransferase ATXR2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023707</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049839">
        <property type="protein sequence ID" value="MCI02673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NS77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11209" checksum="D8B7CA90B2CACBB5" modified="2018-12-05" version="1">MGHGQSFPKGPLAVRQLHVGYEKIIFWRGPNYIPLDTADIWVQVHQLPFGFMNEQIGLSIDSHIGGSVKYDDINNFSPWRKYMRLRVAINTQEPLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSA5</accession>
    <name>A0A392NSA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0023761</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050003">
        <property type="protein sequence ID" value="MCI02727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="193"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="44"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI02727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="24265" checksum="3802ECCB2462D04A" modified="2018-12-05" version="1" fragment="single">MKGRIHRTETTLSLIWTNRSSHHQRKVVPQNNTTRDQTEQYQPTTQQLHSTSQTLHHTTLTANNARNHWKYNQSTAGTDTGEPKHLHHLACRSKQKPLEKRSNPQTTSKATGTTDGDGTPEQPKSNSNRNKLCLKQQQTTLNQARTQRSGQVKPIVAGAPKPIDLETEEKTKKTMAGQKRCGAEWRSRRTTVYGGYIMPVGILDMGGGGWWWWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVQ4</accession>
    <name>A0A392NVQ4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">glutamate synthase (ferredoxin)</fullName>
            <ecNumber evidence="17">1.4.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">A2U01_0024574</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="16">Amino-acid biosynthesis; L-glutamate biosynthesis via GLT pathway; L-glutamate from 2-oxoglutarate and L-glutamine (ferredoxin route): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Energy metabolism; nitrogen metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Nitrogen metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.7.1" evidence="17"/>
    <dbReference type="EMBL" id="LXQA010052486">
        <property type="protein sequence ID" value="MCI03534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016041">
        <property type="term" value="F:glutamate synthase (ferredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016040">
        <property type="term" value="F:glutamate synthase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019676">
        <property type="term" value="P:ammonia assimilation cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050711">
        <property type="entry name" value="ET-N_metabolism_enzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006982">
        <property type="entry name" value="Glu_synth_centr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11938">
        <property type="entry name" value="FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11938:SF133">
        <property type="entry name" value="GLUTAMATE SYNTHASE (NADH)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00310">
        <property type="entry name" value="GATase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04898">
        <property type="entry name" value="Glu_syn_central"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-0288">FMN</keyword>
    <keyword evidence="14" id="KW-0314">Glutamate biosynthesis</keyword>
    <keyword evidence="10" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="12" id="KW-0408">Iron</keyword>
    <keyword evidence="13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="18">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamate synthase central-N" evidence="19">
        <location>
            <begin position="134"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00037928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00039085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF00310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF04898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCI03534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="22941" checksum="444C6B5329F22FF7" modified="2018-12-05" version="1" fragment="single">TDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVCRKGRLNPGMMLLVDFEKQIVVNDDALKEQYSLARPYGDWLKNQKIELKDVVASVHESDIVPPTISGVAPLSNDDADMENMGIHGLLAPLKAFGYSVESLEMLLLPMAKDGVEALGSMGNDTPLAVMSSREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMQCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWV6</accession>
    <name>A0A392NWV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Anthranilate phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025345</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054908">
        <property type="protein sequence ID" value="MCI04298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9850" checksum="CE697B52CFA03A0A" modified="2018-12-05" version="1" fragment="single">LLDSATVEQFGIPEFDVRNPTLSSSYRKSTLTKPNQTVLEAQTRVCTGPTQSRPLDEQQAFKVFDTILRSGFVTVEDVKAMLGLMERN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXT5</accession>
    <name>A0A392NXT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein JADE-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055927">
        <property type="protein sequence ID" value="MCI04603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17547" checksum="1E21573B89E5BE67" modified="2018-12-05" version="1" fragment="single">MTGERCYRRKNTTEEGSAAVIEEMPSPADIPAVIPAALEIDYFSQARKALSERCPFDVAEETSTSATVTLPSGLASLLNRNGDNRKRHKKSHSGGGDKKKKKSSRASEKLRSFNVWVETEEYFRDLNLSDIDTLLEAYSSYSLASRECFTIPQFGNAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8F6</accession>
    <name>A0A392P8F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0029424</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068729">
        <property type="protein sequence ID" value="MCI08348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="19287" checksum="F6DBBE7F4A537DCF" modified="2018-12-05" version="1" fragment="single">IFGCIAYAHVPDAYRKKLDNKSIKCVHLGISDESKAYRLYNPVDKKIVISRDVVFDESKSWDWDNKEKKVNAGNDILIEENEEDTPVNNNNANDTTASETEDMEVGYDSTDVEDEPTDEEHLSNNEEEEELGQRPKRLPVQMKIHTPVMRPAKIKFGKMQWIVKFKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDT4</accession>
    <name>A0A392PDT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Interactor of constitutive active ROPs 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0031366</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ICR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075571">
        <property type="protein sequence ID" value="MCI10273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029688">
        <property type="entry name" value="ICR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34224:SF4">
        <property type="entry name" value="INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34224">
        <property type="entry name" value="INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="147"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="12"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="79"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="147"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI10273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="21215" checksum="08940C0DE1BA3537" modified="2018-12-05" version="1">MNKESHLQDDDVAELKARLYDRETKLQNVTEENNTLKMEIKKEELEKNKITDEAVASAEAARAAKQEALTKLGYINKEADESNRKIARVTEELDAAQALNSELEAELRRLKVQSDQWRKAAEAAAAMISSGNNGKIVERTGFIESGYNNSIAGNKMSSPYSEDTDDDSPKKKNTTMLKKIGVLWKKNHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE57</accession>
    <name>A0A392PE57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Zinc finger protein MAGPIE-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0030848</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073770">
        <property type="protein sequence ID" value="MCI09759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000554">
        <property type="entry name" value="protein indeterminate-domain 12-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055186">
        <property type="entry name" value="C2H2-2nd_BIRD-IDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031140">
        <property type="entry name" value="IDD1-16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10593">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE RIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10593:SF188">
        <property type="entry name" value="ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22996">
        <property type="entry name" value="C2H2-2nd_BIRD-IDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12874">
        <property type="entry name" value="zf-met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 8" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C2H2-type" evidence="10">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI09759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13031" checksum="D9BB3CAE80F6BA0D" modified="2018-12-05" version="1" fragment="single">MPPLSPTPTPPPPKKKRSLPGMPDPNAEVIALSPKTLLTTNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRASEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG73</accession>
    <name>A0A392PG73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol 345-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031409</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075761">
        <property type="protein sequence ID" value="MCI10316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="18436" checksum="BA7613FDE68D5CD5" modified="2018-12-05" version="1" fragment="single">RKLPSPGFQVEVVLVDHNGNVVASKPEITKKSDESSSTTPAPVEASNSAPNADKESGDGDQDKDDVFSDGEAEHPASSRSKQTKAPSEAVETVASATKESEANKISNQITNITHATEQVSLGSKISTPSQSTGEPKSDVGGRTVSSLDGPSSESEFKAMAADASVFTFGDDEDYESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHV0</accession>
    <name>A0A392PHV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">E3 ubiquitin-protein ligase Hakai-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0031983</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078025">
        <property type="protein sequence ID" value="MCI10886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030155">
        <property type="term" value="P:regulation of cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040383">
        <property type="entry name" value="HAKAI/CBLL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13480:SF0">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE HAKAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13480">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C2H2-type" evidence="3">
        <location>
            <begin position="18"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="45"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="59"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="91"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="103"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI10886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13584" checksum="861361EE900D3FA2" modified="2018-12-05" version="1" fragment="single">CDERIQKIQTVKVMEGILVCAAPHCLKTFFKRAEFESHIHEYHADLIPSNPDKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQPHDLEERTRRQPVRDQTPSRPTMQQKPPFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQX3</accession>
    <name>A0A392PQX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SNF1-related protein kinase regulatory subunit beta-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0035021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090095">
        <property type="protein sequence ID" value="MCI13899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6747" checksum="5E250F0518601F15" modified="2018-12-05" version="1" fragment="single">LTEEKTEQFPTAFDPTGREPHAPDSRPPVRAFSFDSMANSPPQSPRRSISPILFGPQVLIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSD9</accession>
    <name>A0A392PSD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0034956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089818">
        <property type="protein sequence ID" value="MCI13835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSD9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="14155" checksum="49B7AFCD935D5A59" modified="2018-12-05" version="1">MRITMVVENFSKKKSGKLHQEDFGFIGINAQAYTLQIVVKCWNDNSASAVTKWSKYYLVMSNDRRSESNVRKYETMCDTVRESIDQGCNDTVKRMTVSSRIRVRSTESVEDVVSKLAFRPTNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4C6</accession>
    <name>A0A392Q4C6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">PGG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0039927</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111741">
        <property type="protein sequence ID" value="MCI18772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017353219" description="PGG domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="91" mass="10057" checksum="3F5E22312D7F103B" modified="2018-12-05" version="1" fragment="single">VTLIIILFFISNLSPRAMAEENKVIVEQLSTIERLVKLSILFTTVTAFLFSILLIALPPPPTEIATQNGALCYSWQYPLADLLSQCSCTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URR3</accession>
    <name>A0A392URR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010957144">
        <property type="protein sequence ID" value="MCI78718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6663" checksum="1C68749315A1016C" modified="2018-12-05" version="1" fragment="single">MKRENTEAIVNSTISTAVETVHSHENASSFCFLHRRNSLPLLWLCRLASVSEESCISQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USI4</accession>
    <name>A0A392USI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon Ty3-G gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963279">
        <property type="protein sequence ID" value="MCI78978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7610" checksum="9B7930F5AA1B1005" modified="2018-12-05" version="1" fragment="single">EPSPVIPETPTDAQLSFHAMSGFAAQNTFRVLGTFAKKQVTILADSGSTHTFIQDRVAKFVLPLHLIASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UU25</accession>
    <name>A0A392UU25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Frigida-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952000">
        <property type="protein sequence ID" value="MCI78499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UU25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5257" checksum="DB34CC1B93CDEF30" modified="2018-12-05" version="1" fragment="single">MQEKIEKCMEDFVVKEGQLYLMEDLIGELKQELNTKEIELIQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUQ6</accession>
    <name>A0A392UUQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010962460">
        <property type="protein sequence ID" value="MCI78943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2038" checksum="759D7A572857AE84" modified="2018-12-05" version="1" fragment="single">MSATPNPNPTPNAEEDKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUW2</accession>
    <name>A0A392UUW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010956091">
        <property type="protein sequence ID" value="MCI78671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6530" checksum="A979E3C2A2A1EDE3" modified="2018-12-05" version="1" fragment="single">PPRRSPHGSDEEDYRCPISKEIMRAPIPAGFERPPPLETYDGKSDPDEHIDNSNAILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0L4</accession>
    <name>A0A392V0L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0101892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999777">
        <property type="protein sequence ID" value="MCI80621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8340" checksum="D3802FB1877CCF8B" modified="2018-12-05" version="1" fragment="single">QRKENPRPEHREASAVEEEKPATGGQEPKLVAMSIWRPEDFYVPEDISAELSALSRWENFPQAMVISGGGFNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXU0</accession>
    <name>A0A392LXU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000360">
        <property type="protein sequence ID" value="MCH79781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10525" checksum="D23988A934590EFD" modified="2018-12-05" version="1">MFSIGVVGLIQRPWNDGVYRFAWEKIHGVASIGCSPFAIVPTLVGLGEICQVYCGHEFLLLAGFDFRFSVSSPFAKGSLVGDSVLADILALSLDFAVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYR6</accession>
    <name>A0A392LYR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000714">
        <property type="protein sequence ID" value="MCH80127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10146" checksum="4E3DC4280E7B3867" modified="2018-12-05" version="1">MRVISPVVSGSGLPSHSPRGTAEIKAGVDDGLCSPESQLKYLYRREKTTEAKGYDVVSYDADVDPAGDDNADAEEVVDISLDVLLMRLLFMLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZL5</accession>
    <name>A0A392LZL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000941</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000764">
        <property type="protein sequence ID" value="MCH80178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="24310" checksum="0CCB82DE6AC94CC2" modified="2018-12-05" version="1">MEPPPNTGGKIQTVFTMLFNGISSYFYIKVNPKELEYANGVLILWMACALLLLVVSLEESTKQFFQIIGETEKRFGNLFQEHVNDAQVAINIESALFNVWVAIGGLLFNWIFNRFPGHLLADNEAADGIDADPPPPPPPPDANNNEIAAAQVNFWVNPWAIRVPLFHWFPRPGFNLWADNIKALMFNWFPGLNLWANNEANVDADGTIMVYPPHDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZP8</accession>
    <name>A0A392LZP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000363">
        <property type="protein sequence ID" value="MCH79784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="255" mass="27624" checksum="56062E29D28F4E99" modified="2018-12-05" version="1" fragment="single">AMDNKFSQVSKNCSGVSSARGIHPWVSPYISMPCLSDASSSVVDFMSFSFLLIELSSSIPKGQHNVDDFNVVVGVDEVVAIVQTDKLMEFSRNKIYRRDIPRICLLCDGGVDVVSPSIYRRSSTPGRMVCRFQLLDLVESGEAWHRYFPRTAGSENFIDGLLRSVGINGQHSWTNGLPFPALCGSGTLTGRASAPPDVAFSCRLAWRVLGVALALAAPSRWVLAIISESEGMNPQSPMILSGPEIGMHGKTVSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZQ1</accession>
    <name>A0A392LZQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000805">
        <property type="protein sequence ID" value="MCH80218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14621" checksum="A2B26C63A114CA63" modified="2018-12-05" version="1">MGVDDIEEIRTVLEMEAAECKGDAAAQHKNYEQSLSLHMEEAPWCRFEDIEVGFCVGDFLSNSLYLVWFIGLQRIMPRKLPQSGIRNFLKTKEGVHKGGGPIVGYGGLTKCGRFAWTVQNMPRGRGGKKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZV8</accession>
    <name>A0A392LZV8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retroviral polymerase SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001303</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001165">
        <property type="protein sequence ID" value="MCH80533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="10"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9837" checksum="C253DA39DD08FFA4" modified="2018-12-05" version="1">MEWLKTIVHHFRGMSDESKAYKLYGPVNKKIIVSRDVVFEESKGWNCNDKPQQQKAVETTNNDDDXPVNKKIIVSRDVVFEESKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0F8</accession>
    <name>A0A392M0F8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">1-aminocyclopropane-1-carboxylate oxidase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001498</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001410">
        <property type="protein sequence ID" value="MCH80725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209:SF859">
        <property type="entry name" value="OS03G0690500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209">
        <property type="entry name" value="OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Non-haem dioxygenase N-terminal" evidence="4">
        <location>
            <begin position="69"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="181" mass="20821" checksum="B6B1ECE22B715CE4" modified="2018-12-05" version="1" fragment="single">MEISKNNEISVTTKHDHYDRASELKXFDETKDGVKGLVDASVTKIPRMFHHNFDKDSSSTSSSSTKLVVPSIDLVDIHQDPTRRKVVVEQIREASEKWGFFQIVNHGIEVSVLDEMKNGAIRFFDQDSEVKRELYSREPFRPFVYTSNFDLYNSPAANWRDTFYCIMAPKSPKPEDLPSVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M221</accession>
    <name>A0A392M221_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001311">
        <property type="protein sequence ID" value="MCH80654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M221"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="43"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="238" mass="27005" checksum="BB72572E50FCFE5F" modified="2018-12-05" version="1">MSIPLLKCLAGREALTVLQEVHEGIAGQHLGGRALTKKVLRAGYYWPSMGQDAKDFVKKCEKCQLKYLIVDVDYCTKWVEAEALAKITAANVIKFFKRNILAGFGVPQSVVTDNGSQFIDRKIQQMMENFKIKQQFSSVEHPQTNGQAKAANRVILRGLKRRLDDAKGNWAEELHHILWAYRTTPHSSTGETPFRLTYGTEAVILVELEELSWRTAYPLQEEDNSQAIHEDQDILDET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M229</accession>
    <name>A0A392M229_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002159">
        <property type="protein sequence ID" value="MCH81326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M229"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15186" checksum="775B3EA6A37341FD" modified="2018-12-05" version="1">MEFPVGKGVLFKEVGLNMIFQGNQLTDGATKLRRSEMIISTMSVQLVELMIEDGWCGSFDSEGKVTCKNVSTPTLMVYLSYEGSNYDIGSPALMMRMRTFNAIQVAMVVAIPTVLNVLEQGWFSNILPREFDDNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2D2</accession>
    <name>A0A392M2D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein NYNRIN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002288">
        <property type="protein sequence ID" value="MCH81426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="23305" checksum="04A3407FC3480106" modified="2018-12-05" version="1" fragment="single">QVEVSNRQLKQILEKTVSTSRKDWSIKLNDALWAYRTAFKTHLGLSPYQLVYGKACHLPVELEHKAYWAVKFLNFDAGLAGEKRLLKLNELEEWRLQAYENAVIYKARTKKYHDKVLVSKEFHKGQQVLLFNSRLQLFPGKLRSRWSGPFVVKEVFPHGAVEIFTPGEEEKSFKVNGQRLKIYKGGEFNRHKVALLFTDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2L6</accession>
    <name>A0A392M2L6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002431">
        <property type="protein sequence ID" value="MCH81550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2L6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="199"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="216" mass="25207" checksum="C14EA590403B3A6B" modified="2018-12-05" version="1">MQDLLYRAQNYINYEEKMLGEKSEKAKITPKKDERAREERGRRIPRGGYTEYTPLNTSREKILQDCLNTEYADAGIRPPRETRENSRTDTSKFCRYHKSAGHDTEDCIQLKDAIEDLIKLGKLSRYTKEDNHRGYEKRKYDPPRRNPRRSESPKRKRSPKRESPPKKRVKMNEDKGEDINEEGRDICKKPFVAAITGGLTKSLSSPTTNKQKGKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M345</accession>
    <name>A0A392M345_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mediator of RNA polymerase II transcription subunit 15A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002736">
        <property type="protein sequence ID" value="MCH81762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M345"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044661">
        <property type="entry name" value="MED15a/b/c-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33137">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33137:SF4">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="294" mass="30210" checksum="D5F8381B35C6D3CC" modified="2018-12-05" version="1" fragment="single">MPGDFEKPISGASSISNAANVGHQQTVGAAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPSSGKSTVTEEPMDRLIKAVSSLTPAALSAAVSDISSVISMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRCTNATPLNVVSSAGSVNDSIKQLTALEASDLESTATSNIKKPKIEANHTLLEEIREVNQRLIDTVVSISDEEVNPTAAAAAAEGAEGTIVKCSYIAVALSPSLKALYASAQMSPIQPLRLLVPTNYPNCSPIFLDKFPVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M365</accession>
    <name>A0A392M365_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Brefeldin A-inhibited guanine nucleotide-exchange protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002450</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002599">
        <property type="protein sequence ID" value="MCH81659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M365"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015403">
        <property type="entry name" value="Mon2/Sec7/BIG1-like_HDS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032817">
        <property type="entry name" value="Mon2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663">
        <property type="entry name" value="GUANYL-NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663:SF375">
        <property type="entry name" value="LD29171P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16206">
        <property type="entry name" value="Mon2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09324">
        <property type="entry name" value="Sec7-like_HDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mon2/Sec7/BIG1-like HDS" evidence="2">
        <location>
            <begin position="10"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="Mon2 C-terminal" evidence="3">
        <location>
            <begin position="113"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="423" mass="48188" checksum="02A1A640E0FA5A55" modified="2018-12-05" version="1" fragment="single">MDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNQEISLNAIGFLSFCATKLADGDLGSSSRNKDKEVSGKISSPSPQEGKYGNQDKGEVTDKDDHLNFWFPLLSGLSELSFDPRPEVRKSALDVLFETLRNHGHLFSLPLWERIFESVLFPIFDYVRHAIDPSGSSPQVNEVETNGELDQSWLYETCTVALQLVVDLFVNFYNTVNPLLRKVLMLLVSFIKRLHQSLAGIGIAAFVRLMSNAGELFSEDKWLEVVLSIKEAANETLPKFSFLESEDFVTRNEEHASTVNDDRDRVESGSPDDLESLSARRLYVCLTNAKGRAAVQLLLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5F9</accession>
    <name>A0A392M5F9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0003297</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010003756">
        <property type="protein sequence ID" value="MCH82489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45637">
        <property type="entry name" value="FLIPPASE KINASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="10" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017404087" description="non-specific serine/threonine protein kinase" evidence="10">
        <location>
            <begin position="22"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="1"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH82489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18916" checksum="FDBB48AF82BEE050" modified="2018-12-05" version="1" fragment="single">FYVAEVLLALEFLHMLGIIYGDLKPENMLVREEGHIMFSDFDLSLSLPAFSQHVQCSQSASKLHNFCRASYPENPRNWKERKFRQKNDTHQQVTPLPELIAEPTSARSLSIVGTHEYLAPEIIKGERTWQCCGLVWTSGICLYELLFGRTPFKGIQRFSEPSNPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M603</accession>
    <name>A0A392M603_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003669</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004287">
        <property type="protein sequence ID" value="MCH82857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M603"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="90"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20878" checksum="0159CBF39A1CF8F1" modified="2018-12-05" version="1" fragment="single">ARNFNENEVVNPSNDTNSSDMDLGDDSDETEQVTSPRPRRPPGYLRDYVTGSETPDDDDQLQNLAIAMFSTSKDPTTYEEAAKSKAWRNAMEWDTIRTILCLAAYESWPVYQLDVKSAFLHGDLMEDVYVMQPLGYQQGSNDQVYKLKKALYGLKQAPRACNNKKILIVSIYVDDLIYTGNDDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M633</accession>
    <name>A0A392M633_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Rho GTPase-activating protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0003510</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004047">
        <property type="protein sequence ID" value="MCH82699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M633"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00132">
        <property type="entry name" value="CRIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00159">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.810.10">
        <property type="entry name" value="CRIB domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.555.10">
        <property type="entry name" value="Rho GTPase activation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000095">
        <property type="entry name" value="CRIB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036936">
        <property type="entry name" value="CRIB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008936">
        <property type="entry name" value="Rho_GTPase_activation_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000198">
        <property type="entry name" value="RhoGAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044785">
        <property type="entry name" value="RopGAP1-5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23177">
        <property type="entry name" value="MKIAA1688 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23177:SF73">
        <property type="entry name" value="PAK-BOX_P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00786">
        <property type="entry name" value="PBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00620">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00285">
        <property type="entry name" value="PBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00324">
        <property type="entry name" value="RhoGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48350">
        <property type="entry name" value="GTPase activation domain, GAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50108">
        <property type="entry name" value="CRIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50238">
        <property type="entry name" value="RHOGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0343">GTPase activation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRIB" evidence="3">
        <location>
            <begin position="82"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Rho-GAP" evidence="4">
        <location>
            <begin position="127"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH82699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="27722" checksum="14504E29E1E2F267" modified="2018-12-05" version="1" fragment="single">MAEVLHSCDPIQQSPSSSSSSSFSSLAVAVNSSFSMVTDCEAEEMTVKEREKTAQELSLLAILMTLFRKSFISCSTDVAMEIGHPTNVRHVAHVTFDRFNGFLGLPLEFVPQVPTTPPSASATVFGVSTESMKLSYDTRGNIVPTILLLMQEHLYAQGGLQAEGIFRINADNRQEEYVRDQLNKGVVPQNIDVHCLAGLIKAWFRELPRGVLDSLSPDQIMQCQTEEDCAELSNQLPHTEASLLDWTINLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7K1</accession>
    <name>A0A392M7K1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Large ribosomal subunit protein uL22c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">50S ribosomal protein L22, chloroplastic</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0004273</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="2">This protein binds specifically to 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Plastid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005212">
        <property type="protein sequence ID" value="MCH83452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009536">
        <property type="term" value="C:plastid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.470.10:FF:000004">
        <property type="entry name" value="50S ribosomal protein L22, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="entry name" value="Ribosomal protein L22/L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_uL22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_uL22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_uL22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047867">
        <property type="entry name" value="Ribosomal_uL22_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018260">
        <property type="entry name" value="Ribosomal_uL22_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_uL22_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501:SF10">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL22M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="Ribosomal protein L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00464">
        <property type="entry name" value="RIBOSOMAL_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0934">Plastid</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 13" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="9 13 14" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0699">rRNA-binding</keyword>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00035285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00035416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH83452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22459" checksum="D3F2B1AEC6F35B40" modified="2018-12-05" version="1" fragment="single">EQPNEIKTEGSKQEHGALWRSTGLAQRCSKEVVGLEQEEYRGFGICKLRATTVWSLQNLCINSAKISYKGFNFVQESNKSYAEAYAVGRHIRMSADKARRVIDQIRGRPYEETLMILELMPYRACEAIIKIVFSAGANASNNLGLSKSSLVISKAEVNEGKTLKRVRARAQGRANQILKRTCHITITVKGLPSESVVEANPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7X2</accession>
    <name>A0A392M7X2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Acyl-CoA-sterol O-acyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0004138</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the wax synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004978">
        <property type="protein sequence ID" value="MCH83319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7X2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008374">
        <property type="term" value="F:O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044851">
        <property type="entry name" value="Wax_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032805">
        <property type="entry name" value="Wax_synthase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31595">
        <property type="entry name" value="LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31595:SF38">
        <property type="entry name" value="MBOAT (MEMBRANE BOUND O-ACYL TRANSFERASE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13813">
        <property type="entry name" value="MBOAT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="Wax synthase" evidence="10">
        <location>
            <begin position="7"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH83319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13378" checksum="70928398165520A5" modified="2018-12-05" version="1">MLKAFSLVIGRKWAPIPAVLVTFMVSGLMHELMFYYMKHNTTWKTWELCWDSICFFVIHGVCVALQIAYKKIFKPKHDILPRVVSCTLTMAFVITTGIWLYIPALVRCGVSFTQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9N8</accession>
    <name>A0A392M9N8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006430">
        <property type="protein sequence ID" value="MCH84200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9N8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3245" checksum="F1C4E1398ED6DDE7" modified="2018-12-05" version="1" fragment="single">MQALGEVVYIHDNCGSKGLFWLAAILQGPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA94</accession>
    <name>A0A392MA94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004554</name>
        <name evidence="3" type="ORF">A2U01_0011159</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005654">
        <property type="protein sequence ID" value="MCH83728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010017914">
        <property type="protein sequence ID" value="MCH90246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="197"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="394" mass="45841" checksum="0085F0C27072D330" modified="2018-12-05" version="1" fragment="single">KKISWIKWDIVCLPKKKGGLDVRDVRVVNISLLAKWHWQLLFDDEAVWKEVLKSKYGTRVVGRPELGEECKPWFASLWWKDICSIGCNLNHNWFSQCVIKILGNGMCTSFWWDTWAGEISLKDRFPRLFSISTQKDSSVAELRCPNSGLQVWSFVWRRGLFEWEQASLNELMESINMVSFSDADDRWGRRPEKGAAFTVKSTYRNVYSLSAPAFEVEPWHASIFNAIWKSPAPSKVSGFVWQLLHSRVPTRNNLVTRRILDVGGDSSYALCGEEMETELHLFLYCEIALLVWMEIFSWLDVPFCLPHNLFSIFNCLLGAGDYKIRYGMIMICNSVVWTLWRCRNSILFDNGRGTVADLVEAIKVSTWKWWMSRATTSHCLLYEWCVEPRLCLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAE9</accession>
    <name>A0A392MAE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ras-related protein RABB1c-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004906</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006222">
        <property type="protein sequence ID" value="MCH84075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001447">
        <property type="entry name" value="Ras-related protein Rab-1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050209">
        <property type="entry name" value="Rab_GTPases_membrane_traffic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47979">
        <property type="entry name" value="DRAB11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12048" checksum="F43021737887CF79" modified="2018-12-05" version="1" fragment="single">AGQESFRSITRSYYRGAAGALLVYDITSINIADREFTNRRETFNHLASWLEDARQHANANMTIMLIGNKSDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAZ5</accession>
    <name>A0A392MAZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006624">
        <property type="protein sequence ID" value="MCH84313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="381"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="495" mass="55601" checksum="D43B3CD4E895FAAE" modified="2018-12-05" version="1" fragment="single">DKNGKRFGFARFEDVGDSQQLLEKLEDTWLGSYKIRANSPKFARGEAPKDNAANGGRVIQNERKVIPDAKLQVASYKQVITGANTTTEIQKARQKFVPNTKQKRRLTEEEYRAGIQEIQPDPELLTNLQNCYVGTLWETVEAEILQVSMWMEGYQQIKVTTLGMDLVLLSSTVIGQIQEGFQKNKRWWERWFSKIQPWRPDILPKGRRIWVRLFGVPLHIWNWEGFEKIIWRFGKLQNLDPETLNQTRFDVARAHIQISSWEMVDEVIEIKVNEEIFIIRMVEERFGSIDLGLNKTAASAKVGGGSDDGSAPNRAHGGSVLGVDEGWSEANSDGASVECDEDRCSEDLVVIDQVHKTSDREAGGQLEREIQSSMVTVTGETNVKGSEKAEEEGEKVGTEDTEHVVPATQLSQSPAAREETYSADLGVRLQNEDLFQKVPDIPSLMGEVEGGPGGVDLVTCNDVPKEGQIRDCVKGKGVVEKEREKTKEEVQQRDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB36</accession>
    <name>A0A392MB36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcription factor bHLH48-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006631">
        <property type="protein sequence ID" value="MCH84319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024097">
        <property type="entry name" value="bHLH_ZIP_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12565">
        <property type="entry name" value="STEROL REGULATORY ELEMENT-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12565:SF112">
        <property type="entry name" value="TRANSCRIPTION FACTOR BHLH48-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13604" checksum="78845060619F208A" modified="2018-12-05" version="1" fragment="single">ISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLASDGSSLMDSNLPSMVTPLVWPEIPLNNNRPHYQQQWQFDAFHQPLWGREEDNHHFMTPENSLLSYDSPANSGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB92</accession>
    <name>A0A392MB92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative leucine-rich repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007365">
        <property type="protein sequence ID" value="MCH84780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="20986" checksum="DDD53A3E227182CF" modified="2018-12-05" version="1">MMSDGQCSGHFKEPLQMSLTLDPGQSRATEVYMPESMSQNIHSNAGGRYLIPSQDPFIPRQDPFIPRQDPFIPRPDSLAAAVNVTDWAANTAYMATPSQSHLNTGSSYDSIRNPDQFLAPRTFGVDAGTIRMNPAAALPPQASNPLDYFTGREAAPSGLVPDDMTWVNLQHPNSALHDPMGKPYLRSSWNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC04</accession>
    <name>A0A392MC04_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005873</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007798">
        <property type="protein sequence ID" value="MCH85032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="45"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="126"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="278"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="293"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="309"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="369" mass="42298" checksum="1175C6C280D41472" modified="2018-12-05" version="1" fragment="single">MGEEDDHGWNNVRGRRRDRRGNHPYRIDIATARNFDKANNNSYLTTYFFTDFPESYGAKALFNAFHNYGDIMEVVIPAKRDKGGRRFGFARFDRVPEPRNLETELDNIVFGRSKISVNLSRYQRPEGYKRGEDGSLERKGRREQSRPRSXTARRKRVVLSFEAEKNDLMRLKKAFTGIAVQPGMTYNIQDAFHSQGYFGVKVTPLGRFVRGIQRMWIRTELHADEATNKKLTMDVARLLIRTSCQRVVDEFIDVQISGDIFHIRVIEDSYGPMRLMLPQQQGLEGRANGRESSEDEEEEEEEERRLMVVEEELERESEGEGGPANSTNSHQSVKGGAIRRQSKSEVVGCNHKSTRLVDSDCGGLGRLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDC1</accession>
    <name>A0A392MDC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008230">
        <property type="protein sequence ID" value="MCH85291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000442">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein At3g49710"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000725">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein At3g63370, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000073">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:001181">
        <property type="entry name" value="PPR containing plant-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF433">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="53"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="84"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="115"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="216"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="287"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="349"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="425"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="456"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="498" mass="55958" checksum="E7F88FC8B6DBB8D2" modified="2018-12-05" version="1" fragment="single">MSKHGLVRKLVGDLPFLDSSPFEKLLDSCIRSKSVFEARRVHAQIIKTQFTSDIFIQNRLIDVYGKCGCLDDARKVFDHMPQRNTFSWNAVLSALTKSGALDEALNLFKCMPEPDQCSWNAMVSGFAKRERFQEALRFFVDMHCEDFVFNEYSFGSALSACAGLIDVNTGVQIHGLISKSRYSFDVYTSSALVDMYSKCGVVDSAQRAFDDMEVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVVSACASLSAIREGLQIHARVMKWDKFRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKALSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLSACANLADLKLGRQAHANILKHGFWFQSGEQSDIFVGNSLIDMYMKCGLVEDGRVVFEHMVERDDVSWNAMIIGYAQNGYGTEALEIFRKMLVAGGRPDHVTMIGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDD4</accession>
    <name>A0A392MDD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome-associated kinesin KIF4A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006326</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008592">
        <property type="protein sequence ID" value="MCH85480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005875">
        <property type="term" value="C:microtubule associated complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007052">
        <property type="term" value="P:mitotic spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051231">
        <property type="term" value="P:spindle elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969:SF27">
        <property type="entry name" value="CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47969">
        <property type="entry name" value="CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="11"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="216"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="182"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="18"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="28183" checksum="0D3CD7A8CCAEE6C5" modified="2018-12-05" version="1" fragment="single">MATKKLKELLEARKSSNRDTSVTMNGSGANKQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALAEELAMLRQVNELAANGLSPPKGKNGFARAFSMSLNARMARIASLENMLSISSNSLVAMASQLSEAEERERAFTNRGHWNQLRSMGEAKILLQYMFNSLADTRCQMWEKDMEIREMKDQIRELVGLLRQSEIKRKEVEKELKVREQDVATTLAKPASGNSPNSLKHCAEDIQEPLSPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDI7</accession>
    <name>A0A392MDI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008788">
        <property type="protein sequence ID" value="MCH85587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd09917">
        <property type="entry name" value="F-box_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050628">
        <property type="entry name" value="SNF2_RAD54_helicase_TF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626:SF14">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE (EUROFUNG)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45626">
        <property type="entry name" value="TRANSCRIPTION TERMINATION FACTOR 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="4">
        <location>
            <begin position="82"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="213" mass="23715" checksum="7DA79E1572762B7C" modified="2018-12-05" version="1" fragment="single">MLSDPDYCRKTHGENESIWNLSDCHVLGCKLHSXIRGASRERLFELHEIFKTVPSPCGEQQKFIISKIIPMDHTCRSGIWEISDDILTKILSSLGPLDLLRVSVTCHHLRSLAASVIPCTKLKLFPHQQTAVEWMLHRERNANLLPHPLYIALSTYDGFSFHVNTVSGDIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLITKTQGTLADPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDK0</accession>
    <name>A0A392MDK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005971</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007951">
        <property type="protein sequence ID" value="MCH85129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4846" checksum="4CDFB636C64543AD" modified="2018-12-05" version="1" fragment="single">VIHESSKDNCGEALEFYYAAPFLISHPRQPRTMPDELVNLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDX3</accession>
    <name>A0A392MDX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulator of G-protein signaling 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005817</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007712">
        <property type="protein sequence ID" value="MCH84978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.167.10">
        <property type="entry name" value="Regulator of G-protein Signalling 4, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016137">
        <property type="entry name" value="RGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036305">
        <property type="entry name" value="RGS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044926">
        <property type="entry name" value="RGS_subdomain_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10845:SF192">
        <property type="entry name" value="DOUBLE HIT, ISOFORM B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10845">
        <property type="entry name" value="REGULATOR OF G PROTEIN SIGNALING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00615">
        <property type="entry name" value="RGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00315">
        <property type="entry name" value="RGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48097">
        <property type="entry name" value="Regulator of G-protein signaling, RGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50132">
        <property type="entry name" value="RGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="RGS" evidence="2">
        <location>
            <begin position="89"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="29785" checksum="F8C86D5751A61DEF" modified="2018-12-05" version="1" fragment="single">VWITAYILNEIHDNIRWLEVVSRFLLLVLASILVLAFFSISSSQPLLSQISLRRRESREFRTMGQALGIPDSGVLTQSEQNSRIDPNEPLDKLLLNKKFRQSFMAFADSCLAGESVHFFDEVHELSKISENDCVRRIYMARHIIEKYIAAGAAMEINISYRSKQEILSTTDLARADLFHNALNEIVQLMKTNLAKDYWSSMFFLKFQEECDMRCNGYELEQMTGWNYSPRLSSVHGTDDPFHQDHLLKNSECDNDTDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME28</accession>
    <name>A0A392ME28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Tousled-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0006377</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008684">
        <property type="protein sequence ID" value="MCH85531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035556">
        <property type="term" value="P:intracellular signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22974">
        <property type="entry name" value="MIXED LINEAGE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22974:SF23">
        <property type="entry name" value="TOUSLED-LIKE KINASE, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22739" checksum="457FC16A31C4FB36" modified="2018-12-05" version="1" fragment="single">MKHVTRECRIHKSLVHGHIVCLWEVFGIDQNTACTVQEYCIGKDLDAVLKXXXXXXXSEARVILVQIFQALVYLNRRTQKIIHYDLKPGNVLFNELGVAKVTDFGLSKIVENDVGSEGMELTSQGAGTYWYLPPECFDFSKTPLISSKVDVWSAGILFYQMLFGKRPFGHGQTQESILREETIIGAHMVEFPPVPTVSDKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME98</accession>
    <name>A0A392ME98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006281</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008510">
        <property type="protein sequence ID" value="MCH85435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="31"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="392" mass="45090" checksum="7C66A9264E569420" modified="2018-12-05" version="1" fragment="single">MGVGVPQGIDLSIHLGSSSSPGDDLEESRVRGRIKKKKIKEFISSNHLDFIAIQESKLELMSDYLCHFLWGNSFCDWSFTPAIANSGGILSIWCGSRGKALCSFSGSGFVGVCLDWGVSKIRCFMVNVYSKCSLAEKKAMWSRLLHLRDYLGGDNWCVVGDFNSVLSTSERRGYLGISLGERFTWFQPNGGAMSRLDRFPMSDGWWDLWGEPSQWALPRDVSDHCPIILRYSSQLWGPKPFRFNNFWLDHRGLRDFVTRVWCRPSTHGWMAYRLKEKLKALKGDLKIWNHEVFGNLDYSIELVTEVIKDLDLKAERGPLSREEIDDRSKGFTELWRLLKCRDSQMFQRSRSRWLKEGDANTGFYHASVKRRGRRNSILALRVGDRWLESVSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF68</accession>
    <name>A0A392MF68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009787">
        <property type="protein sequence ID" value="MCH86132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3673" checksum="8683828517C658F6" modified="2018-12-05" version="1">MIGEATGSVADSTQSKDETSLDAASPYGAAPDSRSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGX2</accession>
    <name>A0A392MGX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006852</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009548">
        <property type="protein sequence ID" value="MCH85998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF515">
        <property type="entry name" value="GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="61"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="214"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="562"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="562" mass="64774" checksum="86E407041579375D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHD3</accession>
    <name>A0A392MHD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dynamin-related protein 1E-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006493</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008886">
        <property type="protein sequence ID" value="MCH85644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1240">
        <property type="entry name" value="Dynamin, middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022812">
        <property type="entry name" value="Dynamin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000375">
        <property type="entry name" value="Dynamin_stalk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003130">
        <property type="entry name" value="GED"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11566">
        <property type="entry name" value="DYNAMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11566:SF227">
        <property type="entry name" value="DYNAMIN 1E-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01031">
        <property type="entry name" value="Dynamin_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02212">
        <property type="entry name" value="GED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00302">
        <property type="entry name" value="GED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dynamin GTPase effector" evidence="2">
        <location>
            <begin position="193"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="296" mass="33454" checksum="12498EF84358EE07" modified="2018-12-05" version="1" fragment="single">RSGGDRIYNVFDNQLPAALRKLPIDKHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGTLSFFRGPAEASVDAVHFVLKELVRKSIGETEELRRFPTFQAELAAASNEALERFRDESKKTTIRLVDMESSYLTVDFFRKLPQEMERAGNPAQPTKSAQPTNPAQPTKSAQPTYPAQPTDPSNRAGSNEDRYGDGHFRRIGSNVLSYIGMVSETLRITIPKAVVYCQVREAKQSLLNYFYTQIGKKEVLSXXXXXXXIFSSISMHFNFAYLQPPTFFGNESIENNRIKYAPAFCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHQ2</accession>
    <name>A0A392MHQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011363">
        <property type="protein sequence ID" value="MCH87017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="156"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="21924" checksum="FAE934571C0BF58D" modified="2018-12-05" version="1">MAEDDAKKKGKMIGSTTDDHQKDDSGDDVSVNQGDGAKSPSKKQKEGLSSGSKMKEDDAKKKEKMIGSSTDDHLQKDGSDDSSTMXXXXXXXXXXXXXXXXXTTTTTSAETPSKIRKEERWTGPSKATTARTVKHFHKTNLKVPKKETKSGEESSDNAVGAAAAGNRNSNSSDSDASSIMLIEGQRCSSPTSGLLPKPPPETDGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIE7</accession>
    <name>A0A392MIE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007806</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011236">
        <property type="protein sequence ID" value="MCH86943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="3">
        <location>
            <begin position="115"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="259"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="383"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="506" mass="57247" checksum="E1EAF2533E8CBE5F" modified="2018-12-05" version="1">MAGEHGNNDNSSVNTLQAAVVEIRRLQTQIAAIEAERTHEKEKAKMISEEEEGENIMDVQPLAQHLWDTQITEAIKVLHLPTFDGKTDPREHLMAIGTQTAIINAPEHLKCKLLAGTFKDVALRWYMNLPRNSIESYADFHKKFVHQFAGSKHVKVTSTSLFSIRQNHGESLRSFLARFSEATIKVSNPNQEMFVAAFHNGLRAGHFNESLAQKPASSMQEVNKRAECYIKGEESNAEKRQRDAKEKEYVGRATRALEHPRPKTGSHQGNTWQRHHGKPYHQPPRREFRNHPAEEEFTPLNTSKVYVLNEILASGLANLPPKRANNIPMGLNDNAWCAYHRCRGHSTEKCFRLRDLIEELIKSGHLRRFIDDVAQGRVVVPKIPRQEPHDTQGPSKEPPKERISVNTIAGGFSGGGESSSARKRYVRRAISEIYLVRQPQPLDVPDLAFTARDGLEVAPHDDDPLVIQVQILNCDVKRVLIDLGSSADIMYWEAFKAMQLAEEQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIH6</accession>
    <name>A0A392MIH6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">A2U01_0007745</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">cv. 10/8</strain>
            <tissue evidence="22">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="20">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010011126">
        <property type="protein sequence ID" value="MCH86885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000237">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000059">
        <property type="entry name" value="S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051343">
        <property type="entry name" value="G-type_lectin_kinases/EP1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976:SF27">
        <property type="entry name" value="RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000654">
        <property type="entry name" value="Integrin-linked_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 19 20" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="16" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10 22" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 22" id="KW-0430">Lectin</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 19 20" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15 22" id="KW-0675">Receptor</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 20 22" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="21">
        <location>
            <begin position="45"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="MCH86885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="329" mass="37794" checksum="04F3BEC73C147B5B" modified="2018-12-05" version="1">MSIHYMYKIRVLKYKRLTETGNFGGLDEDLALRRFTYNELRRATNHFKEELGKGAFGKVYKGALXKGKRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGKLLFGDQRRPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVVRGTRGYMAPEWNKNVPISLKADVYSYGIMLLEILCCRRNLDVNVLEPEEILLSGWAYKCFVAGEVNKLVPWEVIDKNVMENMVKVALWSIQDDPFFRPTMKGVMLMLEGVTDIAIPPCPVSNSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIM8</accession>
    <name>A0A392MIM8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Hexosyltransferase</fullName>
            <ecNumber evidence="5">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0007782</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1 5">Glycan metabolism; pectin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Golgi apparatus membrane</location>
            <topology evidence="5">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glycosyltransferase 8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010011191">
        <property type="protein sequence ID" value="MCH86919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIM8"/>
    <dbReference type="UniPathway" id="UPA00845"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047262">
        <property type="term" value="F:polygalacturonate 4-alpha-galacturonosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045489">
        <property type="term" value="P:pectin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029993">
        <property type="entry name" value="GAUT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002495">
        <property type="entry name" value="Glyco_trans_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32116:SF63">
        <property type="entry name" value="GALACTURONOSYLTRANSFERASE 12-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32116">
        <property type="entry name" value="GALACTURONOSYLTRANSFERASE 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01501">
        <property type="entry name" value="Glyco_transf_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH86919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="358" mass="41346" checksum="0D12B86875F37302" modified="2018-12-05" version="1" fragment="single">VPEEIYRILDQHYDKDELKGKSDIPETLKEFMTEMNKGGYDAKTFAIKLREMVTFMERTTRMAQIQKYKYRHVALNSIPRQLHCLDLRLANEHANNAAARLWLPSDELIPALVDNSYFHFVLATDNVLAASVVAKSLVYHSLQPQKVVLHIITDRMTYYPMQAWFSLHPLSPAIIEVMALQNFDRFTKKEAHVLEAMEKDQTVRSRYRGGSSAIIANTYEKPNVIAAKLKVLIPKYISVTNHIRIHLPELFPSLDKVVFFDDDIVVQTDLSALWDIDMNGKVNGAVETCKGEDKLVMSKTLESYLNFSHPLISKNFDPNECAWAYGMNIFDLEAWRKTNISNTYLYWVEQVYLSFILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJV2</accession>
    <name>A0A392MJV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Strictosidine synthase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012057">
        <property type="protein sequence ID" value="MCH87365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10426:SF69">
        <property type="entry name" value="PROTEIN STRICTOSIDINE SYNTHASE-LIKE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10426">
        <property type="entry name" value="STRICTOSIDINE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6442" checksum="90B841B7BA8F5F36" modified="2018-12-05" version="1" fragment="single">MLVPFALNETLPGRSECVRPFAPELEHICGRPLGLKFDKKNGDLYIADAYLGLKVVGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK36</accession>
    <name>A0A392MK36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chromodomain-helicase-DNA-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008743</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013062">
        <property type="protein sequence ID" value="MCH87862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034728">
        <property type="term" value="P:nucleosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056302">
        <property type="entry name" value="CHD1-2/Hrp3_HTH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45623:SF14">
        <property type="entry name" value="CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45623">
        <property type="entry name" value="CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23588">
        <property type="entry name" value="HTH_CHD1_Hrp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-dependent helicase CHD1-2/hrp3 HTH" evidence="3">
        <location>
            <begin position="88"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20102" checksum="4089C57E05864384" modified="2018-12-05" version="1" fragment="single">VMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDLKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQVCPLHEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKZ7</accession>
    <name>A0A392MKZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013386">
        <property type="protein sequence ID" value="MCH88041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006527">
        <property type="entry name" value="F-box-assoc_dom_typ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017451">
        <property type="entry name" value="F-box-assoc_interact_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01640">
        <property type="entry name" value="F_box_assoc_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07734">
        <property type="entry name" value="FBA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box associated beta-propeller type 1" evidence="1">
        <location>
            <begin position="69"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="336" mass="38536" checksum="12A1601F200AE3F1" modified="2018-12-05" version="1">MISKYHPYCDGTSLLLNHFDSTDGEWKLHSLSGERFENKVRLNMPHPFNRSYGMYDGPHILGSAINGTLCVYSQRNESTIVLWNPATEQVHHVPLNRSRLFYEYENSYTIHGFGYDHIRDDYKIILRIDYIGGLEDYDQGVPSGPFWDIYSLRKKSWKKLYADMRKCYMSSAGSAVYLNGVCHWWGKQWGEQSVRETYVVSFNLHTEVPVMTLLPSDLHDLEGADRHLTVLNGFVAMISSYQKTTSAFHISIAILVEPGVNESWIKLFDLGPXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLTTGVMKSLDVKAEIWRAQVVIYKKNILPIKGMDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML41</accession>
    <name>A0A392ML41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">WD-40 repeat-containing protein MSI4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009093</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013725">
        <property type="protein sequence ID" value="MCH88210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050459">
        <property type="entry name" value="WD_repeat_RBAP46/RBAP48/MSI1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22850">
        <property type="entry name" value="WD40 REPEAT FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="19"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10274" checksum="5E68BD7CCA8E8308" modified="2018-12-05" version="1" fragment="single">MFDRRKLNSRGVGSPVYKFEGHDAPVLCVQWCPNKSSVFGSGAEDGIINIWDHDKVGRILGSTDPTVPATSPGLFFRHAGHSVSDDCASTGGGGTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM70</accession>
    <name>A0A392MM70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UNC93-like protein C922.05c</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009187</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013904">
        <property type="protein sequence ID" value="MCH88303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7500" checksum="F1EC4DFFC3AFD8F0" modified="2018-12-05" version="1" fragment="single">AAVAWQIDNHNVSPMSQLIVNWVLTTVSYPLLLVLMVLAVKEDNSKEEKAEFHVENISPPGHNGSVDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMA9</accession>
    <name>A0A392MMA9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional factor B3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009108</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013750">
        <property type="protein sequence ID" value="MCH88225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13238" checksum="11AB65B2C8D5F9CE" modified="2018-12-05" version="1">METNGMATPPIFMWQQTIKKYEGDGHGVIEFPDHVVEQCLLKEHKLITLIDEQNSKSYECEIETVNGGSNKKYVAKGWFKYLEEVGLNDGEKVLFNVDNPPKNMYVYRLDFIFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN75</accession>
    <name>A0A392MN75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mediator of RNA polymerase II transcription subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015192">
        <property type="protein sequence ID" value="MCH88966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15000" checksum="20F18B545B60E9FB" modified="2018-12-05" version="1" fragment="single">KNPGFSAFFGLLRHDRNPCGGLHGQPCEICHATSFLGSPVEIRPPISTMVLPGPTFDNTGVTFPSDFSHEFPYILFDSENETTIPEPKAAKETIDLKEIKRVDHILASLQRKNTVNSCYHFLPCITSSFPVVAALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNV7</accession>
    <name>A0A392MNV7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glycine-rich protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009796</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MLF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015078">
        <property type="protein sequence ID" value="MCH88903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019376">
        <property type="entry name" value="Myeloid_leukemia_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13105">
        <property type="entry name" value="MYELOID LEUKEMIA FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="101"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="135"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="245"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="256" mass="28255" checksum="3AA5D39D05D04156" modified="2018-12-05" version="1" fragment="single">MQGRGGPGGGRDPFSDFGAPFGGFGGHGSFGPGLMSSFFGGRDPFDDPFFNRPFGGMFQSSMFGGLSPFPPEMQRSGILDGPSGFPFPRQMQQSGFPFAPDMQPSEFPFNPNMHPSGFLEHSEPSSRRGPIIQELDSDDENEDATEEKIDNPKKHRRSSIEPSVEHPDDEFEGKKIRHLLGRNEYNRFNAQQPQPQTRSFSFQSSTVSYGGPNGTYYTSSKTRRTGSDGVTLEESKEADSSTRQASHRISRGLHDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPM8</accession>
    <name>A0A392MPM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BAG family molecular chaperone regulator 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009107</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013747">
        <property type="protein sequence ID" value="MCH88224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050821">
        <property type="term" value="P:protein stabilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.120">
        <property type="entry name" value="BAG domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039773">
        <property type="entry name" value="BAG_chaperone_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036533">
        <property type="entry name" value="BAG_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003103">
        <property type="entry name" value="BAG_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12329:SF46">
        <property type="entry name" value="BCL-2-ASSOCIATED ATHANOGENE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12329">
        <property type="entry name" value="BCL2-ASSOCIATED ATHANOGENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02179">
        <property type="entry name" value="BAG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63491">
        <property type="entry name" value="BAG domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017476273" evidence="2">
        <location>
            <begin position="20"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="BAG" evidence="3">
        <location>
            <begin position="14"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8955" checksum="DCA7F8F34B691CCD" modified="2018-12-05" version="1" fragment="single">NWEMIMLIIGIFQVATLEAAINAGNKTPEKEFLVWTELLMSQLLKLDGIVAEGEAKLQRKAEISEIKSLIKLSIILTDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ73</accession>
    <name>A0A392MQ73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ammonium transporter 3 member 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0010129</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015748">
        <property type="protein sequence ID" value="MCH89235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="entry name" value="Ammonium transporter AmtB like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="AMMONIUM TRANSPORTER MEP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029:SF10">
        <property type="entry name" value="AMMONIUM TRANSPORTER MEP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111352">
        <property type="entry name" value="Ammonium transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="91"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium transporter AmtB-like" evidence="9">
        <location>
            <begin position="2"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="unsure residue" description="I or L" evidence="10">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH89235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="17729" checksum="A9FC326E46E0277A" modified="2018-12-05" version="1" fragment="single">LVQGWAAIIMGVLSGSVPWYTMMVLGKKFAIFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPTLSTLFLPVTNSKGGVYGGSGGVQILKQIVGALFIIGWNIVATSIICLVVGLIVPLRMTEEELXIGDDAVHGEEAYALWGDGEKLSLYKDDTTSHGVLASSGATQIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQN1</accession>
    <name>A0A392MQN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Calcium uptake protein 1 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010483</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016459">
        <property type="protein sequence ID" value="MCH89583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990246">
        <property type="term" value="C:uniplex complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036444">
        <property type="term" value="P:calcium import into the mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051560">
        <property type="term" value="P:mitochondrial calcium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039800">
        <property type="entry name" value="MICU1/2/3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12294:SF23">
        <property type="entry name" value="CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12294">
        <property type="entry name" value="EF HAND DOMAIN FAMILY A1,A2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH89583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8835" checksum="C65BC4B5C36E0B59" modified="2018-12-05" version="1">MIPADLMRAVVPVFPPSESHLVRDGYLRGERNPGHLRCSPSEFFMLFDVNSDGLISFKDEYYLFVAKDILVLVWEMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQS0</accession>
    <name>A0A392MQS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative carboxylesterase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010749</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017036">
        <property type="protein sequence ID" value="MCH89847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050466">
        <property type="entry name" value="Carboxylest/Gibb_receptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23024:SF562">
        <property type="entry name" value="2-HYDROXYISOFLAVANONE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23024">
        <property type="entry name" value="ARYLACETAMIDE DEACETYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="2">
        <location>
            <begin position="3"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7823" checksum="06EB0993FDF6FC30" modified="2018-12-05" version="1" fragment="single">ISQFHGGGFFFESAFSKLYHEHFNVFVSQANSIVVSVEYRLAPEHPLPACYNDCWNPSLQWVASNQEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQY9</accession>
    <name>A0A392MQY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative serine/threonine kinase plant-type protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010882</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017336">
        <property type="protein sequence ID" value="MCH89976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051582">
        <property type="entry name" value="LRR_extensin-like_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32093">
        <property type="entry name" value="LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32093:SF131">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING N-TERMINAL PLANT-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="413" mass="46003" checksum="1B01B63FFED6F90C" modified="2018-12-05" version="1" fragment="single">SPAPSPEPNCPPPQPPPNPPPSPKPRPPAPRPRPLTFRIDRARRVLIQFATTVKPNSITTNWINSTKDTCQFNRILCGTYPTDGQRAVAGLDLNQGRLSGKTCDNIPLTGLLDKLEELTFFHVNSNSFSDKIPTQILNFPYFYELDLSNNKFVGEFPEVVIKATNLVFLDLRFNNLEGPVPSDLFKKDLDVIFINNNKFTGSLPANFGSTPARYLTFARNQLTGEIPRSIGDASKTLTEVLFLGNKFEGCLPFEIGYLKKATVFDVSLNSLTGPIPASFGCLEKIQFLNLAHNKFYGTVPESVCVLPGIKNNGNLSLSDNYFTAIDPACWYLLKSKILDVSNNCIPGLPNQRSKKDCYDFQCKVKPCSNHQSLSYVPCKTRWGAKQDTAPVSQEMATEPVTYKSLKPHHRLRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS22</accession>
    <name>A0A392MS22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Paired amphipathic helix SIN3-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011281</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018157">
        <property type="protein sequence ID" value="MCH90366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="21966" checksum="C4DB1FD41219D5AF" modified="2018-12-05" version="1" fragment="single">GTSTNGAIAGGTEVSRDLEESNRQFKSEREEGELSPNGEFEGEEARRENYADADDEGEESPQRSSEDSENASENVDVSGSESADGEEGSQEEHEDGEHDDKAESEGEAEGMADAHDIEGDGTPLPFSERFLLNVKPLAKHVPPVFHVKDRNSPVFYGNDSFYVLIRLHQDKGVLNGDLNWMVIRWNGRLVIWLEAIMVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT35</accession>
    <name>A0A392MT35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Wall-associated receptor kinase-like 20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0011638</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018909">
        <property type="protein sequence ID" value="MCH90716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007166">
        <property type="term" value="P:cell surface receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000446">
        <property type="entry name" value="Wall-associated receptor kinase-like 20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045274">
        <property type="entry name" value="WAK-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27005:SF190">
        <property type="entry name" value="OS05G0318100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27005">
        <property type="entry name" value="WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 9" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="64"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047951"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH90716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="23765" checksum="50753E6162F12DF0" modified="2018-12-05" version="1" fragment="single">TTCGVGAALILATVAFLLYKRHKRILXXXXXXAKEREGILNASGGGKAAKLFSGKEIKKATNDFSADRLLGVGGYGEVYKGILSDGTNVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLLDHLTGQMPKGRASLNWNNRLHIARDTSEGLSYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTJ6</accession>
    <name>A0A392MTJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017338">
        <property type="protein sequence ID" value="MCH89978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16801" checksum="3ECA4D445DE76B0B" modified="2018-12-05" version="1">MNVATNCPWRNNTDETVEHVLFLCDKSKQTWQLVNLWQKIALLQQYHGSIAKKIFHVMAXMDKEENVCLQLQFGVYGGXLGMLGCGRTHLREPWILCITVKVCLRNEEWRVARSGAGSNSQNQLRSITIQKWTRSQEGGDCKCAIKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTV2</accession>
    <name>A0A392MTV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin and WLM domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010604</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016702">
        <property type="protein sequence ID" value="MCH89704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013536">
        <property type="entry name" value="WLM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47796:SF1">
        <property type="entry name" value="OS08G0500800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47796">
        <property type="entry name" value="ZINC METALLOPROTEINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08325">
        <property type="entry name" value="WLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51397">
        <property type="entry name" value="WLM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WLM" evidence="2">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="29774" checksum="4D99E022EE15E012" modified="2018-12-05" version="1" fragment="single">HRWRVGIMTEMAPIGYVGVSPKCILGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMIHSEHDANFYALDKQLNQEAASLDWTKSAGHTLSGVRSSEIFEDDFIEDSSNIPQKLGGSRSDQLMSARESSIIAAYHRMATVSTNKSGGSEVNQEPDHDYSNADSDTREQPDYMESSSEEIKYIDTPINNDEGLNEPDPDDHIKNGMKHEPDPDDSYHEPLHSQTSTMNMDATYPDANDSETSLKSIAPAIGKRSPKNSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU16</accession>
    <name>A0A392MU16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-glucosidase 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011684</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018995">
        <property type="protein sequence ID" value="MCH90762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353:SF240">
        <property type="entry name" value="BETA-GLUCOSIDASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="GLYCOSYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00131">
        <property type="entry name" value="GLHYDRLASE1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="16639" checksum="02D6358F51614E95" modified="2018-12-05" version="1">MTVEHDGKPLGPMAASSWLCIYPRGFRQLLLYVKNHYNNPVIYITENGRDEFNDPTLSLQESLLDTDRIDYYYRHLYYLETAIRDGVNVKGYFAWSLLDNMEWESGFSLRFGLVFVDYKNDLKRHPKLSAHWFKNFLKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUL5</accession>
    <name>A0A392MUL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Ribonuclease H superfamily polynucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0012162</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019995">
        <property type="protein sequence ID" value="MCH91236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06127">
        <property type="entry name" value="DEDDh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000040">
        <property type="entry name" value="Exonuclease family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Ribonucl_H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30231">
        <property type="entry name" value="DNA POLYMERASE III SUBUNIT EPSILON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30231:SF4">
        <property type="entry name" value="PROTEIN NEN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Exonuclease" evidence="7">
        <location>
            <begin position="12"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH91236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="18849" checksum="471463C485A54351" modified="2018-12-05" version="1">MDSLPLSDDRSEIVFFDVETTVPTRTGQGFAILEFGAILVCPRKLTELRNYTTLVRPADLSLISPLSEQCNGINVEAVSNAPTFADIAPTVYDLLHGRIWAGHNILRFDCVRIRDAFAAINQSPPEPKGTIDSLVLLTQKFGRRAGNMKRSGATAIAVTFTCIKVHSVTANTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUU9</accession>
    <name>A0A392MUU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019100">
        <property type="protein sequence ID" value="MCH90805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4850" checksum="A5B378C3528B793C" modified="2018-12-05" version="1">MLAKRADAAPSERVRQISLELALCRFDTTFEGSDPQVDLVAAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW80</accession>
    <name>A0A392MW80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019411">
        <property type="protein sequence ID" value="MCH90958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="108"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15519" checksum="6EC2C789A4F83C7C" modified="2018-12-05" version="1" fragment="single">MNLLLIPGVRLEHGGSKGTPSKMPRSIRANSCPPGEPSWSETEEGGQQDPKRRKASGLLRHSLYSLKKVVRLPSKDRSEVLKVLKKKVRQRRGGKSVSRSSNVSLQASSEESTSSGSINNDWKHWVVMQGNDQMVVGDIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY85</accession>
    <name>A0A392MY85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">K(+) efflux antiporter 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0012820</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021385">
        <property type="protein sequence ID" value="MCH91889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015386">
        <property type="term" value="F:potassium:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46157:SF2">
        <property type="entry name" value="K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46157">
        <property type="entry name" value="K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Cation/H+ exchanger transmembrane" evidence="6">
        <location>
            <begin position="33"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH91889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14216" checksum="0DC3B714FA8366E4" modified="2018-12-05" version="1" fragment="single">MFSLHGLIGSLVQNGFQSQFLSPYQTYPWIGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAAVVGLVAHYICGLPGPAAIVIGNGLALSSTAVVLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYE3</accession>
    <name>A0A392MYE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidylinositol 4-kinase beta 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022898">
        <property type="protein sequence ID" value="MCH92540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="80"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="233"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="326" mass="37734" checksum="66920C684B943EBC" modified="2018-12-05" version="1" fragment="single">MCSKSLKIALKVHWFLMAELEDSDDNDGISRIQEKCQMAATLMGEWPPLIRPHTEPPSPGGKSQVLNRLLSSKNRLLSLTTSPPKSLSFSSSPGNNLQDDGNPLSPDENRIFKKFMPSPKVRDALLFRKSADKDDGDSEKDGFFKRLLRDSKGDDELGQKIRDAFHFRKSSEKDALDSEKENFFKRFLRDSKDSTRGDDEDSEKDGFFQRILRDSRSEDEDVTSSSEGFFKKLFRDSKNDPEDRTNTKTVEDEEKNGLFRKFFREKFEDRKDGRDRNDNRNVANSEENCPKPDEEDEKDGFFRKFFKDKFEDKKDTKDKIEEGTAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N077</accession>
    <name>A0A392N077_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein MEI2-like 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023067">
        <property type="protein sequence ID" value="MCH92615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N077"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12531">
        <property type="entry name" value="RRM3_MEI2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034454">
        <property type="entry name" value="MEI2-like_RRM3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007201">
        <property type="entry name" value="Mei2-like_Rrm_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23189">
        <property type="entry name" value="RNA RECOGNITION MOTIF-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04059">
        <property type="entry name" value="RRM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Mei2-like C-terminal RNA recognition motif" evidence="2">
        <location>
            <begin position="116"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="254" mass="28374" checksum="1F2731BFA24235E9" modified="2018-12-05" version="1" fragment="single">KSSETSLMNNVGYSGMSLGHNDGNYLLNAAISGNASVSIPRNMADNGSSNFRMRSSPILSPVFLGNGPYPGVLPTAMESLSDRVRSRWIDNNGSQVDSKKLFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFFETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQVTLYITSDQKTLSVLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0M9</accession>
    <name>A0A392N0M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Exostosin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0013448</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyltransferase 47 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022847">
        <property type="protein sequence ID" value="MCH92508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0M9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004263">
        <property type="entry name" value="Exostosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040911">
        <property type="entry name" value="Exostosin_GT47"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062">
        <property type="entry name" value="EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062:SF48">
        <property type="entry name" value="OJ1485_B09.5 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03016">
        <property type="entry name" value="Exostosin_GT47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Exostosin GT47" evidence="6">
        <location>
            <begin position="13"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH92508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="14031" checksum="46555814FF997105" modified="2018-12-05" version="1" fragment="single">WVTILNGEDPYSCRVDLMELLKKSKYWERSKGRDHIFPMTHPNAFRFLRNQVNDTIQVVVDFGRYPKGMSNLNKDVVSPYVHVVDSFTDDESQDPYETRSTLLFFRGRTYRKDVCLADC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N227</accession>
    <name>A0A392N227_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024508">
        <property type="protein sequence ID" value="MCH93249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N227"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4710" checksum="F6D69C4CF5FA2612" modified="2018-12-05" version="1" fragment="single">DSWSLVDLYRVSVNCFFLGSCSVSLVRGCGCFGPTTLLVVPIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N304</accession>
    <name>A0A392N304_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L-type lectin-domain containing receptor kinase IX.1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0014467</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025130">
        <property type="protein sequence ID" value="MCH93515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N304"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052059">
        <property type="entry name" value="CR_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47973">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH93515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12904" checksum="1E3DB2B93ADF2079" modified="2018-12-05" version="1">MYSFGIVALELATGRRIFQDGEFHVPLMNWVWGLYVEGNLMSAVDERLNLEFDVNEMKSLLIVGLWCTHSNDKERPKAYEVIKVLNHEMALPELPLDMHDHAPPINSDEFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N563</accession>
    <name>A0A392N563_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0015850</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010028404">
        <property type="protein sequence ID" value="MCH94881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N563"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051348">
        <property type="entry name" value="U-box_ubiquitin_ligases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647">
        <property type="entry name" value="OS02G0152300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647:SF43">
        <property type="entry name" value="OS10G0100500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="260" mass="29906" checksum="C3A286D7A2FAD596" modified="2018-12-05" version="1" fragment="single">VKLFESAHAHESELRKEVEVALRDTVLEQQKLLEESEHISGELQMTMRNVALLDSRAKETARRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAEELPELAEFSLSDIENATSWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRTRMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLGTEESLYSPSSSFHLSTEPKGAFTYTDPEFQRTGVLTTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5J5</accession>
    <name>A0A392N5J5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transportin-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015389</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027312">
        <property type="protein sequence ID" value="MCH94429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5J5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051345">
        <property type="entry name" value="Importin_beta-like_NTR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057941">
        <property type="entry name" value="TPR_TNPO3_IPO13_2nd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12363:SF33">
        <property type="entry name" value="IMPORTIN-13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12363">
        <property type="entry name" value="TRANSPORTIN 3 AND IMPORTIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24138">
        <property type="entry name" value="TPR_TNPO3_IPO13_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13431" checksum="B2B5225C48AB6DCB" modified="2018-12-05" version="1" fragment="single">DEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQLNLTRRESYISYGNEACIEAERNRRLQVFRPAYESLVSLVSLPGWRLEVGIKIIPSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6B8</accession>
    <name>A0A392N6B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027991">
        <property type="protein sequence ID" value="MCH94719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5903" checksum="2506417DBC5CDE28" modified="2018-12-05" version="1" fragment="single">MHRDTWQDPNDVDVMYASTYAIDEKXPRGGDDGGEVKDGGDKMNFAIEEGDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6G0</accession>
    <name>A0A392N6G0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MADS-box domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0015700</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028025">
        <property type="protein sequence ID" value="MCH94735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002100">
        <property type="entry name" value="TF_MADSbox"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036879">
        <property type="entry name" value="TF_MADSbox_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55455">
        <property type="entry name" value="SRF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50066">
        <property type="entry name" value="MADS_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="MADS-box" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH94735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2508" checksum="9F4B5D469F39FAC0" modified="2018-12-05" version="1" fragment="single">MARGKVQLKRIENPVHRQVTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6J9</accession>
    <name>A0A392N6J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016882</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028179">
        <property type="protein sequence ID" value="MCH94799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010031016">
        <property type="protein sequence ID" value="MCH95900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044650">
        <property type="entry name" value="SRFR1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44749">
        <property type="entry name" value="SUPPRESSOR OF RPS4-RLD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44749:SF1">
        <property type="entry name" value="TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11192" checksum="EDFBF57D3AB7DCC9" modified="2018-12-05" version="1">MTYYWYNFMPLSRGTAAAGFVVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKDYHDVASTFATTGSVVAALSSYDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6Q2</accession>
    <name>A0A392N6Q2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029916">
        <property type="protein sequence ID" value="MCH95476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="168"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="363" mass="41320" checksum="1644DFC5B90543EC" modified="2018-12-05" version="1" fragment="single">MTQVIQTPEQQFYLAKLLGYSYEILYKPGAQNRVADALSRTHCMVLTIPHWDFVDKLKGQFASDSELQALVQKITNDPGNHKEFQIHDGLVFLKGKLFIPSSSAMKQVLLEEFHSSLLGGHSGIARTYGRLRENVIWHGMKKDVITFVQNCHTCQSVKTPTHSPYGLLQPLPIPERVWEDISLDFITGLPSFQSFTVILVVVDRLSKAAHFGMLPTDFTAVKVAHLFAQMICKLHGMPKSIVSXRDPIFLSKFWQELFRLSGTKLRMSTAYHPQSDGQTEIVNKTLQQYLRSFVHDKPKQWGKFLHWAEYHYNTAIHSATGFSPFQIVYGREPPSLPVYITGSTHIQALEEELLDRDDILALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N720</accession>
    <name>A0A392N720_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Vignain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0016566</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030179">
        <property type="protein sequence ID" value="MCH95586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N720"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02248">
        <property type="entry name" value="Peptidase_C1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.70.10:FF:000332">
        <property type="entry name" value="Cathepsin L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025661">
        <property type="entry name" value="Pept_asp_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025660">
        <property type="entry name" value="Pept_his_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013128">
        <property type="entry name" value="Peptidase_C1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039417">
        <property type="entry name" value="Peptidase_C1A_papain-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12411">
        <property type="entry name" value="CYSTEINE PROTEASE FAMILY C1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00705">
        <property type="entry name" value="PAPAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00645">
        <property type="entry name" value="Pept_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00640">
        <property type="entry name" value="THIOL_PROTEASE_ASN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00639">
        <property type="entry name" value="THIOL_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <feature type="domain" description="Peptidase C1A papain C-terminal" evidence="6">
        <location>
            <begin position="21"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH95586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="24343" checksum="DDC582C45AF12BF5" modified="2018-12-05" version="1" fragment="single">AWASARAVDPPMCPCIYRVKCPCKSPCFIVAHRAQVSCWAFSTVVAVEGINQIKTNRLVPLSEQELIDCDTKENQGCNGGLMEYAFEYIKQKGGLTTESYYPYEANDGSCDATKENVPAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGNCGKELDHGVAIVGYGTTVDGTNYWIVRNSWGAEWGEQGYIRMQRNVSEKEGLCGIAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9S8</accession>
    <name>A0A392N9S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Potassium efflux antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0016867</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030970">
        <property type="protein sequence ID" value="MCH95885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015386">
        <property type="term" value="F:potassium:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045158">
        <property type="entry name" value="KEA4/5/6-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16254">
        <property type="entry name" value="POTASSIUM/PROTON ANTIPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16254:SF14">
        <property type="entry name" value="TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0050">Antiport</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation/H+ exchanger transmembrane" evidence="9">
        <location>
            <begin position="4"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH95885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9564" checksum="E7864B0E7E905AA9" modified="2018-12-05" version="1">MLTLITFLVVLSILSRTCVPWFLKLMISLSSQTNELYQLASVAFCLIVAWCSDKLGLSLELGSFAAGVMISTTDLGQHTLEQVTHFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB09</accession>
    <name>A0A392NB09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033903">
        <property type="protein sequence ID" value="MCH97027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="92"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14004" checksum="8B61EDC813D69DF5" modified="2018-12-05" version="1" fragment="single">SVRSVQEQPQSLRTXSSVRSSFSGNAAEQTPPRIATNVSQGEQQPPSARSTTANRTFDMSPSARSLANSRPAQSSNVNNDQPPSARANSGRPGLSKVVPLVPSSVPITLRPTSSVSIPPSESLTDLNKKDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBI2</accession>
    <name>A0A392NBI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018209</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034378">
        <property type="protein sequence ID" value="MCH97216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="33"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="114"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="301" mass="34896" checksum="6F936F0C54BDCBB8" modified="2018-12-05" version="1" fragment="single">MREKEEREGELGHERGKSKHGSSYAHRMDQISISFFVTNFPDELGWGDLWKLFAKFGSVSDVFIPKKVDKWGRRFGFVKFKEVRDVEDLSWKLEDVWSGNFKLRVNRARFRKGDNKEVSSTSKEEPQRTREGSDLRVKEDVSFKSLLVRDNSGGVEVMKPVSGERRKVRFNSMGDLVPLELRVCESSLKALKNSKVGLFKQTMDFQTFHERLVGEGNHDVKATYMGGNMVLLQSPCEGELSEVMRCNKTWWDHCFLKVMPWKPTLLSESREVWIQIYGIPLHAWEEGSFKLIVGRFGVFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC59</accession>
    <name>A0A392NC59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018432</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034957">
        <property type="protein sequence ID" value="MCH97437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050823">
        <property type="entry name" value="Plant_Ser_Thr_Prot_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45621">
        <property type="entry name" value="OS01G0588500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12311" checksum="1391FE1C35CF5033" modified="2018-12-05" version="1">MKPNTLNFVAEVNYLGQFSNPNLVKLFGYCCEDEHRLLVYEYMASGSLEKHLFRRTGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDAVCRLLIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCS8</accession>
    <name>A0A392NCS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Signal peptide peptidase-like 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0017971</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Endosome membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase A22B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033796">
        <property type="protein sequence ID" value="MCH96979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098554">
        <property type="term" value="C:cytoplasmic side of endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030660">
        <property type="term" value="C:Golgi-associated vesicle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098553">
        <property type="term" value="C:lumenal side of endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042500">
        <property type="term" value="F:aspartic endopeptidase activity, intramembrane cleaving"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033619">
        <property type="term" value="P:membrane protein proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.30.30:FF:000007">
        <property type="entry name" value="Signal peptide peptidase-like 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046450">
        <property type="entry name" value="PA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003137">
        <property type="entry name" value="PA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007369">
        <property type="entry name" value="Peptidase_A22B_SPP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12174:SF107">
        <property type="entry name" value="PA DOMAIN, PRESENILIN_SIGNAL PEPTIDE PEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12174">
        <property type="entry name" value="SIGNAL PEPTIDE PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02225">
        <property type="entry name" value="PA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52025">
        <property type="entry name" value="PA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0967">Endosome</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="PA" evidence="13">
        <location>
            <begin position="34"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH96979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17518" checksum="7F868A45A7A653F2" modified="2018-12-05" version="1" fragment="single">VESGEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEVILVHRGQCSFTTKANIAEEAGASAILIINNRAGLFKMVCEDNETDIDIGIPAVMLPQDAVSVQLYSPKRPQVDVAEVFLWLMAVGTILCASYWSAWTAREGAIEREKLLKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDF0</accession>
    <name>A0A392NDF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Type I inositol 145-trisphosphate 5-phosphatase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018158</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the inositol polyphosphate 5-phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034250">
        <property type="protein sequence ID" value="MCH97165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004445">
        <property type="term" value="F:inositol-polyphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034485">
        <property type="term" value="F:phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004439">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046856">
        <property type="term" value="P:phosphatidylinositol dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045849">
        <property type="entry name" value="IP5P_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000300">
        <property type="entry name" value="IPPc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45666:SF5">
        <property type="entry name" value="TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45666">
        <property type="entry name" value="TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22669">
        <property type="entry name" value="Exo_endo_phos2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Inositol polyphosphate-related phosphatase" evidence="3">
        <location>
            <begin position="6"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13781" checksum="711ED959F65FCC39" modified="2018-12-05" version="1" fragment="single">LVKELEKGVFNGWTEGKLNFPPTYKYEINSDKYIGEDPKVARRTPAWCDRILSYGNGIKLLSYKRSELKFSDHRPVTATYLAEVEVFDPRKLQKALTYTDAEIENEEIVTNFCSWNIPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDL0</accession>
    <name>A0A392NDL0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">12-oxophytodienoate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0018218</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NADH:flavin oxidoreductase/NADH oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034396">
        <property type="protein sequence ID" value="MCH97225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045247">
        <property type="entry name" value="Oye-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893">
        <property type="entry name" value="NADH OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893:SF91">
        <property type="entry name" value="NADPH DEHYDROGENASE 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0288">FMN</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH:flavin oxidoreductase/NADH oxidase N-terminal" evidence="6">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH97225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17195" checksum="40EEF31AC6A09521" modified="2018-12-05" version="1" fragment="single">YPNTPGIWTKEQVEAWKPIVDAVHAKGGTFFCQIWHVGRVSDSVYQPNGQAPVSSTDRLLTPQIGGDGTQMSQFTQPRRLTTEEIPNIVNDFRLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGSLENRCRFTLEIVEAVTNEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEX6</accession>
    <name>A0A392NEX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myelin-associated oligodendrocyte basic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019409</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037510">
        <property type="protein sequence ID" value="MCH98407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="14929" checksum="E96E1BD92FEEB552" modified="2018-12-05" version="1">MKCHLDCKSQSSLSPNSNSKSPLESLANTIWNALRKPAAAAILIGFLLMYVPNNGLAASGGAMGGSSFSSSSDSSSYSSSSSSSDCCSCSSDLSTLSALYIMIILIVGYLAAYLYIKISQITTVLKYQAMFIFHSLLHTML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF60</accession>
    <name>A0A392NF60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transposon Tf2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0018781</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035921">
        <property type="protein sequence ID" value="MCH97785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="85"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH97785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="351" mass="39558" checksum="9901DA9660B73179" modified="2018-12-05" version="1" fragment="single">MLHSTTNTTHIIPSDAHLIDSLHPDLQSVLQPYLHLFTLPQGLPPPRPHDHHIHLTPAANPVNIKPYRYPHYQKEAMTNIIVDMLKEGLIQPSTSPYSSPVLLVKKKDGSWRFCVDYRALNAITIKDRFPIPTIDELIDELHGSAVFTKIDLRSGYHQIRLAPEDIPKTGFRTLDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRKFALVFFDDILVYSPNWHDHLLHLQQVLQSLSDNQFYAKLSKCQFGVSSVEYLGHIISVEGVRADPSKLQAMVSWPVPKNITALRAFLGLTGFYRRFVLNYATIASPLTDLLKANSFVWSEAASAAFTTLKAAMANLPLLTLPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGL9</accession>
    <name>A0A392NGL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0019506</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037775">
        <property type="protein sequence ID" value="MCH98503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH98503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13578" checksum="33F50DBB935E7432" modified="2018-12-05" version="1" fragment="single">PYPLRTLIYEDPASVLRACAIPSCSPTGFLFSYATVKATFCALSFASVSTMASSQATTFWSPGTSTGSVAKVRRGKEDAEVLEISNVQAGKRPATSATKNNVKGPGCVYVKKSRSISRQRLEQGKHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIV3</accession>
    <name>A0A392NIV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nudix hydrolase 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0019396</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037478">
        <property type="protein sequence ID" value="MCH98394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052751">
        <property type="term" value="F:GDP-mannose hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055295">
        <property type="entry name" value="NUDT22/NUDT9-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31835">
        <property type="entry name" value="URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31835:SF1">
        <property type="entry name" value="URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE NUDT22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH98394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5241" checksum="36E8D1CD47825B77" modified="2018-12-05" version="1" fragment="single">DSVLCQHTSSPLGNGAVVETIDNKILVLQRSNNVGEFPGYFVFPGGHPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKT3</accession>
    <name>A0A392NKT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alpha-ketoglutarate-dependent dioxygenase alkB-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0021517</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the alkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043403">
        <property type="protein sequence ID" value="MCI00498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035516">
        <property type="term" value="F:broad specificity oxidative DNA demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051747">
        <property type="term" value="F:cytosine C-5 DNA demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006307">
        <property type="term" value="P:DNA alkylation repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.590">
        <property type="entry name" value="Alpha-ketoglutarate-dependent dioxygenase AlkB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027450">
        <property type="entry name" value="AlkB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037151">
        <property type="entry name" value="AlkB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032852">
        <property type="entry name" value="ALKBH2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31573">
        <property type="entry name" value="ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31573:SF1">
        <property type="entry name" value="DNA OXIDATIVE DEMETHYLASE ALKBH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13532">
        <property type="entry name" value="2OG-FeII_Oxy_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-ketoglutarate-dependent dioxygenase AlkB-like" evidence="3">
        <location>
            <begin position="5"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR632852-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9681" checksum="6C536875EA0DEDA7" modified="2018-12-05" version="1" fragment="single">VHKALPGSSFNSLLLNRYKGGNDYVGWHADDEKLYGPTPEIASLSLGCDRDFILKKKPSKKSRVFINISSSFGVNFQMEVMSLRASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKU8</accession>
    <name>A0A392NKU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0021028</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041981">
        <property type="protein sequence ID" value="MCI00014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="84"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13362" checksum="37F6A69A95AE0565" modified="2018-12-05" version="1">MIERSSNKVKIEIALQAQPNKDKKGKGKWNGGKCRGGHNNINNRSSQQDSSSSSRKQGNQGGYRGVGNNRGRGGRKKFDKSNIQCYNCKKYGHFADEXYGEKKEQEDNARLAKQENEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL49</accession>
    <name>A0A392NL49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0020853</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041478">
        <property type="protein sequence ID" value="MCH99838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL49"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47941">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="15"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="50"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH99838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23540" checksum="4C4BCD738AEF63E1" modified="2018-12-05" version="1" fragment="single">WQLFNEIPLRNLVVDSCAYNALITTLGRNKDVVSALSLMDEMIEKQIEPDGVTYHTLFLGLMKTRGIEGVRELYLKMIHRKFVPKTRTVVVLMKYFCQNNRLDLSLSLWNYLVEKGHCPHAHALDLLVTGLCSRGMVQEAFSCSKQTLERGRHMSSTAFLMLERFLKQSRDVDKLNELDQMIKKLQSVLPPSRGHATGISNSNVIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLY9</accession>
    <name>A0A392NLY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Abnormal spindle-like microcephaly-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0021132</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042271">
        <property type="protein sequence ID" value="MCI00116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000922">
        <property type="term" value="C:spindle pole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051295">
        <property type="term" value="P:establishment of meiotic spindle localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000278">
        <property type="term" value="P:mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007051">
        <property type="term" value="P:spindle organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051185">
        <property type="entry name" value="ASPM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22706">
        <property type="entry name" value="ASSEMBLY FACTOR FOR SPINDLE MICROTUBULES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22706:SF1">
        <property type="entry name" value="ASSEMBLY FACTOR FOR SPINDLE MICROTUBULES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ARM" evidence="5">
        <location>
            <begin position="13"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI00116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17934" checksum="2DC6F4F786FA9325" modified="2018-12-05" version="1" fragment="single">HSQRCCEELVAAGAIDTLLRLIQTISRSIPDQEVLKHVLSTLRNLARYPHLLEVLIQRHNSIQTIVLELLRNKEEGFFIASELLKKICSTHKGVDAILKSPALLKRLRSLVEELTRKTTYQKRNVRGPTPSSVVIVRENTDRRLKEATEILKLLTQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNH3</accession>
    <name>A0A392NNH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">B3 domain-containing transcription factor VRN1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0022463</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046136">
        <property type="protein sequence ID" value="MCI01438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd10017">
        <property type="entry name" value="B3_DNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044837">
        <property type="entry name" value="REM16-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31391:SF106">
        <property type="entry name" value="B3 DOMAIN-CONTAINING PROTEIN OS01G0723500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31391">
        <property type="entry name" value="B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02362">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01019">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="6">
        <location>
            <begin position="60"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI01438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="22030" checksum="FF648FBAB62834A0" modified="2018-12-05" version="1">MNIICGTVGAQEAAAENDEDGDIRYRFYESASARKRIVTAEERERAINEAKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQTSDARQWPVRCLYRGGRAKLSQGWYEFTVENNLGEGDVCVFELLRTRDVVLQVTLFRVKEDESGLFNPSMQPTQNVSHAKLLNPHLQHRVSSTKSAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUQ4</accession>
    <name>A0A392NUQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050565">
        <property type="protein sequence ID" value="MCI02909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3283" checksum="EEF2F1654F16A5EA" modified="2018-12-05" version="1" fragment="single">LQRIQGITLEVDAWRMVLKKLKEATITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVB8</accession>
    <name>A0A392NVB8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0024420</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010051991">
        <property type="protein sequence ID" value="MCI03382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000228">
        <property type="entry name" value="Serine/threonine-protein kinase BIK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050823">
        <property type="entry name" value="Plant_Ser_Thr_Prot_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45621">
        <property type="entry name" value="OS01G0588500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="36"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI03382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19236" checksum="4F6C76DF56C710C2" modified="2018-12-05" version="1" fragment="single">ASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPENLLGEGGFGKVFKGLIKEGAESEKGGGLTIAIKILNSHSSQGFAEWQSEVNFLGRLSHPNLVKLLGFGHEDHKLFLVYEFQPRGSLDNHLFGRGSNVRPLSWDKRLKAYTAKLSDFGLAKSGPSDDHSHVSTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6E9</accession>
    <name>A0A392P6E9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0028712</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066135">
        <property type="protein sequence ID" value="MCI07643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="70"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="22491" checksum="49692BBF9DB45272" modified="2018-12-05" version="1" fragment="single">EQLLVDEVIPSLVSNNVNNLLTMLPSKEEIKSAVFHLNKDGXPGPDGFGAYFYQTYWDIIQNDVXDAVVQFFISGWILPNYNSNTLILIPKSSNADSIDQYRPIALANFKFKIISKVLADRLAQIMPSIISREQRGFIQGRNIKDCICLAXXXXXXLHKKSFGGNIAMKIDISKAFDTLNWDFLLSLMAHSMVISSVQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8L5</accession>
    <name>A0A392P8L5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067699">
        <property type="protein sequence ID" value="MCI08082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8L5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7668" checksum="825917F6BF4B9F1C" modified="2018-12-05" version="1" fragment="single">KVSMQPSPEVNMQPSPNVKVEASTGVKTDLSPEVKVQSSPIMKIEPPQKSNRNIFTRSAKTMGACLCLKPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBD4</accession>
    <name>A0A392PBD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Gibberellin receptor GID1B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0030155</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071285">
        <property type="protein sequence ID" value="MCI09072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010331">
        <property type="term" value="F:gibberellin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048444">
        <property type="term" value="P:floral organ morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009939">
        <property type="term" value="P:positive regulation of gibberellic acid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010325">
        <property type="term" value="P:raffinose family oligosaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050466">
        <property type="entry name" value="Carboxylest/Gibb_receptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002168">
        <property type="entry name" value="Lipase_GDXG_HIS_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033140">
        <property type="entry name" value="Lipase_GDXG_put_SER_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23024">
        <property type="entry name" value="ARYLACETAMIDE DEACETYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23024:SF98">
        <property type="entry name" value="GIBBERELLIN RECEPTOR GID1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01173">
        <property type="entry name" value="LIPASE_GDXG_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01174">
        <property type="entry name" value="LIPASE_GDXG_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="4">
        <location>
            <begin position="17"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI09072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28586" checksum="D855D8F35EA84910" modified="2018-12-05" version="1" fragment="single">IIELEKPLSTTEIVPVIIFFHGGSFSHSSANSAIYDTFCRRLVSMCKAVVVSVNYRRSPEHRYPCAYEDGWNALNWVKSRTWLQSGKDSKVYVYMAGDSSGGNIAHHVAVRAAEEDVEVLGNILLHPLFGGEKRTESEKKLDGKYFVKLQDRDWYWRAFLPEGEDRDHHACNPFGPKGKSLKGLKFPKSLVCVAGLDLLQDWQLEYAEGLKNYDHDVKLLYLKEATIGFYFLPNNDHFYCLMNEINAFVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBS3</accession>
    <name>A0A392PBS3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pathogen-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0029815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070110">
        <property type="protein sequence ID" value="MCI08736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053218">
        <property type="entry name" value="Pathogen-related_defense"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31723">
        <property type="entry name" value="PATHOGENESIS-RELATED FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31723:SF4">
        <property type="entry name" value="PATHOGENESIS-RELATED FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8260" checksum="C9168DFBD2B74281" modified="2018-12-05" version="1" fragment="single">MPYKANEETFESSHEVFKSAFPRGFAWEVIKVYTGPPEIAFKFRHWGFFEGPFKGHAPTGNMVQFFGLGTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDD0</accession>
    <name>A0A392PDD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cation/H(+) antiporter 15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0030411</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072231">
        <property type="protein sequence ID" value="MCI09326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098662">
        <property type="term" value="P:inorganic cation transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057291">
        <property type="entry name" value="CHX17_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057290">
        <property type="entry name" value="CHX17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050794">
        <property type="entry name" value="CPA2_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468">
        <property type="entry name" value="CATION/H + ANTIPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468:SF110">
        <property type="entry name" value="CATION_H+ EXCHANGER 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23256">
        <property type="entry name" value="CHX17_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23259">
        <property type="entry name" value="CHX17_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation/H(+) antiporter central" evidence="5">
        <location>
            <begin position="32"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Cation/H(+) antiporter C-terminal" evidence="6">
        <location>
            <begin position="129"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF23259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI09326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="235" mass="25764" checksum="E1EAFC5225F4A7FC" modified="2018-12-05" version="1" fragment="single">RAGALVAAYLEKPSGQPGAQNLTKSQEELERINNSFEAFGEAYDAVRVQTLNVVSAYETIHEDVFNSANEKHTSLIILPFHKQLSSEGALKTTSIAYRDINLNVMQGAPCSVGIFVDRDIGPLPKMEFCICVIFVGGPDDREALAIAWRMAGHPGTRLSVVRMLLFDKAAEVDTSSHAEAQGILSVEXXXXKQKDLDDEYVNFFRLIGVNNNDSISYSEVDVHSVEDITTNGVIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF70</accession>
    <name>A0A392PF70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075641">
        <property type="protein sequence ID" value="MCI10287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000090">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF368">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="65"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="260" mass="28420" checksum="355AF1AFF24E1F7B" modified="2018-12-05" version="1" fragment="single">FMLCSAVTACASLGRLGSGKITHGVVIRLGHDANDVISSALVDMYAKCGCVSYSDKVFRRISNPSVVPYTSMIVGAAKYGLGTLSLRLFQEMIDRRIKPNDITFVGVLHACSHSGLIDKGLEIFNSMNEKYGVMPDARHYTCIVDTLGRVGRIDEAYQLAKSVQVGSDDDALLWGTLLSASRLHGRIDIAIEASNRVIESNQQVAAAYVTLSNTYALSGDWEKAHNLRSEMKRTGVYKEPGSSWIEIKESTYLFHAGDMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3S1</accession>
    <name>A0A392Q3S1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TOM1-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0039909</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TOM1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111669">
        <property type="protein sequence ID" value="MCI18754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3S1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035091">
        <property type="term" value="F:phosphatidylinositol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043130">
        <property type="term" value="F:ubiquitin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043328">
        <property type="term" value="P:protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03561">
        <property type="entry name" value="VHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044836">
        <property type="entry name" value="TOL_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002014">
        <property type="entry name" value="VHS_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46646">
        <property type="entry name" value="TOM1-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46646:SF1">
        <property type="entry name" value="TOM1-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00790">
        <property type="entry name" value="VHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00288">
        <property type="entry name" value="VHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48464">
        <property type="entry name" value="ENTH/VHS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50179">
        <property type="entry name" value="VHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VHS" evidence="2">
        <location>
            <begin position="55"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17413" checksum="F489CF246AC1E07C" modified="2018-12-05" version="1" fragment="single">MSENLKGKVNAIGERLKINGAEMGRKMSAGMSTMSFKMKEFFQEPNQADKLVADATSESLDYTNWDIILHLCDLINAEKIDTCDVVRAIKKRVMMKSPRGQYLALVLLEVLVKNCDKGFFEVATERVLDEMVKIVDDPDQSFVASKEKALMMIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UU50</accession>
    <name>A0A392UU50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010957974">
        <property type="protein sequence ID" value="MCI78743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="15" mass="1568" checksum="7F0B5D323C80149D" modified="2018-12-05" version="1" fragment="single">MVSEPSPRSAEPPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXA7</accession>
    <name>A0A392UXA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010959095">
        <property type="protein sequence ID" value="MCI78790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3415" checksum="2859A1916C95A1FF" modified="2018-12-05" version="1" fragment="single">AAASHGSPIFTFSELGMDDPGDFQNFMDPPASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX26</accession>
    <name>A0A392LX26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000236</name>
        <name evidence="2" type="ORF">A2U01_0000297</name>
        <name evidence="3" type="ORF">A2U01_0003495</name>
    </gene>
    <organism evidence="1 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000140">
        <property type="protein sequence ID" value="MCH79486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010000185">
        <property type="protein sequence ID" value="MCH79546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010004032">
        <property type="protein sequence ID" value="MCH82684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9824" checksum="D1916B521074F713" modified="2018-12-05" version="1">MQEAEKLHYAGGVDLITRRVVYLYEKGSLASLNYVWRVRCHAARNTWPKEVFLSDLVTRGVKRVTRGVTTKKLNYAGCVVGTRAAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXJ6</accession>
    <name>A0A392LXJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Myosin-6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0000434</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="7">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000280">
        <property type="protein sequence ID" value="MCH79680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.720:FF:000011">
        <property type="entry name" value="Myosin 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.720">
        <property type="entry name" value="Myosin VI head, motor domain, U50 subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004009">
        <property type="entry name" value="SH3_Myosin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140">
        <property type="entry name" value="MYOSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140:SF836">
        <property type="entry name" value="MYOSIN-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02736">
        <property type="entry name" value="Myosin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00193">
        <property type="entry name" value="MYOSINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51844">
        <property type="entry name" value="SH3_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="2 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="5 7" id="KW-0505">Motor protein</keyword>
    <keyword evidence="4 7" id="KW-0518">Myosin</keyword>
    <keyword evidence="1 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Myosin N-terminal SH3-like" evidence="9">
        <location>
            <begin position="14"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="Myosin motor" evidence="8">
        <location>
            <begin position="68"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="162"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH79680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="516" mass="58258" checksum="D4F2FD61142ACC56" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXL3</accession>
    <name>A0A392LXL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="21">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">A2U01_0000443</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000290">
        <property type="protein sequence ID" value="MCH79689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="17" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="20">
        <location>
            <begin position="1044"/>
            <end position="1208"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="19">
        <location>
            <begin position="1351"/>
            <end position="1398"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="18">
        <location>
            <begin position="211"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="17">
        <location>
            <begin position="1222"/>
            <end position="1256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="18">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH79689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1451" mass="165166" checksum="5012C073709DDAB7" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXV0</accession>
    <name>A0A392LXV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methionine S-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000369">
        <property type="protein sequence ID" value="MCH79792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47087">
        <property type="entry name" value="METHIONINE S-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47087:SF1">
        <property type="entry name" value="METHIONINE S-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21655" checksum="B0832E17D46A05B1" modified="2018-12-05" version="1" fragment="single">MILNPNPDAMTKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISAGDTDIAALVEIEKNSPHRFEFFMGLSGDQPICARTAWAYGKSGGSISHALSVYSCQLRQPNQVKVVFEFLKNGFQEISSSLDLSFEDDSVADEKIPFLAYLASILKDDSYFPYEPPAGSKRFRNLIAGFLKTYHHIPLTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYA3</accession>
    <name>A0A392LYA3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000699</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000512">
        <property type="protein sequence ID" value="MCH79937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="61"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="275"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="462" mass="52242" checksum="D8F646FAC4A31373" modified="2018-12-05" version="1">MDFKYYNEGARKRYILLRSHNMHQERGFALDILLGRPEIKQQLVVRKWETYNEILIQRDGDKHSVTLVKEFIANASQKLPGGNEFTSYVRGKLVDYSPSAINKLLGCDVPRRCAFRAMKEEFDDWDEPTRRVVKDFVALPGTEWLHGAGGDQPSKIPSTHFKPIARVWLEFFLRNIMMVSNTTEAQVDVAAGVKLIMEGEAINLGQLICASIYGLVHNTKSNFKIGHCNLINALCLAQDVPTPPLDDEFLIPMGGMRIKDLQRFSVLPKGYVPPNEGEEAAANVNQNDDNGDEDQHGIDEVMQQIDEFPEQPQVPVDQQAPHVPPSSHSVGELATLPHLMDLSQEAGLQWCYLDTQSSLYMEAMGVRDATPPNSLFAHLYPDQASWDTHLQEDHSFFLARQERQTSLWRAEIGACDRAMQAREEEARRREEMMKRMEDSPNVFDMDGFEGFDFMGTGPAGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYP4</accession>
    <name>A0A392LYP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000675">
        <property type="protein sequence ID" value="MCH80093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF219">
        <property type="entry name" value="ARCHAEAL ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="2">
        <location>
            <begin position="224"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="432" mass="49334" checksum="F7BAF1E3B1ECCCAF" modified="2018-12-05" version="1">MNRYEYKFIGKIVKYISNKINRSSLHVANYPVGIQSRVQNVKLLLDNGSDDGVHMEELLLKIIGLNIKLGDVSEGIPIIKERLCRKQILLILDDVDDIKQLQVLAGGLDWFGPGTRVIITTRDKHLLISHEIERIYAAEGMYGIEALELLRWMAFKNNEVPSGYEDILNRAVAYASGLPLVIEIVGSNLFGKSIEEWKYTLDGYERIPHKKIQEILKVSYDALEEEEQSVFLDIACCFKGCRWAEVEDILHAHYGHCIKHHLGVLAEKSLIKFSTWRTYVDVTLHDLIEGMAKEVVRQQSPKEPGERSRLWYCDDIIHVLKENTVVQVSRSFQKYWTRWKISDSIQLDGCKYLEEIRGIPPNLTELSALGCKSLTSSSKSMLVKQDNFSCIVFDFKTVPSARQTEGQETEQKLKFLSPTEPPDNFLSSAKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZY2</accession>
    <name>A0A392LZY2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Alpha-mannosidase</fullName>
            <ecNumber evidence="15">3.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0001326</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>N(4)-{beta-D-GlcNAc-(1-&gt;2)-alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;6)]-alpha-D-Man-(1-&gt;6)]-beta-D-Man-(1-&gt;4)-beta-D-GlcNAc-(1-&gt;4)-beta-D-GlcNAc}-L-asparaginyl-[protein] + 2 H2O = 2 alpha-D-mannopyranose + an N(4)-{beta-D-GlcNAc-(1-&gt;2)-alpha-D-Man-(1-&gt;3)-[alpha-D-Man-(1-&gt;6)]-beta-D-Man-(1-&gt;4)-beta-D-GlcNAc-(1-&gt;4)-beta-D-GlcNAc}-L-asparaginyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:56052"/>
            <dbReference type="Rhea" id="RHEA-COMP:14368"/>
            <dbReference type="Rhea" id="RHEA-COMP:14369"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28729"/>
            <dbReference type="ChEBI" id="CHEBI:60615"/>
            <dbReference type="ChEBI" id="CHEBI:60625"/>
            <dbReference type="EC" id="3.2.1.114"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="15">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">Belongs to the glycosyl hydrolase 38 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.-" evidence="15"/>
    <dbReference type="EMBL" id="LXQA010001188">
        <property type="protein sequence ID" value="MCH80556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004572">
        <property type="term" value="F:mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006013">
        <property type="term" value="P:mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006491">
        <property type="term" value="P:N-glycan processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.50:FF:000001">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.98.30:FF:000007">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.110.10:FF:000015">
        <property type="entry name" value="Alpha-mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.1180:FF:000019">
        <property type="entry name" value="Alpha-mannosidase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="entry name" value="Glycoside hydrolase 38, N terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.50">
        <property type="entry name" value="Glycoside hydrolase family 38, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.30">
        <property type="entry name" value="Golgi alpha-mannosidase II, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011682">
        <property type="entry name" value="Glyco_hydro_38_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015341">
        <property type="entry name" value="Glyco_hydro_38_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037094">
        <property type="entry name" value="Glyco_hydro_38_cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000602">
        <property type="entry name" value="Glyco_hydro_38_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028995">
        <property type="entry name" value="Glyco_hydro_57/38_cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050843">
        <property type="entry name" value="Glycosyl_Hydrlase_38"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607">
        <property type="entry name" value="ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607:SF3">
        <property type="entry name" value="LYSOSOMAL ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09261">
        <property type="entry name" value="Alpha-mann_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07748">
        <property type="entry name" value="Glyco_hydro_38C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01074">
        <property type="entry name" value="Glyco_hydro_38N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00872">
        <property type="entry name" value="Alpha-mann_mid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88688">
        <property type="entry name" value="Families 57/38 glycoside transferase middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="Galactose mutarotase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="Glycoside hydrolase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="13 15" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="10" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="6 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7 15" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Glycoside hydrolase family 38 central" evidence="16">
        <location>
            <begin position="245"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00093232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU361199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH80556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="912" mass="104278" checksum="6E371206F3A3FEB7" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0B8</accession>
    <name>A0A392M0B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001196</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001048">
        <property type="protein sequence ID" value="MCH80428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="48"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="3">
        <location>
            <begin position="208"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="31214" checksum="943879870C837163" modified="2018-12-05" version="1" fragment="single">MVEWPIPKNVKQLRGFLGLTGFYRKFVQHYAMLAAPLTALLKRNSFLWTNSAQQAFELLKVAMSEAPVLSLPNFEEQFVLETDASGAGMGAVLIQQGHPICYFSKQLCPQMLQASTYVRELCAIISAVKKWRTYLLGNTFIIYMDQRSLRELMTQVIQTPEQQFYLAKLLVYSYEIVQATPSDFKEFEYLNGLLFYKGKLFIPSASPLKLVLLEEFHGSTIGGHSGIHRTFGRLQENIFWHGMRQDVEKFVKACAIYQSLVGPFRPCGLCVNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0F1</accession>
    <name>A0A392M0F1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0001504</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the replication factor A protein 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001418">
        <property type="protein sequence ID" value="MCH80731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04480">
        <property type="entry name" value="RPA1_DBD_A_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04481">
        <property type="entry name" value="RPA1_DBD_B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04476">
        <property type="entry name" value="RPA1_DBD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047192">
        <property type="entry name" value="Euk_RPA1_DBD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013955">
        <property type="entry name" value="Rep_factor-A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003871">
        <property type="entry name" value="RFA1B/D_OB_1st"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165:SF4">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02721">
        <property type="entry name" value="DUF223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08646">
        <property type="entry name" value="Rep_fac-A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Replication protein A 70 kDa DNA-binding subunit B/D first OB fold" evidence="6">
        <location>
            <begin position="9"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Replication factor A C-terminal" evidence="7">
        <location>
            <begin position="306"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH80731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="459" mass="52659" checksum="C8EB6FAB9A0B3896" modified="2018-12-05" version="1" fragment="single">MANMTPSTPICDIVPGKIDFQLRVCVIHVWTVPDRVNPMEDGSIHMLFLDDKCGKIHATIRKDLIPKFKDQIEEGAAYVFENFMVGSCDQSYKAADHKFKLNFMKSTKIWKVSAPEILRYHFNFVSFPDILSANYEPRLLDVIGHIVERTDVKETEINGKMSKVLDVTLEDLEANRVHCTLWDEYADRLQTFMDTHNKSEPAVMILQLCKLKKYFGAMGVSNTFYGTKMLLNADVPDIVEYKLQMDGTERQLTQGVSQLTGPTILSLSDELLQTQRMTIEDLFECSQKCFGTVLVRTCDIEAALGWYYHACTSCASKFTIRDGSIYCGKCREHKTAVPRYKVHLQVIDNSGSATFTLFDRVVSQVLGRSVQDLLADMNQDQVYPPELDTFVDKQMLFKVDVNDANIFRXELDTFVDKQMLFKVDVNDANIFRNYRSYNVKRMTDDVEIINQFINLYALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1K3</accession>
    <name>A0A392M1K3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ty3 transposon capsid-like protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001927</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001931">
        <property type="protein sequence ID" value="MCH81146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045358">
        <property type="entry name" value="Ty3_capsid"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19259">
        <property type="entry name" value="Ty3_capsid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ty3 transposon capsid-like protein" evidence="2">
        <location>
            <begin position="92"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="49"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="235"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="246"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="338"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH81146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="567" mass="62861" checksum="D558663BB54A634A" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2K9</accession>
    <name>A0A392M2K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002031">
        <property type="protein sequence ID" value="MCH81228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10500" checksum="E208E48D13F9689D" modified="2018-12-05" version="1" fragment="single">HNVAHARHAHACPRRIGPLGPVQNMSPPSRHTRSTMADETHVQQSPENEVRRTHANASVVDEDPDPSTWVANEPLNTPSKWSVDFPDGMPDEFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4X5</accession>
    <name>A0A392M4X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002294">
        <property type="protein sequence ID" value="MCH81434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF18">
        <property type="entry name" value="RX N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="1">
        <location>
            <begin position="139"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="793" mass="89204" checksum="FB02F68DEF97C204" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M526</accession>
    <name>A0A392M526_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Flavonol synthase/flavanone 3-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0003315</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003781">
        <property type="protein sequence ID" value="MCH82507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209:SF590">
        <property type="entry name" value="2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209">
        <property type="entry name" value="OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00682">
        <property type="entry name" value="IPNSYNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="5">
        <location>
            <begin position="29"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH82507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17177" checksum="9842A77181D9CA6F" modified="2018-12-05" version="1" fragment="single">SAGKELLSLIALSLNLDENYFEKISALNKPEAFLRLLRYPGELGSXEEICGASPHSDYGMITLLMTNGVPGLQICKDKLKQPQVWEDVSHVEGAIIVNIGDMMERWTNCVYQSTLHRVMPTGKERYSVAFFMDPPSDCVVECFESCCSESSPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5B6</accession>
    <name>A0A392M5B6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003309</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003772">
        <property type="protein sequence ID" value="MCH82501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5B6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16763" checksum="1E5F2455DEB0DE4C" modified="2018-12-05" version="1">MREILIQQKCVKALNGDARMPAHLTPVEKTEMNDKAISVIILYLGDKVLREVARETIVVSMWTKLELLYLTKSLAHRQFLKQQLYSFRMVESKSIMENLAEFNKIINDLVNIEVNLKDEDKALLLLCVLLRSFENFKDTMLYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6H3</accession>
    <name>A0A392M6H3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004581">
        <property type="protein sequence ID" value="MCH83052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="13807" checksum="BFC40EEE41D55BBD" modified="2018-12-05" version="1" fragment="single">MSKEVVVVVVAAAAAAAAICXKTVAAVVAPKCFVETFESLEDLVAPTVAGFVVMPAVKIVVIVFVVAASVRDSVAGLYVDEIHVEMTVVASVAAVLAAETFVVAAESGFVIQAAVVASAAGTGSLVFATMTAAAAVVVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7T4</accession>
    <name>A0A392M7T4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pectinesterase inhibitor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004373</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the PMEI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005373">
        <property type="protein sequence ID" value="MCH83547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7T4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004857">
        <property type="term" value="F:enzyme inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd15800">
        <property type="entry name" value="PMEI-like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.40">
        <property type="entry name" value="Invertase/pectin methylesterase inhibitor family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035513">
        <property type="entry name" value="Invertase/methylesterase_inhib"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052421">
        <property type="entry name" value="PCW_Enzyme_Inhibitor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006501">
        <property type="entry name" value="Pectinesterase_inhib_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01614">
        <property type="entry name" value="PME_inhib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36710:SF18">
        <property type="entry name" value="PECTINESTERASE INHIBITOR 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36710">
        <property type="entry name" value="PECTINESTERASE INHIBITOR-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04043">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00856">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101148">
        <property type="entry name" value="Plant invertase/pectin methylesterase inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017323749" evidence="4">
        <location>
            <begin position="26"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="Pectinesterase inhibitor" evidence="5">
        <location>
            <begin position="28"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00038471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="188" mass="20957" checksum="633F4D9BBD1859A0" modified="2018-12-05" version="1">MDFTKTHLVLLIVSTTLLFAPTTYAVRTPQARVWTICKPTTNPLLCYKTLLPKALSTPKFNMYKAVDVEIQEAQAQVVKTVAKIANSIFTSSDKNIANALTICKEQYGNMVDSLIEVITLVSKRNAVEARFKFSAFISYHSSCEQAFVESKNAIPPFADDAKVVYDLGANILDILKAIEDRETRLAHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M838</accession>
    <name>A0A392M838_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ERD (Early-responsive to dehydration stress) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003761</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004428">
        <property type="protein sequence ID" value="MCH82948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M838"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005227">
        <property type="term" value="F:calcium-activated cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045122">
        <property type="entry name" value="Csc1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003864">
        <property type="entry name" value="CSC1/OSCA1-like_7TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027815">
        <property type="entry name" value="CSC1/OSCA1-like_cyt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13018:SF104">
        <property type="entry name" value="ERD (EARLY-RESPONSIVE TO DEHYDRATION STRESS) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13018">
        <property type="entry name" value="PROBABLE MEMBRANE PROTEIN DUF221-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14703">
        <property type="entry name" value="PHM7_cyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02714">
        <property type="entry name" value="RSN1_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0407">Ion channel</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="CSC1/OSCA1-like cytosolic" evidence="6">
        <location>
            <begin position="18"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="CSC1/OSCA1-like 7TM region" evidence="5">
        <location>
            <begin position="121"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="44"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21647" checksum="84992A64DCF8C234" modified="2018-12-05" version="1" fragment="single">MSLFAVQTKSKLSWIAQLRSNPTQQKYKHGGGIFGFFGTKDNLIDHYGKKLEDIEENLRLKQSEASLIAEEARAAFVFFKSRYGAASAFHLQPSINPTQWITEPAPQPHDVYWPFFSESFMKQWISKKFVTQVITGYLPSLILQMSLKLVPPVMGFLSSIQGYISHIFHQLEVILDLRDITGKLAVAVPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M963</accession>
    <name>A0A392M963_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Embryogenesis-associated protein EMB8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004471</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily. AB hydrolase 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005526">
        <property type="protein sequence ID" value="MCH83645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M963"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047372">
        <property type="term" value="F:monoacylglycerol lipase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034338">
        <property type="term" value="F:short-chain carboxylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050960">
        <property type="entry name" value="AB_hydrolase_4_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10794">
        <property type="entry name" value="ABHYDROLASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10794:SF63">
        <property type="entry name" value="ALPHA_BETA HYDROLASE 1, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="3">
        <location>
            <begin position="7"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="16"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13228" checksum="37D43BE3FF90E205" modified="2018-12-05" version="1" fragment="single">SDDESTPIVILIPGLTSDSSSPELRVQGSNPGEAKRGWKVVVSNHRGFGGVPITSDCFYNSGWTEDTRTVVNYLHKENPRAPLFIVGTSIGANILVKYLGEDGENTPVAGAVAVCSPWDLLVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA33</accession>
    <name>A0A392MA33_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005209</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006727">
        <property type="protein sequence ID" value="MCH84377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF86">
        <property type="entry name" value="VIRAL MOVEMENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="452" mass="51725" checksum="EF186EE51831132D" modified="2018-12-05" version="1" fragment="single">MLEMMAKMKLDEENEDEELPSDLNKDTTGDTVSNIHKGQYNPTIAKRKFHRIQGTTHNQQALEATSLTKMASLEDKACQGIYGYSKHHQKPMTCDLITNLYQTNHHENWLLFGDFNLVLNSAEKEGGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTKFPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEEWNKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSDTKNQINLLETKLDGLLSNEEQWWAHRAKNKDIQATFQDYFTELFTSSNPINTQETINVVANLVTPHMYDNLNSEFTAAEVSFATHQLKGNAAPGPDGLNASFYQAYWDTIGGDITQTVLEILNNGGNPDPYNNTFICLIPKHNNPTCPADFRPIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAK3</accession>
    <name>A0A392MAK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006978">
        <property type="protein sequence ID" value="MCH84540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4973" checksum="5C92A801F9D09C2A" modified="2018-12-05" version="1" fragment="single">RLKEELRGWNREVFGILDLNIENTVKELNEAEGLAAIDGGEFGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB38</accession>
    <name>A0A392MB38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">T-complex protein 11-like protein 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004838</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TCP11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006103">
        <property type="protein sequence ID" value="MCH84008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008862">
        <property type="entry name" value="Tcp11"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12832:SF34">
        <property type="entry name" value="T-COMPLEX PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12832">
        <property type="entry name" value="TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="117"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="129"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="470" mass="54609" checksum="4548279CC1C216B2" modified="2018-12-05" version="1">MSLLTKAQMRLARQDQLRQAAKNGVEMRHANERVKLGTKVESRVQQAEANRMLILKAHRQRRASLRERSSQSLMRRMTRESKYKERVRAAIHQKRVAAETKRLRLLEAEKKRAHAQVLQARHVAKSVSHQREIERRKKKDELEDRLQRAKRQRAEYLRHRGRLRGYAWENWITMSKQAEYLSRKLASSSIRQNXYSSKLKCNRCWRRFLRQKRTTFALTKAYAVLGINEKSVKSLPFEQFALLIESASTLQTVKTLLDRFESRLRVFTAVVPASYFSSLDNIDHLLKRVVSPKKRATPRSSARSLAKKADLVKETNNRLSRYQVRVVLCAYMILGHPDAVFSTMGEREIALAKSAQEFVHMFELLIKIILEGPIESFDDESVSVVMKRCTFRSQLAAFDKAWCSYLNCFVVWKVKDARSLEDDLVRAACQLEASMIQTCKLTPEGVGISHDMKAIQHQVISHVNSYEFSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBQ9</accession>
    <name>A0A392MBQ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cullin-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007645">
        <property type="protein sequence ID" value="MCH84942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="321"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="321"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="340" mass="38996" checksum="C44E24ED1FCB0C1F" modified="2018-12-05" version="1">MEQPVDFEALKAYGFDVQEYFKNQGWLKYFEMLNGPIYTILVKDFWPRCDVIEQADADREYKNKVAEDPKNNKGKSRKDLGLRDFTETEIRSGVTGFEVILTQNNIAQVLKIPNQGLFKTFTPSSGKKSPYVSRIAKHCYIDEDSEPSNKVREMKETQRLLSRIMFGSFFPREGGTDQLSWDHKHFIYFLTAGKKMNLAAYIFNHLCKSIRSAQNPAKLTPQIAYPILLSEIFYQCAVTDKIERSQSWDLLEEQRASFINGKNPPTLFSNEPPEVILEYIRLMKAEGIKITRADIANVSPEDKQKKRKRIIKIKQEKVTEAKTSGNTSASGAEVLKPSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCG8</accession>
    <name>A0A392MCG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative B-block-binding subunit of tfiiic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0004794</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006025">
        <property type="protein sequence ID" value="MCH83964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000127">
        <property type="term" value="C:transcription factor TFIIIC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042791">
        <property type="term" value="P:5S class rRNA transcription by RNA polymerase III"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006384">
        <property type="term" value="P:transcription initiation at RNA polymerase III promoter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000665">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056020">
        <property type="entry name" value="DUF7599"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056063">
        <property type="entry name" value="DUF7646"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044210">
        <property type="entry name" value="Tfc3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007309">
        <property type="entry name" value="TFIIIC_Bblock-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056428">
        <property type="entry name" value="WH_GTF3C1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15180">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15180:SF1">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04182">
        <property type="entry name" value="B-block_TFIIIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24538">
        <property type="entry name" value="DUF7599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24657">
        <property type="entry name" value="DUF7646"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23704">
        <property type="entry name" value="WHD_GTF3C1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="General transcription factor 3C polypeptide 1 winged-helix" evidence="7">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="B-block binding subunit of TFIIIC" evidence="6">
        <location>
            <begin position="94"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="DUF7599" evidence="8">
        <location>
            <begin position="208"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="DUF7646" evidence="9">
        <location>
            <begin position="298"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF23704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF24538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF24657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH83964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="331" mass="37758" checksum="F07BD9FEB7492ABD" modified="2018-12-05" version="1" fragment="single">MDSALNAALEEICTHDVEEGITLQSLWSKLQSINLTPSFQQSIFTNLLRIPTLRFEPPNPNPNYYDQQHLIKIFPQQTLSHNFLGIYDPQSLQQSQLRVLHLLANAKHNGITQTQLSKQLRIDPNNFHYVLRTLECKGLIVKRSALEKKTTQIHTSSSVNYTPLNITTHLVYLRRYTNKPLAQHQRFEFQITQDSQQQQLHTDVRLADYEPPIKAICHKLANANGKVLLVSDIKKDLGYCXSRPKQRAWRQIAARLKAHQIVEQFDAKVNGKIEACLRLLDPITTESGNEDKNSDSGNICQVTDQLVELPIEHQIFDIIDTAGSDGITIKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCV9</accession>
    <name>A0A392MCV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008349">
        <property type="protein sequence ID" value="MCH85357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="359" mass="40168" checksum="5EF93B06D7838025" modified="2018-12-05" version="1" fragment="single">MKKYFAMYELAVIGLQIDERTTFMDTLLKKIEGTWIGTYKLRANVSLFKRDXDXSGGAANRTGREVEKKSLESRGRKVGVSFKEVLGVGGGGGGNKELKEFDALPAKDLLIPHFDVRKLSEPEEAIVVEEVPENVEFLKHCYVGRLREGMVADSIQLDIAMEGFQEIKATLLGFDMILLSSSFEDGVLKALQADGEWWNNKFSELNPWSTADKVLGRRIWVRFFGIPPHVWGRECFHRIVQSFGKLVSLDLQTENQSRLDVARAQVVVSSWDFVDMGKQIKVKDEIFCVRVVEERFGDIDLGVKRNPDRHLFSDGSLVGDGRSTAESDGPPTAMRDVFGGEEAVGNGWIEVWSECGSGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEE3</accession>
    <name>A0A392MEE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FCA-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009328">
        <property type="protein sequence ID" value="MCH85887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10215" checksum="A9CAAE514B6C3CA7" modified="2018-12-05" version="1" fragment="single">EVPHLICLQITKTKIFQSVTGVNTTALMWEKPEEYALYDKESQKQHEQDDPSFLQPQLSLSSSQEVSQTQQETNHDHMQSETSPVVEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEJ2</accession>
    <name>A0A392MEJ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008670">
        <property type="protein sequence ID" value="MCH85525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="3">
        <location>
            <begin position="103"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="178"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="304"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="8"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="178"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="304"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="427" mass="47635" checksum="30912D158179A7BF" modified="2018-12-05" version="1" fragment="single">IPTGNGPINQLKATVEEVLRQNTVLRAAMEKIEQERAADDGPGDEVLATQPLAQALWDAPVPENFKIPNLPTFEGRTDPLEHLMAVGTQLAIIGAAEHLKCKLLSGTLKEAAFQSYMGLPNNSITSYDDFHKKFIRQFAGSKHVMVTATSIFGIRQNSSESLREYLARFSEAIIQESNAEKRSREAKEKGADKGNARTPDRSQRRWSQRGGWSGQPYQSPPWRNDRPFNMEPSTPLNTTRVNVLDEILQAGLAELPPTRSDGGLRLVPNLDEWCTYQRCKGHDTEKCYKLKALIEELIREGHLKKKKERGKKQRGRPSTLSQEDSTEVEKPIPPGRDGRGILPHDNDPLVIQVQILNCDIKIVLVDSGNFADVMYWEAFSGMQLAGEQLQPYLGTLVGFSGEQVEVMGHITLLTTFGEDDHAKTVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEP8</accession>
    <name>A0A392MEP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006809</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009463">
        <property type="protein sequence ID" value="MCH85956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7232" checksum="D77E1025827CFF89" modified="2018-12-05" version="1">MLSGRLIRVTEHLFALRAEADFNILGSTMSGTNRLSEVGAEPTMVSETLSRIGTFRRLLSSPPLLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFI1</accession>
    <name>A0A392MFI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010039">
        <property type="protein sequence ID" value="MCH86267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9876" checksum="A6612131B63E1624" modified="2018-12-05" version="1">MEGTWEDYLEMNQNMLGFGHNNQVLIALVLTSGRDPGIVPRNSYPPVPDEYDGSVSINNLLAALIVQYATTVWSDLIITAHGWASVLDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG37</accession>
    <name>A0A392MG37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009008">
        <property type="protein sequence ID" value="MCH85718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="44"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7098" checksum="B8AF39F8CD2AA1DA" modified="2018-12-05" version="1">MNIESQNARPQRPRGHLAHAQHRAQEQQGHHQRNDKQRGSGTVAPPSDLAATAPAPAPLPATGRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG41</accession>
    <name>A0A392MG41_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010342">
        <property type="protein sequence ID" value="MCH86462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="29"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="362" mass="41632" checksum="52A309D1206B7C8A" modified="2018-12-05" version="1">MKQVISDYVNHCTICQQAKHSTTLPAGLLNSLPIPSQVWEDISMDFITGLPNSCGFTIIFVIVDRLTKFGHFLPLKADYDSKVVAEAFMQHVVKLHGMPKSIVSDRDKVFTCRFWQHLFKLQGTTLAICFTFHNPKIWAKILHWAQYWYNTSFQTNAAMTPFKALYGRDPPTLTRSSVSINQIEGIVSAQLISREHILSQFQQNLHKAQQVMKGQADKKRKHVELEIGDLVLVKLQPYRQVYVAARVNHKRSLKYFGPFLISAKIGYVAYKVVLPPTARIHLVFHVSHLKKFLGNANACHLKGSLFVPQVLVKWQDMDDSFATWEDKKDMELNFPNFNLKVKVHVNKGSIIVRENDDRERER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG65</accession>
    <name>A0A392MG65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007334</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010376">
        <property type="protein sequence ID" value="MCH86477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="15222" checksum="8BDB9DE63A5C7341" modified="2018-12-05" version="1">MPKKVPRPMAPSQFRFESAWLLDKTYKDMMAASWNQNQSVSNNLVHVQQELKRWRFQTCDQILRTKKHLMARIAGIQRSLQHGNTRRGIWQLESKLQGELREILKQEELMWFQRSRAKWLKDGARNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGM3</accession>
    <name>A0A392MGM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010365">
        <property type="protein sequence ID" value="MCH86471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="169"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="279" mass="32336" checksum="CBC7C79FA506D1D2" modified="2018-12-05" version="1">MWGVDIVGPFPTGYKQARWIIVVVDYFTKWIEAEPVSSISAEQVKIFYWKKIICRFGLPKYIVSDNGTQFASEKVVEFCQSKGIQNTFISVEHPQANGQAESANKVILRALKRRLASKGEAWVAHISPILWSYLTTPQSSTGEAPFTMVYGSDAMIPVEIDPPSWRRETTTLEENNRALEENLDMIEERREREHFREFAIKQRAARRYNSRVIQRRFREGDLVLKRPMGKDKGGKFAANWEGPFRIHEAFQGGAYRLETMEGRILPRTWNVTNLKFYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGS9</accession>
    <name>A0A392MGS9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoxygenase</fullName>
            <ecNumber evidence="6">1.13.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0007103</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Lipid metabolism; oxylipin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the lipoxygenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.-" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010010000">
        <property type="protein sequence ID" value="MCH86249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00382"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031408">
        <property type="term" value="P:oxylipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.450.60:FF:000002">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.372.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020834">
        <property type="entry name" value="LipOase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001246">
        <property type="entry name" value="LipOase_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027433">
        <property type="entry name" value="Lipoxygenase_dom_3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00087">
        <property type="entry name" value="LIPOXYGENASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00468">
        <property type="entry name" value="PLTLPOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00081">
        <property type="entry name" value="LIPOXYGENASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="6" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0925">Oxylipin biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoxygenase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH86249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="348" mass="38997" checksum="93176CF90F1772CA" modified="2018-12-05" version="1" fragment="single">VRSLYDGGIKLPTDVLSKISPIPLFKELFRSDGESALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQLYGNNTSTITKGNLEPNMDGVTVEEAIQNNRLYILDHHDTLFPYLRKINATETKAYATRTVLFLQNDGTLKPLAIELSKPHPQGDSFGPVSNVYLPASEGVEASIWXXXKAFVIIIYLFMKPTWVGLVVLAWDLRVCSSLRLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGGYALEMSAVVYKDWNFTEQGLPNDLIKRGVAVEDPASPYGLRLLIEDYPYASDGLEIWAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH64</accession>
    <name>A0A392MH64_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0007510</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in sporophytic self-incompatibility system (the inability of flowering plants to achieve self-fertilization).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010010699">
        <property type="protein sequence ID" value="MCH86651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048544">
        <property type="term" value="P:recognition of pollen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00028">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00053">
        <property type="entry name" value="EGF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01098">
        <property type="entry name" value="PAN_AP_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.90.10.10:FF:000001">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.4.10:FF:000002">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.90.10.10">
        <property type="entry name" value="Bulb-type lectin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.4.10">
        <property type="entry name" value="Hepatocyte Growth Factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001480">
        <property type="entry name" value="Bulb-type_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000858">
        <property type="entry name" value="S_locus_glycoprot_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035446">
        <property type="entry name" value="SLSG/EP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444:SF183">
        <property type="entry name" value="APPLE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444">
        <property type="entry name" value="BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01453">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08276">
        <property type="entry name" value="PAN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00954">
        <property type="entry name" value="S_locus_glycop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002686">
        <property type="entry name" value="SLG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00108">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00473">
        <property type="entry name" value="PAN_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50927">
        <property type="entry name" value="BULB_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="15" id="KW-0418">Kinase</keyword>
    <keyword evidence="15" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6 15" id="KW-0675">Receptor</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0732">Signal</keyword>
    <keyword evidence="15" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017199533" description="non-specific serine/threonine protein kinase" evidence="11">
        <location>
            <begin position="23"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="domain" description="Bulb-type lectin" evidence="13">
        <location>
            <begin position="24"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="12">
        <location>
            <begin position="288"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="Apple" evidence="14">
        <location>
            <begin position="344"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH86651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="431" mass="49101" checksum="B306CBA155745D11" modified="2018-12-05" version="1" fragment="single">MATLPFMSFVVMLLLFSTQISSDTDIITQFHSLHDGTTNTLVNGTFELGFFSPGSSTNRYVGIWFKNIPIKTVVWVANRDHPISDKSGILSITKEGNLVLFGKNGTTHWSTNITTKSSTSSFIARLLGTGNLVLNDEKENNGYDVYLWQSFDYPTDTFLPGMKVGWNLTSGLNRRLTAWNNWDDPSSGQITYGLIRSDIPETKIQNGSLVLYRSGPYNGLRFGATQKLKHVPLFILNFFYKKDEYYFTYQPRNQSILSRFVINQTVSALQILKWTEGKQRWMLHLNIPRDECDNYNRCSSFGICGMMGKSSMCECLSGFTPKSPQNWSVKDWSQGCVRSENWSCREKNKDGFIKFQNMKVPDTKISWINRSMTLKKCKTKCWENCSCTAYANSNIIEDGSGCILWFGDLLDLRQLPDSGQDLYVRSHTSEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHG2</accession>
    <name>A0A392MHG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative zinc-finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007393</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010475">
        <property type="protein sequence ID" value="MCH86535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039278">
        <property type="entry name" value="Red1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563:SF3">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="342" mass="38643" checksum="9F3281B34DEA6CD1" modified="2018-12-05" version="1" fragment="single">MYINSRRTLDDRLAAYDSALSALCQHASAVPEDRTCESACILDLFLQMMDCLCMTGNVENAIQRSYGVFSTTTKSDEPNLLLLSDILNCLTISDKCVLWVCCVYLVIYRKLPGAVVQKFECEKDLLDIEWPSVILSEDENERAIKLMETAAEYINSCAFTMKSEADIKYAQLFALNHLRCMVALDSLECLRSLLKKYAEIHPFCIELVLVSAQIQKREFGVDNFVVFEDAISRWPKIVPGIQCIWNQYIANAIHNQRIDLAKEITVRWFHSVWQVQDPPYGGMDATDDGSSCGLLGLEACIAVNKARNTVSFVGLEQYRRKYAMFLVCDASSLKEDDPKSAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHN2</accession>
    <name>A0A392MHN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007681</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011002">
        <property type="protein sequence ID" value="MCH86821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9827" checksum="4C8C8AA3BE676E1B" modified="2018-12-05" version="1">MQFKFFKKRETVGYNNKVIVMEIGNVFAGKMELLQSLSDLSLNGKLDILQRKVLRLLSAAISSREVTLXDGRECWFVNNDRGYATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIF9</accession>
    <name>A0A392MIF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011877">
        <property type="protein sequence ID" value="MCH87277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37204">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37204:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8960" checksum="FA2DFD9826BF11E8" modified="2018-12-05" version="1">MYHFSMFHASHHIVPVPATKEEIEAEASSVETVAARLCPLNIVLDRVVLTSTGVLLGCWQVIFHNLNTSPLILQTCIIDMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKJ5</accession>
    <name>A0A392MKJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Secretory pathway protein Sec39</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008581</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012754">
        <property type="protein sequence ID" value="MCH87703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070939">
        <property type="term" value="C:Dsl1/NZR complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000149">
        <property type="term" value="F:SNARE binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006890">
        <property type="term" value="P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013244">
        <property type="entry name" value="Sec39_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15922:SF2">
        <property type="entry name" value="NBAS SUBUNIT OF NRZ TETHERING COMPLEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15922">
        <property type="entry name" value="NEUROBLASTOMA-AMPLIFIED SEQUENCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08314">
        <property type="entry name" value="Sec39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Sec39" evidence="5">
        <location>
            <begin position="7"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="302" mass="34873" checksum="F8D093556ED714E4" modified="2018-12-05" version="1" fragment="single">MPINEAAVALAESGKIGALNLLFKRHPYSLSPFVLEVLASIPETVPVQMYGQLLPGRSFPSGVSVRQDDWVECKKMVNFINTSVKNHDIQIQVKTEPLVKHFLGFFWPSIDELSKWYMDRARAMDDFSGQLDNCLSLLEFALRKGISELQQFHQDVLYLHQVIYSDDNDSETGFNMSLVMWGDLPDYEKFKFMLKGVKEENVTERLHNRAIPFMREKFHRVSLVGDVEESFLVRWLKEMALQNKLDMCLVVIEEGCRNFQSNVYFETEVEAVDCALQCIYLCTVIDRWSIMAAILSKLPQMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKM0</accession>
    <name>A0A392MKM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="17">Receptor-like protein kinase HSL1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">A2U01_0008943</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the protein kinase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013429">
        <property type="protein sequence ID" value="MCH88062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033612">
        <property type="term" value="F:receptor serine/threonine kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:002903">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000512">
        <property type="entry name" value="Receptor-like protein kinase HSL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050647">
        <property type="entry name" value="Plant_LRR-RLKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056:SF29">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN KINASE HSL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="8 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="11 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-0675">Receptor</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="14" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 15" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="16">
        <location>
            <begin position="194"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCH88062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="461" mass="51044" checksum="3096079ED3A0D2D1" modified="2018-12-05" version="1" fragment="single">QLTTLHLDGNQLSGTLPSEIISWQSLDTLTISRNKISGQIPVAMSSLPKLVYLDLSENNISGEIPPQLVKLNFIFLNLSSNKLTGSIPDEIDNLAYETSFLNNPQLCTHNENLNLSSCLAKTTPHSRKNSSLKSKLVALILAVTVAVLLATTFLAFCMLKKRCGKKHCGPKLSTWRLTSFQRLDLTEINIFSSLTDNNLIGSGGFGKVYRIASTRPGEYVAVKKIWNVKDVDDKLDKEFMAEVEILGNIRHSNIVKLLCCFSSETTKLLVYEYMENHSLDKWLHTKKIKTSVSGLSSHAENQLVLSWPTRLNIAIGAAQGLCYMHHECSMPIIHRDVKSSNILLDSEFKASIADFGLAKMLAKNGEPYTASVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGRXPNNGGDNACSLVDWAWQHCNEGKCITDAFDEAFHKGDFASSSTVQFKFCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMD3</accession>
    <name>A0A392MMD3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">E3 ubiquitin protein ligase</fullName>
            <ecNumber evidence="6">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0009128</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the BRE1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010013801">
        <property type="protein sequence ID" value="MCH88245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMD3"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033503">
        <property type="term" value="C:HULC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013956">
        <property type="entry name" value="E3_ubiquit_lig_Bre1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23163:SF8">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23163">
        <property type="entry name" value="RING FINGER PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="6 7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0833">Ubl conjugation pathway</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="101"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH88245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17234" checksum="AA25AEF4659BE788" modified="2018-12-05" version="1" fragment="single">WKVTAGESGVRICFGYVWLGGLSEKNGDNVILVPVTRMWILGGGTFFVYYLHCFALLFYVPLADFNEVHGLPEVRESESKARSQAEMLKNAYDEHGLELRVRAANEAEAACEQRLSAAEAEIEELKAQLDKTESSMFVVFYLGAKFLVMRSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMF1</accession>
    <name>A0A392MMF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Exocyst complex component EXO84C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009571</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014636">
        <property type="protein sequence ID" value="MCH88680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17412" checksum="B46028C9FC3DDD8F" modified="2018-12-05" version="1" fragment="single">LAEMESSEEEDDFPSIESIIPQSKVDSLYQSQTEKYGVANVVKYRPWWIAVVDFWTTAMANFRKPYCAARYVVWNLLFVYLHVPSSVQELLDCMISIIIINGMASASLEDIDDKTCHSFQGIRKLCCELLDLKDAVENLCGNMHSKFLAFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMZ3</accession>
    <name>A0A392MMZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Protein COBRA-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009773</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
            <topology evidence="1">GPI-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the COBRA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015031">
        <property type="protein sequence ID" value="MCH88880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010215">
        <property type="term" value="P:cellulose microfibril organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052324">
        <property type="term" value="P:plant-type cell wall cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056900">
        <property type="entry name" value="COB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006918">
        <property type="entry name" value="COBRA_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31673:SF65">
        <property type="entry name" value="COBRA-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31673">
        <property type="entry name" value="PROTEIN COBRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25079">
        <property type="entry name" value="COB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0336">GPI-anchor</keyword>
    <keyword evidence="6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="COBRA C-terminal" evidence="7">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF25079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH88880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11810" checksum="B6C9D7E062482C09" modified="2018-12-05" version="1" fragment="single">MNYSNWNLVVQHPNFDNLTQLFSFDYKSLNPYGSINDTAMLWGVKFYNDFLNQAGPSGNVQSELLFRKEDMSHFSFGKGWGFPHRIYFNGDNCVMPPPDAYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN92</accession>
    <name>A0A392MN92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA pseudourine synthase 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015230">
        <property type="protein sequence ID" value="MCH88986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7306" checksum="2EB7308A1A26AAF5" modified="2018-12-05" version="1" fragment="single">HEPPVMACEVPILLKEPDVLTVCKPASVPSLANARIALVAINTGMKRHPAVIILFCVGFSTTNVXRED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQS7</accession>
    <name>A0A392MQS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor IIIB 90 kDa subunit-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010361</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016199">
        <property type="protein sequence ID" value="MCH89465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12406" checksum="4DAEA5A49E04B72F" modified="2018-12-05" version="1" fragment="single">LSGGLDCGHDPPAFQRAERERTVKSQSEENANQSADFAMDSNGAYESQIESHVSEPESIGGDEEYVATKDGEHGKSHIEDDMNAKTQDESESLSDIDDKEVINKFHASRISFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQU1</accession>
    <name>A0A392MQU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hyoscyamine 6-dioxygenase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010532</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016557">
        <property type="protein sequence ID" value="MCH89632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050295">
        <property type="entry name" value="Plant_2OG-oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47991">
        <property type="entry name" value="OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0847">Vitamin C</keyword>
    <feature type="domain" description="Non-haem dioxygenase N-terminal" evidence="5">
        <location>
            <begin position="23"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="Isopenicillin N synthase-like Fe(2+) 2OG dioxygenase" evidence="4">
        <location>
            <begin position="147"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22629" checksum="6CCECEEF49890D41" modified="2018-12-05" version="1" fragment="single">MTDPSRIIGSLYRAGLLARYTEQVINHGVSVNQMKETMSVFKEIFQMPEEYKKKLCTNDPSKPCKMFTSSFNYATEKVHLWRDSLRHPCYPLEQWQHLWPENPTTYRECVGDFSNEVKELGSRIMNLISEGLGLKCGYFDNDLTGSMILSVNHYPSCPEPSLTLGMSKHSDPNLITILMQDDVSGLQVLKDGKWIAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRJ0</accession>
    <name>A0A392MRJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">14-3-3-like protein D-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010827</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 14-3-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017209">
        <property type="protein sequence ID" value="MCH89923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.190.20">
        <property type="entry name" value="14-3-3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000308">
        <property type="entry name" value="14-3-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023409">
        <property type="entry name" value="14-3-3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036815">
        <property type="entry name" value="14-3-3_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023410">
        <property type="entry name" value="14-3-3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18860">
        <property type="entry name" value="14-3-3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00244">
        <property type="entry name" value="14-3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00305">
        <property type="entry name" value="1433ZETA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00101">
        <property type="entry name" value="14_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48445">
        <property type="entry name" value="14-3-3 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00797">
        <property type="entry name" value="1433_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="14-3-3" evidence="2">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13678" checksum="BAA2D66031481871" modified="2018-12-05" version="1" fragment="single">MCSQNNSYLEIPVHLMILDLLFFHRHIKFAIKPLSATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS88</accession>
    <name>A0A392MS88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PLAC8 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018173">
        <property type="protein sequence ID" value="MCH90377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6307" checksum="92E566E9AD234708" modified="2018-12-05" version="1">MTQESRTLEINNVQDGTWHGRGDTVCIGGIRNGNKPLAELIPPPIESIKLTDENYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTW3</accession>
    <name>A0A392MTW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Serine/threonine-protein kinase PBS1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0011910</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019457">
        <property type="protein sequence ID" value="MCH90986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000248">
        <property type="entry name" value="Serine/threonine-protein kinase PBS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985">
        <property type="entry name" value="OS07G0668900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985:SF44">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE PBS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="61"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17651" checksum="187E1E642AD71064" modified="2018-12-05" version="1" fragment="single">EVEVDLTLPHHKPLRPDKLRSTSNGGASKREFTAALKDGPPGQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLESTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEFMPLGSLEDHLHGMIVFFPPHIGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU33</accession>
    <name>A0A392MU33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polygalacturonase QRT3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011451</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018529">
        <property type="protein sequence ID" value="MCH90535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004650">
        <property type="term" value="F:polygalacturonase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039279">
        <property type="entry name" value="QRT3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33928">
        <property type="entry name" value="POLYGALACTURONASE QRT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33928:SF5">
        <property type="entry name" value="POLYGALACTURONASE QRT3-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="260" mass="27848" checksum="9D6F28463FB1707B" modified="2018-12-05" version="1" fragment="single">TTEGILVQQGHETFISSCFLGQHSTVGGDKGEKDYSGVAIDLASNDNAVTDVAIFSAAIGIVLRGQANILSGVHCYNKAASFGGIGILVKLAGNSLTRIDNCYMDYTGIVMEDPVQVHVTNGLFLGDANILVKSVKGQILGLNIVDNMFSGDPNKKVPIVNLDGEFSNVDQVVIDRNNVNGMRLRSTVGKLTVSGNGTKWEADFSSVLVFPNRISHVQYSFFAQGEPKFVAHSVTNVSXXXXXVESEKEAKGLVFFSVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU39</accession>
    <name>A0A392MU39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellulose synthase A catalytic subunit 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011915</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019463">
        <property type="protein sequence ID" value="MCH90991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16617">
        <property type="entry name" value="mRING-HC-C4C4_CesA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027934">
        <property type="entry name" value="CES_Znf_RING"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14569">
        <property type="entry name" value="zf-UDP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cellulose synthase RING-type zinc finger" evidence="2">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15266" checksum="171649A90EC5290D" modified="2018-12-05" version="1" fragment="single">SKPXXXLNGQICQICGDTVGLTATGDVFVACHECSFPLCHPCYEYERKNGQSCLQCKTRYKSHKEGPRVKGDDDDEDDXXXXXKYGQGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLSLTNGQLLFKYAIMHISFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVG8</accession>
    <name>A0A392MVG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018867">
        <property type="protein sequence ID" value="MCH90688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9405" checksum="F460AAE286D4DDC7" modified="2018-12-05" version="1">MLLDASTGGSLKNKNENEAKDLVEIIAQNEYRAQNDRGTKKIGGVLELDTQNVLLAQSKLMTNQIEALVKHLTTPRPYLNRKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVW3</accession>
    <name>A0A392MVW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Homeobox-leucine zipper protein ATHB-15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019804">
        <property type="protein sequence ID" value="MCH91145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08875">
        <property type="entry name" value="START_ArGLABRA2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044830">
        <property type="entry name" value="HD-Zip_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002913">
        <property type="entry name" value="START_lipid-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950:SF1">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01852">
        <property type="entry name" value="START"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00234">
        <property type="entry name" value="START"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50848">
        <property type="entry name" value="START"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0371">Homeobox</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="START" evidence="2">
        <location>
            <begin position="28"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="230" mass="24820" checksum="34B236694D3DEF32" modified="2018-12-05" version="1" fragment="single">TNLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEVQEFNFSLLIFSSNMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVZ3</accession>
    <name>A0A392MVZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019872">
        <property type="protein sequence ID" value="MCH91175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4969" checksum="0C3A371ED18B1AC5" modified="2018-12-05" version="1">MSLNLNELESEFEIEEGTVESEDEFEAEDEDESHPRRNVERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWT3</accession>
    <name>A0A392MWT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein TRANSPARENT TESTA 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012893</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021549">
        <property type="protein sequence ID" value="MCH91961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11206">
        <property type="entry name" value="MULTIDRUG RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7735" checksum="769EBCCC371A0118" modified="2018-12-05" version="1" fragment="single">MEKRNKIGNMENAEIQIDALSICLNINGWEMMISLGFMAAASVRVANELGKGSAKAAKFAVNMIVLTSFTIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX07</accession>
    <name>A0A392MX07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021787">
        <property type="protein sequence ID" value="MCH92057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5369" checksum="1467699F93D7BD1C" modified="2018-12-05" version="1" fragment="single">VCVTLMKYLSTCAIVNIAFDSYNTTESLFIDVENNISFASDLASFMEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY03</accession>
    <name>A0A392MY03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative rhamnose biosynthetic enzyme 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0013365</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022661">
        <property type="protein sequence ID" value="MCH92426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000304">
        <property type="entry name" value="UDP-glucose 4,6-dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43000">
        <property type="entry name" value="DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-binding" evidence="4">
        <location>
            <begin position="8"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="32035" checksum="228872661D8B2249" modified="2018-12-05" version="1" fragment="single">MYEPKNILITGAAGFIASHVTTRLINRYPSYKIVALDKLDYCSNFKNLQSCTSSPKFKFIKGDICSADIVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRATNCVKRFIHVSTDEVYGETDLDTEIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGVIGQVYNIGTQKERSVLDVAEEICKLFKLDPKGVIQFVQDRPFNDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYV6</accession>
    <name>A0A392MYV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peroxisomal-2-hydroxy-acid oxidase GLO1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0013022</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>glycolate + O2 = glyoxylate + H2O2</text>
            <dbReference type="Rhea" id="RHEA:25311"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:29805"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="EC" id="1.1.3.15"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="6">
            <dbReference type="Rhea" id="RHEA:25312"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Photosynthesis; photorespiration; glycine from 2-phosphoglycolate: step 2/3.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021870">
        <property type="protein sequence ID" value="MCH92089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003973">
        <property type="term" value="F:(S)-2-hydroxy-acid oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009854">
        <property type="term" value="P:oxidative photosynthetic carbon pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578:SF107">
        <property type="entry name" value="2-HYDROXYACID OXIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10578">
        <property type="entry name" value="S -2-HYDROXY-ACID OXIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="3" id="KW-0323">Glycolate pathway</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN-dependent dehydrogenase" evidence="7">
        <location>
            <begin position="8"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00036241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH92089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7712" checksum="155AD712D26FEBC0" modified="2018-12-05" version="1" fragment="single">FDLVIYQIGRPVVFSLAADGETGVRKVLKMLHDELEITMALCGCCSLKDITRDHVVTEWDRPRIAPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N044</accession>
    <name>A0A392N044_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022442">
        <property type="protein sequence ID" value="MCH92328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N044"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053283">
        <property type="entry name" value="TUNICAMYCIN_INDUCED_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34454:SF2">
        <property type="entry name" value="PROTEIN TUNICAMYCIN INDUCED 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34454">
        <property type="entry name" value="TUNICAMYCIN INDUCED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="29328" checksum="DD979F7A1A0FFB94" modified="2018-12-05" version="1" fragment="single">HDVDAGVLKKVVLADGAVVTVKGARSVSLRHPLNLPLPLNRTQNGFAAGLLTLAEHLRHASRGQSAPLLSLRIVGPTSLEAPSSASTSSNNRLKLKRLAPGLVELSSQSKAKLIDALSTVDLQEEAPTLLTPTQFTALWPLASLNGSNANLLGFERLLSSVLGPKANEKGSFRLLKADVSAQTFVKVGFQAEKKLKEGDGISFEGFPEWRTKPETVRLHFEVLAKVDGDKVIPERVMQVSPVAMEDSVALNVLTNNGTMSKMPIVQPPPIPFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3F2</accession>
    <name>A0A392N3F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ARM repeat protein interacting WITH ABF2 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0015308</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027117">
        <property type="protein sequence ID" value="MCH94350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044282">
        <property type="entry name" value="ABAP1/ARIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46710">
        <property type="entry name" value="ARM REPEAT PROTEIN INTERACTING WITH ABF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46710:SF12">
        <property type="entry name" value="ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="36"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="77"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11760" checksum="76DD8557392A39BC" modified="2018-12-05" version="1" fragment="single">MFLLIAPAALKVRGKQRCYLDSSQQLIQTVHIVQRGAVRPLIEMLSSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N463</accession>
    <name>A0A392N463_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">C2H2-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015321</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027148">
        <property type="protein sequence ID" value="MCH94363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N463"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35497">
        <property type="entry name" value="ACYL-UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35497:SF1">
        <property type="entry name" value="ACYL-UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2H2-type" evidence="1">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="270" mass="31292" checksum="9EB7F8F0C5DA76D8" modified="2018-12-05" version="1" fragment="single">MDIDSPETLLKCLKIRRHYYIEVRDHPASRYFKLYHCMLCDEAILDAKSLVDHLKSDAHKKNLNFAKLTLLKRNINRWPFNDGVLLFDSSIKEEDMSYLEKKQEFKNDSQGFKILQDCLKSIDNDDDLAIERFEYDPEIVNPRVKAYSGRFLIQAHGDTLKIGKSQIFGRYDSNRGIEKIWCEWIGKDDNDRTSNEVKDDDNLLIRVVIMRFRLGMANRFCGICNREKLVGRDVASLLEAPGSSFGKIVEDVTGIYNLFCPDCNSTDVND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N470</accession>
    <name>A0A392N470_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Leucine-rich repeat receptor protein kinase EXS-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0015483</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027524">
        <property type="protein sequence ID" value="MCH94521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046956">
        <property type="entry name" value="RLP23-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063:SF112">
        <property type="entry name" value="RECEPTOR LIKE PROTEIN 30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="248"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH94521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="34732" checksum="18B82A730F4E8300" modified="2018-12-05" version="1">MSGTIPSWIGDIFSIMQIIRLSQNKFQGNIPLQLCKLSALQVLDLSNNLLTGSIPQCIGNLTAMIHGKKPQVSIAPEETRHFEWYDQGVSQIIKGREDYFTRIGLKLLANVDLSNNNLSGPFPKGITRLTALRGLNLSHNHLSGEIPTTLGDMKLLESLDLSHDQFSGSIPSTMSSLTFLSHLSLSYNNLSGPIPQGNQFLTLNVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDRAEKLWFYFVVALGFVTGFWVFIGVLLLKKGWRLAYFKCIDEVVHKINVTLGRELARLKKRFMGNPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N535</accession>
    <name>A0A392N535_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methionine adenosyltransferase 2 subunit beta-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027929">
        <property type="protein sequence ID" value="MCH94693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N535"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43242">
        <property type="entry name" value="NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43242:SF1">
        <property type="entry name" value="NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RmlD-like substrate binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17138" checksum="9B08989A26B86457" modified="2018-12-05" version="1" fragment="single">PDVVVNCAAISVPRACEIDPASAHAINVPSSLVKWLQSFKQNSTLLIHLSTDQVYEGEKSFYKEEDIAIPLNVYGKTKVAAEKFISENCPNFAILRSSIIYGPQTLSPVPKSLPIQWIDGALSKRETLEFFHDEFRCPIYVKDLVTVILALTSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5B2</accession>
    <name>A0A392N5B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015727</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028082">
        <property type="protein sequence ID" value="MCH94762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5B2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14638" checksum="BAF93572046A2048" modified="2018-12-05" version="1">MGQPAIWNQALIDQNFMPSEGELIKQIPLIKEVVDDQIMWIYSLDGNHTMKTGYHPIGIRPEGPSNRDTPIKCLKQTWYPVQHYMSQMVLGPLSGAATWDTSGAMDPMTDSTTQRNYFGNIIQGIQALKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N634</accession>
    <name>A0A392N634_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029222">
        <property type="protein sequence ID" value="MCH95211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N634"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13470" checksum="584BCC6C2369D376" modified="2018-12-05" version="1">MGKMIKWKPTETKALENGVEKYWEFRCLQYKLYGMIKRDKYLGPILESRTIEAMATKNRKGVAEGYYTPLTAAEREQAEEREDRERERVPPIRVPAAAAEREKAQRVYEALKVIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6Y4</accession>
    <name>A0A392N6Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Copper transport protein ATOX1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0016536</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030123">
        <property type="protein sequence ID" value="MCH95557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.100:FF:000008">
        <property type="entry name" value="Copper transport protein ATOX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22814">
        <property type="entry name" value="COPPER TRANSPORT PROTEIN ATOX1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22814:SF315">
        <property type="entry name" value="OS02G0530100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="HMA, heavy metal-associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017188568" evidence="3">
        <location>
            <begin position="25"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="4">
        <location>
            <begin position="8"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH95557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13285" checksum="0E2C5FED81F0F4A8" modified="2018-12-05" version="1" fragment="single">MDVLLLYVLTVVLKVKMSCTGCSGAVNRVLEKMEGVESFDIDLKEQKVTVKGNVKPQEVFETVSKTGKKTEFWVEPVENKPVETEAEIDNKPSEVAAIASAESDNNKPLEDSNVVSVEPDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7R9</accession>
    <name>A0A392N7R9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029163">
        <property type="protein sequence ID" value="MCH95185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7R9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="16010" checksum="C43B60A204EA4EBC" modified="2018-12-05" version="1">MRVGLLADPKQLPPKSLSWEWRRVESLPVVARSVFIITNGSYKYFGGRYEHRGLYRHLYALHVDDGFERAGIPSCFRFFLCAFGSLRTPALMTVFDNASSRVDGGLEQEVFPCCLSFRLESGRAINDDLVPLFSPVYNVGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8T8</accession>
    <name>A0A392N8T8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein LURP-one-related 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016976</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LOR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031239">
        <property type="protein sequence ID" value="MCH95993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.200">
        <property type="entry name" value="LURP1-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007612">
        <property type="entry name" value="LOR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038595">
        <property type="entry name" value="LOR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025659">
        <property type="entry name" value="Tubby-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31087">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31087:SF60">
        <property type="entry name" value="PROTEIN LURP-ONE-RELATED 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04525">
        <property type="entry name" value="LOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54518">
        <property type="entry name" value="Tubby C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15817" checksum="DE9A431B304D6FFD" modified="2018-12-05" version="1" fragment="single">RPSLHQRWEGFKGERIDGDKPTFSVKRSMMIGRSRAGVTVEVYDNQREEYHIEGCFSQRCCTVFNAMKETMAEIYRKVDPTTGNLLGKEVFSLCVKPGFDAAFAMGFVLVLDHISGDDSINDDATTEPTVHPTVEDYEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9B0</accession>
    <name>A0A392N9B0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017393</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032250">
        <property type="protein sequence ID" value="MCH96407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="15" mass="1723" checksum="6275BC868C8282E2" modified="2018-12-05" version="1">MGAEECTEQIAVQWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAC2</accession>
    <name>A0A392NAC2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ubiquitin-fold modifier-conjugating enzyme 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017759</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ubiquitin-conjugating enzyme family. UFC1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033196">
        <property type="protein sequence ID" value="MCH96770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061657">
        <property type="term" value="F:UFM1 conjugating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990592">
        <property type="term" value="P:protein K69-linked ufmylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11686">
        <property type="entry name" value="UBCc_UFC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014806">
        <property type="entry name" value="Ufc1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12921">
        <property type="entry name" value="UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12921:SF0">
        <property type="entry name" value="UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08694">
        <property type="entry name" value="UFC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15167" checksum="8DE0C00F22067C5A" modified="2018-12-05" version="1" fragment="single">MEGWDPNTKSTLTQIPLLTTKAGPRDGAPWTARLKEEYKSLIAYTQMNKSNDNDWFRISASNPEGTRWTGKCWYVYNLLKYEFDLQFDIPVTYPSTAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE95</accession>
    <name>A0A392NE95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034805">
        <property type="protein sequence ID" value="MCH97378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19446">
        <property type="entry name" value="REVERSE TRANSCRIPTASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="132"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="294" mass="33113" checksum="26965BAA26E5D87C" modified="2018-12-05" version="1" fragment="single">VYASTDYLRNTAFFHRTAKIKQAYKKISAIRVNDLVLTDPDQIASHVVNHFQTLFSDNNNIFDNGLIEEVIHSIVTDNVNNLLTMMPSVAEIHNAVFSMNKNGAPGPDGFGAFFFQTYWEIIKGDVCNAVLEFFNTNWLMPSYNSNTVVLIPKTNDADTMGQFRPIAMANFKFKIISKILADRLAVILPDIISKEQRGFIKGRQIKDCVCLTSEAINMLHHKSFGGNLAIKIDIAKAFDTLDWQFLIKVLQAFGFNNIFCDWIHTILNSAKLSISINGKQEGYFDCARGVRQGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEX8</accession>
    <name>A0A392NEX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036771">
        <property type="protein sequence ID" value="MCH98121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13833">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13833:SF57">
        <property type="entry name" value="NHL REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017352952" evidence="1">
        <location>
            <begin position="22"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12443" checksum="5D12ACEB97546B36" modified="2018-12-05" version="1" fragment="single">MGKQFLLLALIFHLLFATLSAAPSNTSPAKIVSGFLSNAVPAFTKWVWSLKATTKTGVLSKSMMKFESGYNVETVFDGSKLGIEPYAVEVLHNGELLILDSANSNLYRISSSLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFR9</accession>
    <name>A0A392NFR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">MLO-like protein 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0019038</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MLO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036543">
        <property type="protein sequence ID" value="MCH98039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004326">
        <property type="entry name" value="Mlo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31942">
        <property type="entry name" value="MLO-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31942:SF9">
        <property type="entry name" value="MLO-LIKE PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03094">
        <property type="entry name" value="Mlo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0568">Pathogenesis-related protein</keyword>
    <keyword evidence="4" id="KW-0611">Plant defense</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017299875" evidence="9">
        <location>
            <begin position="17"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH98039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14855" checksum="AB92D732997D219B" modified="2018-12-05" version="1" fragment="single">MLLGLISLLLAQSARWISEICISSSVFSSQFYTCAEEDLPMIENFIIKNSSSFSDENNIPKGLITGALHQCGEGHEPFVSYEGLEQLHRFLFVLGITHVLYSFLAVGLAMSKIYSWCRWENQATMAAIDGNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG64</accession>
    <name>A0A392NG64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine-protein kinase BLUS1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038695">
        <property type="protein sequence ID" value="MCH98856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043539">
        <property type="term" value="F:protein serine/threonine kinase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047173">
        <property type="entry name" value="STRAD_A/B-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48014">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE FRAY2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48014:SF21">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE FRAY2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20579" checksum="9932079567052AD9" modified="2018-12-05" version="1" fragment="single">MSLIDHRNVVKSYCSFVVDRKLWVIMPFMAQGSCLHLMKTAYPDGFEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDSNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH34</accession>
    <name>A0A392NH34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor bHLH84-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020187</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039588">
        <property type="protein sequence ID" value="MCH99176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20446" checksum="A3976D207CDD34A2" modified="2018-12-05" version="1" fragment="single">METAQLISEEWESLSGQYTAEEADFMTQFLGGTYSCDLATNIDSLFFGLGDAKLSSQYFDDNLSKQINYESIDHEGSGLELVRPVLAADLENTAKRFRSSIEVSKNMRNVRKCPNSAFVSNNEEGLMWHGSKNCFSQVDSSNASIEQNRGTSPSLSPIEPKAPNLYRKSKATSSLATDAQSIYAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHH0</accession>
    <name>A0A392NHH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038204">
        <property type="protein sequence ID" value="MCH98659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8387" checksum="7404BB394FA8058A" modified="2018-12-05" version="1" fragment="single">EENETNEVTNEVEDSTSEDSQQDDNIVNENEQVDDSDEENEDTEARQVLNKILTLMMKLLNIKCGEKQWIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI54</accession>
    <name>A0A392NI54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039499">
        <property type="protein sequence ID" value="MCH99141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6593" checksum="74ECC8D317EF780C" modified="2018-12-05" version="1">MEIRIERSNQQLGFVIVSEENDSERDDGNEIHDPGANKNKIDFQRFIVMMRIRDSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJD8</accession>
    <name>A0A392NJD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041779">
        <property type="protein sequence ID" value="MCH99940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057135">
        <property type="entry name" value="At4g27190-like_LRR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23247">
        <property type="entry name" value="LRR_RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Disease resistance protein At4g27190-like leucine-rich repeats" evidence="1">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10232" checksum="9E38936018E180BA" modified="2018-12-05" version="1" fragment="single">MKSLFSVAMIRMLPKLSTLEMSEVTQLEEVFKGGNTITNDVAIGLVNLSKIELQKLPSFADICKGFKLQTPKIKHLDIVECPSISPSLREIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPF5</accession>
    <name>A0A392NPF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">B3 DNA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0022720</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046838">
        <property type="protein sequence ID" value="MCI01693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI01693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14942" checksum="CDDB85C59B372749" modified="2018-12-05" version="1">MDSEKDGNQNCCHKSDDKFDEIDRVDFPKFDVNVTDAMANSSQVLHFPNRVSKYVLLENQQQIKLRDVETGRIIRCPIATSTRYKYERYISEGWNDYKLEKMLNAGDVLRCTIEDPPTYMNIEVIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQR4</accession>
    <name>A0A392NQR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transducin/WD40 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048453">
        <property type="protein sequence ID" value="MCI02217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053290">
        <property type="entry name" value="TSET_complex_member"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45521:SF2">
        <property type="entry name" value="TRANSDUCIN_WD40 REPEAT-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45521">
        <property type="entry name" value="TSET COMPLEX MEMBER TSTF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6225" checksum="7CF921CAAD623285" modified="2018-12-05" version="1" fragment="single">MEFLYRSGVGDGPLVAFGASDGVIRVLSMITWKLARRYTGGHKGTISCLRSFMAASGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTJ3</accession>
    <name>A0A392NTJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0023786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050066">
        <property type="protein sequence ID" value="MCI02752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI02752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17958" checksum="9127D5F74D981197" modified="2018-12-05" version="1" fragment="single">DILCRFGIPQAVVTDNGTQFMDRKFQEFLAAINTKQHFTFVEHPQTNGQTEAANMVILRGLKRRLDENKKKWVDELQNMLWAYRTTPHSTTGETPFRLVYGTEVVIPVEIGEPSRRTEQPLEEEMNDEAPREKLDLVEEIRTWASIREATLKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUQ0</accession>
    <name>A0A392NUQ0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052556">
        <property type="protein sequence ID" value="MCI03553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="29174" checksum="0CAEB924E6807BCF" modified="2018-12-05" version="1">MTDLGKMKYFLGIEVTQSNEGIFICQQKYAAEILSRFGMDNCNKVCSPIVPGCKLAKNENGKASGARLYKQMVGSLMYLLATRPDLAYSVCVVARFMERPIEMHVAAVNRILRYLKGTIGCGILYKRVSVSNLQLIGWSDSDYAGDIDDRKSTSAEYVAAASCACQCIWLRNILKHLNVIQSGCTVIKCDNSSSIKLSKNPIMHGRCKHIDVRFHFLRDLTKDGIVELVHCNTQDQLVDLMTKPLKLESFCKLKDSLGMIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVB5</accession>
    <name>A0A392NVB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024812</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053222">
        <property type="protein sequence ID" value="MCI03771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4789" checksum="CAA546042EB85265" modified="2018-12-05" version="1" fragment="single">HSTTTLGSVDGMRKKRHCSDEXTTLGSVDGMRKNDTVPTKVESGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXG7</accession>
    <name>A0A392NXG7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0025554</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055615">
        <property type="protein sequence ID" value="MCI04507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="7"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="197"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="261"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="276"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="297" mass="33344" checksum="E27D60AA65B3C2A5" modified="2018-12-05" version="1" fragment="single">MPIEDEPYSFTTMVRGRALGFDRDAINEYLGNPYQLQGDDGLCPYGHALARGNWNVQAMTKKLLMPGCTFRCNRANQPLKVMRDDMKVKVQLVLLFIYYNLLPRSHFSDAPMNIAGLLYMVTAGTDVDIARVISNEMKAIACSGVIDFSRPKCPLAYPALIMELIKKERIPIPPLVHEHLGVIDDRHVVRHCKAKQPEQQQLEQEQQAPPHPAGPSIDPTLQTWFYHTWDQNAANYRAMTALHESMYQLHLQGPVMNPPDFHAHNNWPRDRPQFGEGVGTSAGAGVGADGDDDDVDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXU6</accession>
    <name>A0A392NXU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024967</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053717">
        <property type="protein sequence ID" value="MCI03926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7338" checksum="5513ED42B86DA38B" modified="2018-12-05" version="1">MKWRRSGNFCRKKCILLHENTKVGYTGWSGRDLLHSAPPLSWLERPLLLATPLPAFSSRWSGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYP0</accession>
    <name>A0A392NYP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-D-xylose:L-fucose alpha-13-D-xylosyltransferase MGP4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0025639</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055886">
        <property type="protein sequence ID" value="MCI04592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035252">
        <property type="term" value="F:UDP-xylosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010306">
        <property type="term" value="P:rhamnogalacturonan II biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005069">
        <property type="entry name" value="Nucl-diP-sugar_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052636">
        <property type="entry name" value="UDP-D-xylose:L-fucose_XylT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47032">
        <property type="entry name" value="UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47032:SF1">
        <property type="entry name" value="UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03407">
        <property type="entry name" value="Nucleotid_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Nucleotide-diphospho-sugar transferase" evidence="2">
        <location>
            <begin position="25"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9002" checksum="C8C13629FCBDC485" modified="2018-12-05" version="1" fragment="single">MLLGNVTHFVIPGSFSFFELIFAVGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLADPFPYLQGDHDVYFTDDMTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZA6</accession>
    <name>A0A392NZA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024896</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053488">
        <property type="protein sequence ID" value="MCI03855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3116" checksum="8BB8409E7ED32D26" modified="2018-12-05" version="1" fragment="single">MPRLFLDQDLLFLLVACLDRLASCYEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8L6</accession>
    <name>A0A392P8L6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">CASP-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0017385</name>
        <name evidence="10" type="ORF">A2U01_0029160</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">10/8</strain>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Homodimer and heterodimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the Casparian strip membrane proteins (CASP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032236">
        <property type="protein sequence ID" value="MCH96399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010067706">
        <property type="protein sequence ID" value="MCI08087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8L6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006459">
        <property type="entry name" value="CASP/CASPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006702">
        <property type="entry name" value="CASP_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01569">
        <property type="entry name" value="A_tha_TIGR01569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04535">
        <property type="entry name" value="CASP_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="Casparian strip membrane protein" evidence="8">
        <location>
            <begin position="2"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH96399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI08087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8322" checksum="BEF63A8F0837079E" modified="2018-12-05" version="1">MALASAGDGAATFMSELGRNGNSHARWDKICDKFESYCNRGGGALIASFIGFILLLIITVMSIAKLLKPNRINHAPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEM9</accession>
    <name>A0A392PEM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0031346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075516">
        <property type="protein sequence ID" value="MCI10254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="1991" checksum="FA1DFA21B06FC465" modified="2018-12-05" version="1" fragment="single">GSQSSGIPVEQSGCSPLWDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGK4</accession>
    <name>A0A392PGK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Xylosyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0031106</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074717">
        <property type="protein sequence ID" value="MCI10015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015020">
        <property type="term" value="F:glucuronosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044610">
        <property type="entry name" value="GLCAT14A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719:SF3">
        <property type="entry name" value="BETA-GLUCURONOSYLTRANSFERASE GLCAT14A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI10015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16331" checksum="C2F3D4CABC6A7A5E" modified="2018-12-05" version="1" fragment="single">SYSVFVESKLHPLPISTLPPPPRLAYLISGSAGDGGSVKRVLLAMYHPHNRYVVHLDLESSPKERSDLFEFVKNHELFKRFENVKMITKANLITYRGPTMVANTLHAAAILLKECGDWDWFINLSASDYPLVTQDVSVSCRSTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHF5</accession>
    <name>A0A392PHF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031418</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075791">
        <property type="protein sequence ID" value="MCI10325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3610" checksum="F92B50B8B9F8278E" modified="2018-12-05" version="1" fragment="single">VARGPDYNTIMMVNSPDDGKGSRIYLNMYALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKW4</accession>
    <name>A0A392PKW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0033527</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084118">
        <property type="protein sequence ID" value="MCI12422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4190" checksum="C57B42C2D737DF6F" modified="2018-12-05" version="1" fragment="single">VTEEKKMAHDVNITRVGRPPENVLHARSCMNPEECTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUE1</accession>
    <name>A0A392PUE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0036205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094907">
        <property type="protein sequence ID" value="MCI15070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="18631" checksum="BB2B3E25FB891434" modified="2018-12-05" version="1">MWNCKSSIFLPSFSELRNPALRCEKAESSGAKIVNPPPFAVMSCEFMLVMISVVFRRRVRMVNVFAFLRIFVMSSGVESVSGEVGSVGTNGFDDVGDDAFGAGACFGDAAGAVAVAAMLGEYNEENMSRKSEKENIICFMFGLVIGDYDYEGINVSAWNFLLICVLDLLIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3E6</accession>
    <name>A0A392Q3E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin-conjugating enzyme E2 27-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0039247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108492">
        <property type="protein sequence ID" value="MCI18096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015940">
        <property type="entry name" value="UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00627">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50030">
        <property type="entry name" value="UBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UBA" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3625" checksum="2A205AE76E2C3D76" modified="2018-12-05" version="1" fragment="single">VQKLVEMGFPEAQVRSILEAVGGDENLALERLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6E1</accession>
    <name>A0A392R6E1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0053021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190269">
        <property type="protein sequence ID" value="MCI31809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6E1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4540" checksum="A49EE25DB8EBF5CA" modified="2018-12-05" version="1" fragment="single">MPLRQNFGDKLIKTPKKGDRPKLRKRGRRANLWNQGHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USZ4</accession>
    <name>A0A392USZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100367</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010965899">
        <property type="protein sequence ID" value="MCI79096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4696" checksum="7F0F7D8A627F1DA7" modified="2018-12-05" version="1" fragment="single">MSASDLNELKKQLEELLEKRFARPSVSPWGAPVLLVKKKDGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTT4</accession>
    <name>A0A392UTT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dihydrodipicolinate reductase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955412">
        <property type="protein sequence ID" value="MCI78633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023940">
        <property type="entry name" value="DHDPR_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836:SF0">
        <property type="entry name" value="4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836">
        <property type="entry name" value="DIHYDRODIPICOLINATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8021" checksum="35DEEDEF340E7BA5" modified="2018-12-05" version="1" fragment="single">KMGKAVINAAEAAGLNVVPMSFGCEEESEQTFEVCGREFLVHGPSDRESFLESVRDKYPNLIIVDYTVPDAVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUJ3</accession>
    <name>A0A392UUJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099930</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955859">
        <property type="protein sequence ID" value="MCI78659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4302" checksum="198A6DC7739E1D86" modified="2018-12-05" version="1" fragment="single">MHETKPDEAFAMLIKARGSSSSTASDSYVGAKVKLDVLIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW85</accession>
    <name>A0A392UW85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967253">
        <property type="protein sequence ID" value="MCI79151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4247" checksum="3B90BAEF026A1E6A" modified="2018-12-05" version="1" fragment="single">MPVFAGSSLARYGSRKGKQTPSISTRSLLAAGGEMLFLPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWE6</accession>
    <name>A0A392UWE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010964720">
        <property type="protein sequence ID" value="MCI79035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7892" checksum="CCFCF53D5B193B27" modified="2018-12-05" version="1" fragment="single">PSGPSRTTPAPLPLRLDAPSTDSVHGCRLVSSGGDDNSSMKSAKTCDFMIPLGKNVMSYSDNSTAHVTIRRARSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX25</accession>
    <name>A0A392UX25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100001</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010957586">
        <property type="protein sequence ID" value="MCI78730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5006" checksum="340B1BEC57771B12" modified="2018-12-05" version="1" fragment="single">GFNTPVRCVLITSAGTANAEMLVNFSTEFLSAACTLQGIELKLVKMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWC2</accession>
    <name>A0A392LWC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Polynucleotidyl transferase Ribonuclease H fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0000012</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000007">
        <property type="protein sequence ID" value="MCH79266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="3">
        <location>
            <begin position="24"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="88"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="4">
        <location>
            <begin position="401"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="5">
        <location>
            <begin position="573"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="666"/>
            <end position="695"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="666"/>
            <end position="690"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="813"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH79266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="813" mass="90549" checksum="004ED9696A5CCB2F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWD6</accession>
    <name>A0A392LWD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">50S ribosomal protein L12 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0000023</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000013">
        <property type="protein sequence ID" value="MCH79277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1390.10:FF:000001">
        <property type="entry name" value="50S ribosomal protein L7/L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_bL12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_bL12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_bL12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_bL12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_bL12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00855">
        <property type="entry name" value="L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="39S RIBOSOMAL PROTEIN L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987:SF26">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN BL12CX-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="ClpS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="Ribosomal protein L7/12, oligomerisation (N-terminal) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein bL12 C-terminal" evidence="7">
        <location>
            <begin position="46"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH79277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="11852" checksum="4FCBECFFD923148A" modified="2018-12-05" version="1">MILALGARVHYLQDKLGVTAVSFAPAAAVAAPAAAEVAVVEEKTEFDVVIEEVPSNARIAAIKAVRALTNLGLKEAKELIEGLPKKFKEAVSKDEADDAKKQLETAGAKVTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LWX7</accession>
    <name>A0A392LWX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000109">
        <property type="protein sequence ID" value="MCH79436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LWX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34364">
        <property type="entry name" value="WAS/WASL-INTERACTING FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34364:SF1">
        <property type="entry name" value="WAS_WASL-INTERACTING FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="25125" checksum="DDBE163EFF18FC96" modified="2018-12-05" version="1">MSDSDSPKLYSQKPKKAQLKQFRGQPKSKDFSSPPVMGTQTAPSPPPPPQPKEPFIRRYKFLWPMLLAVNLGLGAKTVTAKTLEPNIVTAVNCTIVQQLSHVPRIWKAMWNPNPTRLRWRDGYAKTNTKKTGAEEEEKDATPISVKDTTTAPVTEASVSLPPTANPVIKREPIPENQQRELFKWILEEKRKIKPKDAEEKRRIDEEKALLKNLIKSKSIPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX37</accession>
    <name>A0A392LX37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000184</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000108">
        <property type="protein sequence ID" value="MCH79435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16215" checksum="BED3410D1E91CFBA" modified="2018-12-05" version="1">MSVLINGSPSEEINIQRGLKQGDPLAPFLFLLVDEGLGGLMKKAVEFNRFRGFQVGNGGVTMSHLHYADDTLCIGDASVMNLWSLKAILRGFEMTSGLKINFWKSNLMGINVSADFMRLASTFVNCRVGQIPFKYLGLPVSANPRRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXW8</accession>
    <name>A0A392LXW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Vacuolar protein sorting-associated protein 26A-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000524</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the VPS26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000353">
        <property type="protein sequence ID" value="MCH79768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.640:FF:000006">
        <property type="entry name" value="Vacuolar protein sorting-associated protein 26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.640">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014752">
        <property type="entry name" value="Arrestin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028934">
        <property type="entry name" value="Vps26-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12233">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING 26 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03643">
        <property type="entry name" value="Vps26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28885" checksum="F083E16CC309F51C" modified="2018-12-05" version="1">MQGKKIDHNGIKVELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTINRGYAGSIVEYQDFVVRNYSPLPPINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHXNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXX0</accession>
    <name>A0A392LXX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TMV resistance protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0000570</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000386">
        <property type="protein sequence ID" value="MCH79812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF560">
        <property type="entry name" value="RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="TIR" evidence="5">
        <location>
            <begin position="12"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="906"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH79812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="906" mass="102940" checksum="71F9F6FF7853DE8F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYF2</accession>
    <name>A0A392LYF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">60S ribosomal protein L11-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0000742</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000556">
        <property type="protein sequence ID" value="MCH79980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1440.10:FF:000002">
        <property type="entry name" value="60S ribosomal protein L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_uL5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_uL5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020929">
        <property type="entry name" value="Ribosomal_uL5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057266">
        <property type="entry name" value="Ribosomal_uL5_euk/arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_uL5_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003258">
        <property type="entry name" value="PRK04219.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00358">
        <property type="entry name" value="RIBOSOMAL_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL5 N-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Large ribosomal subunit protein uL5 C-terminal" evidence="6">
        <location>
            <begin position="56"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH79980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="17047" checksum="42B504B04F1700D7" modified="2018-12-05" version="1" fragment="single">MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZD7</accession>
    <name>A0A392LZD7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001128</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000972">
        <property type="protein sequence ID" value="MCH80361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="814"/>
            <end position="835"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="505"/>
            <end position="783"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="957" mass="108760" checksum="F52D28BA936C708E" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZV7</accession>
    <name>A0A392LZV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000413">
        <property type="protein sequence ID" value="MCH79844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8633" checksum="05D2D0F29AE2B343" modified="2018-12-05" version="1">MVKVNIDANLGVEGIWGLGAIVRDGNGRILAAAAATWKIHGMEDGALALYNAMLLAAXXFFFRACVLSHTGRKFEYTRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M072</accession>
    <name>A0A392M072_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000726</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000538">
        <property type="protein sequence ID" value="MCH79964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M072"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="167"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="555"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="62"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="602"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="602" mass="68032" checksum="7393872EAFCE8678" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M094</accession>
    <name>A0A392M094_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001370">
        <property type="protein sequence ID" value="MCH80700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M094"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12505" checksum="6E23D4C3AC4BC67A" modified="2018-12-05" version="1" fragment="single">MEDDSWRWVPNPDGVFSVKSSYDLLVLAMDLRWIGVVIVIPPSLFSLFEVLRGMARNKKIDFRLPLVCFMSGIGTREIVSCANPPGLLCDSCTVLCSLIFWFFCLGTAVLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M224</accession>
    <name>A0A392M224_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell wall protein AWA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002191">
        <property type="protein sequence ID" value="MCH81350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M224"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005635">
        <property type="term" value="C:nuclear envelope"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071763">
        <property type="term" value="P:nuclear membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016973">
        <property type="term" value="P:poly(A)+ mRNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33416">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33416:SF20">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="310"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="399"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="478"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="325"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="402"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="478"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="498"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="521"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="569"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="590" mass="62431" checksum="51B9581A53028EDA" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2R9</accession>
    <name>A0A392M2R9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative serine/threonine-kinase GCN2-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0002308</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002398">
        <property type="protein sequence ID" value="MCH81519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2R9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004694">
        <property type="term" value="F:eukaryotic translation initiation factor 2alpha kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050339">
        <property type="entry name" value="CC_SR_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042:SF136">
        <property type="entry name" value="EIF-2-ALPHA KINASE GCN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11042">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH81519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20297" checksum="A2C71F57F66E5D1D" modified="2018-12-05" version="1" fragment="single">MTVFLGQLDFMAWFETGVTDSYGDSGGDSWTPASSTFSYNIASSNDVVGRENQLESTYLYIQMEYCPMTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHLADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2V8</accession>
    <name>A0A392M2V8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002463</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002618">
        <property type="protein sequence ID" value="MCH81672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121:SF21">
        <property type="entry name" value="ANKYRIN REPEAT FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121">
        <property type="entry name" value="NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15704" checksum="CDCB313880DC7134" modified="2018-12-05" version="1">MQDDQGYTPLALVAEMTGNTNIAKCMIEKKGGQDLLSMKTNDGEIPVLLAAAKGHKEMTSYLYTEMDNMANENHHNRVLLLTRCITAEIFGRCGFEFTPTLXRTCLLPTSRKQHQMPYNHYTHWHACHLCSKVASDMDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2Y8</accession>
    <name>A0A392M2Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002187">
        <property type="protein sequence ID" value="MCH81348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2Y8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF143">
        <property type="entry name" value="PROTEIN SORTING-ASSOCIATED PROTEIN, PUTATIVE (DUF1162)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="331" mass="37444" checksum="FE49FC0AD808C0FB" modified="2018-12-05" version="1" fragment="single">PNVDNNVLDFVDHSCHLQVNFSSNRDMGTSVKGMLQQLQVTFDADILLNLLEFYGFVTSVKSYNKRVLLSLNGIENNTTRLLSKAEYVGVNHERVMWDVSVFDISVIFPWRNTASEWSNMVIKSRSLCFKSKTGPESFLSEVGDQPYFLKNFSNTISTSKDCLGVRLQDLYNYFDVQLNDFKITIVNSDQSQKISILEKFCASFFMAFCLIPDESILKQLEVYVHMESLKVHFSPSIYGAFIELSTHLDSLLLRDESETLNCVYPPNIVSDASSYSTFGISVISRLGSVDLEVDLENRGDNSSVLMVSLQEIDVRYVHKCPSSICVGLFPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3J8</accession>
    <name>A0A392M3J8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002884">
        <property type="protein sequence ID" value="MCH81866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3J8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="338"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="245"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="358"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="560" mass="61973" checksum="D5FBADF72F6A8E1D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4B7</accession>
    <name>A0A392M4B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger CCCH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003406">
        <property type="protein sequence ID" value="MCH82247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1740.100">
        <property type="entry name" value="Set2, Rpb1 interacting domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038190">
        <property type="entry name" value="SRI_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052650">
        <property type="entry name" value="Zinc_finger_CCCH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36886">
        <property type="entry name" value="PROTEIN FRIGIDA-ESSENTIAL 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36886:SF8">
        <property type="entry name" value="ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="126"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="223" mass="24635" checksum="508797CC49CF1FCE" modified="2018-12-05" version="1">MPVSITCINPDPAVGFPKQYGPVNDSIEQKNADASGVPPAIPPSKNIAEVEILSQLSNPGRQNCGDSIKGASSELVKSDNLIHLQPGQNTVVNKDNNEEVPKDRKNSEDGHKSTKENGPQNTDQNGRPDDAKQTKEMKGIRTFKFALAEFVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTATMQAANIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4M9</accession>
    <name>A0A392M4M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003381">
        <property type="protein sequence ID" value="MCH82229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4M9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="20648" checksum="BA6150467FD9CB88" modified="2018-12-05" version="1" fragment="single">VPTRVPTRLNLFEFSVHFPRVEPFWMMAEPKHLNPPSTPTSDTHWVIPEIRDTRSLYCKEGVKSAFCQVGNSEEWEVIPMGNDYTISDTRIDCIIPMYEVVFESMQVSLPFTKFEVELLNILRVAPSQIHPFGWALIKVYQFWCRYAKGKVPTWLFLNLFRVAHSVEDGRYGLISFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5E2</accession>
    <name>A0A392M5E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar sorting protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003812">
        <property type="protein sequence ID" value="MCH82531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045053">
        <property type="term" value="P:protein retention in Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006623">
        <property type="term" value="P:protein targeting to vacuole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026847">
        <property type="entry name" value="VPS13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166:SF137">
        <property type="entry name" value="PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16166">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17643" checksum="F412BE17542F76B9" modified="2018-12-05" version="1" fragment="single">IFNFGTKDGKPADTLSQKHSYILQPVTGKAKYSKLLSSEVADSKQPLQTAVVNLDDVTISLSKDGYRDMMKLADNFATFNQRLKYAHFRPLVPVKADSRSWWKYAYRAVSDQMKKARIMALKLSNSSSVGWLIQKELLGRKPILSSCDTLLSGPRTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6A2</accession>
    <name>A0A392M6A2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004351">
        <property type="protein sequence ID" value="MCH82896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6A2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5791" checksum="98AFF36951DB5B6B" modified="2018-12-05" version="1">MHLRKPVAPPLSGLCELPQVLPFPGFLIGARLTRRFTVVVLENVVERVVSHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6C8</accession>
    <name>A0A392M6C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Thioredoxin-like protein CITRX chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0002779</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the thioredoxin family. Plant CITRX-type subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003053">
        <property type="protein sequence ID" value="MCH81984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009579">
        <property type="term" value="C:thylakoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009657">
        <property type="term" value="P:plastid organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02947">
        <property type="entry name" value="TRX_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044182">
        <property type="entry name" value="CITRX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47834">
        <property type="entry name" value="THIOREDOXIN-LIKE PROTEIN CITRX, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47834:SF2">
        <property type="entry name" value="THIOREDOXIN-LIKE PROTEIN CITRX, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="9" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Thioredoxin" evidence="11">
        <location>
            <begin position="20"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH81984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5859" checksum="8806957FD1AB4E49" modified="2018-12-05" version="1" fragment="single">MHCSHSAVKDKKFSAQEIQELMKGERDVPLVIDFYATWCGPCILMAQEIEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6R9</accession>
    <name>A0A392M6R9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004697">
        <property type="protein sequence ID" value="MCH83130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="602"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="83"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="610"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="629" mass="69800" checksum="4C0E9526A5671524" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9D4</accession>
    <name>A0A392M9D4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004931</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006269">
        <property type="protein sequence ID" value="MCH84100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="157"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="365" mass="41122" checksum="DA649D81091BD87A" modified="2018-12-05" version="1" fragment="single">GGVVTGVISLTSKFPLSIGIIPAISAMASPSRSFDELEKRLDDRLTQLQLQRDADMDEIRQLLRAQAEQSSQDSNGRHGSGVPRTGNQNIYSTRISKVEFPRFDGKNVRDWLYKCDQFFLLDETPATSMVRLASIHLDGXCDQFFLLDEIPATSMVRLASIHLDGLALQWHLNYMRQKFDIYPSWQQYVQDVTARFGDAYEDPLSSLLQIKHVGKIQDYVDKFELALTQASLIPEHSLSIFLAGLDHNTQMHVRMFNPTSIAHAANLAKLHESSKAAKGLCMFCDELFTPGHQFKHKRSHLMLMELDEDDSTLPAETSTQPYTEPEITNPFATPQLSLQALTGVPAYQTMRVTGMHNKKNTPHFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9L0</accession>
    <name>A0A392M9L0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Embryo-specific 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005910">
        <property type="protein sequence ID" value="MCH83889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9L0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010417">
        <property type="entry name" value="Embryo-specific_ATS3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036392">
        <property type="entry name" value="PLAT/LH2_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06232">
        <property type="entry name" value="ATS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49723">
        <property type="entry name" value="Lipase/lipooxygenase domain (PLAT/LH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9136" checksum="BA23806852515EFA" modified="2018-12-05" version="1" fragment="single">VLAQLVAGNFEFDRCMITPFTVLGSCLGKICKVYLARIGSDGWKPETIIAYHNAYPPTTFNFNYFIPEGRRSGFDYCITKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB09</accession>
    <name>A0A392MB09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tesmin/TSO1-like CXC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005303</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006863">
        <property type="protein sequence ID" value="MCH84471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11255" checksum="A9B66066B6C17F52" modified="2018-12-05" version="1">MADDCSSANQTDKTSPENSSSDGADVPKGRPMSPGTLALMCDEQDTMFMNAAPSIGSMAHACNTSSQLPYGQGATEIYAEQERIVLTKFRDFLNRVITMGEINGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB62</accession>
    <name>A0A392MB62_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Secreted protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007318">
        <property type="protein sequence ID" value="MCH84750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017321183" description="Secreted protein" evidence="1">
        <location>
            <begin position="19"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="58" mass="6444" checksum="30FE4D3212EC0B98" modified="2018-12-05" version="1" fragment="single">MFSEFVLLLFELWYLVVAAFALQSDDGSLLSKFGFNIRLSLACGAQRSPPCRCLVVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBU0</accession>
    <name>A0A392MBU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RMD5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007730">
        <property type="protein sequence ID" value="MCH84987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034657">
        <property type="term" value="C:GID complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043161">
        <property type="term" value="P:proteasome-mediated ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013144">
        <property type="entry name" value="CRA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024964">
        <property type="entry name" value="CTLH/CRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006595">
        <property type="entry name" value="CTLH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045098">
        <property type="entry name" value="Fyv10_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006594">
        <property type="entry name" value="LisH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12170">
        <property type="entry name" value="MACROPHAGE ERYTHROBLAST ATTACHER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12170:SF11">
        <property type="entry name" value="PROTEIN RMD5 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10607">
        <property type="entry name" value="CTLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00757">
        <property type="entry name" value="CRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00668">
        <property type="entry name" value="CTLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50897">
        <property type="entry name" value="CTLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50896">
        <property type="entry name" value="LISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTLH" evidence="1">
        <location>
            <begin position="150"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="38322" checksum="577A76DFCF06BAAD" modified="2018-12-05" version="1" fragment="single">MELSSVKDAFDRVSKKQKLSSSKTQEMFDQIRQEIEGVLDKMQSANNTDQVLDYKTVLNELKDSLLKIAPLGQMESTQKELNVALSKYGKHLEKYFNPDISKAYRNIDFDIHTLNQIIANHFYRQGLFDVGDHFLSAVGEPESAAIMKSPFLEMYQILQAMQNHNLEPALNWAATNSDKLAQSGSDIVLKLHSMQFIKILQNGGSRDEALHYARTHISPFATSHIADVQKLMTCLLWPGKLEKSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTVAAGIQVLPALLKFMNVMAGKKQEWQSMNQLPVPIEMDKEFQFHSIFVCPVSKEQAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBU3</accession>
    <name>A0A392MBU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007735">
        <property type="protein sequence ID" value="MCH84990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006566">
        <property type="entry name" value="FBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF34">
        <property type="entry name" value="EMB|CAB62440.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08387">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00579">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="9"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="437" mass="50582" checksum="6738DD2384C942E6" modified="2018-12-05" version="1">MQTAAASTVDTISSLPDAILCHILSFVSTKEAVATSVLSKRWIHLWLHVLNLNFPYITNVDDFGSCLIFNQFVYSVLVAREASGYNVIDGFSLDIQYYDTYLAYGLGLPNITKWINLAVKRKLKYLRLHLHVRDLDYNDEGYAKLPVSIFTCRTLVSLDLRWFRVEGFTFTGFSSLPSLKVLRLECVKFSKVRDFVLFIAGCPILEDLEISGMDFALEEDSLTTLKEFKRLSLPKLTRADLVQFGCHCFPVNALSTAKYLCIHTLKVHRWYKVNQLQCPYDVVSIXXXXIVKFYVIQVNQMQRPYDDVSIFHNLTHLELFDRWDLVVQVLHQCPNLQNLKLYKGFRFSMWYEDGDDQENWVEPEFVPQCLLSSLRNFTIHHDFSDLQSELMLVQYILKNARILQTMTIRCTTEQPKMERTLSMCPVASATCQITLDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCD6</accession>
    <name>A0A392MCD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007263">
        <property type="protein sequence ID" value="MCH84719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42820:SF17">
        <property type="entry name" value="OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42820">
        <property type="entry name" value="SHORT-CHAIN DEHYDROGENASE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="9784" checksum="75C1499CE9B73DEE" modified="2018-12-05" version="1">MAEAPSTNTNLRLSGKIAIVTGGASGIGEATVRVFANEGVRVVVIADIQDELGNQVAASIGNQRCIYVHCDVADEDQVKNLIESTVNTYGQVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCH1</accession>
    <name>A0A392MCH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008074">
        <property type="protein sequence ID" value="MCH85202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9292" checksum="275682A996059A29" modified="2018-12-05" version="1">MDSSKENKKNQRXXPWLFSLCSKLSTDAVIGNDAPSLGHYLEAERKAATTYRRNQYPASYGSNGFSPIQDSNSLFVGSQVGHQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX0</accession>
    <name>A0A392MCX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcription factor bHLH93-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005983</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007967">
        <property type="protein sequence ID" value="MCH85141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04873">
        <property type="entry name" value="ACT_UUR-ACR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.280.10">
        <property type="entry name" value="Helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054502">
        <property type="entry name" value="bHLH-TF_ACT-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011598">
        <property type="entry name" value="bHLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036638">
        <property type="entry name" value="HLH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051358">
        <property type="entry name" value="TF_AMS/ICE1/BHLH6-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945:SF138">
        <property type="entry name" value="BHLH TRANSCRIPTIONAL FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31945">
        <property type="entry name" value="TRANSCRIPTION FACTOR SCREAM2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22754">
        <property type="entry name" value="bHLH-TF_ACT-like_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00010">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00353">
        <property type="entry name" value="HLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47459">
        <property type="entry name" value="HLH, helix-loop-helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50888">
        <property type="entry name" value="BHLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BHLH" evidence="6">
        <location>
            <begin position="54"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="93"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH85141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="25161" checksum="FA033D0A9780EF92" modified="2018-12-05" version="1">MGEEEDQSLLGEELQNLELQTTCKMEPTQSPEMPIVFNTGTSLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERGADTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD38</accession>
    <name>A0A392MD38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007857">
        <property type="protein sequence ID" value="MCH85073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10816" checksum="478DA9BBEDB7839E" modified="2018-12-05" version="1">MNEFAETHKREADSENKEEIAASKKLRVESSEENDSKEVSFLIEADAAEDKGLRHSMEDEWVVLLDAARDYPGNLSTDTDTGHDTDSDTDTSTPIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME58</accession>
    <name>A0A392ME58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006620</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009104">
        <property type="protein sequence ID" value="MCH85770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="15026" checksum="7F0BE42336EC2DB0" modified="2018-12-05" version="1">MFKDRTEYRYFLTLVNELQTYARDLPAMEWGFLGRLTRIKSRSLLDVAFARDVEEADGRNYRATSALSDEMACTQENMRMRDVKELERARVSLWNEMDEISARARRVERRFRALDVMWEDAHSFSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME89</accession>
    <name>A0A392ME89_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent DNA helicase</fullName>
            <ecNumber evidence="1">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005426</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010007069">
        <property type="protein sequence ID" value="MCH84594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010285">
        <property type="entry name" value="DNA_helicase_pif1-like_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10492:SF78">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05970">
        <property type="entry name" value="PIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 3" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA helicase Pif1-like DEAD-box helicase" evidence="2">
        <location>
            <begin position="53"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="381" mass="42682" checksum="FB474A7C710250DB" modified="2018-12-05" version="1">MLQANRRTLKDFKPIPFPKNFVTSQLGNQLILEELNYDKQQLHDEFIQLYSSLTDEQKSIFKKITSALKSKQGGVFFLNGYGGTGKTFMYRTLAAAIRSKGDIVLTVASSGIASLLLPGGRTAHSKFKIPVPTLDNSTCNINGDSDHAELLRQTKLIIWDEAPMCHRYTFECLDRSLKDLMTEKNNSPKLFGGKVVVFGGDFRQILPVIPRGRRSDIVHSAINASHIWDYCQVLTLTKNMRLQNKAAEANAQETHDFAKWILKVGEGKISEPNDGHADITIPDELLIPMSDNPIKSIVESTYPTLLQNYKDVNYLESRAILASTIETVDEINNYVLGLIPGEEREYLSSNSVDRTSKSCTQVENWNTNHVNEKLGSIGRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MED8</accession>
    <name>A0A392MED8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007146">
        <property type="protein sequence ID" value="MCH84644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MED8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11248" checksum="1A9A038D26767D0D" modified="2018-12-05" version="1">MREEPTLNGAQEECNKDINEEGYDSDIVIEGKKRKTHNSHLSRHVSRSEREERMMVDENYKVDANKDEFGHVTHDVELSQMRNFLSAGPGEQACREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MES6</accession>
    <name>A0A392MES6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase HT1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009122">
        <property type="protein sequence ID" value="MCH85781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MES6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5729" checksum="A7095C3E7CE05A32" modified="2018-12-05" version="1" fragment="single">YALDVNVERAEDVHMHKRLLHLAHDPANRPQIEIRLVQPMKHGYIHEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF03</accession>
    <name>A0A392MF03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Isoleucine-tRNA ligase cytoplasmic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009729">
        <property type="protein sequence ID" value="MCH86097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023586">
        <property type="entry name" value="Ile-tRNA-ligase_type2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780:SF1">
        <property type="entry name" value="ISOLEUCINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780">
        <property type="entry name" value="SOLEUCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19302">
        <property type="entry name" value="DUF5915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="27452" checksum="B1B9073C8B758C30" modified="2018-12-05" version="1">MGIVAKEVKAMSQEXILAFENAGEVVIANHSLKLSDIKVLRDFKRPDGMAENEIDAAGDGDVLVILDLRPDESLFEAGAVREIVNRIQKLRKKIALEPTDTVEVYFQSLDDDTLISQRVLHSQESYIRDAIGSSLLQFSLMPAHAVIIGEESFHGISSMSFAITLARPALMFNEKAILSLFAVPTGDSKFAQNLQTYLLSRDHSNLKSEFRDGNGKKIVDSIEQQPAAEVVLGEHVFLSVGDYHVAAKSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFZ6</accession>
    <name>A0A392MFZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phosphoglycerate mutase GpmB-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009974">
        <property type="protein sequence ID" value="MCH86231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001345">
        <property type="entry name" value="PG/BPGM_mutase_AS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00175">
        <property type="entry name" value="PG_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4562" checksum="C98FE41BAEECDC5F" modified="2018-12-05" version="1" fragment="single">MATHFSSNDSTDFSSPPHSDYAEIVVVRHGETAWNANNKIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG09</accession>
    <name>A0A392MG09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006537</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008955">
        <property type="protein sequence ID" value="MCH85688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023:SF4">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13714" checksum="D8601E04E06291C1" modified="2018-12-05" version="1" fragment="single">IFENPILPAKPCIHAPSEFRINPPNPETPGLPMLLPSTFKIIPLPSMAFQRTNLATIIYNTKELLARNRRIRIVHTLRECNVCADFLAKLGARHPEAYSPLVTPPDGMSLLLLADASETLFSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG33</accession>
    <name>A0A392MG33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histone H2A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006853</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009551">
        <property type="protein sequence ID" value="MCH85999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="13"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11679" checksum="E01723D21CEC8BDD" modified="2018-12-05" version="1">MEVFFNTDGVSKGGINTNCGGSNEDCGFSRGLGICSVYVAELWDVLKGLNLTRMRGFRKMELHIDSVVVVSSISNKKEDHSHAFREANGCVDALANMANGSGILFDFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG77</accession>
    <name>A0A392MG77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arginine biosynthesis protein ArgJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006939</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009705">
        <property type="protein sequence ID" value="MCH86085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:L-glutamate N-acetyltransferase activity, acting on acetyl-L-ornithine as donor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:L-arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006592">
        <property type="term" value="P:ornithine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.70.12">
        <property type="entry name" value="L-amino peptidase D-ALA esterase/amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100:SF0">
        <property type="entry name" value="ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="DmpA/ArgJ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11289" checksum="1BCC87C9239A9626" modified="2018-12-05" version="1" fragment="single">MTKGSGMMHPNMATMLGVITTDAGVTSDVWRKMVRVAVNRSFNQITVDGDTSTNDIVIALASGLSGLSSISSLDSDEAIQLQACLDAVMQGLAKXIAWDGEGATCLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH68</accession>
    <name>A0A392MH68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007702</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011041">
        <property type="protein sequence ID" value="MCH86842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121:SF15">
        <property type="entry name" value="ANKYRIN REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121">
        <property type="entry name" value="NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="2"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20574" checksum="68B84DBDB7E57FE0" modified="2018-12-05" version="1">MRGQWREVLEANEKNLEVLEAKITKAEDTVLHMAVYVNQIFFVTTLLDNISQNMCRDILRMQNSKRNTPLHVAAEFGNVDICNNIAKRDHTIVSFRNFEGETPLFVAAVHGKRDAFFCPTVKVWLKLTFACSVQVQFSSPNYERPSLSLLRTSYHLISMNVIIMMGKQQSKSSLTHMDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHD5</accession>
    <name>A0A392MHD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0007362</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010422">
        <property type="protein sequence ID" value="MCH86505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF26">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="5">
        <location>
            <begin position="50"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="4">
        <location>
            <begin position="266"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="164"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH86505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="411" mass="45631" checksum="8D0EE99AA5DEB971" modified="2018-12-05" version="1" fragment="single">MPLTFWDHSFTTAAHLLNYLPTASLHNFISPYQALYNQIPDYKSLRVFGCSCFPHLRPYNNHKLELRSTKCVYLGPSPQHKGYKCMTANGRVYISKDVVFNECEFPFSILCASAPCSSSTTSSPTYSSQIPQPLSLISEPLPSHSPPEHLSTNSIAEPLATASSTESINPHNHDVPSSSLITQPPVLPPTVSSLPLPSTLPIVSKASKVASHDSANKHPMVTRGKTGNLKPKVFLAHSEPGSVKQALADPQWLAAMKCEYSALMKNETWSLVPLPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIRIIXTLAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKNLVCKLHKALYGLKQAPRAWYERLTQALLHFGFHAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHW8</accession>
    <name>A0A392MHW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011172">
        <property type="protein sequence ID" value="MCH86911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="25580" checksum="C13293C6405B53D0" modified="2018-12-05" version="1">MSGFRPPHHPRPDLKGWWSFGASPGFRFGSTGNTTVAVVVVESLGFGSSPFWSHSGVAGGWVGWVCEVSSPLAHSSSGLGFSFQISLVLFGSYQHLWLAVFCRGQSPFLCSLCHRQSGYGAGFVTVDVWVFWAVFIRELMVGYVLRRSCAIYSVDCCAVLLISFGNDGVAYAVFFLNDGGLGSLWIHIAVVVVARILVHRWLWLWHYLVGFASVSSLTLSQLSFVSIRQFVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIN1</accession>
    <name>A0A392MIN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007426</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010540">
        <property type="protein sequence ID" value="MCH86568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF34">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="241"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="200"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="200"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="222"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="413" mass="47224" checksum="E4C6F2E8653931E4" modified="2018-12-05" version="1" fragment="single">MADNTHFQQPAIPKFDGFYEHWAMLMENLLRSKEYWSLIENGVTTAPANATAEQLRVANESKLRDLKVKNYLFQSIDRSILETILTSDSSKEIWDAMKRKYQGSTRVKRAQLQALRRDFEVLAMKDTETVDEYFARTLTIANRMTAYGERMEQVTIVEKILRSMPAKFNYVVCSIEESNDVTSLSIEELQSSLIVHEQRMKGQRESSEEQALKISNAGRGYGRGRGRGRGRGRQSKENIECYKCHKLGHYQSECPSWEDGANYAEFNDEEETLLMAKTDHGTEVREKAWYLDSGCSNHMVGNKEWLFDFDASFRDFVKLGNDAKMSVMGKGNVKLFINGKVHVVSNVYYLLGLNTNLLSIGQLQQKNVTIVFKNDTCKAYHDEKAQKEMVNGLPGLGNMDEKCSDCIIGKQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ57</accession>
    <name>A0A392MJ57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007954</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011500">
        <property type="protein sequence ID" value="MCH87089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF176">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="2">
        <location>
            <begin position="206"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="246"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="428"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="246"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="274"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="332"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="372"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="433"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="454" mass="50752" checksum="0C5A677A2F0958DE" modified="2018-12-05" version="1" fragment="single">MESFSIPWKCLDFTSKPKTSEKIEPPIQKQQKSFAQAVSNVCDIPLSQLPQACVKGDELAIAIPEKDYLAGTDACKHNLHGRVIWPKGATPLTVVALKNQLAPIWKDLGKWGVISLGKGYYEFCFSSLEDVRRFRSVASWSLNPEYWRPNILFAIASSIGTPICTDAATSKPLLERTFGQFARVLIDMDLSQIIRYKVLVERKGFAFFVEFDYENLPAFCSNCNIIGHSVENCKKLNSLGEVKQDYKPVERRQAPKENKKAYVQTNDGRAQGKSNEEPSNENKNDKVDDPVVIEVLSSGEKVNSAKAKSLDNNQNKEKSQSSTSHTPKGDKSXXXXXXXXXXXXXXXXXXNPPDGVSNKEFVDDSQLEDKGNSSTNEEVSSNLNITSKEQTMEFLNQSWANMVEQDESDLNLEDDELVPIKERSKSVPFTMVQAKSKSQKPKSNSAVNSYRTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLB1</accession>
    <name>A0A392MLB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Putative inactive leucine-rich repeat receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0008864</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013276">
        <property type="protein sequence ID" value="MCH87983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051716">
        <property type="entry name" value="Plant_RL_S/T_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053">
        <property type="entry name" value="LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053:SF71">
        <property type="entry name" value="LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH87983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="163" mass="18022" checksum="D841E3235482F518" modified="2018-12-05" version="1" fragment="single">GQFPRGFENCSSITSLDLSFNEFSGPIPADISSMLPFLTSFDLRNNKFTGEIPIALANCTYLNALKLDNNMLTGEIPKELGQLPRIRTISFSNNQLYGQVPMFYSIVKVNYANNRGLCGGSLRPCSSTRDXQDDFHQSFKGGLIVDLCTIGKTDINNMVRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLH5</accession>
    <name>A0A392MLH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0008924</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013393">
        <property type="protein sequence ID" value="MCH88043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH88043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="203" mass="23064" checksum="ECFF35A3326B7731" modified="2018-12-05" version="1" fragment="single">MIAINHWYDKLHSDVHSYAMMTRTCYMEYDPMNSRGIVPGIYARCIGPVIGNTVFFQDIILNQIQVVVERNKSEIYFTHGWSRLRDFYIGSGAWLTLLFINPFVFHMKIRDITGIEITYPVKTPPCRLLEKTLTAADVASGTLLDNNPRTSCDICKVHRLVDDVIVKFGVTEASDNRTVYFKLSPCLGVRTTLHAPSTAGNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLW7</accession>
    <name>A0A392MLW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Inosine-uridine preferring nucleoside hydrolase-related family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009379</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IUNH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014262">
        <property type="protein sequence ID" value="MCH88490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016799">
        <property type="term" value="F:hydrolase activity, hydrolyzing N-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.245.10">
        <property type="entry name" value="Ribonucleoside hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001910">
        <property type="entry name" value="Inosine/uridine_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036452">
        <property type="entry name" value="Ribo_hydro-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46692">
        <property type="entry name" value="INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46692:SF1">
        <property type="entry name" value="NUCLEOSIDE HYDROLASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01156">
        <property type="entry name" value="IU_nuc_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53590">
        <property type="entry name" value="Nucleoside hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Inosine/uridine-preferring nucleoside hydrolase" evidence="2">
        <location>
            <begin position="58"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15001" checksum="E4E70D2C97670FF7" modified="2018-12-05" version="1" fragment="single">MTTAGDCRYRQAIPVGFGGRLDVDTNLGIRKAFLPQGKRKYTPLRQPTAQQVLIEKISAEFNIFGDPFAAYQVIHSGIPVTLVPLDATNTIPISEEFFDEFEKNQDTYEAQYCFKSLKMTRDTWFDNNFYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMR9</accession>
    <name>A0A392MMR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Biotin carboxyl carrier protein of acetyl-CoA carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013808">
        <property type="protein sequence ID" value="MCH88249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3012" checksum="4A4257E0CE6AE8B0" modified="2018-12-05" version="1" fragment="single">ADQSGTIVEIVTEDAKPVSVGTPLFVIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMX2</accession>
    <name>A0A392MMX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009775</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015042">
        <property type="protein sequence ID" value="MCH88882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="28"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="153"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="293" mass="33668" checksum="63E6E2CE77CCE97A" modified="2018-12-05" version="1" fragment="single">RLSTMLVKEVSAKELLDFHGNKRMVNLISNSSQEAPRNNSPNTPLMNAERKRPRLKVSSSPPVQIFENRQPSSSEGRDEMWTSFVTKINGSGDGDATSIWDDQFPLGDLIDKHFIQEKFKEKVEELELERVLQTSLTDSVRSNFHLRVLAGKFRDMEKKNKTYVAEISELQKKLSENEKNYVGEVNELKKKMSEYGKNMAEMTSLKDELNKLKKSLEESNVEKSRLVGREKDLMEENSNIKTKLSIKEDAHKLIVEKLKAEIKELKGENERQYKAGYDKARSQVVIFTTGLKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPK8</accession>
    <name>A0A392MPK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016227">
        <property type="protein sequence ID" value="MCH89482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="26920" checksum="7A66784DB77F082E" modified="2018-12-05" version="1" fragment="single">MSEEVQMVHTIDQFDSREIERSKEYQKELIFPEGHVQVYNVKFKAFKQAGRLQGVDVVMCLKGLISSVPMNEVYEPTIENXGDTWXXKVQPNHARLVLDILAYGHNGHTVKGIHVSRRTIGYDVVGSGSLFPCNVEIIIRWRNPMLDLAKEKMMLLYSSVLRIAWDPRKFNVFMSEAAYEFCWRIFHGACIHIVAEPYDLAVNEVCWRMLSTFHRLLNFVFDRGKTRGMQID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPN0</accession>
    <name>A0A392MPN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ALBINO3-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010086</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the OXA1/ALB3/YidC (TC 2.A.9.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015668">
        <property type="protein sequence ID" value="MCH89193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032979">
        <property type="term" value="P:protein insertion into mitochondrial inner membrane from matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428:SF65">
        <property type="entry name" value="CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX18, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="OXA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18081" checksum="6E55F49D5F7D0502" modified="2018-12-05" version="1">MATTAALRSLLRRSRPSSLLYLPRALTSHSPPPLHSPFTPHSPSSTILDAFRTRAFSTXSSNDRDFDTDSFSLDSPANSEILKAVADSASAGGGEDIPAFPVRVVISMLDSFHDLTGFPWWLTIISSTLALRIVVLFPLVFTLHKLKRISQFAPKCEYHVLNMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPP8</accession>
    <name>A0A392MPP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dolichyl-phosphate beta-glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013797">
        <property type="protein sequence ID" value="MCH88244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006487">
        <property type="term" value="P:protein N-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10859:SF91">
        <property type="entry name" value="DOLICHYL-PHOSPHATE BETA-GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10859">
        <property type="entry name" value="GLYCOSYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6502" checksum="411D673FD149F018" modified="2018-12-05" version="1" fragment="single">VPCPHVVDPASKYISLIIPAFNEEHRLPGALEETMIYLQQRASKDPSFSYEVLAVPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPZ7</accession>
    <name>A0A392MPZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two-component response regulator-like APRR5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0010218</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015915">
        <property type="protein sequence ID" value="MCH89323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPZ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009736">
        <property type="term" value="P:cytokinin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045279">
        <property type="entry name" value="ARR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43874">
        <property type="entry name" value="TWO-COMPONENT RESPONSE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43874:SF220">
        <property type="entry name" value="TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="CheY-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="1"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="unsure residue" description="D or N" evidence="6">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH89323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25361" checksum="AC7BE07F845FAF28" modified="2018-12-05" version="1" fragment="single">METTGLSHRIELQNNFDLFFAVAAVADGLKAWEIMKGRPRNFDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQLTADAGINGPQDETDEQQKVEATAENNAAGYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQLKCADAYPSETKTQDVDIHLGQALITQDSRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQE9</accession>
    <name>A0A392MQE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010641</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016790">
        <property type="protein sequence ID" value="MCH89740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="261"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="229"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="270"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="305" mass="34030" checksum="576556F298ED0EC4" modified="2018-12-05" version="1" fragment="single">AVTKKAKDTSLKPVKYGPSRKRSKPTPPPEKKKTPLKRKSAPPSDSDYDVEKDAPSIKTPAKKAMTTKKSVQEVEEVPCDNVSFHRAAYAQRWNYVCKRRFTLERELGKDILECDEIVTLVKEAGLMKTVSGLSDCYEKLVREFLVNIPEDCDNHLSKEYQKVFVRGKCVEFSPTIINKALDNPDEPKPEMRIGAANWVPTRHSSDVATDIAGPSNKFASVPMTRKEIIAALETNCKELDEKKLQFERMIHALRLEEAAEEADNAVQGEDMAEDVDDGVAGDDDIGANSENEEDEAEETSDSTPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQW7</accession>
    <name>A0A392MQW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">U4/U6.U5 tri-snRNP-associated protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017141">
        <property type="protein sequence ID" value="MCH89897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050185">
        <property type="entry name" value="Ub_carboxyl-term_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21646:SF16">
        <property type="entry name" value="U4_U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21646">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="USP" evidence="1">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="14434" checksum="8DE065FD637158EE" modified="2018-12-05" version="1">MQYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENQKLRSKYDLIANIVHDGKPGEGSYRAFVQRKSEELWYEMQDLHVSETLPHLVALSETYMQIYEQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRJ3</accession>
    <name>A0A392MRJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017778">
        <property type="protein sequence ID" value="MCH90186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9738" checksum="8884D0C76A6BACE0" modified="2018-12-05" version="1" fragment="single">DSENMLAGYFGLCGWVRVFMVDAMLLDDRMRFLVSCGWKGGDFAKFWGGAGFMRENKRWRFREVQDGFNVWHHTQSAIVPASKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MT20</accession>
    <name>A0A392MT20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011327</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018248">
        <property type="protein sequence ID" value="MCH90412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MT20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="27"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="326" mass="35600" checksum="142EC3ED0567F61A" modified="2018-12-05" version="1" fragment="single">AKGAVRLTEFEPERRDGFVNRLNQETISYYFTNLPDDFKVVDLWAVFAKFGRVGEVYIPQERDKRGNRFGFVKFKEVKGVEALSKRLEDVWLGTYKIRTNLSRFGRINSKGEPVDKGSSSIDVVDADVALDFFANEAIFDRDAVGEGGDDGKGLSTDFPLYGVPLHAWGESTFRAVASRCGVFVDVDDVTRNRLRLDVARMKIETSICSCVDFSIKLVVQGASYMRSEAASSCASGGQAVARVVLEGLDEGDTDNEASIACQCDVPFGVQEVRESTAVKQDMGICGKKTVVDACDATVIPSIDAELIVTEETNVLGTPSHVRGSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTI2</accession>
    <name>A0A392MTI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mitochondrial-like Rho GTPase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011773</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019186">
        <property type="protein sequence ID" value="MCH90850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052266">
        <property type="entry name" value="Miro-EF-hand_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46819">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46819:SF1">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH90850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15535" checksum="0C2AB4E4B7DFB8A7" modified="2018-12-05" version="1">MFMWSDESSWKASCELLSKIVGHGEETGFEVPCLIVAAKEDQDSFTMAIQEATVVSQDMGVEAPMPNSVKLEDFNSIFRRIVTAAEHPHLSIPETEAGKTRKQFRRLIDQSLMFVSVGLGVAMAVRFGAAKKNGAARKNVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTN9</accession>
    <name>A0A392MTN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF630 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016560">
        <property type="protein sequence ID" value="MCH89634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006867">
        <property type="entry name" value="DUF632"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04782">
        <property type="entry name" value="DUF632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF632" evidence="1">
        <location>
            <begin position="7"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16612" checksum="C16F398CDBEB58EB" modified="2018-12-05" version="1" fragment="single">MFFVGKRSNSARVFSVLSWSRHTKSPTFSKDDAEFSSPSEPCRPGAHCATLKKLYAAEKKLYKAVKSKTPIDSVAELAAIVTLRIRFTVLTGCPRSVTSITTLRNQSRGINGCSSNIHIKNGFVGIHKLVTSVSRPPIKKEYVRQRFKGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTS2</accession>
    <name>A0A392MTS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">BAHD acyltransferase DCR-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011645</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the plant acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018919">
        <property type="protein sequence ID" value="MCH90723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.559.10:FF:000008">
        <property type="entry name" value="Tryptamine hydroxycinnamoyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="entry name" value="Chloramphenicol acetyltransferase-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051283">
        <property type="entry name" value="Sec_Metabolite_Acyltrans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31896:SF76">
        <property type="entry name" value="BAHD ACYLTRANSFERASE DCR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31896">
        <property type="entry name" value="FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02458">
        <property type="entry name" value="Transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="26"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="313" mass="34409" checksum="B0C0DB1D64FC249A" modified="2018-12-05" version="1">MGLAFNHAVVDGTSTWHFMTSWAEECSSAPPTTPRPFLERTKSRNTRVKLDLSLPEPKSPSANGEAKLEPEGPPPSANGEAKPEPEGPPPSANGGAKPVLREKIFKFSESAIDKIKSTVNQTLPLEGSKPFSTFQSLSAHIWRHVTLARDLKPEEYTVYTVFADCRKRVDPPMPEAYFGNLIQAIFTVTAAGLLSAHPPQFGASLIQKAIESHDANAIDGRNKEWESEPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGTPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUC1</accession>
    <name>A0A392MUC1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019625">
        <property type="protein sequence ID" value="MCH91071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240:SF15">
        <property type="entry name" value="GAG-PRO-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240">
        <property type="entry name" value="OS08G0508500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="449" mass="49655" checksum="16712CDB0F57EAB9" modified="2018-12-05" version="1" fragment="single">MKANTDRTKFCRYHKSHGHVTEDCVHLKDAIEILIQKGYARKYIQNDEQVQQQQQQRREPQEVAMAIDVPEQENNRGIVPQALTISVPEIPLPSPGSDEGALMRHFNAHLNGSWENFPKALVITGGGLNKITLGSVKRKFEELENVCSVTPITVSKPEGGSDPLAFYKSEVPGGSPNYQIPLLVRARMANFDVHRILVDQGSSCDVMYSGLFKTLQLSEKNLVPYVGPDLQGFNGSTTKPWGYVDLIVTFGEEKAMKYVRTQFMVVDCPSLYNCIIGRTTLAELFAVSSTVHLKMKYYTPDVQVATINGDIAAARRCFEAAAKNLSTVVTPKKTEKKNPGINTIGGSIDIDARLTKKEHHEEKQDLPDAEKKIYRPIPDGDFELVPLGEDPLKGIKIGTGLPDLVKKQLIACLKDNAELFAWSAAEMLGIDPEVACHQLTLDPRASAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUE5</accession>
    <name>A0A392MUE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxysterol-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the OSBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018769">
        <property type="protein sequence ID" value="MCH90645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.3490:FF:000007">
        <property type="entry name" value="Oxysterol-binding protein-related protein 4B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037239">
        <property type="entry name" value="OSBP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000648">
        <property type="entry name" value="Oxysterol-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01237">
        <property type="entry name" value="Oxysterol_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144000">
        <property type="entry name" value="Oxysterol-binding protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9818" checksum="DAEEEFA297CA00FE" modified="2018-12-05" version="1" fragment="single">SVWPTESLHVWGELSQAIMSKDWDKAREAKQAVEERQRKLMREGESKGKKWIPKHFEVSYSKEVGWDCSPIQNFVSAAPIIAFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUF8</accession>
    <name>A0A392MUF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box/FBD/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012036</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019713">
        <property type="protein sequence ID" value="MCH91111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16389" checksum="1243CF61CF84004D" modified="2018-12-05" version="1" fragment="single">DVPVELPTPCINLTSLFLGINFNDLKQISVALCLLKSSPKLRKFGMFVPLEEQTSLLTPASYCWEDLFSEPDMPLIVRNLWIEGISGTKSELDFIRFLLLYSPVLEKMIVKPIVNVKPELMIELIRFKRASAQAEVIYRVNDSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVB2</accession>
    <name>A0A392MVB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Callose synthase 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012407</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020510">
        <property type="protein sequence ID" value="MCH91480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000148">
        <property type="term" value="C:1,3-beta-D-glucan synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003843">
        <property type="term" value="F:1,3-beta-D-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006075">
        <property type="term" value="P:(1-&gt;3)-beta-D-glucan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003440">
        <property type="entry name" value="Glyco_trans_48_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741:SF16">
        <property type="entry name" value="CALLOSE SYNTHASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741">
        <property type="entry name" value="LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02364">
        <property type="entry name" value="Glucan_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycosyl transferase 48" evidence="1">
        <location>
            <begin position="3"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20877" checksum="AFA6C755FF00DED1" modified="2018-12-05" version="1" fragment="single">MVTHSALRVAYIDETEDTKGGEKVYYSVLVKGGEKYDQEIYRIKLPGPPTEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYYEEAFKMRNVLEEFHAHKGQRKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRIFHITRGGISKASKTINLSEDIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVB8</accession>
    <name>A0A392MVB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017909">
        <property type="protein sequence ID" value="MCH90244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="179"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="384" mass="44574" checksum="6AE54C851683F363" modified="2018-12-05" version="1" fragment="single">MARLGGIQRRLQSCVNRGGLKRLEKKLQGDLNNILKKEELMWYQRSRAKWLKDGDRNTRYYHLKTVNRRRRNNVIMLKNESGQWVDDVVQLQNLATDFYKKLFADNQINRQWHNTSVTYPMLDTLMMNKLAAPICVEEVKKAVFSMHPWKAPGPDGFPARFYQKSWEIVGETVYKFVENVWQNPSAISDVNKTDICLIPKIDKPEYVTQFRPISLCNTNYKIVSKVIVERLKECVASLISPYQTGFVPGRNIHENIVVAKEMAHTMHSMKGRKGAFAIKVDLSKAYDKLSWEFIWKVLTEIQFPETLINVIMHSITSVTTNVKWNGTRSEFFRPWPGIRQGDPISPYLFVLCMDKLSHIILQAVEEGKWKGIRAGRQGPMISHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWM7</accession>
    <name>A0A392MWM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">P-loop containing nucleoside triphosphate hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021513">
        <property type="protein sequence ID" value="MCH91946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044802">
        <property type="entry name" value="NADKc-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153">
        <property type="entry name" value="CALMODULIN CALCIUM-DEPENDENT NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153:SF1">
        <property type="entry name" value="CALMODULIN CALCIUM-DEPENDENT NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="203" mass="23124" checksum="DEA14901E3331B7E" modified="2018-12-05" version="1">MDCTLSWPFMEQTIDMARNVHKYKYKLGVGSKKAEDGTLNQNYWVQVNEDKDNSKGELHTKKPYRIELVGVVCDGYLAAVRGIRRAIMTGEAVTVNSQLKSHKRFANAFPKYCELVDNARLYCTNGVGVPPQVNKNVFLLFRLILHFTTSLNCEADSIRELHKEPSPVMGPGSVWNDFVLSPARSSVLKELRESFHKIERSMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX72</accession>
    <name>A0A392MX72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative titan9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013034</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021898">
        <property type="protein sequence ID" value="MCH92101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003006">
        <property type="term" value="P:developmental process involved in reproduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056708">
        <property type="entry name" value="DUF7806"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35489">
        <property type="entry name" value="TITAN9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35489:SF2">
        <property type="entry name" value="TITAN9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25091">
        <property type="entry name" value="DUF7806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7806" evidence="2">
        <location>
            <begin position="120"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17913" checksum="6357DAAEAE20EF5A" modified="2018-12-05" version="1" fragment="single">EALFEEVEKLHKLLKGGTSGDLNNQSKVMNNTSNNSSVRMTRKRMRQEQDALDKEAGLIPCENYEGNSVERESTRSFLKENASNKHLNLLPFCCEKPLECSTSKANDQSGVDLQESGRRNWLVHALFEYTLDMKLSTDNQTGRLCLFAMHQSSGNSYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ41</accession>
    <name>A0A392MZ41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013533</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023011">
        <property type="protein sequence ID" value="MCH92593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12375" checksum="5F422D28D53804E4" modified="2018-12-05" version="1" fragment="single">GHYSPPVPTDLLEKLAAMKVNTSQDTPTKHNQPKPANQHTQNYENPTMNGIQTTQEDRGKKAHRLTFNNEAMNMENTQELTAQNQSFQAKRQKMEDSSRVGSARQASPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2D5</accession>
    <name>A0A392N2D5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aspartic proteinase CDR1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0014930</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026197">
        <property type="protein sequence ID" value="MCH93976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2D5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.70.10:FF:000050">
        <property type="entry name" value="Aspartic proteinase CDR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033121">
        <property type="entry name" value="PEPTIDASE_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051708">
        <property type="entry name" value="Plant_Aspart_Prot_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032799">
        <property type="entry name" value="TAXi_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47967:SF86">
        <property type="entry name" value="EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47967">
        <property type="entry name" value="OS07G0603500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14541">
        <property type="entry name" value="TAXi_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51767">
        <property type="entry name" value="PEPTIDASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Peptidase A1" evidence="5">
        <location>
            <begin position="1"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH93976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="23678" checksum="B5DE7C3A59187200" modified="2018-12-05" version="1">MGIIGMGGGPLSLVSQIGALYGSKRFSQCLVPFHTDTHTSGTISFGEDSDVSGEGVVTTPLVSEEGQTSYLVTLEGISVGDTFVTFNSSETLSKGNIMIDSGTPATYIPQEFYDRLVEELKVQSNLIPIDDDPDLGTQLCYRSETNLEGPILTAHFEGADVQLMPIQTFIPPKDGVFCFAMAGTTDGEYIFGNFAQSNILIGFDLDRKTVSFKPTDCTNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3F6</accession>
    <name>A0A392N3F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">B3 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0015057</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026498">
        <property type="protein sequence ID" value="MCH94102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005508">
        <property type="entry name" value="At2g31720-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31541">
        <property type="entry name" value="B3 DOMAIN PLANT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31541:SF25">
        <property type="entry name" value="GAMMA-GLIADIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03754">
        <property type="entry name" value="At2g31720-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH94102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="17457" checksum="306A548826F0622C" modified="2018-12-05" version="1">MEEEQPSLPLAFKEKIEQMKGVDVKLVIQKKLTMSDVKGDNSRFYIPIDKKIEESILLTPSERLSLNIYVPQKKRERLVGISISMLDYNLKIWDDMYLKKWKMGKSEIYNITGGWDKLVVENYLEESQKIQLWSFRCNDSLNFALVNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3P7</accession>
    <name>A0A392N3P7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0015400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027332">
        <property type="protein sequence ID" value="MCH94440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3P7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.80">
        <property type="entry name" value="Kelch-type beta propeller"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344:SF25">
        <property type="entry name" value="KELCH REPEAT F-BOX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344">
        <property type="entry name" value="OS02G0202900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18981" checksum="A59E233AF0BF31EC" modified="2018-12-05" version="1">MYDPDTNKWTLIESLRRPRWGCFACGFEDKLYVMGGRSSFTIGNSRFVDIYNPEKHSWCEIKNGCVMVTAHAVLEKKLFCIEWKNQRKLAIFSPENNSWTMVPVPLTGSSSVGFQFGILDGKLLLFPLEKEPTNQTLLYDPNAALGSEWQTSDIKPSGLCLCSVTMKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N415</accession>
    <name>A0A392N415_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027042">
        <property type="protein sequence ID" value="MCH94322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N415"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="281" mass="31774" checksum="F2FC25798D4FF889" modified="2018-12-05" version="1">MVYKLKKALYGLRQAPRAWYNKIESYFCLEKFEKCSYEHTLFVKQGVYSKILIVSLYVDDLIYTENDSQMMEAFKESMKKKFAMTDLGKMKYFLGIEVSQSNEGIFICQQKYAADILSRFGMDNCNKVCSPIVPGCRLVKNENGKASNARLYKQMVGCLMYMLATRPDLAYSVCLIARFMERSTEMHVAAVKRILRYLKGTIGCGIMYRSVSDGNMQLIGWSDSDYAGDVDDMKSTSGFVFMLGTGAISWSSQKQPIMTLSTTEAGYVASTSLRVLVNVFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5I2</accession>
    <name>A0A392N5I2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Acetohydroxy-acid reductoisomerase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0015195</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026849">
        <property type="protein sequence ID" value="MCH94238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5I2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:L-valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371:SF1">
        <property type="entry name" value="KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="15" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="13">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="14">
        <location>
            <begin position="92"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH94238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="26617" checksum="D5AB2E420EC28FA2" modified="2018-12-05" version="1">MKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRYTENGMAEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDGKKEFEKAYSAAFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6L6</accession>
    <name>A0A392N6L6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Metal-nicotianamine transporter YSL2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029249">
        <property type="protein sequence ID" value="MCH95223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13997" checksum="931F4BA699BE41FB" modified="2018-12-05" version="1">MQISDVVMDSFDRSRLVWRRGLFQCEEDLLGQMEVLIREVRLCSSDDQWVWNLEDDGIFSISSAYDRLALDLHNIDPVSDLVSSVFEKIWSSPAPSKIIAFSWQLLXRIWCLRFLRRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N762</accession>
    <name>A0A392N762_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polyadenylate-binding protein 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0016620</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030326">
        <property type="protein sequence ID" value="MCH95640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N762"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008143">
        <property type="term" value="F:poly(A) binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236:SF92">
        <property type="entry name" value="POLYADENYLATE-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9842" checksum="1742E1FC0CA48720" modified="2018-12-05" version="1" fragment="single">MIQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVSAKRTNVPGLKQYFGRRPAGFRARRPFMPSPFYPPYAYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N790</accession>
    <name>A0A392N790_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase SAPK2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016591</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030243">
        <property type="protein sequence ID" value="MCH95611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N790"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10091" checksum="F47B9035690EF1D7" modified="2018-12-05" version="1" fragment="single">MHPWFLNKLPMEFVEEGKNNKLENDVNGVVDSSQSIEEIQSIIQEARKPGEGPKIDGQFVGGGMDFDEMDADDDFDDDIETSGDFDFVCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9P1</accession>
    <name>A0A392N9P1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032080">
        <property type="protein sequence ID" value="MCH96333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="21007" checksum="2115B0077278F61F" modified="2018-12-05" version="1" fragment="single">MAESSHFAQPAIPKFDGYYEHWSMLMENLLRSKEYWGLIENGVVTAPANATAEQRQLADANKLCDLKVKNYLFQSIDRSILETILNRDTAKDIWDAMRXKYQGSTKVKXXQLQSLRREFEILAMGEXESVNEYFARTLAIANKXTAHGERMEQVMVVEKILRSMPSKFNYVVCSIEESNDVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA99</accession>
    <name>A0A392NA99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plastid movement impaired protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017377</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032216">
        <property type="protein sequence ID" value="MCH96391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019448">
        <property type="entry name" value="NT-C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039614">
        <property type="entry name" value="PMI1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33414:SF14">
        <property type="entry name" value="PLASTID MOVEMENT IMPAIRED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33414">
        <property type="entry name" value="PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10358">
        <property type="entry name" value="NT-C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51840">
        <property type="entry name" value="C2_NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2 NT-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="377" mass="42940" checksum="203C720487B91BE3" modified="2018-12-05" version="1" fragment="single">MNGLRLSVCVRKKENKDGAVQTMPSRVVQGAAEFEETLFIKCHVYCNQQGNGKNLKFEARPFWIYLFAVDAKELSFGRNSVDLSQLIQESIEKSRQGNRVRQWETNFSXSGKAKGGELVLKLGFQIMEKDGGIEIYNNEGNLMPSSRFKNLTSSFARRQSKTSFSMPSPRITNKNDAWTPSQRRLAEDIQEMDDLNLDDDPTPNPVHDSYPSTHKLVDDKEKXEEFDLPEFEVVDKGIEVEEKKEDEGEGTEKSIEVKSTSSEIVKEIVHDQLHLTRLTELDLLAKQIKALESMMGEHNKDFDTESQRLDSDEENVTREFLHMLEDQKSRIYKNNQSEIPPLQLEEHDDSSSSCGESNSKVYLPDLGKGLGCVVQTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB41</accession>
    <name>A0A392NB41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative calcium-binding protein CML49-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017425</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032321">
        <property type="protein sequence ID" value="MCH96439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044590">
        <property type="entry name" value="CML48/49/50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46824">
        <property type="entry name" value="CALCIUM-BINDING PROTEIN CML48-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46824:SF1">
        <property type="entry name" value="CALCIUM-BINDING PROTEIN CML49-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="140"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="50"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="63"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="86"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="126"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="20582" checksum="241BFDE705AFA479" modified="2018-12-05" version="1">MSGYPNQPPSYGYGYGAPPPSQSYGAPPPSQSHGSHPPPSQSYGAPPPSQSYGGPPTSQSYGAPPPSQSYGAPPPSQSYGAPPSGSYGQPSAPYAAPYQKPPKEDSHSHSGGGSGAATAYPPPSXASPFASLLPSTFPPGTDPSIVACFQVADQDGSGLIDDKELQRALSSYNQSFSLRTVHLLMYHFTNTNVKKIGTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB68</accession>
    <name>A0A392NB68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nucleosome assembly protein 1-like 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017720</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the nucleosome assembly protein (NAP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033087">
        <property type="protein sequence ID" value="MCH96731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006334">
        <property type="term" value="P:nucleosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1500">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1120.90">
        <property type="entry name" value="Nucleosome assembly protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037231">
        <property type="entry name" value="NAP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002164">
        <property type="entry name" value="NAP_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11875">
        <property type="entry name" value="TESTIS-SPECIFIC Y-ENCODED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00956">
        <property type="entry name" value="NAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143113">
        <property type="entry name" value="NAP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15926" checksum="E234E9063E66D5A2" modified="2018-12-05" version="1" fragment="single">SKHDELETKFLEERAQLQAKYQKLYEPLYTKRYEIVNGVIDVEGITNEAAVGEENKVAEEKGVPSFWLTAMKTNETLAEEITERDEEALKYLKDIKWFKLDNPKGFKLEFYFDSNPYFQNSVLTKTYHMIEEDDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBX2</accession>
    <name>A0A392NBX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017963</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033780">
        <property type="protein sequence ID" value="MCH96971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16837" checksum="015208776F9468EF" modified="2018-12-05" version="1">MSMYHQLSATNGSKPYLILSSQSVRNQSPILIRIIAVCCLGAGTVPVPDTGTGMGTLPQMEYPCIIGGEHLETYPNFEKTQDSLTTRDEPKTTLYPLRYDDRLLPSTQSIHAPSPLEQPLTSQVLLKIQSNSEPIESKIEGWSINGVEHHTST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC54</accession>
    <name>A0A392NC54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIR-NBS-LRR RCT1 resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017664</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032939">
        <property type="protein sequence ID" value="MCH96675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF160">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="2"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16937" checksum="29C1850D6D0319ED" modified="2018-12-05" version="1" fragment="single">ERIYDVFLSFRGKDCRAKFISHLYTSLQNAGIYVFRDDDEIPRGDKISFSLLEAIGKSRISVVVLSSNYADSRWCLLELESIMETGRSRGLVVIPVFYEVDPSEVRHQRGEFGEGFKKLISKVSVGRKMNWKTALLEIGGTAGVVVINSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC82</accession>
    <name>A0A392NC82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017694</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033015">
        <property type="protein sequence ID" value="MCH96705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5294" checksum="EC8670F3490A5AC3" modified="2018-12-05" version="1" fragment="single">NELRNNDDDDDDDDDDDDDDDDDDDDELQLKVCPLNQVCWNLYGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDQ2</accession>
    <name>A0A392NDQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036438">
        <property type="protein sequence ID" value="MCH97997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6414" checksum="84416A89AF4FE0FA" modified="2018-12-05" version="1" fragment="single">CLRDRGVAFCANHGKKMLDLDICISALLDTYLTLHNHTKSGTIDSLGNCATSFPTCRGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NE64</accession>
    <name>A0A392NE64_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Expansin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0019156</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Secreted</location>
            <location evidence="7">Cell wall</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the expansin family. Expansin A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036868">
        <property type="protein sequence ID" value="MCH98157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NE64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009653">
        <property type="term" value="P:anatomical structure morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.760:FF:000001">
        <property type="entry name" value="Expansin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.760">
        <property type="entry name" value="Expansin, cellulose-binding-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007118">
        <property type="entry name" value="Expan_Lol_pI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002963">
        <property type="entry name" value="Expansin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007117">
        <property type="entry name" value="Expansin_CBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036749">
        <property type="entry name" value="Expansin_CBD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31867">
        <property type="entry name" value="EXPANSIN-A15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01357">
        <property type="entry name" value="Expansin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01226">
        <property type="entry name" value="EXPANSIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01225">
        <property type="entry name" value="EXPANSNFAMLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49590">
        <property type="entry name" value="PHL pollen allergen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50843">
        <property type="entry name" value="EXPANSIN_CBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0134">Cell wall</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Expansin-like CBD" evidence="8">
        <location>
            <begin position="28"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH98157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12418" checksum="37B83F5B00868E5C" modified="2018-12-05" version="1" fragment="single">AGIVPVAYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNAAPASWSFGQTYTGRQFNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFQ5</accession>
    <name>A0A392NFQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lysosomal alpha-mannosidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018973</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036378">
        <property type="protein sequence ID" value="MCH97975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004559">
        <property type="term" value="F:alpha-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006013">
        <property type="term" value="P:mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="entry name" value="Glycoside hydrolase 38, N terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000602">
        <property type="entry name" value="Glyco_hydro_38_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050843">
        <property type="entry name" value="Glycosyl_Hydrlase_38"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607">
        <property type="entry name" value="ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11607:SF60">
        <property type="entry name" value="ALPHA-MANNOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01074">
        <property type="entry name" value="Glyco_hydro_38N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="Glycoside hydrolase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 38 N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="13271" checksum="4CC506045B0039D3" modified="2018-12-05" version="1" fragment="single">LGFDSLFFARIDYQDRAKRLKEKTLEVVWQGSRSLGSSSQDDILLFDYNVEERVNDFVSAALAQANVTRTNHIMWEMGTDFRYQYANSWFRQMDKFIHYVNQVLEFVWLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGA3</accession>
    <name>A0A392NGA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019906</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038817">
        <property type="protein sequence ID" value="MCH98897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9638" checksum="7782F99D65A68685" modified="2018-12-05" version="1" fragment="single">AAIVQESRPRKAVLKYRGTRDSRASKSNSNSTDPIHNVSDNSVGVNPPTNQNGSIPSSAVRACLVQGQSLPNYNDETVAYRLXVTKIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGD3</accession>
    <name>A0A392NGD3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Gamma-tubulin complex component</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0019194</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Component of the gamma-tubulin ring complex (gTuRC) which mediates microtubule nucleation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
            <location evidence="5">Cytoskeleton</location>
            <location evidence="5">Microtubule organizing center</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the TUBGCP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036986">
        <property type="protein sequence ID" value="MCH98195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000930">
        <property type="term" value="C:gamma-tubulin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000922">
        <property type="term" value="C:spindle pole"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043015">
        <property type="term" value="F:gamma-tubulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051011">
        <property type="term" value="F:microtubule minus-end binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031122">
        <property type="term" value="P:cytoplasmic microtubule organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051321">
        <property type="term" value="P:meiotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007020">
        <property type="term" value="P:microtubule nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000278">
        <property type="term" value="P:mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051225">
        <property type="term" value="P:spindle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1900">
        <property type="entry name" value="Gamma-tubulin complex, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007259">
        <property type="entry name" value="GCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040457">
        <property type="entry name" value="GCP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042241">
        <property type="entry name" value="GCP_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302">
        <property type="entry name" value="GAMMA TUBULIN COMPLEX PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19302:SF33">
        <property type="entry name" value="GAMMA-TUBULIN COMPLEX COMPONENT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04130">
        <property type="entry name" value="GCP_C_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="3 5" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gamma tubulin complex component C-terminal" evidence="6">
        <location>
            <begin position="6"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH98195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13129" checksum="435990338911D748" modified="2018-12-05" version="1" fragment="single">GRGSTTNNRKHHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMSVAKSLDEVIEAHEAYMLSIQRQCFVVPDKLGALIASRVNIILGLALDFYNIQQTLKRGGAVSANKARF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL04</accession>
    <name>A0A392NL04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0021587</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043606">
        <property type="protein sequence ID" value="MCI00567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="84"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI00567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="323" mass="37113" checksum="7A136F85509713BE" modified="2018-12-05" version="1" fragment="single">MRGEASVFSLMAHLSVENQAVIDELQVVRDFPEVFPDDIPDVPPEREVEFTIDLVPGTKPVSMAPYRMSTSELTELKKQLEELLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCVDYRQLNKVTIKNKYPLPRIDDLMDQLVGSRVFSKIDLRSGYHQIRVKDDDIQKTAFRTRYGHYEYSVMPFGVTNAPGVFMEYMNRIFHTYLDQFVVVFIDDILIYSKSEEEHAEHLRIVLQVLKEKKLYAKLSKCEFWLHKVSFLGHVISGDGIAVDPSKVDAVLQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2S7</accession>
    <name>A0A392P2S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0027117</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060589">
        <property type="protein sequence ID" value="MCI06062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015915">
        <property type="entry name" value="Kelch-typ_b-propeller"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344:SF27">
        <property type="entry name" value="KELCH REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46344">
        <property type="entry name" value="OS02G0202900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117281">
        <property type="entry name" value="Kelch motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI06062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="22958" checksum="13A7F2E9D544E661" modified="2018-12-05" version="1">MPFAKAQVLPTAFLADLLKPIATGMTSYRGRLYVPQSLYCWPFFVDVGGEVYDPDINSWLEMPVGMGNGWPARQAGTKLSVTVNNDLYALDPSSSLNSAKIKVYDEEGDTWKVVAGDVPIHDFADSESPYLLASLLGKLHVITKDDNHNIAVLQADMQNDLASSQSLSSSPDSSFSELAESSAESETDIWRVFASRSGRSAELVSCQSLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8B6</accession>
    <name>A0A392P8B6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription factor bHLH130-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0029409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068674">
        <property type="protein sequence ID" value="MCI08333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8B6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4620" checksum="8C549A2FDEC81046" modified="2018-12-05" version="1" fragment="single">MPNTSSEMAAMEKFLHFSDSVPMKIRAKRGCATHPRSIAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYM4</accession>
    <name>A0A392PYM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chaperone protein ClpB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0037216</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099302">
        <property type="protein sequence ID" value="MCI16075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058680">
        <property type="entry name" value="NBD_SMAX1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051650">
        <property type="entry name" value="SL_signaling_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572">
        <property type="entry name" value="CHAPERONE PROTEIN CLPD, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572:SF31">
        <property type="entry name" value="PROTEIN SMAX1-LIKE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23569">
        <property type="entry name" value="NBD_SMAX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="SMAX1-like nucleotide binding" evidence="3">
        <location>
            <begin position="61"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI16075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="20039" checksum="9C381DBB87CA905D" modified="2018-12-05" version="1" fragment="single">DPSVSRVMREAGFNSTQVKTNVEQAVSLENTSSHVSGKSKENNNQEKVSNKALVLDPIRVEDINSVVDNLKMNQRKSIVVVGECVTNLEGVVKGVMEKFDKGDVDESLKGVKFISLSLCDFGNVSRLEVDEKVEELKGLAKKSFHGKGYVLYLGDLKWLFDYKKQQGISGYYCSIDHMLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYP4</accession>
    <name>A0A392PYP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Calmodulin-binding transcription activator 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0037598</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100941">
        <property type="protein sequence ID" value="MCI16456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335:SF30">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12301" checksum="5D99D2EF7FB5107D" modified="2018-12-05" version="1" fragment="single">AHVRGHQVRKNYGKMKIIWSVGIVEKVILRWRRKGSGLRGFKSEAVAEGVSSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTEIQENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q535</accession>
    <name>A0A392Q535_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polygalacturonase inhibitor-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003799</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004481">
        <property type="protein sequence ID" value="MCH82985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010113863">
        <property type="protein sequence ID" value="MCI19234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q535"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051848">
        <property type="entry name" value="PGIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48059">
        <property type="entry name" value="POLYGALACTURONASE INHIBITOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48059:SF4">
        <property type="entry name" value="POLYGALACTURONASE INHIBITOR 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI19234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9260" checksum="A7CB43BF7757ED1F" modified="2018-12-05" version="1">MLVFDMGQLEFPKTLKHLDVSHNRIYGKLPEGVTDLEWLDVSYNRLCGEIPNGGIVQAMGRKSYSHNKCLCGSPLPSCKKYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUC4</accession>
    <name>A0A392UUC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010954029">
        <property type="protein sequence ID" value="MCI78589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8034" checksum="721528A8869D0A42" modified="2018-12-05" version="1" fragment="single">GRTVVVLSQSGPGSSSSPGGGYACSSEPMETPQKRQRQDDSVVDLTASEPKFVLPNCFGARGFFEKFPPAVPDSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVF4</accession>
    <name>A0A392UVF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967534">
        <property type="protein sequence ID" value="MCI79163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7585" checksum="9E23A4A76775CC81" modified="2018-12-05" version="1" fragment="single">MCCREVTRSLKAQENVFVLFASLRMEEKTEVDALPVVREFTDVFPNDILDLPPEREVEFSIDIVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW89</accession>
    <name>A0A392UW89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100246</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963264">
        <property type="protein sequence ID" value="MCI78975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4525" checksum="CB472280B4FA7F65" modified="2018-12-05" version="1" fragment="single">MSSEELAGLEKLRAYVNGFVPARCVNREGDPVFDAKGNERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX53</accession>
    <name>A0A392UX53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0101885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999564">
        <property type="protein sequence ID" value="MCI80614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5259" checksum="4BFB84AB83D50CFE" modified="2018-12-05" version="1" fragment="single">MKIRDAPVEAARRALERTSLMHDPTNWRDAPSSPARRADDRSFPIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX65</accession>
    <name>A0A392LX65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000162">
        <property type="protein sequence ID" value="MCH79518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039904">
        <property type="entry name" value="TRANK1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21529">
        <property type="entry name" value="MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21529:SF4">
        <property type="entry name" value="TPR AND ANKYRIN REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="757"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="771"/>
            <end position="786"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="786" mass="90308" checksum="AFD801DE17118CE2" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX73</accession>
    <name>A0A392LX73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000188">
        <property type="protein sequence ID" value="MCH79549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017336528" evidence="1">
        <location>
            <begin position="25"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7298" checksum="382091144C3AD893" modified="2018-12-05" version="1">MASSSSVVFSFTMFLLLLISTATANIGKDQFSGQKTVIELCEFWYDQCVRFRLYCDLNPVCNIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXK6</accession>
    <name>A0A392LXK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="20">Transposon Tf2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="20" type="ORF">A2U01_0000437</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000284">
        <property type="protein sequence ID" value="MCH79683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="GO" id="GO:0004190">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="16" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="18">
        <location>
            <begin position="551"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="19">
        <location>
            <begin position="1012"/>
            <end position="1176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="30"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="192"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="16">
        <location>
            <begin position="1190"/>
            <end position="1217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="17">
        <location>
            <begin position="36"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="17">
        <location>
            <begin position="199"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="17">
        <location>
            <begin position="289"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="1397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCH79683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1397" mass="157986" checksum="AD683EA74B057EEF" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXS7</accession>
    <name>A0A392LXS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="21">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">A2U01_0000484</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000319">
        <property type="protein sequence ID" value="MCH79728.1"/>
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    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="16" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="19">
        <location>
            <begin position="594"/>
            <end position="773"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="20">
        <location>
            <begin position="1112"/>
            <end position="1276"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="18">
        <location>
            <begin position="1419"/>
            <end position="1466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="210"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="16">
        <location>
            <begin position="1297"/>
            <end position="1324"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="17">
        <location>
            <begin position="221"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="17">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="21">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH79728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1521" mass="173409" checksum="3C99372D89B39B03" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYG9</accession>
    <name>A0A392LYG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Phosphoglucan water dikinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0000772</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000591">
        <property type="protein sequence ID" value="MCH80010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054481">
        <property type="entry name" value="GWD1_pHisD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47453">
        <property type="entry name" value="PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47453:SF1">
        <property type="entry name" value="PHOSPHOGLUCAN, WATER DIKINASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22973">
        <property type="entry name" value="GWD1_pHisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Alpha-glucan water dikinase phosphohistidine-like" evidence="8">
        <location>
            <begin position="161"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF22973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH80010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="303" mass="33102" checksum="258B1F97E1FB6401" modified="2018-12-05" version="1" fragment="single">MNRFLNVLEVMGGAGWLAANLQSKNVNSWNDPLGALIIGVHQLKLSNWKPEECAAIENELIAWSTRGLSESEGNEDGKKIWTLRLKATLDRSKRLTEEYTEELLKIFPQKVEMLGKALGIPENSVKTYTEAEIRAGVIFQVSKLCTLLLKAVRSTLGSQGWDVIVPGAVLGTLVQVERIVPGLLPSPVEGPIILIVNKADGDEEVTAAGRNIVGAILKQELPHLSHLAIAYYRKRLEASAAGVNLTLSSSVDLDGKLSVESVFDDNISGVEVPAFSDARIFKYSQEDCMISLILSKSQLHRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYP1</accession>
    <name>A0A392LYP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chaperone protein dnaJ mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0000841</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000661">
        <property type="protein sequence ID" value="MCH80079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.230.10:FF:000002">
        <property type="entry name" value="Molecular chaperone DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.230.10">
        <property type="entry name" value="Heat shock protein DnaJ, cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.260.20">
        <property type="entry name" value="Urease metallochaperone UreE, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43096">
        <property type="entry name" value="DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43096:SF52">
        <property type="entry name" value="DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="DnaJ/Hsp40 cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="HSP40/DnaJ peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CR-type" evidence="7">
        <location>
            <begin position="42"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="6">
        <location>
            <begin position="42"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH80079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20010" checksum="FBDB101F43B4D7F9" modified="2018-12-05" version="1" fragment="single">MLADRMSRLSLNYLLWKLSKGAPKLCHFKQMXFVILVGLNPDKLTLLEINTFLPCRTVAGGSGVPPGTRPETCKRCKGSGVMYVQTGFFRMQSTCPTCTGTGKIVSSFCQSCNGAKVVKGTKSIKLKTIPGMDNNDTLKVSGVGGADPDGNHSGDLYVTIKVREDPVFRREGLDIHVDAVLSITQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ68</accession>
    <name>A0A392LZ68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001077</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000909">
        <property type="protein sequence ID" value="MCH80310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007005">
        <property type="term" value="P:mitochondrion organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051114">
        <property type="entry name" value="Mito_RNA_Proc_CCM1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47934">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47934:SF20">
        <property type="entry name" value="PPR DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="137"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="27522" checksum="6AAA375E41869907" modified="2018-12-05" version="1">MVKVLCSKKETVHLALEILNDIPEQLTDEEDLWLKQRLCMHVAEALCGFKELEAAKQLILKPIANSEHPSMYVINIIITALVKAGEIRQVLEMVMLLESIGFDIFEPLMFGFGRSNGMLQIKKILEEAKKKDCKLINALLCHTLIVGYYKLKKFDVALKLLTQMKDFGFSDTNLDEYRKLIHSVSLMAMDRKMAKEQLAEMEPMDKEMVEEQLGRMAAMDSVMIEKQLEEMYLNIRALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZE2</accession>
    <name>A0A392LZE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000285">
        <property type="protein sequence ID" value="MCH79684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="190"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="276" mass="31359" checksum="AA94C8771F44B6D3" modified="2018-12-05" version="1">MFVDIHDLEMRVRDVYIDGNWQFNSLYTNLPQAIKAKLNSSTISLNPYVNDCYTWKGNLNGIYTARDGYYWLNRNSFSANATSVVSWSWLWHLPAPEKLKFFLWTMLHNSLPTREMLSHRGIINDNLCPRCNIHAETTLHCLRDCNFVKTIWNSIGFSDQDFFQGDDSYNCNIIHHETPTSKLVKWNALGGTGMILNVDGSSSNPGISGFGGLIHNADGAWVHGFFGNLGVTNILHAELMAIYKGLLLAWELNIKDLWCYSDSEMAIKLITEPVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1J3</accession>
    <name>A0A392M1J3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0001917</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001922">
        <property type="protein sequence ID" value="MCH81136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14798">
        <property type="entry name" value="RX-CC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001091">
        <property type="entry name" value="Probable disease resistance protein At1g61300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038005">
        <property type="entry name" value="RX-like_CC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF42">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="6">
        <location>
            <begin position="5"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="NB-ARC" evidence="5">
        <location>
            <begin position="188"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="7">
        <location>
            <begin position="424"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH81136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="460" mass="52102" checksum="804A0EBEED19FDD2" modified="2018-12-05" version="1" fragment="single">MAEAVIEVVLDNLSSLIQKELGLFLGVDRELKSLSSLLTTIKATLEDAEEKQFSNRAIKDWLHKLKDAAHILDDILDECATQALEYGGTKGRLSNKVKSSFLSSFHPKHVAFRYKIAKKMKSIRERLDEIAEERSKFNLTEIVRENKSGVSDWRQTTSIISQPQVYGRDEDRDXIIDFFVGXASSFEDLSVYPIVGLGGLGKTTLAQLIFNHDRIVNHFELRIWVCVSEDFSLKRMIKSIIESTSGQATADLELEPLQRRLVDLLQRKRYLLVLDDVWDDEQGNWKRLKSVLACGGKGASILVTTRLPKVAAIMGTMPPHDLSMLCDTDCWKMFKQRAFGTNEDERTELVVIGKKIVKKCGGVPLAAIALGSLLRFKREENEWLYVLENELWTSQGENSVRPALRLSYLNLPVKLRQCFAFCALFPKGEIINKQFLIELWMANGFISSNGMLEAEDIGNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1N3</accession>
    <name>A0A392M1N3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RING-type E3 ubiquitin transferase</fullName>
            <ecNumber evidence="2">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0001947</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010001958">
        <property type="protein sequence ID" value="MCH81165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1N3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051348">
        <property type="entry name" value="U-box_ubiquitin_ligases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647">
        <property type="entry name" value="OS02G0152300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45647:SF22">
        <property type="entry name" value="U-BOX DOMAIN-CONTAINING PROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="77"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH81165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28407" checksum="9E6B282444B1CE3B" modified="2018-12-05" version="1" fragment="single">MRLDREDTPGIETTPVLLMLDSNTEAKQSEKIKSELIPNVLKYLDSSDMEETENVIARTKLTDLLIHEDDEALQNWRAKEISRRKEVEKQLARKKQDVLEMKNQRDKIICELQMVRDQSSALRNQLFESNCTATELEEKFLSAVDLLISFKEKRDKLRIEHANAVRKVKVLTKIGEADTTSSYVVEFPTFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSQLEFQHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1T2</accession>
    <name>A0A392M1T2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Myosin-H heavy chain-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0001751</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="9">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001712">
        <property type="protein sequence ID" value="MCH80973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1T2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016459">
        <property type="term" value="C:myosin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030048">
        <property type="term" value="P:actin filament-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.190:FF:000018">
        <property type="entry name" value="Myosin XI D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.5.190:FF:000001">
        <property type="entry name" value="unconventional myosin-Va"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001609">
        <property type="entry name" value="Myosin_head_motor_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140">
        <property type="entry name" value="MYOSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140:SF836">
        <property type="entry name" value="MYOSIN-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00063">
        <property type="entry name" value="Myosin_head"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00242">
        <property type="entry name" value="MYSc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51456">
        <property type="entry name" value="MYOSIN_MOTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0505">Motor protein</keyword>
    <keyword evidence="6 9" id="KW-0518">Myosin</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Myosin motor" evidence="10">
        <location>
            <begin position="1"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Actin-binding" evidence="9">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH80973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="368" mass="42033" checksum="24969445045B91BC" modified="2018-12-05" version="1" fragment="single">MFPRSTNETFAQKLYQTFKNHKRFTKPKLSRSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLYASQCPFVSGLFLPSPEESSNKSKFSSIGSRFKQQLQALLEILSSTEPHYIRCVKPNNLLKPAIFEHKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPEALDRSSDEVTACKRILEKVGLKGYQIGFTKVFLRAGQMAELDTYRSEILGKSASIIQRKVRSYLARRSFVSIRLSAIQIQAACRGQLARKVYEGLRQEASSLIIQRCFRMHIARKAYIGLYSSAISIQTGMRGMAARCELRFRKQTSAAIIIQSHCRKYLAQHHFINLKKAAIATQCAWRGKVARRELRNLKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2E9</accession>
    <name>A0A392M2E9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002354">
        <property type="protein sequence ID" value="MCH81480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2E9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17039">
        <property type="entry name" value="Ubl_ubiquitin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="29421" checksum="332E23BB18756774" modified="2018-12-05" version="1" fragment="single">TLFYVQVMNDATVEDLKREIEAQLKLPCDRLILIHDDDHWPLMTKDEEKESLVDCGIQDGSHIYIFFNSIDDESTKHFGFTLPDFLLGIILSVESLFKAFLWGESEEVRKINWTNWDVVCQDRDLGGLRVRRIREFNLALLEKWCWRLMVEQNGLWFQVLVVKYGMEYGRVKGRGRMAPVWWKDLCHIRDRVGESVGHWFENNRRLTVGNGENTMFWKDRWVAVEEVFVHVGGRVGYRVWCCVGKCVITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2K4</accession>
    <name>A0A392M2K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mitochondrial-like Rho GTPase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002321">
        <property type="protein sequence ID" value="MCH81459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="9897" checksum="4B0F8C51AEB080C5" modified="2018-12-05" version="1" fragment="single">GMGVKAPMPISAELGDFNNIFRRIVTAAEHPHLSIPKTVAGKTRKQHQKLIDLSLMFVLVGLGAAVAVEVGAARKNASKXXXXXXXXXXXSIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M366</accession>
    <name>A0A392M366_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/RNI/FBD-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002676">
        <property type="protein sequence ID" value="MCH81716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M366"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006566">
        <property type="entry name" value="FBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055357">
        <property type="entry name" value="LRR_At1g61320_AtMIF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF30">
        <property type="entry name" value="SUPERFAMILY PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23622">
        <property type="entry name" value="LRR_At1g61320_AtMIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00579">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FBD" evidence="1">
        <location>
            <begin position="302"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="376" mass="42185" checksum="32A7C649DE1E3B18" modified="2018-12-05" version="1">MRLSCGYSQPQNEDPHAYLYDSWVRSGDRFTVLSVDSWIRIAVGPYLEELYLALFSCEDHGFRLPLSVLSCPNLHTVSLCGDIVVELEQSSAICLPSLKTLQLDIGNVDVNSVGILLSGCPILETLELSFSPTSLGKLCVPSSLKSLKFTVENDIGACLEIDAPGLRYLSLTKITFGDAEAVGNLHNVKEAYLDIFSTPENESVDPLLILLQALSEIKHLVLHCSIAKKRLLGGQPIIDFSKIQFPEFYHLRYLELILPTFDTFLYDVLQKCPMLQALIIQNNKDTSKHEYGLAVKPESVPNCVVSHLTSIHFKGYQGDIPEMEFANYVLQNGLVLKSMIITDFLLEKKEKWKKYRFRENLSNTPKGSTVCQVNFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3G2</accession>
    <name>A0A392M3G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002353</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002449">
        <property type="protein sequence ID" value="MCH81563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="182"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="264"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="667"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="731"/>
            <end position="764"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="792"/>
            <end position="823"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="264"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="805"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="872"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="872" mass="98948" checksum="2F1BEA8D6E5E311A" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3K5</accession>
    <name>A0A392M3K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="27">Protein EIN4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="27" type="ORF">A2U01_0002654</name>
    </gene>
    <organism evidence="27 28">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="27 28" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="28">cv. 10/8</strain>
            <tissue evidence="27">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="23">Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.</text>
    </comment>
    <comment type="function">
        <text evidence="2">May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="24">Heteromer with ETR1. Binds to MRF3/ECIP1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer; disulfide-linked.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endoplasmic reticulum membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ethylene receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="27">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002879">
        <property type="protein sequence ID" value="MCH81861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051740">
        <property type="term" value="F:ethylene binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038199">
        <property type="term" value="F:ethylene receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010105">
        <property type="term" value="P:negative regulation of ethylene-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd19933">
        <property type="entry name" value="REC_ETR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2300:FF:000240">
        <property type="entry name" value="Ethylene receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.130:FF:000087">
        <property type="entry name" value="Ethylene receptor 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24423:SF629">
        <property type="entry name" value="PROTEIN EIN4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24423">
        <property type="entry name" value="TWO-COMPONENT SENSOR HISTIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="CheY-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55781">
        <property type="entry name" value="GAF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="Homodimeric domain of signal transducing histidine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="18" id="KW-0186">Copper</keyword>
    <keyword evidence="21" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="14" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="12" id="KW-0936">Ethylene signaling pathway</keyword>
    <keyword evidence="6" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="20" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 25" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="22" id="KW-0675">Receptor</keyword>
    <keyword evidence="28" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="17" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="19" id="KW-0902">Two-component regulatory system</keyword>
    <keyword evidence="16" id="KW-0832">Ubl conjugation</keyword>
    <feature type="domain" description="Response regulatory" evidence="26">
        <location>
            <begin position="408"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="25">
        <location>
            <position position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="23">
        <source>
            <dbReference type="ARBA" id="ARBA00056860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="24">
        <source>
            <dbReference type="ARBA" id="ARBA00062048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="25">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="26">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="27">
        <source>
            <dbReference type="EMBL" id="MCH81861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="28">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="533" mass="59425" checksum="2C1811A3495F638B" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3P4</accession>
    <name>A0A392M3P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD/NAD(P)-binding oxidoreductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002792</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003069">
        <property type="protein sequence ID" value="MCH81997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039648">
        <property type="entry name" value="DHPH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028348">
        <property type="entry name" value="FAD-binding_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42842">
        <property type="entry name" value="FAD/NAD(P)-BINDING OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42842:SF3">
        <property type="entry name" value="FAD_NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00070">
        <property type="entry name" value="Pyr_redox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyridine nucleotide-disulphide oxidoreductase N-terminal" evidence="1">
        <location>
            <begin position="77"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="189" mass="20514" checksum="31C8953C97172836" modified="2018-12-05" version="1" fragment="single">MDVQKLLSLEPRSWDFISELQPKVGLVERVQDGGEFGDLMSIIXDCKENKEGVAEGENGHNIFSKELYKTKDTRKPKIAVVGSGPSGLFAALVLGELGADVTLIERGQPVEKRGRDIGALVVRKILELESNFCFGEGGAGTWSDGKLVTRIGRNSGSVIAAIERYDSNLAMGDTLDKLESDVDNYAKND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4A0</accession>
    <name>A0A392M4A0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rab3 GTPase-activating protein catalytic subunit-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003281">
        <property type="protein sequence ID" value="MCH82156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4A0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045700">
        <property type="entry name" value="Rab3GAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21422">
        <property type="entry name" value="RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21422:SF9">
        <property type="entry name" value="RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25665" checksum="FE729C3596F0394B" modified="2018-12-05" version="1">MVRRIYCVNMFDFDAVKGAVLLEDSGNLYKVTSETKYALKTYCMEYYFEANPADDAGKPANWNFDLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIALSNCSSLWPAFVPVHDPSRKAYIGIQSMGTVFTRRFEADRIGSQAYSTLDLSVHNFKVRIAMKLTFRTLPFDEDYMKDFDAKFTNSGENLTGETSNGTQWDDDCSWSEWYSAEDPVKVQGNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4E0</accession>
    <name>A0A392M4E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003345">
        <property type="protein sequence ID" value="MCH82196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF26">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15735" checksum="70BA5A4EC4CF2DB0" modified="2018-12-05" version="1">MCLSLAMEIPMATNATLQQGQVGSDGLYEFPTIRLHTAKPPLNSQYLWHLRLGHPHSNILKLVLQHKLHSLPSRTQYTHPLELVFSDLWGPSPQPSTLGYNYYTITFVDAYSRIYLLKFKSDAFIIFKQFKAMVENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M527</accession>
    <name>A0A392M527_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mitogen-activated protein kinase kinase kinase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003241</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003687">
        <property type="protein sequence ID" value="MCH82435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M527"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052751">
        <property type="entry name" value="Plant_MAPKKK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48011">
        <property type="entry name" value="CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48011:SF95">
        <property type="entry name" value="MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="207"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="219"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="395" mass="44271" checksum="CF71963ECF6A15ED" modified="2018-12-05" version="1">MTTGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSTEAKDFLLKCFHKEPDLRPSASDLLLHPFITCEYQDSHSISCSSIRDSCNQMATNGMNSRNFLDSIQGSTCTGLKDVRQMDSLRFSTVYHANPLNAGSYQGTNNYDDDMCQIDDKDDFLVASSVNSKSLLAADDIKSFNPMCEPVEDDWPCKFDETPNLKKSRLNLSPDQTIRKTMSPEPSPNADNEFSFSSEPLGVEDDDEVTEFKIRAFLDDKAFELNKLQTPLYEEFFGKSNAAIPPVPVAVAQSKVISDVSNVTSKSRSPSQARRRFSMASIVNVTSPGSDRKYFAKISGVTAHSRPLQEIQPSGLNESKETLHEAGLESFSVSSSFSERQRKWKEELAEELERTRGKFFCFIDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5J9</accession>
    <name>A0A392M5J9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003166</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003578">
        <property type="protein sequence ID" value="MCH82363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="474" mass="53856" checksum="B32E184F2C09DDDF" modified="2018-12-05" version="1">MHSLIASNQSAFIKGRNLVDGVVVVNEVVDSAKKLGKECLIFKVDFEKAYDSVDWGFLEYMLRRFGFCEVWIGWMKACVFGGNLLVLVNGSPTGEINIQRGLKQGDPLAPFLFLLVAEGFGGSMRRAGELNLFKGFSICREGPTISHLQYADDTLCIGEASVDNLWTMKALLRGFELASGLKVNFWKSCLIGINVGDSFMDMACTFLNCIRGGLPFKYLGLPVGANPRRLSTWVPLLEKIRKKLNNWGNKHISLGGRVVLINSVLNSIPIFYLSYMKMSVQVIKKVTRIQREFLWGGVNGGKKLSWIKWKVVCQEKKNGVLENWLAEAIERRLGNGMQIRFWIDLWLGDTPLCAKFPRLFSISLQKHACVREMIVETEADPCFWNFQWRRTLFQWEEETVSQLMVLLDRVTLSNEADLWRWLLDPEGCFSVKSAFALLSRELVVGPMLSPFELKIFIRFGKVWHHPRCGNCDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5S6</accession>
    <name>A0A392M5S6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002713">
        <property type="protein sequence ID" value="MCH81744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5S6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12901" checksum="66183D3EFE9F8319" modified="2018-12-05" version="1">MCRRDWGVGGGGWSWRRPLFVWEEEMLEGCCGLFYNFVLQLNVIDKWLWRSLHSDVFTVKGAYQSLTRVEEWLGIQGAFHNNQVVHAHHFIGLQIQWYFKLNYMFGGGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6T3</accession>
    <name>A0A392M6T3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004647">
        <property type="protein sequence ID" value="MCH83096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6T3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8499" checksum="214A0BA2264ADFA4" modified="2018-12-05" version="1" fragment="single">VIGHHISVCKWLNPAKDNKKEERGKQGMHDNIKKVVKREYVGKNRGLDAGTSKNAETIQVYVPNQAIVVTNKEEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M753</accession>
    <name>A0A392M753_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004942">
        <property type="protein sequence ID" value="MCH83297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="18339" checksum="CD969EB6B55E6D19" modified="2018-12-05" version="1" fragment="single">MVDSSIPHPSLNPPSTPKPKRVWVSPEIHQVRCLYVSIGIXKAFGRVGNPDEWEAILPGADYSINDESALCVIPMYEVVFETMQVSLPFSRFEVEVINFLMVAPSQIHPSGWVLMKAYQFWFKYFKRWCALRLFFTLFHVYRREERGRYGFVGFDQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7P7</accession>
    <name>A0A392M7P7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">B3 DNA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003610</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004203">
        <property type="protein sequence ID" value="MCH82798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7P7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="20366" checksum="C7585028C0E899B4" modified="2018-12-05" version="1">MTILPDVENVIRIDEPEVIQIESTDDETDHPTEVLANESNHSEDDPEIKNLEEEFAADEDVEIHSWAMKVTATMANLRKKQVLHLPNEFSRNVIGNIEHIRLMSEDTEFFYDCNIISSARTTDVGCYEKHIGDGWYQFMQRHRPSVGDTLLFTLVEPPPLELNVKIERWNTRHYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M828</accession>
    <name>A0A392M828_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino-acid permease BAT1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003751</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004405">
        <property type="protein sequence ID" value="MCH82938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015185">
        <property type="term" value="F:gamma-aminobutyric acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015180">
        <property type="term" value="F:L-alanine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005313">
        <property type="term" value="F:L-glutamate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015189">
        <property type="term" value="F:L-lysine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45649">
        <property type="entry name" value="AMINO-ACID PERMEASE BAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45649:SF30">
        <property type="entry name" value="AMINO-ACID PERMEASE BAT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006060">
        <property type="entry name" value="AA_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="266"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="37933" checksum="293C0229B98CAFF4" modified="2018-12-05" version="1" fragment="single">FNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYEGSKYVTIAFHGGILVLHGIMNSLPISWLSFLGQLAAFWNVLGVFVLMIIIPSVAPERASAKFVFTNFNSDNGEGIXSKPYIFLLGLLMSQYTLTGYDASAHMTEETKDADINGPKGIISAVGISVIAGWGYILGITFAVTDIPYLLDENNEAGGYAIAEVFYLAFKRRYGHGFGGIICLGIVAVAIFFCGMSSVTANSRMAYAFSRDGAMPWSSLWHKVNSQEVPINAVWLSVIISFCMALTSLGSIVAFEAMVSIAVIGLYIAYALPIFFRVTLARKRFVPGPFNLGIYGVLVGWIAVLWVAIISILFSLPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M927</accession>
    <name>A0A392M927_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA-directed RNA polymerase I subunit RPA49</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004469</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the eukaryotic RPA49/POLR1E RNA polymerase subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005522">
        <property type="protein sequence ID" value="MCH83643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M927"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005730">
        <property type="term" value="C:nucleolus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009668">
        <property type="entry name" value="RNA_pol-assoc_fac_A49-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14440">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06870">
        <property type="entry name" value="RNA_pol_I_A49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16239" checksum="091B4522C09284CF" modified="2018-12-05" version="1">MQNIERYFTFPPCPLPCSSSVECLCVCVELSCGQKWAEIRKDEEEPEAKKNLAEKMKNVEVKEIAIANTEAHVTRQIPPYNASATTPQEAYVLDEIILAGEWKYLQNIYYSLQKGADFSGYPTFIRNRIDRLKKIEVFIQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9Q3</accession>
    <name>A0A392M9Q3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MEI1 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006453">
        <property type="protein sequence ID" value="MCH84212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9Q3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="289" mass="33448" checksum="F285F9B6C029BDC3" modified="2018-12-05" version="1">MAGSSKGIDAEETIAAQQRLIDADCHSFYTIGFSKDMFEVKTLKDRGYDFRKLINLINPISKIIDLDVLRKLFRRCTRKNDFWCFTDYIVWLKNDDRGKPLLEEALATIAKPLEESHVDLARKMLQFRASRRIAQKDITDQREKLLKCQQELQTKALNIKQDLEEVLGPLYEFEDISMEQLRIKTYKLYEADCRLKGITPISKIRSKGFTTAIDMFGETVKEEHFLDFVNQPRKKLEIENHFEKGILMLNEKGDLVINAAGEEEGDFMIGENDDLVYNAADGEKGDLMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9S0</accession>
    <name>A0A392M9S0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Elongation factor Ts, mitochondrial</fullName>
            <shortName evidence="4">EF-Ts</shortName>
            <shortName evidence="4">EF-TsMt</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">EFTS</name>
        <name evidence="7" type="ORF">A2U01_0005017</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the EF-Ts family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006408">
        <property type="protein sequence ID" value="MCH84186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070125">
        <property type="term" value="P:mitochondrial translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd14275">
        <property type="entry name" value="UBA_EF-Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.10:FF:000001">
        <property type="entry name" value="Elongation factor Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.479.20:FF:000012">
        <property type="entry name" value="Elongation factor Ts, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.286.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.20">
        <property type="entry name" value="Elongation factor Ts, dimerisation domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00050">
        <property type="entry name" value="EF_Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036402">
        <property type="entry name" value="EF-Ts_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001816">
        <property type="entry name" value="Transl_elong_EFTs/EF1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014039">
        <property type="entry name" value="Transl_elong_EFTs/EF1B_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018101">
        <property type="entry name" value="Transl_elong_Ts_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00116">
        <property type="entry name" value="tsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741">
        <property type="entry name" value="ELONGATION FACTOR TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741:SF0">
        <property type="entry name" value="ELONGATION FACTOR TS, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00889">
        <property type="entry name" value="EF_TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54713">
        <property type="entry name" value="Elongation factor Ts (EF-Ts), dimerisation domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01127">
        <property type="entry name" value="EF_TS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 5" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="3 4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Translation elongation factor EFTs/EF1B dimerisation" evidence="6">
        <location>
            <begin position="95"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_03135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH84186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="283" mass="31183" checksum="DD33EB924B5CF588" modified="2018-12-05" version="1">MGLSGAGRRVYMRLLSGANYSSFSASKEMNLIKQLRERTSAPIKQVKAALVDSNWDIESAQKELRKRGIVLASKKSSRTASEGLLALAQNHYKTALIELNCETDFVARNDIFQHLALSLAKQALLLDNNNNNNNINNSSSTFHFGPQSLEEMKLNLQHPKINGETTVQNAITEVAAIMGENVRLRRGYVMSAPPHGLVSTYLHTTPQPGLARIAGILSLEVDGGKTQAADALQRIGSELAMHVVAAKPLFLTKELVSLDALENEREILKSQVLVFHDFSWSYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBB4</accession>
    <name>A0A392MBB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Plant/F27B13-30 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007388">
        <property type="protein sequence ID" value="MCH84797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31115">
        <property type="entry name" value="OS05G0107300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31115:SF7">
        <property type="entry name" value="PLANT_F27B13-30 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14002" checksum="AF0951309D9AE955" modified="2018-12-05" version="1" fragment="single">EDRTFPIGGDGWEKSKTKKKRSVIKPDGSPSTTSARPGNIFQETKQGMQQRLATDARSKLSNDSHSFRSGLSNGTAGAGKSDGVSQQAGMGTRVSTPRNDTDSNSTVNDRRDRPVNSDKERMNFRAANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBE4</accession>
    <name>A0A392MBE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Arginase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004949</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the arginase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006290">
        <property type="protein sequence ID" value="MCH84118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008783">
        <property type="term" value="F:agmatinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033389">
        <property type="term" value="P:putrescine biosynthetic process from arginine, via agmatine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.10">
        <property type="entry name" value="Ureohydrolase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="ARGINASE/AGMATINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358:SF26">
        <property type="entry name" value="GUANIDINO ACID HYDROLASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="Arginase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="27089" checksum="D586982229CADE99" modified="2018-12-05" version="1" fragment="single">NTGRNDSLLPFRNGLPSAIDNTEMSTIARRGIHFMQRLNSANVSSALLEKGQNRVIDASLTLIRERAKLKASHYLGELVRALGGAVATSSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKDLQDARVLTDVGDVPIQEIRDCGVDDHRLMNVISESVKLVMEEDPLRPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDNYDAFEGNIYSHASSFARVMEGDYVRRLLQVTFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC58</accession>
    <name>A0A392MC58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transformation/transcription domain-associated protein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005568</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007284">
        <property type="protein sequence ID" value="MCH84733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017382308" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5755" checksum="463A283D2D84FFF4" modified="2018-12-05" version="1" fragment="single">VATNYGTSLKVSMISALKFLLVCLSSQLNLPGIVADEECTSKHLLGTVAESNSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC99</accession>
    <name>A0A392MC99_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glycosyltransferase</fullName>
            <ecNumber evidence="5">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0005514</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010007204">
        <property type="protein sequence ID" value="MCH84679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd03784">
        <property type="entry name" value="GT1_Gtf-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000047">
        <property type="entry name" value="Glycosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000302">
        <property type="entry name" value="Glycosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035595">
        <property type="entry name" value="UDP_glycos_trans_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48047">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48047:SF45">
        <property type="entry name" value="SCOPOLETIN GLUCOSYLTRANSFERASE-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00375">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH84679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="477" mass="53564" checksum="811A519FC8EF136B" modified="2018-12-05" version="1">MGALNLEERPMKFHFIPYPAQGHMIPLCDIATLFASCGHHVTIITTPSNAQILLKSIPSHKNLCLHTIPFPSHQVGLPPGVENLGSVNNLDNSYRVHQAAMLLQSPIQHFMEQDSPDCIVADFMFLWVDELANKLHIPRLAFNGFSLFTICAMESLKARGFESSVIKGLPHCITLNATPPKALTKFMEPLLETELKSYGLIVNNFAELDGEEYIEHYKKTTGHRVWHLGPVSLICRTTEEKAERGQTSAVSVHECMSWLNSKQPNSVLYICFGSLCHFSNKQLYEIASAIEATNHQFIWVVPEKKGKEDESNDENNKWLPKGFEERNKGMIIRGWAPQVVILGHPAIGAFLTHCGWNSTVEAVSAGVPMITWPVHDEQFYNEKLITQVRGIGVEVGAEEWSIIGFMERKKLVGRDIIEKAVRRLMDGGIEANEIRQCAKEYAIKAKRSVQEGGSSHKNLMALIDDLKRLKDYKPLDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCB3</accession>
    <name>A0A392MCB3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Chromatin-remodeling ATPase INO80</fullName>
            <ecNumber evidence="11">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0005985</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Component of the INO80 chromatin-remodeling complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">The DBINO region is involved in binding to DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the SNF2/RAD54 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="11"/>
    <dbReference type="EMBL" id="LXQA010007970">
        <property type="protein sequence ID" value="MCH85142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCB3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031011">
        <property type="term" value="C:Ino80 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10810:FF:000006">
        <property type="entry name" value="Putative DNA helicase INO80"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="entry name" value="Tandem AAA-ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050520">
        <property type="entry name" value="INO80/SWR1_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685:SF2">
        <property type="entry name" value="CHROMATIN-REMODELING ATPASE INO80"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685">
        <property type="entry name" value="HELICASE SRCAP-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0347">Helicase</keyword>
    <keyword evidence="6 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="12">
        <location>
            <begin position="29"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH85142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="269" mass="30928" checksum="CF76E232CDDB29F4" modified="2018-12-05" version="1">MPVASTVRTPELFNGILKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKILPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLGSKAELQGSATSKYPKALILSIDKILLILNPLSQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCD3</accession>
    <name>A0A392MCD3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">pectinesterase</fullName>
            <ecNumber evidence="4">3.1.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0005601</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the pectinesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.11" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010007341">
        <property type="protein sequence ID" value="MCH84765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCD3"/>
    <dbReference type="UniPathway" id="UPA00545">
        <property type="reaction ID" value="UER00823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030599">
        <property type="term" value="F:pectinesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042545">
        <property type="term" value="P:cell wall modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045490">
        <property type="term" value="P:pectin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000070">
        <property type="entry name" value="Pectinesterase_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31321">
        <property type="entry name" value="ACYL-COA THIOESTER HYDROLASE YBHC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31321:SF81">
        <property type="entry name" value="PECTINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01095">
        <property type="entry name" value="Pectinesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0063">Aspartyl esterase</keyword>
    <keyword evidence="5" id="KW-0134">Cell wall</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Pectinesterase catalytic" evidence="8">
        <location>
            <begin position="6"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH84765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="19621" checksum="7702E64C8B49482E" modified="2018-12-05" version="1">MSPRPGSNNDQAVALRTSGNKSAFYNCAFYGFQDTLYDHAGFHYFKECYIRGIVDFVFGNGRSLYEGCTLESIAENVGYTTAQSRPSLATETGFSITNSRVIGSGQVYLGRPWDAFSRVIFSYTNMENIVLPQGWDGTMGKDYHLLVFLARLHTTGNINVVDLEPTLLQELHGFTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCX2</accession>
    <name>A0A392MCX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Exportin-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0006196</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the exportin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008339">
        <property type="protein sequence ID" value="MCH85352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005049">
        <property type="term" value="F:nuclear export signal receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006611">
        <property type="term" value="P:protein export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044189">
        <property type="entry name" value="XPO4/7-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12596">
        <property type="entry name" value="EXPORTIN 4,7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12596:SF1">
        <property type="entry name" value="EXPORTIN-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH85352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14058" checksum="BC2C4100621E89DE" modified="2018-12-05" version="1" fragment="single">DGKMHERHLLQLLSGILEWVDPPDAVSKAIENGKSDSEMIDGCRALLAIANVTTPYVFDNLLKSLRAIGTFTFLSMLMSEVIKVLITRNTEEETWSWEARDILLDTWTALLMEVSVPIYQYKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDA9</accession>
    <name>A0A392MDA9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">23 kDa subunit of oxygen evolving system of photosystem II</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">23 kDa thylakoid membrane protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">OEC 23 kDa subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0005095</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in the regulation of photosystem II.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Plastid</location>
            <location evidence="12">Chloroplast thylakoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the PsbP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006540">
        <property type="protein sequence ID" value="MCH84264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009534">
        <property type="term" value="C:chloroplast thylakoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019898">
        <property type="term" value="C:extrinsic component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009654">
        <property type="term" value="C:photosystem II oxygen evolving complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015979">
        <property type="term" value="P:photosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1000.10">
        <property type="entry name" value="Mog1/PsbP, alpha/beta/alpha sandwich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016123">
        <property type="entry name" value="Mog1/PsbP_a/b/a-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002683">
        <property type="entry name" value="PsbP_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31407">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31407:SF6">
        <property type="entry name" value="OXYGEN-EVOLVING ENHANCER PROTEIN 2-1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01789">
        <property type="entry name" value="PsbP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55724">
        <property type="entry name" value="Mog1p/PsbP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="3" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="7" id="KW-0604">Photosystem II</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0793">Thylakoid</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="PsbP C-terminal" evidence="13">
        <location>
            <begin position="57"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00035638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00046272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH84264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="209" mass="22956" checksum="FA5D49DAC9995202" modified="2018-12-05" version="1">MFGLTVTLAESRRANVILTLAESRCHLDFVELTAEPNMDIVKFTFANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVIVQTTDKKSITDYGSPDEFLSKGGFDTNAVAVANILESSTPVIGGKQYFNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGTRKFVEDTASSFSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDY0</accession>
    <name>A0A392MDY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006197</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008340">
        <property type="protein sequence ID" value="MCH85353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010435">
        <property type="entry name" value="C5a/SBT2-like_Fn3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06280">
        <property type="entry name" value="fn3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="C5a peptidase/Subtilisin-like protease SBT2-like Fn3-like" evidence="4">
        <location>
            <begin position="78"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21529" checksum="9CE608B55ED0ADD1" modified="2018-12-05" version="1">MLAISLDLLNGGMRSSRWASTVNRVFNPRGRIIEFSLNTLRICVCFIVLYLSGPLGFFRYKDYLGFLCTTPGIDFHEIKKYTNSPCNRTMGHPYNLNTPSITVSHLVRTQVVTRTVTNVAKQETYVMTARMQPAVAIEVNPPAMTIKAGASRKFTVTLTVRSVTGTYSFGEVLMKGSRGHKVRIPVLANGYSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFQ4</accession>
    <name>A0A392MFQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Charged multivesicular body protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009574">
        <property type="protein sequence ID" value="MCH86013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.440">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017426091" evidence="1">
        <location>
            <begin position="30"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9959" checksum="67FDEFD8E346D10F" modified="2018-12-05" version="1">MATNSMKFTLITIFIFAMALSPTLPSCDAARLPYNYTRDLRIVYADDYGLEVSVGLPQPAAHAVPVKEKDGEKVDEDDLSRRLAELKARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHB0</accession>
    <name>A0A392MHB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010788">
        <property type="protein sequence ID" value="MCH86701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="23190" checksum="843587370D8E7DFF" modified="2018-12-05" version="1" fragment="single">IKMLNKLELAPCNLFKLQMKLSLKVRIFEMRDTQFVAIKMVSKIYNQAAYQRVHMCTLDLDTSNNQLEVIECKCHMVVAMDIQEATWTSTLNEIVIVDVSNNFVPRELNSTSVHSSSNTLFTTLMKMINRGNVRHAKVLIKWKALPLKHGICDCPSLRIRMFEGEDIVIGIKAQILRRLSPWTVEQGPIAEQPMKIQLKSTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHR0</accession>
    <name>A0A392MHR0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">peroxidase</fullName>
            <ecNumber evidence="4">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="24" type="ORF">A2U01_0007437</name>
    </gene>
    <organism evidence="24 25">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="24 25" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">cv. 10/8</strain>
            <tissue evidence="24">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="18">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="18">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="21">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="24">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010010557">
        <property type="protein sequence ID" value="MCH86579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00693">
        <property type="entry name" value="secretory_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.520.10:FF:000001">
        <property type="entry name" value="Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.420.10">
        <property type="entry name" value="Peroxidase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019794">
        <property type="entry name" value="Peroxidases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033905">
        <property type="entry name" value="Secretory_peroxidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31388:SF264">
        <property type="entry name" value="PEROXIDASE 59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31388">
        <property type="entry name" value="PEROXIDASE 72-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00461">
        <property type="entry name" value="PLPEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00436">
        <property type="entry name" value="PEROXIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 18" id="KW-0106">Calcium</keyword>
    <keyword evidence="13 20" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0349">Heme</keyword>
    <keyword evidence="15" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 18" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 24" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="25" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <keyword evidence="9 22" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="22">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017291308" description="peroxidase" evidence="22">
        <location>
            <begin position="23"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="23">
        <location>
            <begin position="25"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="16">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="19">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="20">
        <location>
            <begin position="35"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="disulfide bond" evidence="20">
        <location>
            <begin position="68"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="23">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="EMBL" id="MCH86579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="247" mass="26528" checksum="D9DF52AEFEA8DEA3" modified="2018-12-05" version="1">MASYYFLLFFLVAAFAISEADGKEKLSTDFYCSSCPELLSIVNNGIISAIKKETRIGASLLRLHFHDCFVNGCDASILLDDTSSFIGEKTAAANNNSARGFNVIDDIKAKVEKACPRVVSCADILALAARDSVVHLGGPSWKVGLGRRDSITASRSDANXSIPAPFLNLSALKTNFANQGLSVKDLVALSDQELFNGSSTTDNLVKKYATNNDAFFKAFAKGMVKLSSIKPLTGSKGQIRLNCRKAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIP4</accession>
    <name>A0A392MIP4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amine oxidase</fullName>
            <ecNumber evidence="1">1.4.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008240</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>L-topaquinone</name>
            <dbReference type="ChEBI" id="CHEBI:79027"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="1">Contains 1 topaquinone per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Topaquinone (TPQ) is generated by copper-dependent autoxidation of a specific tyrosyl residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the copper/topaquinone oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.-" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010012068">
        <property type="protein sequence ID" value="MCH87372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008131">
        <property type="term" value="F:primary methylamine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009308">
        <property type="term" value="P:amine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.450.40:FF:000002">
        <property type="entry name" value="Amine oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.450.40:FF:000004">
        <property type="entry name" value="Amine oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000269">
        <property type="entry name" value="Cu_amine_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016182">
        <property type="entry name" value="Cu_amine_oxidase_N-reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015800">
        <property type="entry name" value="Cu_amine_oxidase_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015802">
        <property type="entry name" value="Cu_amine_oxidase_N3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638:SF80">
        <property type="entry name" value="AMINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10638">
        <property type="entry name" value="COPPER AMINE OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02727">
        <property type="entry name" value="Cu_amine_oxidN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02728">
        <property type="entry name" value="Cu_amine_oxidN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54416">
        <property type="entry name" value="Amine oxidase N-terminal region"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0186">Copper</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0801">TPQ</keyword>
    <feature type="domain" description="Copper amine oxidase N2-terminal" evidence="2">
        <location>
            <begin position="8"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="Copper amine oxidase N3-terminal" evidence="3">
        <location>
            <begin position="133"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="213" mass="23527" checksum="3F40CF1E4FD71659" modified="2018-12-05" version="1" fragment="single">MAKAQTLHPLDPLTAAEISVAVATVRAAGATPEVRDSMRFIEVDLVEPEKQVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRKARLVVYNKKSNETSIWIVELTEVHATTRGGHHRGKVISSTIVPDVQPPMDAVEYAECEAVVKDYPPFREAMKKRGIEDMDLVMVDPWCAGYHSEGDAPSRRLAKPLFFCRTESDCPMENGYARPVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJF7</accession>
    <name>A0A392MJF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008081</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011754">
        <property type="protein sequence ID" value="MCH87215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6735" checksum="709A6B69806564A9" modified="2018-12-05" version="1">MARRKNANQSSDAHSKEDDQEVNMPRIDEVPSHEILRSDPVISQIQTSTTYSSIPYEEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJK7</accession>
    <name>A0A392MJK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011854">
        <property type="protein sequence ID" value="MCH87265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="20732" checksum="3230B6AD8EF07E18" modified="2018-12-05" version="1" fragment="single">KGEWRAIRAGRNGPFISHLMFADDLLLFGEATELQMSCVIRILNLFCRLSGQQVSAEKTSIYFSRNVSRSMHVCLSNMSGFRETSDLGRYLGVALIGRSHKRTNFQYIIDQVRTKLSRWKANQLSFAGRVTLVKSVIEAIPIYPMMTTVIPKQCLDEIHRLQRSFIWGDTMEKRKYHAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKF1</accession>
    <name>A0A392MKF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NAC transcription factor 25-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0008370</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012322">
        <property type="protein sequence ID" value="MCH87499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048316">
        <property type="term" value="P:seed development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="2.170.150.80:FF:000005">
        <property type="entry name" value="NAC transcription factor 56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.150.80">
        <property type="entry name" value="NAC domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003441">
        <property type="entry name" value="NAC-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036093">
        <property type="entry name" value="NAC_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31719">
        <property type="entry name" value="NAC TRANSCRIPTION FACTOR 56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31719:SF241">
        <property type="entry name" value="NAC TRANSCRIPTION FACTOR 56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02365">
        <property type="entry name" value="NAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101941">
        <property type="entry name" value="NAC domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51005">
        <property type="entry name" value="NAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="NAC" evidence="7">
        <location>
            <begin position="6"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="142"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH87499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21819" checksum="B18AA7BB8C4F8B81" modified="2018-12-05" version="1" fragment="single">SQHPHLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLITDHNNINNNHSYNASSKTPLLPSDHPPNNNKKNSLRPLLGRSCGDRTVVLPTKFSVNHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKM1</accession>
    <name>A0A392MKM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007674</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010988">
        <property type="protein sequence ID" value="MCH86814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10868" checksum="667FA267E221DBC8" modified="2018-12-05" version="1" fragment="single">KPRSHTSTATMDCVGLLYYILANLQIDIVRVIANEMKGIAESGIRSETKPTCVLAYPGLIMGLCMDASMTIPSQVSEIIASPINDAYISRYCKGKRNRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKP3</accession>
    <name>A0A392MKP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uridine-cytidine kinase C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012659">
        <property type="protein sequence ID" value="MCH87655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd02028">
        <property type="entry name" value="UMPK_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033469">
        <property type="entry name" value="CYTH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023577">
        <property type="entry name" value="CYTH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10285">
        <property type="entry name" value="URIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01928">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55154">
        <property type="entry name" value="CYTH-like phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51707">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CYTH" evidence="1">
        <location>
            <begin position="140"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="269" mass="30960" checksum="5A0C0E618B1331DB" modified="2018-12-05" version="1" fragment="single">MKEVNPRLTDYETLLRNVHDLKAGKPVEVPVYDFKSSSRTGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHVKITNKFNPFFGFQSPTYILKSTRNVTADQIKAVISQDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHVLSDDRVCVKLDWLEQLNRHYVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKY1</accession>
    <name>A0A392MKY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Regulator of telomere elongation helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013348">
        <property type="protein sequence ID" value="MCH88021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9840" checksum="EFA3B2E4AFD408AE" modified="2018-12-05" version="1" fragment="single">MSSSEHFMDKFHMEKLLSPLTTPVAPDGTLKASSSLDTKNGYTSFVGGILPANCSSLSSDHRMIVGCDSSSDKRETVLHKRRTVLSQEHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML22</accession>
    <name>A0A392ML22_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">H(+)-exporting diphosphatase</fullName>
            <ecNumber evidence="2">7.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0009073</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.3.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010013681">
        <property type="protein sequence ID" value="MCH88190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009678">
        <property type="term" value="F:diphosphate hydrolysis-driven proton transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004131">
        <property type="entry name" value="PPase-energised_H-pump"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31998">
        <property type="entry name" value="K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03030">
        <property type="entry name" value="H_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="61"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="145"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="173"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH88190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="339" mass="35239" checksum="320ECED22D460EAF" modified="2018-12-05" version="1" fragment="single">WLCRQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGVAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFIGLLVGSMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVTISTDASIKEMIPPGALIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMT8</accession>
    <name>A0A392MMT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009719</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014926">
        <property type="protein sequence ID" value="MCH88826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2934" checksum="C6849FD0ECF15373" modified="2018-12-05" version="1" fragment="single">VDASAISQILKVTMANSVPETRSNVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMY1</accession>
    <name>A0A392MMY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014765">
        <property type="protein sequence ID" value="MCH88751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="22652" checksum="F4A3197423C5DF0F" modified="2018-12-05" version="1" fragment="single">FLEAPFSRAFRMRLRVRVEETCLRGFVDKDCFEHLLRFLEARRGLRSTWGVLDKPFRFLLPRVKATSVALECLLNSFESRGGFPTVGFAHPFICILIRFEPLDCLYQDPWIKAVVRMKVASLNMVPFKLSDPFAASTTVISCYLFFNQNALVKDSDARVDLWEPYSLDFIRIFRFPSFGYPFAVVLVDDDPRPFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP33</accession>
    <name>A0A392MP33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009758</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014999">
        <property type="protein sequence ID" value="MCH88865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.430.20">
        <property type="entry name" value="Gnk2 domain, C-X8-C-X2-C motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002902">
        <property type="entry name" value="GNK2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038408">
        <property type="entry name" value="GNK2_sf"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51473">
        <property type="entry name" value="GNK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Gnk2-homologous" evidence="3">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7716" checksum="EA055B1B34F36A6E" modified="2018-12-05" version="1" fragment="single">MQGTTVATANDTDIEDDPSLVSQGIPFMSGVAAAASVNSFMFHTEVLNINQSEKRYGMAQCTRDISKKECR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPP1</accession>
    <name>A0A392MPP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BAH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014490">
        <property type="protein sequence ID" value="MCH88608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001025">
        <property type="entry name" value="BAH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043151">
        <property type="entry name" value="BAH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46548">
        <property type="entry name" value="BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46548:SF2">
        <property type="entry name" value="BAH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01426">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00439">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51038">
        <property type="entry name" value="BAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BAH" evidence="2">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="163"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="270" mass="30316" checksum="EF344604DE87A5C8" modified="2018-12-05" version="1" fragment="single">DGRKIRVGDCALFKPPQDSPPFIGIIRKLTFDKEENPSLEVNWFYRPADLKLNKGIVVEAAPNEVFYSFHKDEIHAASLLHPCKVAFLRKSVELPSGISAFVCRRVYDIDNNCLRWLTDKDYINEQQEEVYKLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSSSDNIQSSSSFGVQGKGKKRERGDQGSDSSKKERLFKVEDGDSGQFRPESMLRSEIAKITDKGGFVDFEGVEKFIQLMQPDSADKKIDLAGRIMLVDVISLTER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ20</accession>
    <name>A0A392MQ20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter B family member 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0009962</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015401">
        <property type="protein sequence ID" value="MCH89069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222:SF62">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY MEMBER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7945" checksum="3D1CE0D30EEFDBEE" modified="2018-12-05" version="1" fragment="single">VGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKIRKEYVKAGEIAEEDRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ40</accession>
    <name>A0A392MQ40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MATE efflux family protein FRD3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010487</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016467">
        <property type="protein sequence ID" value="MCH89587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015137">
        <property type="term" value="F:citrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044644">
        <property type="entry name" value="DinF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893:SF19">
        <property type="entry name" value="PROTEIN DETOXIFICATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893">
        <property type="entry name" value="PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017207645" evidence="7">
        <location>
            <begin position="19"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="76"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="104"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="12953" checksum="6C046E0A7C96074A" modified="2018-12-05" version="1" fragment="single">MLICLGAVELAAAGVSIALFNQASKITIFPLVSITTSFVAEEDTIKRMQNEAENDKITKLRTEVMPKDNVLEDIEKGTPKENIKAPNGSMVEHNETNGTVARSCGHEDDKKHVDKTNGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ94</accession>
    <name>A0A392MQ94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016649">
        <property type="protein sequence ID" value="MCH89680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQ94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6892" checksum="12691748D366A399" modified="2018-12-05" version="1" fragment="single">MEAEQIIHYGAKGHCSLKQQDRHKALAPIWTTAVRRAGAGHHTTTMFGYIGQARFGWKGEAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRN8</accession>
    <name>A0A392MRN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017604">
        <property type="protein sequence ID" value="MCH90111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7492" checksum="137CA6B218B218C8" modified="2018-12-05" version="1">MASTTLDHNAGEWKKPAVGWLKYNVDARFFARARVTSMGACFCNPTCNLVAGLISWRQPMLSTLEGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSX2</accession>
    <name>A0A392MSX2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">indole-3-pyruvate monooxygenase</fullName>
            <ecNumber evidence="9">1.14.13.168</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0011578</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>indole-3-pyruvate + NADPH + O2 + H(+) = (indol-3-yl)acetate + CO2 + NADP(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34331"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17640"/>
            <dbReference type="ChEBI" id="CHEBI:30854"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.14.13.168"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Plant hormone metabolism; auxin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.14.13.168" evidence="9"/>
    <dbReference type="EMBL" id="LXQA010018790">
        <property type="protein sequence ID" value="MCH90656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103075">
        <property type="term" value="F:indole-3-pyruvate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009851">
        <property type="term" value="P:auxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050982">
        <property type="entry name" value="Auxin_biosynth/cation_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43539">
        <property type="entry name" value="FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43539:SF38">
        <property type="entry name" value="INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13738">
        <property type="entry name" value="Pyr_redox_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00469">
        <property type="entry name" value="PNDRDTASEII"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0073">Auxin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00039148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH90656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="219" mass="24316" checksum="27708C70119C8D37" modified="2018-12-05" version="1" fragment="single">MNNNSNKNSTSSSDRCLWIPGPLIVGAGPSGLAVAAYLKQKGVPSLILERSNCIASLWKLKTYDRLRLHLPKQVCELPLMKFPCGFPTYPTKQQFIEYLESYSEKFDIRPWFNETVMHAEFDDALGFWRVRSEGKAGMVTEFVCRWLIVATGENAEAVMPEIEGVGEFGGSIKHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDAAPSIVVRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTB4</accession>
    <name>A0A392MTB4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein BZR1 homolog</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Protein BRASSINAZOLE-RESISTANT 1 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0011703</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Functions in brassinosteroid signaling. May function as transcriptional repressor.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the BZR/LAT61 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019042">
        <property type="protein sequence ID" value="MCH90780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009742">
        <property type="term" value="P:brassinosteroid mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008540">
        <property type="entry name" value="BES1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033264">
        <property type="entry name" value="BZR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31506">
        <property type="entry name" value="BES1/BZR1 HOMOLOG PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31506:SF22">
        <property type="entry name" value="PROTEIN BRASSINAZOLE-RESISTANT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05687">
        <property type="entry name" value="BES1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1070">Brassinosteroid signaling pathway</keyword>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BES1/BZR1 plant transcription factor N-terminal" evidence="7">
        <location>
            <begin position="18"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="6">
        <location>
            <begin position="20"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU369040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="25836" checksum="A922E2DE5790F8DD" modified="2018-12-05" version="1">MKTEQGTRAATPGDGAGNRNNPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRMDANNSASNLFPYGRTVFPNMCLPPLRISNSAPVTPPISSPTSRNPKPMIPTWESIAKASASSFNHPLFAASAPTSPSHRHLYAPPTIPECDESDTSTVESGQWLNFQAFANAAKSVSPTLNFMKPVINEQHNMVPDTDSRMQEMRISEPEFGVQVVKPWVGERIHEVGLDDLELTLGNGKAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU46</accession>
    <name>A0A392MU46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Niemann-Pick C1 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010716</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016963">
        <property type="protein sequence ID" value="MCH89814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032934">
        <property type="term" value="F:sterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015918">
        <property type="term" value="P:sterol transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727:SF2">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9332" checksum="EFC6F8AE69713485" modified="2018-12-05" version="1" fragment="single">SESTHTNQLCSISQCNSDSLLNEISKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQKNCETAKRNALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUI9</accession>
    <name>A0A392MUI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017302">
        <property type="protein sequence ID" value="MCH89964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6870" checksum="0932BF1DA3948653" modified="2018-12-05" version="1" fragment="single">MWTCLLSKRKELFEILKRSLSEQRREVASLLSAFELLGENWREVATISLSENQRDSASI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV03</accession>
    <name>A0A392MV03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transmembrane and coiled-coil domain-containing protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0012254</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020180">
        <property type="protein sequence ID" value="MCH91327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007941">
        <property type="entry name" value="DUF726"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17920:SF3">
        <property type="entry name" value="TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17920">
        <property type="entry name" value="TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="21329" checksum="C51765E62F853F94" modified="2018-12-05" version="1">MSMLQFLRLLSEEYDDDNAKRLDQELALSEAVDALVLSLEKNSESSRSKREKSREYEHQCREKFSTADVQPNSEKVDMHLESQQEEDNLFFECEGDPGSSNSKTDEGPDEEVMKLSYQRKVTVLYELLAACLSDLGEKDTKYTRRRKGYDARHRVALRLLATWLDIKWTKMVCQINLFISNFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVB0</accession>
    <name>A0A392MVB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin-protein ligase RBBP6-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018725">
        <property type="protein sequence ID" value="MCH90628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033489">
        <property type="entry name" value="RBBP6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15439:SF0">
        <property type="entry name" value="CELL DIVISION CYCLE AND APOPTOSIS REGULATOR PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15439">
        <property type="entry name" value="RETINOBLASTOMA-BINDING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4389" checksum="5859412648515325" modified="2018-12-05" version="1" fragment="single">MPSTRSVGDLPPELHCPLCSNVMKDAVLTSKCCFKSFCDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW02</accession>
    <name>A0A392MW02_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Leucoanthocyanidin dioxygenase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0012054</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">10/8</strain>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019758">
        <property type="protein sequence ID" value="MCH91129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010083960">
        <property type="protein sequence ID" value="MCI12382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050295">
        <property type="entry name" value="Plant_2OG-oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47991">
        <property type="entry name" value="OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0847">Vitamin C</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="4">
        <location>
            <begin position="25"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH91129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10433" checksum="89E732AA872ADAB6" modified="2018-12-05" version="1" fragment="single">MLELMSTNLGLKEDYLMNAFGGENELGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTILLPDDFVSGLQVRKGNDWITVRPVPNAFIINIGDQIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWF4</accession>
    <name>A0A392MWF4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011962</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019549">
        <property type="protein sequence ID" value="MCH91038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF11">
        <property type="entry name" value="ELEMENT PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="3">
        <location>
            <begin position="53"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="416"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="321"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="273"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="423"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="451" mass="51852" checksum="4A7C6116B2C73C90" modified="2018-12-05" version="1" fragment="single">VSFDIKNTVLSALKENPYSGSESQCPNLHLSHFYEACDYTDPPGVSESDKRLRLFKHSLSGRAKDWLDTIPSGTIATWRQLERKFLDRYFPIHKFLERRAEISNFEQLDNETLYDAWERFKVCLKRCPNHGFDGHSQMQMFTQGLRPQTRMILDASAGGSLKNRDGVEVRELLESMAQNEYRAQNDRGAKKKGGLLELDAQSALLAQQKLMSSQLESMMKLISTSQPTNSQVSKVEQVRCDFCLQDHPNGGCFPEGSEEARYLANFRKSYPNNNSGWGNQGQASNQAQQRPPSRLEETLSNFIQMTQGNFEAMKTSQEVSNKNHEASIKNLEVQMGQLSRQFSSLQNSGGFGGNTRDNPRNETCKGIKLWSRELPDEETVEKNGKRKLIEREEVLDEESEFEDEEEWERELERMYMEESNASRVEEKSTFKEESVEKQSEIKEKDEKKSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY99</accession>
    <name>A0A392MY99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Apyrase 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0012597</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GDA1/CD39 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020913">
        <property type="protein sequence ID" value="MCH91668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017110">
        <property type="term" value="F:nucleoside diphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009134">
        <property type="term" value="P:nucleoside diphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd24043">
        <property type="entry name" value="ASKHA_NBD_AtAPY7-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.150">
        <property type="entry name" value="Exopolyphosphatase. Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000407">
        <property type="entry name" value="GDA1_CD39_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11782">
        <property type="entry name" value="ADENOSINE/GUANOSINE DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11782:SF125">
        <property type="entry name" value="APYRASE 7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01150">
        <property type="entry name" value="GDA1_CD39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="120"/>
            <end position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600407-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600407-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH91668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="399" mass="44108" checksum="2F392ABE2E110159" modified="2018-12-05" version="1" fragment="single">METEPGIDKLVYNVSGLRGALKPLVRWAKKQIPVHAHKSTSLYLYATAGVRRLPRKESKWLLDNAWSVIKDSPFLCKKDWIKIISGTEEAYFGWISLNYHSRILGVSPRKATYGALDLGGSSLQVTFESDQQVNSETSLYVRIGSVNHHLTAYSLEGYGLNEAFGKSVAHLFKKEFGSSAADADMAGKDRELKHPCLQSGYKARYVCPRCGKGGSLSVGEKRLSKQGGSGTPLMLVGAPNWQQCSALAKVVVNLSEWSNLSPGLDCXMTPCALQDNLPRPYGHFYVISGFYVVYRFFNLSSEATLDDVLKKGEDFCEKRWDVAKKSVVPQPFIEQYCFRAPYIASLLREGLHINDNQISVGSGSITWTLGVALLEAGKAYSTGFGLRNFGVLQMKINPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZB2</accession>
    <name>A0A392MZB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">D-glycerate 3-kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023688">
        <property type="protein sequence ID" value="MCH92880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="22874" checksum="E59FF96B5ADD6155" modified="2018-12-05" version="1" fragment="single">PLLDKIGLTSENVXESIDKWLSYGLQLCRLFQLNELFLTEPQKVRLYHYYIPVFLWCESEIARHRSQFKDEEDIPPLVIGFSAPQGCGKTTLVFALDYLFQMIGRKSATISIDDFYLTAEGQSKLREANPGNALLEFRGNAGSHDLPFSVETLTSLTKMSREGIKMKLPRYDKSAFGGRGDRADPSTWPEIEGPLTVRKYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZG6</accession>
    <name>A0A392MZG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021892">
        <property type="protein sequence ID" value="MCH92098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017217514" evidence="1">
        <location>
            <begin position="23"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9289" checksum="9F727C3974D38879" modified="2018-12-05" version="1">MSLFTVLLIIFLFVSINQRADSCTGSACEVNIQELLLIGIINERLVKLGNQNGNSLEKQVLQYKNAKLTASDSDKEEEACSVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZI0</accession>
    <name>A0A392MZI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome c oxidase subunit Vb</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023814">
        <property type="protein sequence ID" value="MCH92937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7171" checksum="77CC204E8E6DD845" modified="2018-12-05" version="1" fragment="single">MIMWRRLFSSPHIKTLAHSHFHPPSAVAGLRSLDITSHFATQSDGSIDKIVENGDVDSDNVTTQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZW1</accession>
    <name>A0A392MZW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Monothiol glutaredoxin-S2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0007283</name>
        <name evidence="7" type="ORF">A2U01_0010080</name>
        <name evidence="8" type="ORF">A2U01_0012724</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">10/8</strain>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutaredoxin family. CC-type subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010297">
        <property type="protein sequence ID" value="MCH86426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010015657">
        <property type="protein sequence ID" value="MCH89187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010021177">
        <property type="protein sequence ID" value="MCH91794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd03419">
        <property type="entry name" value="GRX_GRXh_1_2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011905">
        <property type="entry name" value="GlrX-like_pln_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02189">
        <property type="entry name" value="GlrX-like_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10168">
        <property type="entry name" value="GLUTAREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51354">
        <property type="entry name" value="GLUTAREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="5">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH86426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH91794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8650" checksum="A28ACAC3B19A60AE" modified="2018-12-05" version="1">MCHTIKTLLSDFGVNPEVHELDEISGGRDIEQALLRLGCNPSVPAVFIGGELVGGANEVMSLHLNRTLIPMLRRAGALWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0C6</accession>
    <name>A0A392N0C6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022631">
        <property type="protein sequence ID" value="MCH92408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18593" checksum="53D104E16FFBA5BD" modified="2018-12-05" version="1">MISECQSAFLPNRQILDGVLVVNELIDLAKRRKDKCMMFKVDFERAYDTSSMSVLVNGSPTDEFIVGKGLRQGDPLSPFLFLIAAEGLTKLIQRAVDIGSFLGYKVSNDIQFHILQFADDTVIVGEGLKVNFFKSKLYGINLEEHFMAAASAFLHCGVDFIPFRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4X8</accession>
    <name>A0A392N4X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Replication protein A 70 kDa dna-binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0014496</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025194">
        <property type="protein sequence ID" value="MCH93544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04481">
        <property type="entry name" value="RPA1_DBD_B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031657">
        <property type="entry name" value="REPA_OB_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16900">
        <property type="entry name" value="REPA_OB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Replication protein A OB" evidence="2">
        <location>
            <begin position="27"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH93544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11579" checksum="5F4EEF91E9B4B3A0" modified="2018-12-05" version="1" fragment="single">VQRLSNVDVVKSPFQFVPISDVVGGSYDTDYLVDVIGVLTGVGSEREITNQNGSTTKLNVIALEADGHKIQCTLFGPYVDELNTFIAAGDYNNAVVIVQLAKAKTFQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5A1</accession>
    <name>A0A392N5A1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Autophagy-related protein 9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0015949</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Phospholipid scramblase involved in autophagy. Cycles between the preautophagosomal structure/phagophore assembly site (PAS) and the cytoplasmic vesicle pool and supplies membrane for the growing autophagosome. Lipid scramblase activity plays a key role in preautophagosomal structure/phagophore assembly by distributing the phospholipids that arrive through ATG2 from the cytoplasmic to the luminal leaflet of the bilayer, thereby driving autophagosomal membrane expansion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Preautophagosomal structure membrane</location>
            <topology evidence="1 9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ATG9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028639">
        <property type="protein sequence ID" value="MCH94977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5A1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005776">
        <property type="term" value="C:autophagosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034045">
        <property type="term" value="C:phagophore assembly site membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000422">
        <property type="term" value="P:autophagy of mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034727">
        <property type="term" value="P:piecemeal microautophagy of the nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034497">
        <property type="term" value="P:protein localization to phagophore assembly site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061709">
        <property type="term" value="P:reticulophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007241">
        <property type="entry name" value="Autophagy-rel_prot_9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13038">
        <property type="entry name" value="APG9 AUTOPHAGY 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13038:SF18">
        <property type="entry name" value="AUTOPHAGY-RELATED PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04109">
        <property type="entry name" value="ATG9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0072">Autophagy</keyword>
    <keyword evidence="7 9" id="KW-0445">Lipid transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="107"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH94977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15310" checksum="D44546D89A9B0FAE" modified="2018-12-05" version="1" fragment="single">MASIFLTPYLLLFIVPKRVDDILQYIADFTVNVEGVGHVCSFSTFNFQEHGNTHYGSPYSAPRNRRSSQGKMEKSLLSFQSSYPSWEPNAQGKQFLLNLRTFKEKKLSVHGNRHGSSPPRMWRGSPNMAGNGDRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6U2</accession>
    <name>A0A392N6U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0016499</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030022">
        <property type="protein sequence ID" value="MCH95520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000545">
        <property type="entry name" value="Endoplasmic reticulum chaperone BiP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.640.10:FF:000002">
        <property type="entry name" value="Heat shock 70 kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="entry name" value="Substrate Binding Domain Of DNAk, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="HEAT SHOCK PROTEIN 70KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00301">
        <property type="entry name" value="HEATSHOCK70"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="332" mass="36557" checksum="647BD4D8AE91E608" modified="2018-12-05" version="1" fragment="single">MREIAEKFLESSVKNAVVTVPAYFNDSQRKATKDAGAIAGLNVMRIINEPTAAALAYGLQKRANNVEKRNVFIFDLGGGTFDVSLLTLKDDSFEVKATSGDTHLGGEDFDNRMVKHLVKEFERKNKVDISGNPKALRRLRTASEKAKRTLSFDMEAIIDIDAIYQGIDFCLSVTRAKFEQLNMDLFEKCLETVKSCFSDAKMDKSSIDDVVLVGGSSRIPKVQQLLQEFFEGKDLYSSINPDEAVAYGAAVQAALLSEDVKNVPNLVLQDVTPLSLGTAVVGDVMSVVIPRNTSIPVKKTQNYLTVKDNQSRVAIKVYEGERMIASENNLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9C8</accession>
    <name>A0A392N9C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Catalytic/pyridoxal phosphate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017413</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032297">
        <property type="protein sequence ID" value="MCH96427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14237">
        <property type="entry name" value="MOLYBDOPTERIN COFACTOR SULFURASE MOSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14237:SF14">
        <property type="entry name" value="PYRIDOXAL PHOSPHATE (PLP)-DEPENDENT TRANSFERASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="329" mass="37675" checksum="D32D2223562E76DE" modified="2018-12-05" version="1" fragment="single">MHLSLWKPISHCASMLLDKKSRRKGESTADIKRNPSMLRKLQENKLREALEEASEDGVLSKSQDMEPDIVGNQDESLGRSRSLARLNAQREFLRATALAAEREFDSEEEILSLQEAFSMFLAMYPKYLSSEKVDQLRSDEYSHCPPKVCLDYCGFGLFSFIQTIHYWESCTFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDYLNIPESEYGLVFTVSRGSAFKLLAESYPFQTNKKLLTMFDHDSQSVNWMAQCARSKGAKVHSAWFKWPTLKLCSTDLRKQISNKKKRKKDSATGLFVFPVQSRVTGAKYSYQWMALAQQNNWH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA33</accession>
    <name>A0A392NA33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017519</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032563">
        <property type="protein sequence ID" value="MCH96532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="153"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="58"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22760" checksum="8D1FAECBA3B9D0C0" modified="2018-12-05" version="1" fragment="single">MTCTHLFTINGPIPPYKLFPLTLVCHLIYLTLHLSHPSDHIILLPPPPPQHPLPPSTDTPDTSSIPTPLAQLAPPIRTMATRSMRGIYKPRKLFNLSITIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNNTWDLVPRPCDVNIIRCDGRSQIAGVDCAETFSPVVKPATIRTVLTIALSKSWPIHQLDVQNAFLHGDLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAG6</accession>
    <name>A0A392NAG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033361">
        <property type="protein sequence ID" value="MCH96820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="205"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="232" mass="26226" checksum="98B77919788FBC08" modified="2018-12-05" version="1" fragment="single">ALARLIDVDALERPYPLPRCFSSRDFMEKRPPMVADVEKAVILDMGPAAREVEKLKARNEKLEAKALKLESELIDLRGKPENFAAQVKELRETRDALDRAKKDLGESEASRAEERKNFEEELGKLQSTKAPAEGEPESVRGLTTRAQLIERIQHLGEVVFKAAQHSWENALAQIKVANPGLEFSTEGMGMLRKVVDRHIIIPDQYRQIEADDEEEEELEEEDNGEEGHGESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCF0</accession>
    <name>A0A392NCF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017717</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033072">
        <property type="protein sequence ID" value="MCH96728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="376" mass="40641" checksum="751E1A8E6C48AC59" modified="2018-12-05" version="1" fragment="single">LSRFGRNRSKAPVAQGKASQVNRRFTGDSATKTQADKSFRTALVGETSAPVQLATVTGVETNEILILETEVVEEFLQTLIGSYVGCMRRGVEVKALRLKLFMVGLHSVKLVAMGGSLVLFSRDSNVDVGAPITNVDWWDGMLEDIKPWTPNQVCTKRKLWVRLFGVPLHAWGINTFQRIANRCGEFLGLDSGMENRNRFDMARVQIESSLLGYIDFVIKLRIQGAVFKVRVVEEDVRLRELDSLYLEDQLGWSVAASSCHSGGGGPAVAMLEGLDGDDSDSGASETCQQGYAQKMQGASESTGGICILEKSVGKPLDNTTLCTSIPSIAEKVMGTEEVIVSGKSPGAQSPVLLVDQGRSGQLDVVPPIGCEDDITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDE4</accession>
    <name>A0A392NDE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0018884</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036164">
        <property type="protein sequence ID" value="MCH97887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001019">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase B120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002:SF1104">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 27-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002">
        <property type="entry name" value="RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH97887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16262" checksum="0E1AAA39BE7B505A" modified="2018-12-05" version="1" fragment="single">MNLFLIRALITSFSVDQTKRAHLNWEIRYKIIAGTARGILYLHEDSRLTIIHRDLKASNILLDEEMNPKIADFGMARLFGVGQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGYKNSCIGESMEYLLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDL1</accession>
    <name>A0A392NDL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myrcene synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0018917</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036259">
        <property type="protein sequence ID" value="MCH97920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010333">
        <property type="term" value="F:terpene synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.130">
        <property type="entry name" value="Terpene synthase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001906">
        <property type="entry name" value="Terpene_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036965">
        <property type="entry name" value="Terpene_synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050148">
        <property type="entry name" value="Terpene_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31225">
        <property type="entry name" value="OS04G0344100 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31225:SF137">
        <property type="entry name" value="TERPENE SYNTHASE 11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01397">
        <property type="entry name" value="Terpene_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terpene synthase N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="20773" checksum="90EE5EE278E4C554" modified="2018-12-05" version="1">MKMIDSIQGLGIGHHLKDEINVQLGRICDWDASKDLFATSLQFRLLRHNGWSTCSDVFRKFLDKSGNFKESLTKDIKGMLSLYEASYLGTEDEEVLKKAMEFSKARLNDLRPYLSPEVSRNIGKALTLPKHLRMVRLEARNYMEEYSKSSYQIPALLELAKLDSDMIQSLHQRELAEICR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEQ8</accession>
    <name>A0A392NEQ8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exocyst subunit Exo70 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0019349</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Component of the exocyst complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the EXO70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037357">
        <property type="protein sequence ID" value="MCH98347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005546">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.170">
        <property type="entry name" value="Exocyst complex component Exo70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004140">
        <property type="entry name" value="Exo70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046364">
        <property type="entry name" value="Exo70_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542">
        <property type="entry name" value="EXOCYST COMPLEX PROTEIN EXO70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12542:SF7">
        <property type="entry name" value="EXOCYST SUBUNIT EXO70 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03081">
        <property type="entry name" value="Exo70_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst complex subunit Exo70 C-terminal" evidence="5">
        <location>
            <begin position="126"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU365026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH98347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="303" mass="33724" checksum="3513C5810404CF53" modified="2018-12-05" version="1" fragment="single">SKRLNEDEVSYGGDNDDEDDDKLLRFDSTCSVATTATTTSSYRSTSSIREIDLXXXXXXPSEAVSDLRCIADRMISSGYLRECIQVYGSVRKSAVDSSFKKLGVEKLSIGDVQRLDWEQLETKIRRWIRAAKVCVRTLFASEKRLCEQIFDGIGTSIDDACFMETVKGPAIQLFNFAEAISISRRSPEKLFKILDLHDALMDLIPDIDAVFDSKSSESIRVQAAEILSRLAEAARGILSEFENAVLKEPSKVPVPGGTIHPLTRNSGDPLXXXXXXDEVEEKPPLAIHLIWIIVILQFNLDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFB2</accession>
    <name>A0A392NFB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cellulose synthase A catalytic subunit 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0018237</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034440">
        <property type="protein sequence ID" value="MCH97244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016760">
        <property type="term" value="F:cellulose synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030244">
        <property type="term" value="P:cellulose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005150">
        <property type="entry name" value="Cellulose_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13301">
        <property type="entry name" value="X-BOX TRANSCRIPTION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03552">
        <property type="entry name" value="Cellulose_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH97244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26645" checksum="72B32DD46639050D" modified="2018-12-05" version="1" fragment="single">INMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPKWCCFCCGSRKTKSKKKSGTSGRSGLFSRFYKKKKMGGKDYVRKGSGSMFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMENGGLPEGTNTQSLVKEAIHNISCGYEEKTEWGKEFTDKWTRHSMITPVIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFZ8</accession>
    <name>A0A392NFZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative IMP dehydrogenase/GMP reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019473</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037683">
        <property type="protein sequence ID" value="MCH98471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010073">
        <property type="term" value="P:meristem maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044824">
        <property type="entry name" value="MAIN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033:SF8">
        <property type="entry name" value="PROTEIN MAINTENANCE OF MERISTEMS-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="2">
        <location>
            <begin position="171"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="54"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="275" mass="30677" checksum="66D9C7AA3BEDC48C" modified="2018-12-05" version="1" fragment="single">MEETVGRVRQGRVTRGHSSARREAGAAAVGRRKRGRNRQPTPPPMVQESHDNEAGSSAASGSQRGSRGAQVQEAGPEVAEEGQHVVVEAVQQQEGYGGGPTDMSLLHAYHKHRAIPIWDALNPEDAVVKHTMRSVPNGRKVINLPKFPRHVEWFWDAIHATGLEPLTRTNYGIIDHGLMTAFADRWHPETHTFHLPIGEVGITLDDVQCLLHLPITGPFLNHEKMQKYVAVDLVHRNLGIDETAVWKMFEKTGAHIKYKDLKNVYEKSKEAIEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH28</accession>
    <name>A0A392NH28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Small subunit processome component 20-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037813">
        <property type="protein sequence ID" value="MCH98519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030686">
        <property type="term" value="C:90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052575">
        <property type="entry name" value="SSU_processome_comp_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011430">
        <property type="entry name" value="UTP20_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17695">
        <property type="entry name" value="SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17695:SF11">
        <property type="entry name" value="SMALL SUBUNIT PROCESSOME COMPONENT 20 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07539">
        <property type="entry name" value="UTP20_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="U3 small nucleolar RNA-associated protein 20 N-terminal" evidence="1">
        <location>
            <begin position="2"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21409" checksum="65E23F0495ECA0DD" modified="2018-12-05" version="1">MIEECHRAYLVPLVIRLLMPKVRKLKGLASRKKASICHRKAILSFIAGLDITELPLFFALLIKPLQIVEKTDGPANLFWTLPISCSSEFQASSLLEYFTLDNIATLSWKKKYGFLHVIEDIVGVFDELHIRPFLDLLVGCVVRVLESCTSSLDNVKLDGLSSDQHNSSTNSNSLGEERVPENQILVMVSSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKT0</accession>
    <name>A0A392NKT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043400">
        <property type="protein sequence ID" value="MCI00497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="24274" checksum="968E12056B284026" modified="2018-12-05" version="1" fragment="single">MISTLLRVNGDFEYSATNTPLRVLRDEMHTFTQLLFLLVLYNIQPNTHTSDGTTNVMGLIYYIQEGLEIDLAGIISRWMKEITLSGHPDKTLRSSKVKAQSPLGFPCLIMGLCTANRITIPQIGSEEIGVINDDYVDRHCKPNKKKKAAQPPAQPPVFAPTDPNFQNFYNYICDQNDAGFRAMTAVHESIYRSQTGQTVMTPPEFLTHVAWPGDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLB8</accession>
    <name>A0A392NLB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042451">
        <property type="protein sequence ID" value="MCI00184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10745" checksum="230DBE203450E3F6" modified="2018-12-05" version="1" fragment="single">DDDEQTLEEDEALITKEERQEELAALHNEMDLPIEELLKRYAGDKGELAKHXXXXXXXXXGGKVVRTGDAVGQEELLSGHGYNMQKMEIIYLSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTP6</accession>
    <name>A0A392NTP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0023808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050132">
        <property type="protein sequence ID" value="MCI02774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI02774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20687" checksum="3FAB7AF8D40BDF74" modified="2018-12-05" version="1">MLQNSTFIALIPKIDNSLVGSLYKILAKVLANRLRLVIGSVISESQTAFVRDRQILDGILIVNEVVDEARRSKKELMLFKVDFEKAYDSVDWGYLDVVMGRISFPTLWRKWIKECVCTATALVLVNGSPTEEFPLERGLGQGGPLSPFLFLLAAEGLNVLIIASMYMTRLRFYTFSSPMIRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXD0</accession>
    <name>A0A392NXD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053478">
        <property type="protein sequence ID" value="MCI03849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="10174" checksum="6CFE8C843F5F8150" modified="2018-12-05" version="1">MVPCDELIREEIVDGRCDLEECKKFMVGPTGIDERRWRSLDLEIEVGVIVIIMFRRVEEDELRVCGGRCCYCLHLQQKKRNEEVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXF9</accession>
    <name>A0A392NXF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sister chromatid cohesion PDS5-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0024827</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053269">
        <property type="protein sequence ID" value="MCI03786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20404">
        <property type="entry name" value="Tudor_Agenet_AtEML-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039776">
        <property type="entry name" value="Pds5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663">
        <property type="entry name" value="ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12663:SF69">
        <property type="entry name" value="SISTER CHROMATID COHESION PROTEIN PDS5 HOMOLOG E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI03786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13676" checksum="C3DFA41ED2A9F2BB" modified="2018-12-05" version="1" fragment="single">MFFRYYDGVVDAYDHVKGKHKVLYXDGIEEQLNLKKHRWELVDVNVLPDEAPEPQELGNSLVGKRIKVWWPLDQTYYDGVVNAYDHVKGKHKVLYDDGIEEQLNLKKHRWELPDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ28</accession>
    <name>A0A392NZ28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0026102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057396">
        <property type="protein sequence ID" value="MCI05053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZ28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11099" checksum="B72120C8BBE60B3E" modified="2018-12-05" version="1" fragment="single">TKDQSVTINDDNGDKSNLAATEKLKNMSLEQTEAKVQQLQLKKVQQLWLHNDYLCKNNHIINGLEDDLYDYYSSYKSARDVWEALKKYNTEEVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ49</accession>
    <name>A0A392NZ49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025587</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055708">
        <property type="protein sequence ID" value="MCI04540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="221"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="240" mass="26813" checksum="A1F9258D26EB62E4" modified="2018-12-05" version="1" fragment="single">MILILCIAHGIGVTCWLILNSVSESIAQSIVFMENAVDAWIDLKEXXXXXXXXXXXXXXXXXXXXXXXSRSVTDFYSALKILWEELELYIPIPTCTCRSKCSCEAMRSARRNHTLLYAVRFLSGLNDSFAMVKSQILLMDPLPPMNKIFSMVLQHERQGNFTYPEESQALVNAVDSQRFKGKGYGSNKGGSRVCTHCGKTNHIVDNCYVKHGFPPHMQKKYANSTSTSDQVVMDPSSSGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZQ2</accession>
    <name>A0A392NZQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055861">
        <property type="protein sequence ID" value="MCI04586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017294222" evidence="1">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5102" checksum="5D24BC31336112D0" modified="2018-12-05" version="1" fragment="single">KVPLLHALRLFTSVLLIVTDDNKKISVERTREKKGRIGNAGADGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7S8</accession>
    <name>A0A392P7S8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0028539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065532">
        <property type="protein sequence ID" value="MCI07470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240:SF15">
        <property type="entry name" value="GAG-PRO-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33240">
        <property type="entry name" value="OS08G0508500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="258" mass="29113" checksum="504C93D81C491826" modified="2018-12-05" version="1" fragment="single">ILAEVSSADFKKAVIRFPKQLPVKANMHRTKYCRYHRSYGHVTEDCVHIKDAIEILIQKGYARKYVKDGEREIHEAQMAIEAPTTEKEDNRALVPTTFAISRLEDFLPPPDADEEGLMKHLTAHMDGSWENFPKALVISRVTVSSVKKGFVPLAFYMEEVPGGSPNYQIPLLVRARMANFDVHRILVDQGSSCDVMYSGLFKTLQLTDKNLVPYVGADLQGFNGSTTKPWGYVDLIVTFDEEKAMKSVKVQFLVVDCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAG3</accession>
    <name>A0A392PAG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0030151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071272">
        <property type="protein sequence ID" value="MCI09068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12980" checksum="DA3D9BBCA858A204" modified="2018-12-05" version="1">MKRLSIPITKIPGRMEIETSSSGSVTTQLTVVFPEPEEDLQLMSSKEVRESLKEHAEVFAMFASLKLEGGVKMEELSVVCEFPDVFPEDVSDVPPEREVEFTIDLIPGTSSISMAPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF46</accession>
    <name>A0A392PF46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Homoserine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0031465</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075978">
        <property type="protein sequence ID" value="MCI10372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861:SF1">
        <property type="entry name" value="HOMOSERINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861">
        <property type="entry name" value="HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00958">
        <property type="entry name" value="HOMSERKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP kinase N-terminal" evidence="6">
        <location>
            <begin position="130"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI10372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="26103" checksum="4968C9456821254E" modified="2018-12-05" version="1" fragment="single">MAAAAKAWFPASPASLNSKGPACPTQNRAATFTIRCNAQKPVTLTFTKTEHEPQAIYSSVKTFAPATVANLGPGFDFLGCAVDGIGDTVSLKVDPDVHPGQICISDISGQSPNIHKLSKNPLWNCAGIAAIEAMKMLGIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEIFGKRLGYDELVHACLKSEEKVSGYHADNVAPSIMGGFVLIRNYEPLELVRLNFPSEKELYFVLVTPEFEAPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG29</accession>
    <name>A0A392PG29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transforming growth factor-beta receptor-associated protein 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075578">
        <property type="protein sequence ID" value="MCI10276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034058">
        <property type="term" value="P:endosomal vesicle fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032914">
        <property type="entry name" value="Vam6/VPS39/TRAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12894">
        <property type="entry name" value="CNH DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12894:SF43">
        <property type="entry name" value="VACUOLAR SORTING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9231" checksum="E25844FC0C6F08EF" modified="2018-12-05" version="1" fragment="single">KLEDSEAAEQYCAEIGRADAYMQLLDMYLDPQDGKDPMFTAAVRLLHNHGESLDPLQVLEVTNPWFGPALGPLNLLIASNSVSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392US45</accession>
    <name>A0A392US45_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Chlorophyll a-b binding protein, chloroplastic</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0100125</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Plastid</location>
            <location evidence="2">Chloroplast thylakoid membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960443">
        <property type="protein sequence ID" value="MCI78854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392US45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009522">
        <property type="term" value="C:photosystem I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009523">
        <property type="term" value="C:photosystem II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016168">
        <property type="term" value="F:chlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009765">
        <property type="term" value="P:photosynthesis, light harvesting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3460.10">
        <property type="entry name" value="Chlorophyll a/b binding protein domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001344">
        <property type="entry name" value="Chloro_AB-bd_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21649">
        <property type="entry name" value="CHLOROPHYLL A/B BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103511">
        <property type="entry name" value="Chlorophyll a-b binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="2" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="2" id="KW-0157">Chromophore</keyword>
    <keyword evidence="2" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="2" id="KW-0603">Photosystem I</keyword>
    <keyword evidence="2" id="KW-0604">Photosystem II</keyword>
    <keyword evidence="2" id="KW-0934">Plastid</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0793">Thylakoid</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="2"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>chlorophyll b</name>
            <dbReference type="ChEBI" id="CHEBI:61721"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Mg</name>
            <dbReference type="ChEBI" id="CHEBI:25107"/>
        </ligandPart>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR601344-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI78854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3920" checksum="7C9088ABAD138D68" modified="2018-12-05" version="1" fragment="single">VQAIVTGKGPVENLVDHLADPVNNNAWAYATNFVPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USY6</accession>
    <name>A0A392USY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100208</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010962228">
        <property type="protein sequence ID" value="MCI78937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8379" checksum="FE9284878F084C87" modified="2018-12-05" version="1" fragment="single">VLQRQNQQSAGTRHEALVSDHRGISASGTHNLGYEGHENLVADACRLSHEDHHGEMHYGHPTDVWTKIWREQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUP8</accession>
    <name>A0A392UUP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010951446">
        <property type="protein sequence ID" value="MCI78465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3498" checksum="2FC98943AB2B6307" modified="2018-12-05" version="1" fragment="single">MGRILSGTCASRSLVWRGAPVKQVVEGNLLEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVM8</accession>
    <name>A0A392UVM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010959026">
        <property type="protein sequence ID" value="MCI78785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3593" checksum="E3A5445995A5D678" modified="2018-12-05" version="1" fragment="single">DRKLFHTATAAICVAATAMAVTATPAMATASATATAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXD7</accession>
    <name>A0A392LXD7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ORF">A2U01_0000384</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">cv. 10/8</strain>
            <tissue evidence="21">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010000241">
        <property type="protein sequence ID" value="MCH79631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXD7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000309">
        <property type="entry name" value="Leucine-rich repeat receptor protein kinase MSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000445">
        <property type="entry name" value="MDIS1-interacting receptor like kinase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051420">
        <property type="entry name" value="Ser_Thr_Kinases_DiverseReg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48005">
        <property type="entry name" value="LEUCINE RICH REPEAT KINASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48005:SF70">
        <property type="entry name" value="MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="12 19" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="16" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11 21" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 19" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15 21" id="KW-0675">Receptor</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="20">
        <location>
            <begin position="13"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="MCH79631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="287" mass="32502" checksum="F08B4D6413F98E1D" modified="2018-12-05" version="1">MVYEKIVEATEEFDDKYLIGVGGHGSVYKAKLHTGQVVAVKKLHNHSVANEENLINLKKSFTNEIQALTAIQHRNIVKLYGFCSHSRLSFLVYEFIEKGSLEKILKDDEEAIEFDWNKRVNVIKDVANALCYMHHDCSPPIVHRDISSKNILLDFECVAHVSDFGTSKLLNFNSPNSTSFAYTFGYAAPELAYTTKVTEKYDVYSFGILALEILFGRHSGDVISFVSSSTLDDNTMPLIYKLDQRLPRPLHPMDKKLVSIARTAFACLIENPQSRPTMEQVSKDMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY45</accession>
    <name>A0A392LY45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000641</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000459">
        <property type="protein sequence ID" value="MCH79880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025476">
        <property type="entry name" value="Helitron_helicase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786:SF74">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45786">
        <property type="entry name" value="DNA BINDING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14214">
        <property type="entry name" value="Helitron_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helitron helicase-like" evidence="2">
        <location>
            <begin position="489"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="791" mass="90256" checksum="22A35037ED5EE506" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYF4</accession>
    <name>A0A392LYF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0000738</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000551">
        <property type="protein sequence ID" value="MCH79976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="7">
        <location>
            <begin position="217"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="8">
        <location>
            <begin position="423"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="173"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="599"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="173"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="194"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="599"/>
            <end position="616"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH79976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="813" mass="93098" checksum="914B0F278572996D" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYG4</accession>
    <name>A0A392LYG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Verticillium wilt resistance-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0000707</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000520">
        <property type="protein sequence ID" value="MCH79945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27004:SF428">
        <property type="entry name" value="OS01G0160600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27004">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN 12 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="279"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH79945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="362" mass="41325" checksum="CD2A9A8AC5F35FAA" modified="2018-12-05" version="1">MVLRSNKLHGSIGCPNSTGDWKMLHIADLASNNFNGTLSATLLSGWKAMMRDEAVYGPEFGHLFSEVVENYHPMSLMDALPSFSKYIVMKVLKLVANMSRSFLDQAYVDGNSISVEHGRYQDSVMVVNKGQNMKLVKIQKAFTYVDMSNNYLEGPIPDELMQFKALNALNLSHNAFLGHIPSSVGNLKNLESMDLSNNSLNGHIPQELSSLYFLEYMNLSFNHLVGKIPLGTQIQSFDADSFIGNEGLCGPPLTNICGPAPPAYETPHVHNESLMECSFLSIELGFIFGFGVFVLPIICWKKLRLWYSKHDDEMLYNFXCWKKLRLCYSKYVDEMLYKFIPQLDFVYEQHEGKRYRTLRWRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZS9</accession>
    <name>A0A392LZS9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001113">
        <property type="protein sequence ID" value="MCH80489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZS9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006566">
        <property type="entry name" value="FBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050232">
        <property type="entry name" value="FBL13/AtMIF1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900:SF34">
        <property type="entry name" value="EMB|CAB62440.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31900">
        <property type="entry name" value="F-BOX/RNI SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08387">
        <property type="entry name" value="FBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="5"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="361" mass="42083" checksum="554D353E8A35FEE5" modified="2018-12-05" version="1">MAEEEDIISTLPDAILCHILSFLQTKQSVATSILSKRWKHLFLSVPVLYFKTTVTDQNEYIRFNDFVYSVLLSRDPALPIKTFFLEFTFNDYQILSPHCPMDTITKWVKFVAQRGVQYIDLYVGTVAFPEMPISILTCSTLVVLNLQCFSVEETFSPVLLPSLKTLHLENIWFNKLRDLMLFLNGCPILEDLFTFNVLFDSEESLTCDEWKTFCLSNLTRADIDCFSSHFPLKAVHNVSSLRLQIDRVNCRNDFISTFHNLTHLELIYLNYSWHFLLQVLKLSPKLQELKIDQAGLNKDYWTRKDDKENWVDPDFVPQCLSLHLRTCNLVNFLGLQGELQLARAMWERVVVISNVQLCKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZV3</accession>
    <name>A0A392LZV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001347</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001212">
        <property type="protein sequence ID" value="MCH80577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF105">
        <property type="entry name" value="AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="4">
        <location>
            <begin position="39"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="401" mass="46077" checksum="9A4CFDBA45129DE0" modified="2018-12-05" version="1">MVKELIKTIEKSKQFDEVAMAVVSQDINYEKIQIQIAEDDVWDILDFECIGLPYLEHEKSCKILFTSRDEKVCQNMGCKVNFQVSVLLKDESWYLFREMAGEIVDRPDISPIARDVANECGGLPLAIVTIGRALSNVGKYAWEDALTQLRNFQSSSHLDVEKFVYSSIELSLKFLGNTEHKPFLMLCGLFPEDFDIPIESLLHHAMGLGLFKDISVSWKSRNRVLSMVDDLKRKYLLLDSNVLGCVKVHDIVRTVVLSLAFKNEKEKYMVQYNIKSLKEDKLNDINAMSLIFDDTNELENGLECPTLKLLQYLIDGTVYCIGFPQIHSLALRNLLNLKEIYYRPNHHEVKGMMIDFSYLVKLELVSLPRFIGFNSTMDLNERNQELSVAIDSANRVNVPWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M056</accession>
    <name>A0A392M056_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NYNRIN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001345">
        <property type="protein sequence ID" value="MCH80682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M056"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="7"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="320" mass="37028" checksum="367C82519BBEB583" modified="2018-12-05" version="1">MPQQVMVEVEPFDVWGIDFMGPFPSSHSNLHILVCVDYVTKWVEATACQANDAATVVRFLKKNVFTRFGVPRVLISDGGKHFINNHLANLLKKYNVKHKVATPYHPQTSGQVEVSNRQLKQILEKTVSSSRKDWSLKLDDALWTYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAVKHLNLDATLAGRARLLKLNELEEWRERAYENVVLFKARTKRYHDAKLVPKFFHKGQKVLLFNSRFKLFHGKLKSKWSGPFIDKEVFPHGAVEIYKPGEEDSSFKVNGQRLKVYREGENIRHKVALFFRNPPQVGTSFHNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0K0</accession>
    <name>A0A392M0K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001490">
        <property type="protein sequence ID" value="MCH80786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4625" checksum="98B14ACC20945048" modified="2018-12-05" version="1" fragment="single">STGMCEMRKVVKKRVVRKGVNIEEAIDAAILCLFVGSGEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M115</accession>
    <name>A0A392M115_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001749</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001708">
        <property type="protein sequence ID" value="MCH80971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9065" checksum="7263E3198BC16E0A" modified="2018-12-05" version="1">MKVFHPLSTAAVITCLFFVHIHTFLDFLPSVSSNGVQEEEEDIEEQGLLRKWVLEVEDGNEEEDGVKCANPICXSKAILCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1E0</accession>
    <name>A0A392M1E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001838</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001827">
        <property type="protein sequence ID" value="MCH81059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="245"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="328" mass="37359" checksum="2176C62801487F4D" modified="2018-12-05" version="1">MVSDPLSQSRVYQMCIWKAIRLLGLKVLALSEPYHYPIMLIREPGPRIQRGQNKFKFENAWLVDPDFHDFVCAKWQSYGDKDISAKLDMCAMDLSVWNRNNFQHLRQDIADCRRKLDRVRCQVHAGNINYFNALKKRMSHLLVKEDALWKQRAKTHWLQQGDLNTKFFHAAATSRRKNSTLPPVLDAISPSISADDNTSLTAPLTLEEFREALFSMKADTCPGPDGFNPGTFPSTLNLTNIALISKRDEQISMKDWRPTALCNVIYKLVAKVLANRLKNILDKCISANQSAFVPSRSILDNAMASIEIVHFMKSKTRGRSGEVXXXXS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="33" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1H5</accession>
    <name>A0A392M1H5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0001884</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010001889">
        <property type="protein sequence ID" value="MCH81105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048544">
        <property type="term" value="P:recognition of pollen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00028">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00054">
        <property type="entry name" value="EGF_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01098">
        <property type="entry name" value="PAN_AP_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000195">
        <property type="entry name" value="G-type lectin S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.90.10.10">
        <property type="entry name" value="Bulb-type lectin domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001480">
        <property type="entry name" value="Bulb-type_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000742">
        <property type="entry name" value="EGF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003609">
        <property type="entry name" value="Pan_app"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000858">
        <property type="entry name" value="S_locus_glycoprot_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444">
        <property type="entry name" value="BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32444:SF234">
        <property type="entry name" value="RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01453">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08276">
        <property type="entry name" value="PAN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00954">
        <property type="entry name" value="S_locus_glycop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00108">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00473">
        <property type="entry name" value="PAN_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50927">
        <property type="entry name" value="BULB_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50026">
        <property type="entry name" value="EGF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50948">
        <property type="entry name" value="PAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="12" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="9" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="19" id="KW-0430">Lectin</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="392"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="Bulb-type lectin" evidence="17">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="EGF-like" evidence="16">
        <location>
            <begin position="241"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="domain" description="Apple" evidence="18">
        <location>
            <begin position="267"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="457"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="485"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH81105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="545" mass="61796" checksum="C313FEDA04B9FDA3" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2G5</accession>
    <name>A0A392M2G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002318">
        <property type="protein sequence ID" value="MCH81456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="168"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="202"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="23980" checksum="D7CC2C9D821557B0" modified="2018-12-05" version="1">MGGSAGESFSDGDSTEVPLNNETCVNDKLGSPELQAEKDIQQATMDEIASNMLCICTNFRNLVELVQKQGEMMEEHASNVKRISSVLGRTIDKIGDNESRTNEMVGMCSEILRKVNNIENMFTKSPPSNTNKSRTXXTPVHYNDDAYASKDDISNIVLFISSDEDEDQNIPKRTRTRVETVDPYKTSGSSVKKSIAKTCSGGKKETKSTERAGTESKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2K5</accession>
    <name>A0A392M2K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GPI ethanolamine phosphate transferase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002037</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002066">
        <property type="protein sequence ID" value="MCH81253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2K5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051377">
        <property type="term" value="F:mannose-ethanolamine phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039524">
        <property type="entry name" value="PIGO/GPI13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23071:SF1">
        <property type="entry name" value="GPI ETHANOLAMINE PHOSPHATE TRANSFERASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23071">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL GLYCAN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16167" checksum="CA6A40209EF18907" modified="2018-12-05" version="1">MGDHGQTLNGDHGGGSAEEVETAIFAMSFKEPLSSVPPEFDSYSCQIDLDGNNVCISSMQQLDFAATMSALLGIPFPYGSIGRINPELYALGAGSWKSGASQKQPESDIWMKSYANALCINAWQCTWPYNISSGEGSKVLDSVSIIVSEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3H0</accession>
    <name>A0A392M3H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Extra-large guanine nucleotide-binding protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0002363</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the G-alpha family. XLG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002468">
        <property type="protein sequence ID" value="MCH81573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005834">
        <property type="term" value="C:heterotrimeric G-protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001664">
        <property type="term" value="F:G protein-coupled receptor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031683">
        <property type="term" value="F:G-protein beta/gamma-subunit complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007188">
        <property type="term" value="P:adenylate cyclase-modulating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.400.10:FF:000005">
        <property type="entry name" value="Extra-large guanine nucleotide-binding protein 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.400.10">
        <property type="entry name" value="GI Alpha 1, domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001019">
        <property type="entry name" value="Gprotein_alpha_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011025">
        <property type="entry name" value="GproteinA_insert"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10218:SF334">
        <property type="entry name" value="EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10218">
        <property type="entry name" value="GTP-BINDING PROTEIN ALPHA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00503">
        <property type="entry name" value="G-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47895">
        <property type="entry name" value="Transducin (alpha subunit), insertion domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51882">
        <property type="entry name" value="G_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="7 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0539">Nucleus</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0807">Transducer</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="172"/>
            <end position="178"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00060880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR601019-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR601019-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH81573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="24067" checksum="03A356FB5D01FE2B" modified="2018-12-05" version="1" fragment="single">MTFHCGDLVTAEQAKFLYGNKFTAQELEDVKLMIQSNMYKYLSILLDGRERFEEEAVSRMNGQSSPAQITEAGSNGEASNTSECVYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMEFSLEDRSPKFEAYTDNLDAQLPPQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3J6</accession>
    <name>A0A392M3J6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase-like plant mobile domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002644</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002865">
        <property type="protein sequence ID" value="MCH81851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3J6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010073">
        <property type="term" value="P:meristem maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044824">
        <property type="entry name" value="MAIN-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033:SF65">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46033">
        <property type="entry name" value="PROTEIN MAIN-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="1">
        <location>
            <begin position="133"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="384" mass="44208" checksum="8EBEF944EB3DB88F" modified="2018-12-05" version="1">MASGSNQQEELPLAGKWTDENLKGYAPNQVPEPVTRLKSLWETQVIFPYSLNGTTHAFGGPKPDDNNRNKKTMSFFPLYQSSSPRAFLKEPYNFTYIKPTNKVFRSAPSHKDKYIAWLDRVQHDFEGIWQTAGIFDLIQLSRTGLKYDQEMIIVALHFFETSTNTFHFECGMMTPTLFDVAAITGLSPLGDTYDPYKSTRNIEVVMRDKTYTKYIAEQHKDTEEVSDEEHVAFLALWLSQYVFCTRSLQVAKMFVPMATQLHECHQFGFGRLLLGCLYEAMRIVCGNIKKAGDGSTFLGDGSTFLGSGPFWLLQLWLNATFSKELEIFLREQYYPESAERQIEGIRLARMIPRPRGKLVQHGLFIHFLHYQNMKKNKMPFGQHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M420</accession>
    <name>A0A392M420_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003110">
        <property type="protein sequence ID" value="MCH82029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M420"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6686" checksum="6D0103315A76D2D5" modified="2018-12-05" version="1" fragment="single">VNIAPDVQKESSNANSTIELIAYCAFSSSSVTGRPSEDVDSRPISVHSQVLVLHVLLLCHLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4N7</accession>
    <name>A0A392M4N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">UDP-galactose transporter 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0003083</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003448">
        <property type="protein sequence ID" value="MCH82281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004853">
        <property type="entry name" value="Sugar_P_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050186">
        <property type="entry name" value="TPT_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11132">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03151">
        <property type="entry name" value="TPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="182"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Sugar phosphate transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="236"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="243"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH82281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="29799" checksum="9479D0263729FDD0" modified="2018-12-05" version="1">MNVSLMWNSVGFYQIAKLSMIPVSCFLEIVLDNVKYSRDTKLSISLVLLGVAVCTVTDVSVNAKGFIAAAVAVWSTALQQYIKVGVGNGKCVLSRCMTLVVMYHYVHFLQKKYSLGSFNLLGHTAPIQATSLLLVGPFLDYWLTNKRVDAYNYGLTSILFIVLSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLTLGFILFGKEGLNLQVIVGMIIAIMGMIWYGNASSKPGGKESRSSSSIPIPTTKTQEYNLLPVASAETGHSDEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M565</accession>
    <name>A0A392M565_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003345</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003819">
        <property type="protein sequence ID" value="MCH82537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M565"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="42"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="123"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="678"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="678"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="693"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="757"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="757" mass="84080" checksum="04F0C5131CECD55E" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5V4</accession>
    <name>A0A392M5V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003609</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004203">
        <property type="protein sequence ID" value="MCH82797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003871">
        <property type="entry name" value="RFA1B/D_OB_1st"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02721">
        <property type="entry name" value="DUF223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Replication protein A 70 kDa DNA-binding subunit B/D first OB fold" evidence="1">
        <location>
            <begin position="5"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5972" checksum="9951B5E45AF3A9AC" modified="2018-12-05" version="1" fragment="single">MDPTFDMLCDVLPGRETWRVKVRVIRVWKVPNFLNHDQTNSVEMVLIDEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M611</accession>
    <name>A0A392M611_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CW-type zinc-finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0002967</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003300">
        <property type="protein sequence ID" value="MCH82168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M611"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055300">
        <property type="entry name" value="CWZF3/5/7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056406">
        <property type="entry name" value="THD_CWZF3/5/7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46524:SF12">
        <property type="entry name" value="CW-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46524">
        <property type="entry name" value="CW-TYPE ZINC FINGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24756">
        <property type="entry name" value="THD_CWZF3-5-7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CWZF3/5/7 THD" evidence="2">
        <location>
            <begin position="277"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="447" mass="49270" checksum="562688B47B24D625" modified="2018-12-05" version="1" fragment="single">MGRGNNQVKEAKDKVRVQVKTSSENKSNRLLGIPVEEHGSCANGMHHEEKVNKYNQDELSGKKPDKVTSLHSMEKNRRSGSQVGTDKMKVLASENCYSKIGGKHDPELDPSHHVFGTETRNDAKYRSPMSKCEIDNINQKNASRHGSIETGKQTEPKQNDFEKSFMKMDTQHSTGTRKTISQPNATQDVQEENKANHACTESSNRKSKVLTSADGETKRETLTVPRYQKGDMSNEHPPVLAGNSGLTKSVKNSADSSGNVLVNCSSGSVAPGQQLTVSSPVRTNANQTAVDTLEEATKLKDKADHYKNSGFDFESNETYFEAGLKFLHGASLLESCHNEIRKHVEMSQMQIYATAAKLFKSCAHEYESRQEMAAAALAYKCMEVAYMRVVYCKHSSTNRDRNELQSTLQMVSQGESPSSSASDVDNLNNQVAMDKATLPKGTNAHVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6R0</accession>
    <name>A0A392M6R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribokinase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003615</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004209">
        <property type="protein sequence ID" value="MCH82803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6R0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052562">
        <property type="entry name" value="Ketohexokinase-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42774:SF3">
        <property type="entry name" value="KETOHEXOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42774">
        <property type="entry name" value="PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8861" checksum="9C1A32DD914F6AA7" modified="2018-12-05" version="1" fragment="single">MIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKVSAIMLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6T1</accession>
    <name>A0A392M6T1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box only protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004198">
        <property type="protein sequence ID" value="MCH82795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22157">
        <property type="entry name" value="F-box_AtFBW1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011043">
        <property type="entry name" value="Gal_Oxase/kelch_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF7">
        <property type="entry name" value="F-BOX DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50965">
        <property type="entry name" value="Galactose oxidase, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="20"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="406" mass="45361" checksum="3BC4F0AB1B0BFEFD" modified="2018-12-05" version="1">MEHSLKRKAPENGDNLLLDSFSLDDLNEDLFERVLSWLPTSSFFRLTSVCKRWKSAAASVSFKLACSHIPSRDPWFFMVAPSLNQSVIFDSAENGWKRLNHPNLLLEDSNQSCIPVAASGGLVCYRTSSGNFIVSNPVTGSCCKLPPLNFTSEYQSLNAIVMSTAFNDPISYKIVLVFGELPNLSFKVYNSSSACWEDEHALGRKVDDSSMDCDSTDDNVVYFLSKAGNVVASSMQRSPTKQYSSVITNKDGQEIVYFLSSSGTVVACNLTCKCFFEYPRLLPVFCEYSIDIVECNGEMLVVLLSEFLESTSLRVWKFDEANRCWQQIAAMPVAMSHEWYGKKPDINCVGAGSRIFICLNSPELCTYVLCDLVTNKWVELPKCCVNGEVIDFMSAFSFEPRIEXSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7D8</accession>
    <name>A0A392M7D8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposon Ty3-G gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005087">
        <property type="protein sequence ID" value="MCH83380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7D8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="88"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="220"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="436" mass="48718" checksum="1E9BA0A293AE0118" modified="2018-12-05" version="1" fragment="single">MEELVQQLAQFQAVFQSTMADVSTRVASLERRSPDPIPASPSPSVNSMTPRLKLDVPRFDGTNPHGWIFKISQFFEYHRTPEEDRITVASFYLDGAALAWYQWMYRNGQIVSWNQFLLALELRFAPTAYDDPKGKIFKLTQSSSVAAYLSEFESLANHIVGLSQMDLLSCFVSGLKPEVRREVLAQQPTSLNQATGLARLNEEKINDLLRIGRARSNPPWYSSKTPSVTQKLSSESSNAPSNPPLLPTPPSKPRFRQLSSAEMEECREKGLCFNCDERFSRGHRCKARFLLLIADDDEGTDSGQREEFEDVDSILAALGPTEIDSAQLSFHALSGIQTAQTIRVLGQIESNPVQVLVDGEHSSIFVEPSSLPPVRFTDHAIPLLPSSSPVNVRPYRYPHAQKQEIEAQVTKLLTNGWITPSNSPFSSPVLLLKKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M810</accession>
    <name>A0A392M810_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005500">
        <property type="protein sequence ID" value="MCH83627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M810"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="284" mass="31214" checksum="4CB7D9A6416ED8B4" modified="2018-12-05" version="1" fragment="single">NHPKHQHNIEAKLVALQVSSASNGGSNSSTQSSTNQPFQLLTRAIDKLQEDIDVAESTNDAFPTSKATLMSIELSDVQSAEESVGLRTSMVEAVTPVVCMPLLNEITYASPQSILIKSSSSNFDPPPLPPLKPPDQSFSKIIVELHVICNLMMPPPPPKPLYAIHGDVNITVLLSCLEIVCANRMVIKTELSTDSDHCILREDLVDGNRYDISILELAFVPFNALILYVKCSKSFAHKVVIYIFQVWNAHHVFDVMPKMIVFCSNSLNVGFITAGVLDEKIVIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8E1</accession>
    <name>A0A392M8E1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin carboxyl-terminal hydrolase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004377</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005380">
        <property type="protein sequence ID" value="MCH83551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8E1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050164">
        <property type="entry name" value="Peptidase_C19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24006:SF786">
        <property type="entry name" value="UBIQUITINYL HYDROLASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00973">
        <property type="entry name" value="USP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="USP" evidence="2">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12163" checksum="21D2DD40A5AB1D48" modified="2018-12-05" version="1">MEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEAVDESSVQTFFGSTQDFNNNTDHGYILFYESINRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9L6</accession>
    <name>A0A392M9L6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005028</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006426">
        <property type="protein sequence ID" value="MCH84197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF176">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="72"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="357"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="431"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="431"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="487"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="506" mass="56728" checksum="B0DEE4A9DD8D5718" modified="2018-12-05" version="1" fragment="single">SSSSPSTISKKSFADAINNVCDIPASQLPLPVVKGDRIAISMPDEEYQVGLADCKHNLHGRIIWPKGSTPLKVADVKNKLSPLWKSLGKWGITSLGKGFYEFSFSSLEDVQSVRSIGSWNLNPGFLKLFXWTKDFNPNIQQNTTAQVWLRIYGLAQEYWRPNILFAIASSVGTPICTDQLTSRPRFDREFGHFARVLVDMDLRKKPIYRVLVERTGFAFFVDFDFENRPSFCHFCNTIGHEQDNCKRVINDKNKFEKEHIAKSQVQPPKKVFVAKNIRKETHSEPVVETHSEPIVVADTEPAVEAHLEPVVEVVNLEGATVTEIPQPDPLLECILMSKVDSRTLQRAIIPVVEVINSPEENQQRPDQLEDESSSAASEFVDATQMVHEDFHGIVSSKSPSKDQLAHTSEFPERVVKDMQFLHNSWANLAELDDQENLEEPPDPGVFTRGKNSNVAAATPVDNQLELLDKEESFQDVVSKKKSKKTTASGRKSYSTRAKVGSSNLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAY8</accession>
    <name>A0A392MAY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Serpin-ZX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005428</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007073">
        <property type="protein sequence ID" value="MCH84596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAY8"/>
    <dbReference type="SMR" id="A0A392MAY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.10.310.10:FF:000001">
        <property type="entry name" value="Serpin family A member 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.39.10">
        <property type="entry name" value="Alpha-1-antitrypsin, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.310.10">
        <property type="entry name" value="Serpins superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023795">
        <property type="entry name" value="Serpin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042185">
        <property type="entry name" value="Serpin_sf_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF211">
        <property type="entry name" value="GH10112P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="SERINE PROTEASE INHIBITOR, SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00093">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00284">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serpin" evidence="3">
        <location>
            <begin position="6"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="186" mass="21120" checksum="6CA91FE839C818DB" modified="2018-12-05" version="1">MNDQFISVFDGFKVLGLPYKKGKDKRQFSMYFFLPDTKDGLSSLIEKVTSKSEFLKIKLPNKKLEVNDFRIPRFNISFELETSNVLKELGVDLPFYPGGLTKMVDSPMDKDLYVSKIFHKSFIEVKEEGTEAAAATVGEMMVGCSMGDFTTPEIDFVADHPFLFMIREDISETILFMGQVLNPLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB88</accession>
    <name>A0A392MB88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myosin-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005613</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007360">
        <property type="protein sequence ID" value="MCH84777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000146">
        <property type="term" value="F:microfilament motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007015">
        <property type="term" value="P:actin filament organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140:SF706">
        <property type="entry name" value="DILUTE CLASS UNCONVENTIONAL MYOSIN, ISOFORM C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13140">
        <property type="entry name" value="MYOSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00015">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="96"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="28991" checksum="1933EACDBCC05155" modified="2018-12-05" version="1" fragment="single">MVGALEDKRKLVLQGILGVQKCVRGHQARSHFNKLKNGVTILQSFVRGEIARRKYGVMVKSSITISSENIEEIQAIITLQSVIRGWLVRKHNSSLNKLKKHPENGKSRRRSRLKMSFDKQKEEENAELREQLKQFEKRWIEYEKKMKTMEEMWQRQMASLQMSLAAAKTSLASENANGQPSRHDVSLPSNFCYDSEEAISMGSRTPRTPGCSTPLKYSSSLSEVRAARDGNGAINNLMKEFEQRRQTFDEDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBB6</accession>
    <name>A0A392MBB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">5'-3' exoribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0005227</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006749">
        <property type="protein sequence ID" value="MCH84395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004534">
        <property type="term" value="F:5'-3' RNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000956">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.1050:FF:000002">
        <property type="entry name" value="5'-3' exoribonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.1050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027073">
        <property type="entry name" value="5_3_exoribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041412">
        <property type="entry name" value="Xrn1_helical"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12341:SF41">
        <property type="entry name" value="5'-3' EXORIBONUCLEASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12341">
        <property type="entry name" value="5'-&gt;3' EXORIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17846">
        <property type="entry name" value="XRN_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Xrn1 helical" evidence="6">
        <location>
            <begin position="4"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH84395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="26152" checksum="107A7CE891CBD489" modified="2018-12-05" version="1" fragment="single">MAMFYPYHYAPFASDLKGLGELNINFELXTPFKPFDQLIGVFXAASSHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEKLLTPEEKRRNAIMFDMLFVNSCHPLSVCISTLDNKCRNMSNCKRADVKERINPIERSPVAGMEDIIDNHVICAIYRLPDAHGHITRPPHGVGFPKKTVAIEDLKPEPVLWHEDSGRRYGESQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBR1</accession>
    <name>A0A392MBR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Inactive TPR repeat-containing thioredoxin TTL3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006914">
        <property type="protein sequence ID" value="MCH84499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044534">
        <property type="entry name" value="TTL1-4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46050">
        <property type="entry name" value="TPR REPEAT-CONTAINING THIOREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46050:SF29">
        <property type="entry name" value="TPR REPEAT-CONTAINING THIOREDOXIN TTL4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13432">
        <property type="entry name" value="TPR_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="318" mass="35807" checksum="0B1F6467EA5DAEBD" modified="2018-12-05" version="1" fragment="single">FGQVENSRRHLGLAGLRDDQSEEKKLLLLEKHLNQCADERKKGEWERLIREVDAAVALVACKAEAYLKLHRLDDAESCLSNIPKLEGCPQACSQAKFFDMVGETFVHFVSAQVDMALGRFENAVAAAEKASFLDRSNDEVATILNVVKMVAMARSSGNALFCSGKFKEARRAYREGLKYDNSNSVLYCNRAICWFKLERWEKSVKECNKALSIRPNYTKALLRRAESNEKLERWAEVVKDYQALKQILPNDNEVAXXXXXXXXXXXXXXXXVNGTKFGVEVEEITALDKFKAAIAYAGGCRGVSSDSESRKHKKRSNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC18</accession>
    <name>A0A392MC18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc CCHC-type-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005170</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006665">
        <property type="protein sequence ID" value="MCH84338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF178">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="276"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="59"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="415"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="72"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="415"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="445" mass="50813" checksum="68AF00B24D77A6D6" modified="2018-12-05" version="1">MVYSSVVLSDWLFSPPGTCKRHSGLYKQPRPSWAMWIYLSPPSTPNQFLTINTQPLNATSHHPQYHQHTDIPESSNTRNAPSSKPNIPRSFLYSDTIINEGINACKRSIIGKIITDKPIHVSSIQNGLENIWGAPPGLKIQVLEGKLLQFFMNDIADQHRILQGNPWIFRNSWLVVKPWDREIDYHTMDFDHVPIWIQLWGLPPHCKTKQMGESISTLLGNVEAAKFYEYPKKEVIIKVKVGINIKNPILSGIHVGNPTDGTSLVDYRYEKLPQVCFKCGMIGHADKLCRNQALYLETLAPLGPWIRSTKYGKRKMEEKDRKFYSNPSHGKNFGHYSPPVPADLLEKLAAMKVKPTPTTHSPQNPPQYTQNHNNLIYTESPTMECIQTQQDERIKKAHRINFHNEPQTLTTITEAPTQEQQMQVKRQKMEDNLRVGTAKQASPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC24</accession>
    <name>A0A392MC24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007822">
        <property type="protein sequence ID" value="MCH85052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7325" checksum="A113D7A37EBD0AA3" modified="2018-12-05" version="1" fragment="single">MYFLRIPLNSSESHEFVVTGYLSEEKLGKALEGADVVKILSGVKSLATAIGLRWKTKKIDTPRCNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCH2</accession>
    <name>A0A392MCH2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005642</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007404">
        <property type="protein sequence ID" value="MCH84805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="97" mass="10237" checksum="AB3ABA3CA0302515" modified="2018-12-05" version="1">MVHGSILMKGKNSAKYVEKVPGCYRVSIPLPKLFVAATLALYVAFVMLVLVLIVPEVVGFLCILLKLGPFRLCGCYCALDSGSVSCSVVGASGADVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD16</accession>
    <name>A0A392MD16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AP-2 complex subunit alpha-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007660">
        <property type="protein sequence ID" value="MCH84949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="132"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="133"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="17803" checksum="CCF33EF3D77A913C" modified="2018-12-05" version="1" fragment="single">MKTYRACYIFDQPYAAAKAREYLDKPAIHETMVKAEDTEVDTAEQSAIKLRAQQQSQASNALVVTDQSYANGAPAPVGQLSLVKMPSTSSNVGDISADQRLSQENGTXXXXXXXXXXXXLLVDLLGPLAIEGPPSSSVHPQPSSNPGIEGTVVDATAIVPAGQEASSVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDB0</accession>
    <name>A0A392MDB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008212">
        <property type="protein sequence ID" value="MCH85281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH85281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7777" checksum="AF33DFE4B960199B" modified="2018-12-05" version="1" fragment="single">MFQGDDMMMTTPGNCMFQGDALVLTTFRGQTRPCPCFAERSAKSCLYLCKYNKQKEVSLPFEDLDPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDY7</accession>
    <name>A0A392MDY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006327</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008594">
        <property type="protein sequence ID" value="MCH85481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017304371" evidence="1">
        <location>
            <begin position="23"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6556" checksum="4F0ED0E16B5AE775" modified="2018-12-05" version="1" fragment="single">MWLVGDSWINQMVGILMTAVTAALPAVSDSRKKECKKGFSKRNAKRLGNSVQMVLFDVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME10</accession>
    <name>A0A392ME10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0006357</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008642">
        <property type="protein sequence ID" value="MCH85511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="11">
        <location>
            <begin position="89"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH85511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="35599" checksum="39E011CAE9A0F672" modified="2018-12-05" version="1" fragment="single">MRQRRWIEFLKDYDFELSYHPGKANVVADALSRKTLHMSAPMARDQPRKGHKTDPELVKYVELINQGREIDFKEGHRSKLSIHPGANKMYQDLKGVFWWPRMKKDTAICTVSRRVSCRIETQDSLRDFGKVCKRLGTKQRLSSAYHPHTNGQTERTIQSLEDLLRACVLEQGGSWDNCLPLVEFTYNNSYHYNIGMTPFEALYERMCMTPLCWHEYSERVVLGPEMIRQTTEKVKMIQEKMKASQDRQKSYNDRKRRAVEFQEGDHVFLRVTSMTGVGRALKSRKLTPRFIVSYQILKRIGDVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME68</accession>
    <name>A0A392ME68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isocitrate lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-threo-isocitrate = glyoxylate + succinate</text>
            <dbReference type="Rhea" id="RHEA:13245"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="EC" id="4.1.3.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009143">
        <property type="protein sequence ID" value="MCH85792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004451">
        <property type="term" value="F:isocitrate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00377">
        <property type="entry name" value="ICL_PEPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="entry name" value="Phosphoenolpyruvate-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039556">
        <property type="entry name" value="ICL/PEPM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42905">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42905:SF2">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13714">
        <property type="entry name" value="PEP_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="10796" checksum="48028C0B93A088D1" modified="2018-12-05" version="1" fragment="single">GDADNGYGNAMNVKRTVKGYIAAGFAGIILEDQVSPKACGHTQGRKVVSREEAVMRIKAAVDVRNESGSDIVIVARTDARQALSLNEALYRSRAFADAGADV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME85</accession>
    <name>A0A392ME85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009181">
        <property type="protein sequence ID" value="MCH85812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ME85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5105" checksum="C73A7294E71DB4D6" modified="2018-12-05" version="1" fragment="single">MDIDELVYYSDYDSLHCINLIKGETPGQSDDGGLNPPSDESSGNNGGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF42</accession>
    <name>A0A392MF42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Puromycin-sensitive aminopeptidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006234</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008418">
        <property type="protein sequence ID" value="MCH85388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042277">
        <property type="term" value="F:peptide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043171">
        <property type="term" value="P:peptide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd09601">
        <property type="entry name" value="M1_APN-Q_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.390.10:FF:000033">
        <property type="entry name" value="Endoplasmic reticulum aminopeptidase 1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="entry name" value="Neutral Protease Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="entry name" value="tricorn interacting facor f3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034016">
        <property type="entry name" value="M1_APN-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050344">
        <property type="entry name" value="Peptidase_M1_aminopeptidases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11533">
        <property type="entry name" value="PROTEASE M1 ZINC METALLOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11533:SF174">
        <property type="entry name" value="PUROMYCIN-SENSITIVE AMINOPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="Leukotriene A4 hydrolase N-terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Aminopeptidase N-like N-terminal" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="Aminopeptidase N-like N-terminal" evidence="4">
        <location>
            <begin position="96"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M1 membrane alanine aminopeptidase" evidence="3">
        <location>
            <begin position="176"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR634016-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR634016-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="262" mass="29399" checksum="DC7A75F95A4CB3D9" modified="2018-12-05" version="1" fragment="single">MAVTQFEPADARRCFPCWDEPACKVYLFPSFTLLLSTHYEARTLLRLAVSRVRHCRCPTPILSVSMSCPVSVSVLHRAHTRVGYKKNSINLWLTLQATFKITLDVPSDLVALSNMPIAEEKIDNNLKTVSYQESPIMSTYLVAVVVGLFDYVEDHTPDGIKVRVYCQVGKANQGKFALDVAVKTLGIYKDYFETPYTLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVAVVVAHELAHQWFGNLVTME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MH21</accession>
    <name>A0A392MH21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006902</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009636">
        <property type="protein sequence ID" value="MCH86048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MH21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="28"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="416" mass="46634" checksum="50423FE32288C6B7" modified="2018-12-05" version="1" fragment="single">MGGVRLTEYDESERRGDGFVRRLNNEATSFFFTNIPEDVLVVDLWKVFAKFGRVGEVYIPNKVDRWGRKFGFVKFLEVKNVEELNVKLGEVWCGTFKLRINLARFGRNINQKARGQPSENKVDGPSFKEVLGGGVVLSDKKLKGKEITETAVLKLPNDALLLSSPLQLEPDMEFIYTLESSVVGRLSKGKNIKQIQFNLCMEGYRNIRVANMGEGLVLVFSESGGDVGLAISKKSWWEGLLEDLRPWSPLMVTTKRDVWVRLYGVPLQLWNEQVFGSILKPRGDIVGLDDDTRGRTRFDVARVKLSSPILGSIDFTQEIVSQGISFVVRVVEERGGPLEFIHVSREEDQLGWSAVVSSCDSGERGDRGPEVAMVVGGDFGDSDSDGSEQCKQRESVVLQVAQRCNEVKRNFEILSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHX9</accession>
    <name>A0A392MHX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Chloride channel protein CLC-c-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0007519</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010711">
        <property type="protein sequence ID" value="MCH86659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034707">
        <property type="term" value="C:chloride channel complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009705">
        <property type="term" value="C:plant-type vacuole membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3080.10">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051280">
        <property type="entry name" value="Cl-channel/antiporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002251">
        <property type="entry name" value="Cl_channel_pln"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="ClC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689:SF144">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11689">
        <property type="entry name" value="CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01120">
        <property type="entry name" value="CLCHANNELPLT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="Clc chloride channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7" id="KW-0868">Chloride</keyword>
    <keyword evidence="7" id="KW-0869">Chloride channel</keyword>
    <keyword evidence="7" id="KW-0407">Ion channel</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="258"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="332"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH86659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="391" mass="42542" checksum="35E3229BC4C7B307" modified="2018-12-05" version="1" fragment="single">MVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWSPSLSLLWRSALLWRTFFTTAVVAVVLRGFMEYCKGEKCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCIPCPSHVGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIP6</accession>
    <name>A0A392MIP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Calcium uptake protein 1 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008225</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012043">
        <property type="protein sequence ID" value="MCH87357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990246">
        <property type="term" value="C:uniplex complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036444">
        <property type="term" value="P:calcium import into the mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051560">
        <property type="term" value="P:mitochondrial calcium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039800">
        <property type="entry name" value="MICU1/2/3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12294:SF23">
        <property type="entry name" value="CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12294">
        <property type="entry name" value="EF HAND DOMAIN FAMILY A1,A2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12719" checksum="3F03EBDCC43E8CD8" modified="2018-12-05" version="1" fragment="single">ILRLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLLERVDELNNDPCFKDVRITFEDFKNFAELRKKLFPLSLALFSFGKVNGLLTRDDFQRAASHVWHLSSFLCLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK33</accession>
    <name>A0A392MK33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SWR1-complex protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008731</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013039">
        <property type="protein sequence ID" value="MCH87850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035267">
        <property type="term" value="C:NuA4 histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000812">
        <property type="term" value="C:Swr1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008468">
        <property type="entry name" value="DMAP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027109">
        <property type="entry name" value="Swc4/Dmap1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12855:SF10">
        <property type="entry name" value="DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12855">
        <property type="entry name" value="DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05499">
        <property type="entry name" value="DMAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA methyltransferase 1-associated 1" evidence="2">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12288" checksum="9CE76D734FDC5735" modified="2018-12-05" version="1" fragment="single">LRVYLRTYALDQMVQASNSSAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGEPPGTPKDRTFIPDFNFGGNIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK41</accession>
    <name>A0A392MK41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0008741</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013059">
        <property type="protein sequence ID" value="MCH87860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="11">
        <location>
            <begin position="172"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH87860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="494" mass="55700" checksum="6BD43B93469B598E" modified="2018-12-05" version="1" fragment="single">VIQTPEQQHYLSKLLGFHYDIQYKPGSSNVVADSLSRVEINSASFGVLSVPQFLFLDELKQELATDPIFQSLLEKYHADSGSLPDYKLVDGLLIHKGRIWISPNSRFKTLLLKEFHDTLVGGHAGVVKTLKRLSANFFWDNMRQEVQNFVRQCTVCQATKYDIRKPNGLLQPLTIPSQVWEDVSMDFVTGLPTSLGFSVLLVVVDRFSKGIHLGALPTGFTTYKVADLFTSMVSKHHGIPRSIVSDRDPIFISRFWSELFKYSGTILRMSSSYHPQTDGQTEVMNGTIEQYFRAFAHAKPSLWARFLPWAEYHYNTSVHSASGLSPYEVIYGKPPPNIPNYISGSSSVDACDAVLSSREEILELLRKKLLKAQASMKAQADKHRRDAPLMVGSWAYVKLQPYKQISLTGERYHKLSKRFYGPYLITARIGPVAYKLDLPQHSKIHNVFHCSKLKPHVGDPPKEADVLPAECVDNHPLISPLAVIGRREIEVDGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKF5</accession>
    <name>A0A392MKF5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">mannose-1-phosphate guanylyltransferase</fullName>
            <ecNumber evidence="3">2.7.7.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0008074</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Nucleotide-sugar biosynthesis; GDP-alpha-D-mannose biosynthesis; GDP-alpha-D-mannose from alpha-D-mannose 1-phosphate (GTP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.13" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010011746">
        <property type="protein sequence ID" value="MCH87208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKF5"/>
    <dbReference type="UniPathway" id="UPA00126">
        <property type="reaction ID" value="UER00930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004475">
        <property type="term" value="F:mannose-1-phosphate guanylyltransferase (GTP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009298">
        <property type="term" value="P:GDP-mannose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06425">
        <property type="entry name" value="M1P_guanylylT_B_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.550.10:FF:000013">
        <property type="entry name" value="mannose-1-phosphate guanyltransferase beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056729">
        <property type="entry name" value="GMPPB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045233">
        <property type="entry name" value="GMPPB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25087">
        <property type="entry name" value="GMPPB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="8">
        <location>
            <begin position="2"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="Mannose-1-phosphate guanyltransferase C-terminal" evidence="9">
        <location>
            <begin position="217"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF25087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH87208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="327" mass="35916" checksum="C1A0BCF0D38B02B0" modified="2018-12-05" version="1">MFQIEALKAAGVTEVVLAINYQPEVMLNFLKDFEAKIGIKISCSQETEPLGTAGPLALAREKLIDDSGEPFFVLNSDVISEYPLNEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSSKLASGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVEPGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKW7</accession>
    <name>A0A392MKW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diacylglycerol kinase 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012996">
        <property type="protein sequence ID" value="MCH87833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:ATP-dependent diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007200">
        <property type="term" value="P:phospholipase C-activating G protein-coupled receptor signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000756">
        <property type="entry name" value="Diacylglycerol_kin_accessory"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00609">
        <property type="entry name" value="DAGK_acc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Diacylglycerol kinase accessory" evidence="1">
        <location>
            <begin position="48"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11285" checksum="C2EEA3471A0DAC2B" modified="2018-12-05" version="1" fragment="single">MRMKTPKHGACDPIAPLELPHSLHAFHRVSETDELNIEGCHTFRGGFWNYFSMVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFLASLTHPPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKW8</accession>
    <name>A0A392MKW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative pectinesterase/pectinesterase inhibitor 12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0007776</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011181">
        <property type="protein sequence ID" value="MCH86914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00545">
        <property type="reaction ID" value="UER00823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030599">
        <property type="term" value="F:pectinesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042545">
        <property type="term" value="P:cell wall modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045490">
        <property type="term" value="P:pectin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000070">
        <property type="entry name" value="Pectinesterase_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31707">
        <property type="entry name" value="PECTINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01095">
        <property type="entry name" value="Pectinesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0063">Aspartyl esterase</keyword>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Pectinesterase catalytic" evidence="6">
        <location>
            <begin position="7"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH86914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22291" checksum="EC915A1FF6C4F5C1" modified="2018-12-05" version="1" fragment="single">MCVNADIRGKGFMAQNIGFVNSAGXXXXXXXXXXXXXXXXXXXXXXXXXXQDTLWAVSGRQFYKNCEIYGTVDFIYGNAAAVFQDCMIYARYRQFVTFTAQSRESPNEKTGFTFQRCKFSMSPEDENKKSEVVRATLGRPWRAYSTVAILQCYIDSMVDPGGWEQMPGQPIDKVTYVEYKNVGPGSNTDGRVNWPGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ML87</accession>
    <name>A0A392ML87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013846">
        <property type="protein sequence ID" value="MCH88276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ML87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="38"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21592" checksum="41BC8F3E481AF0E9" modified="2018-12-05" version="1">MGPEALRSEIATQSMALLKLIEVATFLNGRECKYLEERDEARKELPLLKRKLAESEASCEVFREERKTISANLKEAEDRLKTVSEERDSAVQKADEQKVLIGELEGKLERLQVTGVVEDGEKELAPQGVYASSSRVALIAMIQELESNMVAAATFSFNNAVAQLRILNPGLVEEGLDEEKEVRDGAIVTPSDDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLK2</accession>
    <name>A0A392MLK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DEAD-box ATP-dependent RNA helicase 31-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0009261</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014050">
        <property type="protein sequence ID" value="MCH88377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050079">
        <property type="entry name" value="DEAD_box_RNA_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959:SF1">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE RHLE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH88377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19002" checksum="15D7A5ABDC020056" modified="2018-12-05" version="1" fragment="single">ILVATPGRLRDHIDSTAGFPSRLMGVKALVLDEADHLLDMGFRKDIDKIIASVPKQRQTLMFSATIPDGVHQVCKIALKKDFEFINTVQEGTEETHAKSVSILDEKVFPVKFRDEHRGKMIGKCTMGWGKEMIAQNIINGSELWKWRCNRKGCGLSGDCWSLGGCLASPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM78</accession>
    <name>A0A392MM78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014249">
        <property type="protein sequence ID" value="MCH88481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5424" checksum="74F875B9DA7E2F25" modified="2018-12-05" version="1" fragment="single">MLSIAAATTAIAARRVKNEGYRVSIWRSGHPGCCGRYFGEAGDIAGRGRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMB7</accession>
    <name>A0A392MMB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009528</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014549">
        <property type="protein sequence ID" value="MCH88637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="27575" checksum="6EC6971DEEBF9FA5" modified="2018-12-05" version="1">MHVIEYDGKSLLNNNQDQNVDTAHPQALMGSLEYPNSIQQTSIHSLPQPEHTGQPSMDTGATVGGYHDSTTTSFSMQSQNTNLNSSIQFDDNAFSLQSQLMSAPHQVQLPRNENGLSLGLPQTATHGFQTASISNSTYGGVEDFFPEEEIRIKSHEMLENDDMQHLLRIFNLGNHAHASFNAHEDGYPNSSAYMPANHMSYNFDDEPNRSSGKAVVGWLKLKAALRWGIFVRKRAADRRAQLIELDDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMR8</accession>
    <name>A0A392MMR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Replication protein A 70 kDa dna-binding subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009280</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the replication factor A protein 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014096">
        <property type="protein sequence ID" value="MCH88395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04476">
        <property type="entry name" value="RPA1_DBD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047192">
        <property type="entry name" value="Euk_RPA1_DBD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013955">
        <property type="entry name" value="Rep_factor-A_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165:SF4">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08646">
        <property type="entry name" value="Rep_fac-A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Replication factor A C-terminal" evidence="7">
        <location>
            <begin position="57"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="269"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH88395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="33454" checksum="B3711258076BA5AD" modified="2018-12-05" version="1">MLLISLTDSSENPSPLTFTQLSVESSVQPLDEFLYNTPRITLQGVKDATNESSHVVVAIVKRILNSDSYWYTACVCSKAVIPDSRMFYCEKCNKHVQRVVPRFCIKVRVMDHTDSATFVIFDKEASLIFNMSCAEMIQGGEPAVADGLVPPQIDDTMITDYESLSGTSRKAKGLILEGTPVGVSQDLMMKFSSAVVNLDDDAIEPVCLEQADSSTVKNTFAGASVKNTSAGAVVKNTSAGAAVKITSXGSAVKITSAGAAVNVESSASVRPCGQRKKSVSKSVSPQHEDKEDGDDNAPIKLLKRAVKIEKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MN71</accession>
    <name>A0A392MN71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Microfibrillar-associated protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015236">
        <property type="protein sequence ID" value="MCH88992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MN71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033194">
        <property type="entry name" value="MFAP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009730">
        <property type="entry name" value="MFAP1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15327">
        <property type="entry name" value="MICROFIBRIL-ASSOCIATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06991">
        <property type="entry name" value="MFAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Micro-fibrillar-associated protein 1 C-terminal" evidence="2">
        <location>
            <begin position="98"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="222"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="325" mass="39152" checksum="B3C5DA8699995BED" modified="2018-12-05" version="1" fragment="single">KDDRRLRRLAESRIDNREEVRADHRRIRQAEIISTIEEEERRQEGLELEEQDEDAMAERRRQLKEKLLQREQEEALPQEEEEEEEEEEVEEESEYETDSDEEYTGVAMVKPVFVPKSERDTIAERERLEAEEEALEEGRKRRLEERRIETKQIVVEEIRKDQEIQKNIELEANIADVDTDDEINEAEEYEAWKVREISRIKRDREDREALLKEKEEIERVRNMTEEERREWERKNPKPSQSSKQKWRFMQKYYHKGAFFQSNPDDRAATVGTDNIFARDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWSHLVNEDTTDWNAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNL2</accession>
    <name>A0A392MNL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Importin-9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009696</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014881">
        <property type="protein sequence ID" value="MCH88803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16619" checksum="EFCF1BDD60EF3043" modified="2018-12-05" version="1" fragment="single">MIAGEIQGAYQIKVTTSALALLLNSKHSELEKTRVQGHLIKSATGITTRSKAKSTPDQWVMLPLPTKIVALLADALTEIQEQVLAGEDEDSDWEEVQTDVIDNDKEFLSSVSALGKPSYEHLEAMAKVFNEDQDDQYEDDLLYVADPLNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNV0</accession>
    <name>A0A392MNV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA repair protein REV1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015616">
        <property type="protein sequence ID" value="MCH89167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7510" checksum="E23158DF995C0472" modified="2018-12-05" version="1" fragment="single">MDKQKHPMGHDKQNMDGTSSHECRDLRGSSVQMDNNIQDNQASADRISTPPPLCHLDVEVIRNLPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR35</accession>
    <name>A0A392MR35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin-protein ligase MARCH1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010906</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017381">
        <property type="protein sequence ID" value="MCH90000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46347:SF2">
        <property type="entry name" value="OS02G0132300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46347">
        <property type="entry name" value="RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11943" checksum="940E0B19B27D21EA" modified="2018-12-05" version="1" fragment="single">VVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRE9</accession>
    <name>A0A392MRE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010787</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017113">
        <property type="protein sequence ID" value="MCH89883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6540" checksum="DA90112DD9366FCB" modified="2018-12-05" version="1">MVSVMQSVRNNYLLVINECAARLVGNEGTDDELVAEITDGELVEINVLREMKRELFVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRR9</accession>
    <name>A0A392MRR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017682">
        <property type="protein sequence ID" value="MCH90141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45613:SF207">
        <property type="entry name" value="OS08G0300700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45613">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="76"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="111"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="146"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="181"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="24206" checksum="BB507F7AA1450EA6" modified="2018-12-05" version="1">MAMAPNVRSYSIMINGFCKIKMVDEALSLFTEMHCKGIAPNTVTYSSLIDGLCKSXRISHAWELLDQMHDRGQPANVITYSSLLHAICKNRHVDRAITLVKKIKNQGIQPNMCTYNILIDGLCKEGRLQDAQEIFQDLLIKGYSLTVQTYTIMINGFCLEGSFDEAMTLLSKMEDNGCLPNVVTYEIMIRALFVNYENDKAKKLLREMIARGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRT1</accession>
    <name>A0A392MRT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017862">
        <property type="protein sequence ID" value="MCH90227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46519">
        <property type="entry name" value="RING/U-BOX SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46519:SF3">
        <property type="entry name" value="RING_U-BOX SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="51"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="28278" checksum="F73D46A71041B56F" modified="2018-12-05" version="1" fragment="single">SQVQGRPGEVLLEQRNNGLVVDLSLEDTPDTPEIEERHDLEDAVLGETESETWSQSQSQTESHDGHEDLNNSSCENSSVFGEGERERVRRIFREWMNNGSRDRGSNISRRSNSPRGEWLGETEQERVRVIREWVQMSSQQRSVSTAENTEQPCAEIGTQIERVRDGLVVNRSEGQNEHIRRGMRKLRGKQVMLDMLMKAERERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSVDHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRV1</accession>
    <name>A0A392MRV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015281">
        <property type="protein sequence ID" value="MCH89014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7112" checksum="92CEE51F75173E9F" modified="2018-12-05" version="1" fragment="single">MVFAAGAWHVAVSVGMASFADEDKADTVVWDMGMKNVKVHIGMAKPKDGWLLQDDPSPLLNLKASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSF0</accession>
    <name>A0A392MSF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formin-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017305">
        <property type="protein sequence ID" value="MCH89965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045010">
        <property type="term" value="P:actin nucleation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027643">
        <property type="entry name" value="Formin-like_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23213:SF392">
        <property type="entry name" value="FORMIN-LIKE PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23213">
        <property type="entry name" value="FORMIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="74"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="22401" checksum="EDBEE6A4BB8651ED" modified="2018-12-05" version="1" fragment="single">AKKDDGPLLVLTSGDYPGGTPRVVRLGSINNKEECDINKGCPFNKGRNTSNVRNLSMKAENNNNSSLVEKITTATAATTTTTTTATEDMRQQVTETSSEKPAPSSPGPLPPPPGPLPPPPGPLPTPGLPTPPPPQPPPLAPRPPPPPKGGHPPPAPPKPMAGKNKGIPLAPAKEGSSNEGDAQKPKLKPFFWEKVNAKPDQSMVWHEINAGSFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSJ0</accession>
    <name>A0A392MSJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011347</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018294">
        <property type="protein sequence ID" value="MCH90431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="2">
        <location>
            <begin position="239"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="301" mass="34844" checksum="E1F06EB4735C296B" modified="2018-12-05" version="1" fragment="single">MSKRLCSWSGRHLSIGGRVSLINSVLASLLLYFFSFFKAHICVIIQLIRIQRNFLWGGGLEDKKLCWVSWEQVCLPKKRGGLGIKDLKLFNLALLCKWKWRCITDNEAMWFDLLQFRYGHNISSLMHHENNYVGRNDSLWWRDLMRVGCPGDANWFSSNIWCVMGNGKRISFWKEKWLGTTTFCELFPGLFSKETHKTTSIADKLTRTGHGLRWVWEWSEELAGDEHCNLVVLDADTITTVHKLWKNDIPSKVGVFGWRLLQDKLPTRAALASKGIITNSHALVGERIYAWMGVHIRSRDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTI1</accession>
    <name>A0A392MTI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cucumisin-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0011704</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019045">
        <property type="protein sequence ID" value="MCH90781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MTI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041469">
        <property type="entry name" value="Subtilisin-like_FN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17766">
        <property type="entry name" value="fn3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="295"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S8/S53" evidence="10">
        <location>
            <begin position="4"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Subtilisin-like protease fibronectin type-III" evidence="11">
        <location>
            <begin position="167"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH90781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="314" mass="33980" checksum="A886364E501CD365" modified="2018-12-05" version="1">MAPVVASFSSRGPSKAAVILKPDVIAPGVDIVASWPTNTPTSDAPGDNRTFEFNIASGTSISCPHVSGAAADIKSFHPTWSPAAIRSALMTTANNQMSFGNNRDTEFGYGAGQINPVNARNPGLIYDANVDDYIRFLCSYGYSTTTLQQLTRDHITCSNATHTSTRDLNYPSFTLKAPSPKQHFNGSFRRIVTNVGLPLSTYRAIVTAPEGLQISVNPDVLSFTSLGEKKTFVLSVEGAMEEAFRSASLTWDCGDFKVRSPIVVYDVRAEKEQVYPSLNEQGQSSSPNSHVPVKVIVLCAIFSFILISIVIYII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVK5</accession>
    <name>A0A392MVK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Abscisic-aldehyde oxidase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020196">
        <property type="protein sequence ID" value="MCH91333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.365.10">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046867">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908:SF132">
        <property type="entry name" value="ALDEHYDE OXIDASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20256">
        <property type="entry name" value="MoCoBD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="Molybdenum cofactor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde oxidase/xanthine dehydrogenase second molybdopterin binding" evidence="2">
        <location>
            <begin position="6"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19418" checksum="81305F60FCD8DEB7" modified="2018-12-05" version="1" fragment="single">MLMHNIANVEIDLLTGETRFLQTDIIYDCGQSLNPAVDLGQIEGSFIQGLGFFMLEEYDTNLDGLVLQDGTWNYKIPTIDTIPQQFNVEILNSEHHQHRVLSSKASGEPPLLLAASVHCATRSAVKEARKQLLSWSNLDGSDSTFQLGVPATMPVVKELSGLDIVQRYLKWKMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVT9</accession>
    <name>A0A392MVT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Testis-expressed sequence 11 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019746">
        <property type="protein sequence ID" value="MCH91125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090173">
        <property type="term" value="P:regulation of synaptonemal complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039057">
        <property type="entry name" value="Spo22/ZIP4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40375">
        <property type="entry name" value="SPORULATION-SPECIFIC PROTEIN 22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40375:SF2">
        <property type="entry name" value="SPORULATION-SPECIFIC PROTEIN 22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="368" mass="40859" checksum="09EFBF74FA14D133" modified="2018-12-05" version="1" fragment="single">MTTCLDFQPDFLSLSAHEAVACSARPVAVASLSTMLNLYASGKSMPTAEVTVMRTLVTVLSQESGNEQKVLKTLKHAHTRASELGPDCFFGKEEVGRRERNWFAVTSWNFGTKTGQDKNYELSAEFLRLASNFYDLVKGSNDENNVMVCKSLVLSVSSMIASEFQRKTAMSETEVKQAVTLLDRAGQMLKSISSGNSVXXXXXXXXXXXLFFIYTFCAYDVQGRLNDLGSQLFTVKSFASSKVCKPKYLLQIGLYASQGPRSNHEVATFALNECLSSFLSSPVPDYQNVALVVRKLIAIASIHKGDKDDDLVYSMYKQAYRIMVGLKEGEYPIEEGKWLAMTAWNRAAVPVRLGQIEMGKKWMNVGFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW77</accession>
    <name>A0A392MW77_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Conserved oligomeric Golgi complex subunit 6</fullName>
            <shortName evidence="1">COG complex subunit 6</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Component of oligomeric Golgi complex 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0012687</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for normal Golgi function.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the conserved oligomeric Golgi complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the COG6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021112">
        <property type="protein sequence ID" value="MCH91757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017119">
        <property type="term" value="C:Golgi transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006891">
        <property type="term" value="P:intra-Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010490">
        <property type="entry name" value="COG6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048368">
        <property type="entry name" value="COG6_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21506">
        <property type="entry name" value="COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21506:SF0">
        <property type="entry name" value="CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06419">
        <property type="entry name" value="COG6_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0653">Protein transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Conserved oligomeric complex COG6 N-terminal" evidence="2">
        <location>
            <begin position="12"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU365075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11350" checksum="B67FC24E4ED91F77" modified="2018-12-05" version="1" fragment="single">MLYKISNFLLKNKIAKALNSCSASTGDIISTTERLKQELETTTQRQEIVTCFLRDYQLSPEEINALRDEDLNENFFKALSHVQEIHANCKVLLRTHHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWU8</accession>
    <name>A0A392MWU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome P450 94A1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0011666</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018968">
        <property type="protein sequence ID" value="MCH90744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24296">
        <property type="entry name" value="CYTOCHROME P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH90744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15786" checksum="35EFFBF4AB3B5632" modified="2018-12-05" version="1" fragment="single">PVDTKEAAYDDVLPNGTLVKKGWRLTYHVYAMGRSEKIWGSDWAEFRPERWLSLDEDGKWSFVGMDIYNYPVFQAGPRVCIGKEMAFLQMKRVVAGIMRQFRVVPTMVEGVEPEYTAYLTSLMKGGFPVKIEKRSHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX29</accession>
    <name>A0A392MX29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vicilin-like antimicrobial peptides 2-1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012482</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020658">
        <property type="protein sequence ID" value="MCH91555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050253">
        <property type="entry name" value="Seed_Storage-Functional"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31189:SF13">
        <property type="entry name" value="CUPINCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31189">
        <property type="entry name" value="OS03G0336100 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="13891" checksum="78F9FA588431A17C" modified="2018-12-05" version="1" fragment="single">MPSSPGSAPLNFEAFFGPAGRNPESVLTAFSSKVLQAAFKTSKGKLESVLDEQKKERIFKIPKEDVRGLAPKKSIWPFGGQFKGPFNIFSNNPSFSNQFGSLFEVGPSESKSGLEGLNLMLSFANITK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYT3</accession>
    <name>A0A392MYT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023187">
        <property type="protein sequence ID" value="MCH92671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6606" checksum="3C5ECAB5C460934D" modified="2018-12-05" version="1" fragment="single">ATEERYNNKGAYVVLXPPNFDNPIFHGFSAVTPRPKANPYYDFEEVLDSDEELDLASM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZL6</accession>
    <name>A0A392MZL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022001">
        <property type="protein sequence ID" value="MCH92148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021788">
        <property type="entry name" value="CPP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33372:SF11">
        <property type="entry name" value="DNAJ (DUF3353)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11833">
        <property type="entry name" value="CPP1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17207" checksum="DD8C5346FE2F097F" modified="2018-12-05" version="1" fragment="single">VFPRINVNDPYKRLGISKEASEEEIQGARNFLIQKYAGHKPSVDSIESAHDKIIMQKFYERKNPKIDVKKKIRAVNQSRFVQAVRGRFRTPSTTVILKTSLAFLLLGVLTVLFPTEEGPTLQGWSIYLFMAVGNLLDGVSNSSYSFNQGTKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3A6</accession>
    <name>A0A392N3A6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026794">
        <property type="protein sequence ID" value="MCH94211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3A6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GAG-pre-integrase" evidence="1">
        <location>
            <begin position="54"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14679" checksum="DC7046D86397D9AE" modified="2018-12-05" version="1" fragment="single">LENVLLVKGLTANLISISQLYDQGMKVNFTKSECLVTDDKDDLLMKGVRSKDNCYLWVPQEEANLATCLIAKKDEVKLWHQKVGHLNLRSMKNAISEEAIRGLPKLKIEEGNICGECQIGKQTKMPHQKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N557</accession>
    <name>A0A392N557_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Callose synthase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015677</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027970">
        <property type="protein sequence ID" value="MCH94712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N557"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046527">
        <property type="term" value="F:glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741:SF48">
        <property type="entry name" value="1,3-BETA-GLUCAN SYNTHASE COMPONENT FKS1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741">
        <property type="entry name" value="LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13077" checksum="F6344878E1F7425D" modified="2018-12-05" version="1">MLLIKLTGCAQLTKAYQTANVLFEVLKAVNMTQSMEVDREIQAAVYALRNTRGLPWPNDYKKKKDEDILDWLGSMFGFQKHNVANQREHLILLLANVHIRQFPKPDQQPKGGGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5G6</accession>
    <name>A0A392N5G6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027261">
        <property type="protein sequence ID" value="MCH94405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5G6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10407" checksum="FAC8BC6E94DDA4B5" modified="2018-12-05" version="1" fragment="single">DSIQGISRRWCYKLMIKAKRTTQINQKVQKLDGSSSASTINIQQNQLTAGPAKQAKIIDCSTSSGGEFGGLALLWNSDSVDVEINEHDLNYFWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5H8</accession>
    <name>A0A392N5H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrin-linked protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025686">
        <property type="protein sequence ID" value="MCH93744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007229">
        <property type="term" value="P:integrin-mediated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0401">Integrin</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="154"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="301" mass="33239" checksum="2A19F22377E06666" modified="2018-12-05" version="1" fragment="single">YEMFAYKVVEKGKINNQNQSNTPTKDKCCECEPTKDEAIVCGEENEQSTVFTDANASIMEDLTAYPKSIFVDTQSSSSDSPPRKSVTIKTPLEMKSKKDQGTRKLQATRSLPPSLSGRISRTNKVNPSSMASSPLSPGKRRPTNVSSESERKGNQSPLVSTSSTARRKIYEGGNVSDSKPSLKLKTRDQSPFNSLKTRKPQLPLNPSSSPTRIRRVKSTNNASNVRMQKGFISTPPMSPSRTFISKKSGHVSDMDTLKIRGRLSAYGLSPLSPYLRNHKTKRESMSPLSPYVRETCGHVSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N618</accession>
    <name>A0A392N618_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0014888</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026105">
        <property type="protein sequence ID" value="MCH93934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N618"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000690">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF456">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="30"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="92"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="194"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="401" mass="45391" checksum="1041C6C125EA55C8" modified="2018-12-05" version="1">MIRGYLRCGEDDDDGLKFAWSLFVKMPEKDLVSWNTMIDGCVKRGKMDDAQVFFDVMPERDLVSWVTMIDGYAKSGDVVAARSLFDEMPRRDVICCNSMMAGYVQNGYCVEALKLFYDMRRATDMLPDDTTLLIVLTAVAQLGRVEDGVAIHRYLMDNGYSLSDNLGVALIDMYSKCGSIDNAISVFENIEQKCVDHWNAMIGGLAIHGMSEMAFDFFMEMERLCIIPDDITFIGVLSACRHAGMLKEGLICFELMQKVYNLQPKLQHYGCMVDMLSRAGHVEEATKLVQKMPIEPNDVIWKTLLSACQIHENVYIGKVIAQQLIQLKSCSASSYVILSNIYASLGMWDNVRRVRIEMKERNLGKIPGCSWIELEGNVHKFSVQDRTHPHVNEIYSLLSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB30</accession>
    <name>A0A392NB30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Succinate dehydrogenase (Ubiquinone) flavoprotein subunit 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0017680</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032980">
        <property type="protein sequence ID" value="MCH96691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006121">
        <property type="term" value="P:mitochondrial electron transport, succinate to ubiquinone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-dep_OxRdtase_2_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632:SF51">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="FAD-dependent oxidoreductase 2 FAD-binding" evidence="3">
        <location>
            <begin position="4"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH96691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="8845" checksum="DC1F05FDD2019C37" modified="2018-12-05" version="1" fragment="single">MDSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCQ1</accession>
    <name>A0A392NCQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033355">
        <property type="protein sequence ID" value="MCH96818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF30">
        <property type="entry name" value="TIR-NBS TYPE DISEASE RESISTANCE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18156" checksum="7FBD92993989E5DF" modified="2018-12-05" version="1" fragment="single">VVTKSKLEALFAGLGSLTSLHLKDCFNLLELPANISSLSSLQELRLDGSSVKELPASIKYLSELKVQSLDNCSNLSFLPELPSSIKXFKADNCTSLMKVSTLKTFSVNMIGQTKYISLKNSIKLELDGPSLDCITEDAMLMMKSAAFHNDAEFQDSSNTDQPHILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDH4</accession>
    <name>A0A392NDH4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018923</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036272">
        <property type="protein sequence ID" value="MCH97926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="122" mass="14066" checksum="62F276F8DE50A645" modified="2018-12-05" version="1">MMEVYMDDMIVKSVVEHLRESHLFAVFQRVRQHNMCLNPKKCTFGIKASKILSFYLTERGIEENLDKCEAVIKMETSTSKERIIKLNMMLTTLNRFISCSAQHALITKVPFPPGFTVPDQVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDZ1</accession>
    <name>A0A392NDZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cation/H(+) antiporter 15-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0017763</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. CHX (TC 2.A.37.4) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033219">
        <property type="protein sequence ID" value="MCH96774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902600">
        <property type="term" value="P:proton transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050794">
        <property type="entry name" value="CPA2_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468">
        <property type="entry name" value="CATION/H + ANTIPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468:SF26">
        <property type="entry name" value="CATION_H(+) ANTIPORTER 15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0630">Potassium</keyword>
    <keyword evidence="3" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="14"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="81"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="229"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Cation/H+ exchanger transmembrane" evidence="11">
        <location>
            <begin position="1"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00038341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH96774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="30448" checksum="058D7DCC764A22E3" modified="2018-12-05" version="1" fragment="single">MDASSLRRIGKKSFTIAIAGMILPFGTGALFSIFWLKNDGDGTNTTAFILLLGVILSVTAFPVLARILAELKLINSELGRVALSSALINDVLSWVLLAIAIALAENERVTLASFMVVLSSAAFVAFNAFVVRPIIMWIIRKTPEGESFSDFYICLILAGVMISGFITDAIGTHSVFGAFVFGLIIPSGPLGFALIEKLEDFVSGLLLPLFFAISGLKTNVGLINGFSTWAILIILVILACVGKVAGTLIIALSYQMSLTEGAALGMLMNTKGLVEILVLNIGRDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHI7</accession>
    <name>A0A392NHI7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pre-mRNA-processing factor 19</fullName>
            <ecNumber evidence="1">2.3.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018972</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair. Required for pre-mRNA splicing as component of the spliceosome.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.</text>
            <dbReference type="EC" id="2.3.2.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat PRP19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.27" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010036376">
        <property type="protein sequence ID" value="MCH97974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHI7"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000974">
        <property type="term" value="C:Prp19 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071006">
        <property type="term" value="C:U2-type catalytic step 1 spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061630">
        <property type="term" value="F:ubiquitin protein ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070534">
        <property type="term" value="P:protein K63-linked ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038959">
        <property type="entry name" value="Prp19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013915">
        <property type="entry name" value="Prp19_cc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43995">
        <property type="entry name" value="PRE-MRNA-PROCESSING FACTOR 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43995:SF1">
        <property type="entry name" value="PRE-MRNA-PROCESSING FACTOR 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08606">
        <property type="entry name" value="Prp19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="1" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0747">Spliceosome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Prp19 coiled-coil region" evidence="3">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8241" checksum="D91A1513BA192788" modified="2018-12-05" version="1" fragment="single">MYGLQSVHLSLQSPNLPDLYLLAFKHDAACRVIARLKKERDEARSILAQAERQFPISTPNDATANAPVHSNGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJB9</accession>
    <name>A0A392NJB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Succinate dehydrogenase assembly factor 2 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020206</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039641">
        <property type="protein sequence ID" value="MCH99195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006121">
        <property type="term" value="P:mitochondrial electron transport, succinate to ubiquinone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034553">
        <property type="term" value="P:mitochondrial respiratory chain complex II assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12469:SF6">
        <property type="entry name" value="FLAVINATOR OF SUCCINATE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12469">
        <property type="entry name" value="PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7335" checksum="521AF711048BDD2C" modified="2018-12-05" version="1" fragment="single">WKWLSGQEQPPESISVNPVFTAVQEGVMKNLDSHSSPETRATPGQPWVRGWDDIQKFRGGPSTGNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNQ6</accession>
    <name>A0A392NNQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAC domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046379">
        <property type="protein sequence ID" value="MCI01528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="21105" checksum="EC12C085886BE8C5" modified="2018-12-05" version="1" fragment="single">EEQASILDDMYYNPKDGLLLDDRLFSPVLAHMPQEFNYQANNESDGQYGLQYGTNEINISDFLNYNLNWDQLPCEELSSHQQNFSLFNVKDNGSGSESEAGSNMTCMQVAYPQGAIDRRFPFATTPSFSTFDHSGDDQKSNVVLLQNNFQTSFPSDVNFGEGQTDTGRTIEDKSYARYCSKENSFEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSV2</accession>
    <name>A0A392NSV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Receptor-like protein kinase feronia-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0023955</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050602">
        <property type="protein sequence ID" value="MCI02921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000039">
        <property type="entry name" value="receptor-like protein kinase FERONIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989">
        <property type="entry name" value="OS01G0750732 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989:SF62">
        <property type="entry name" value="OS05G0423500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="36"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI02921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11294" checksum="15AAD40457628A10" modified="2018-12-05" version="1" fragment="single">MEESSWKTQKEGSSSLPSHLCRYFTIAEIRAATNNFEDIFIIGVGGFGNVYKGYIDGVTPVAIKRLKPGSQQGVNEFMNEIELLSQLRHIHLVSLIGYCNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU11</accession>
    <name>A0A392NU11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050527">
        <property type="protein sequence ID" value="MCI02894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF35">
        <property type="entry name" value="ASPARTIC PEPTIDASE DDI1-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="272"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="unsure residue" description="E or Q" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="282" mass="32957" checksum="AF7E832212034F91" modified="2018-12-05" version="1">MEITLADQSVIHSCGMVEDILVKIKDLICPADFVILDVGVDDESQVILERPFLATSHACTNMDDGELMLRSGEVRRTIKVCIKPNAHCCKVGARERELEGAPLVLNQEWEETSPEREXRLEREWMENTSLWETDPYEYTGLDKPMEFRESTTLTNEERMDLLREEAVEKWLEEMKTKWKPPYLETTPFTPRPKTKEHKEWVKRWNKCYKVATKSKFGVLKKPNKRRIAKKNKKQLETIQEWLEGRPMVVVLDEASDAETNEWEAHSEDSDESSLQNELTYPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NW52</accession>
    <name>A0A392NW52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024714</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052899">
        <property type="protein sequence ID" value="MCI03674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NW52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF99">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15187" checksum="80247D1E0A0FC3B2" modified="2018-12-05" version="1" fragment="single">MKIIEQTVGGYDCLEFALSSKKEQIICHDYNLTTFTSEEDQYTSLMEGPWLIYDHYLSVCEWSPTFNPRSDAIEKAAMWVRFFGLPIEFYDARTLTFCSGLGLDAQKLRKTINWAVEQGPNEEQPTKTDPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWX6</accession>
    <name>A0A392NWX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053825">
        <property type="protein sequence ID" value="MCI03954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10257" checksum="0A375D86F9B9638F" modified="2018-12-05" version="1" fragment="single">HRAAQPPFLRTRFLPPIQVSDLVLRFMRRCQAHTNKEKGTAIAGAKPLFAVTRRRQVDCGGGEGWEKWIGGGGEVKEGDCGGEDCCWEILWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXW4</accession>
    <name>A0A392NXW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L-type lectin-domain containing receptor kinase VIII.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0025349</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054935">
        <property type="protein sequence ID" value="MCI04302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF16">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 5" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="Legume lectin" evidence="4">
        <location>
            <begin position="26"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI04302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="238" mass="26898" checksum="01C19C101F8E31CC" modified="2018-12-05" version="1" fragment="single">PKDFDKDDDSSSRLPFDLKVIETKDVAVEFIASNKSSASFSITIKVGITPVKKINVSSFNMVIRNGGKLYAWIDYQASSRXLEVRLSXYXHSKPVDPLLSEYVDLSNNWKTEEMFVGFDSMKGRPSSQPCFLYSWSFNLRHYQRRMHTEPLDPKAFSAKNTHSPSAGKPRSDCVLKILAAMIFGAGCGALAAFTVLYLWTMFGNRRPVVPEECVMQPVDFEYKKVNIVVDKPLKDAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZC3</accession>
    <name>A0A392NZC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein argonaute 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0024916</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053538">
        <property type="protein sequence ID" value="MCI03875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50822">
        <property type="entry name" value="PIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Piwi" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="78"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI03875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12883" checksum="ACB5BF9F25F87293" modified="2018-12-05" version="1" fragment="single">YYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSRASSSSKDSSSVPPTASFEQGFYRLHADLENIMFFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P191</accession>
    <name>A0A392P191_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025622</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055833">
        <property type="protein sequence ID" value="MCI04575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P191"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="66"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="21367" checksum="CE571CC823D88A45" modified="2018-12-05" version="1" fragment="single">MDFPIKNVLRKPDLAGRMAAWSVELSEFDITFAPRGAIKSQMLADFVLEMSTPPGENSAQPWTLSVDGASNIRGSGAGVVLEDPDGVLIEQSLRFSFKASNNQAEYEALIAGMKLAKEMENSRADLLSKLASTKRPGSHRTFIQETISRPSINEEQTVMVVEADDWRSPIIRYLQRDELPPEKEEAVKIKKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P300</accession>
    <name>A0A392P300_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0027406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061542">
        <property type="protein sequence ID" value="MCI06347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P300"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF470">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="15890" checksum="4F36844CA9B91E3F" modified="2018-12-05" version="1">MPFNSSVNFLVSLPPFISRLFRVLRYLKGSLGWGLFFPRKSPIQLKGFSDVDWGGCPDSRQSISGYCFYLGVLLVSWRSKKQVTVARSSSEAEYRALAAATCELQWLHYLLTYLQVQPICQSVLYSGQSEGSQYCSQSLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PA24</accession>
    <name>A0A392PA24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pectin acetylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068695">
        <property type="protein sequence ID" value="MCI08339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PA24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF176">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="1">
        <location>
            <begin position="96"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22225" checksum="168845B1264D14F6" modified="2018-12-05" version="1" fragment="single">MTSFDIPWKCLAGDSEPKIPTKEQPKEQPKVHRTFAQALTNICEIPLSQIPQPVVKGDRLSIQIPEDDYLAGMDACKHNLHGRIIWPKGSTPLSAVALKSKLSHIWKDLSKWGVFSLGKGFYEFIFSSLEDVRRVRSVASWNLSSGLLKLFAWSNDFNPKAQHNSSAQVWVKIYGLAQEYWRKNIIFTIASSIGTPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PD37</accession>
    <name>A0A392PD37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diaminopimelate decarboxylase 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031124</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074767">
        <property type="protein sequence ID" value="MCI10033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010075480">
        <property type="protein sequence ID" value="MCI10239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PD37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="entry name" value="Alanine racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43727">
        <property type="entry name" value="DIAMINOPIMELATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43727:SF2">
        <property type="entry name" value="GROUP IV DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="PLP-binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6251" checksum="FB595307033C8A17" modified="2018-12-05" version="1" fragment="single">CIFNGNGKILEDLVLAAEAGVFVNIDSEFDLENIVAAARIAGKRVNVLLRINPDVDPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXC9</accession>
    <name>A0A392PXC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L-type lectin-domain containing receptor kinase IX.2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0037479</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100398">
        <property type="protein sequence ID" value="MCI16337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051707">
        <property type="term" value="P:response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000168">
        <property type="entry name" value="L-type lectin-domain containing receptor kinase IX.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050528">
        <property type="entry name" value="L-type_Lectin-RKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27007">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="26"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI16337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13246" checksum="64995CD7A8ACD5CA" modified="2018-12-05" version="1" fragment="single">MDSDFERSSLPKKFTFEELARATNNFAKEHKIGEGGFGGVYKGFIKDLKTHVAIKKVSKESNQGVKEYASEVKVISQLRHKNLVQLFGWCHKQNDLLLVYEFVQNGSLDSYLFKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q380</accession>
    <name>A0A392Q380_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Histone H1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0039926</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the histone H1/H5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111740">
        <property type="protein sequence ID" value="MCI18771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000786">
        <property type="term" value="C:nucleosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031492">
        <property type="term" value="F:nucleosomal DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045910">
        <property type="term" value="P:negative regulation of DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006334">
        <property type="term" value="P:nucleosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005819">
        <property type="entry name" value="H1/H5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005818">
        <property type="entry name" value="Histone_H1/H5_H15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11467">
        <property type="entry name" value="HISTONE H1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11467:SF168">
        <property type="entry name" value="HISTONE H1.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00538">
        <property type="entry name" value="Linker_histone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00624">
        <property type="entry name" value="HISTONEH5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00526">
        <property type="entry name" value="H15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51504">
        <property type="entry name" value="H15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0158">Chromosome</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="H15" evidence="8">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="58"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="58"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="93"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="110"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="170"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="188"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI18771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="21605" checksum="9EACCB303CE54B3E" modified="2018-12-05" version="1" fragment="single">DAIVTLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFXLSSKTKPSSVTTASEAKKKPAAAKPKTKPTAAKAKPASKPKAKAVVKPKAASKPKTAAVKPKTTAAKPKAAVAKPKPAAAKSKAGVKAKPKEKSAKVARTSTRTSPGKKVGTAKAAPKKVVAAKKAPVKSVKPKSVKSPAKKVSVKRGGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4J7</accession>
    <name>A0A392Q4J7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0039914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111679">
        <property type="protein sequence ID" value="MCI18759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4J7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="32"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16345" checksum="49506DD23079B915" modified="2018-12-05" version="1">MELKEDFFSFMNDFHMNGKLVKGLNNTFIALIPKKDNPANLNDFRPISLVGSIYKVLSKVLANRMKKFLPKLIDETQSAFVQGRQILDGVLIANEVIDEAKRKKRDVLLFKVVFKLTSGLKVNFHKSELMGIHVQPQWLKDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFH9</accession>
    <name>A0A392RFH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Enhancer of mRNA-decapping protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0056589</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222675">
        <property type="protein sequence ID" value="MCI35368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000932">
        <property type="term" value="C:P-body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031087">
        <property type="term" value="P:deadenylation-independent decapping of nuclear-transcribed mRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045152">
        <property type="entry name" value="EDC4-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15598">
        <property type="entry name" value="ENHANCER OF MRNA-DECAPPING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15598:SF5">
        <property type="entry name" value="ENHANCER OF MRNA-DECAPPING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI35368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9040" checksum="CBF0A929AE511719" modified="2018-12-05" version="1" fragment="single">NSKLEATVARQIQAQFQTTAKQALQDALKSSFETTVVPAFEMSCKAMFEQVDTTFQKGMAEHSNAVQQRLESGPTSLAMTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR83</accession>
    <name>A0A392UR83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099808</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952857">
        <property type="protein sequence ID" value="MCI78538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6352" checksum="7493C9E52BDB2E3A" modified="2018-12-05" version="1" fragment="single">TEEQSIATELVNDVFPISDESLPSMEEIEEKSIVDESIAVRNLTVEEVMPMSEILKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USP1</accession>
    <name>A0A392USP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100257</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963536">
        <property type="protein sequence ID" value="MCI78986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7288" checksum="F5FD399A166E76E9" modified="2018-12-05" version="1" fragment="single">KTMFVKKDFIENPEFEAFKAEVKEELSAQKSQISEIVQNQKTVAAKQDEMSADLKVILSILSQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT22</accession>
    <name>A0A392UT22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099663</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010949829">
        <property type="protein sequence ID" value="MCI78393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3959" checksum="0A1D55279D5CA525" modified="2018-12-05" version="1" fragment="single">QSDHDEGQDDPEIDRNVETLIKKFAEGLDDDDIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXX9</accession>
    <name>A0A392LXX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Calcium-transporting ATPase plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0000579</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000393">
        <property type="protein sequence ID" value="MCH79821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000011">
        <property type="entry name" value="Calcium-transporting ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006068">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF520">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00689">
        <property type="entry name" value="Cation_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Cation-transporting P-type ATPase C-terminal" evidence="7">
        <location>
            <begin position="243"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH79821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="295" mass="31916" checksum="F95AA8721A4989AE" modified="2018-12-05" version="1" fragment="single">AFFKKAIDDMAAQSLRCVAIAYRSYELDKIPSKEEDLDQWTLPEHELVLVAIVGIKDPCRPGVKEAVRLCTEAGVKVRMVTGDNPQTAKAIALECGILVSTEDAVEPNVIEGKTFRQFSEKEREEVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRRFGLIGFLTMFAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY60</accession>
    <name>A0A392LY60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000477">
        <property type="protein sequence ID" value="MCH79893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="178"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="450"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="296"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="180"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="454"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="469"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="481" mass="53080" checksum="9EEA103AED167507" modified="2018-12-05" version="1">MFIDSVWGLKERYYIVKPITPSATDSLYKTEVVTEEDGSVRLDANGLPVTRRVTRFPLKWSKKHFAVSTDSYLTKNEALSNDERVDLAKLQSYVDKLLPTRYVTKTGEPALNSKREPRVEARHINTKALLECGSKADRKMLLDNMVDFADELIKIVADQKVPKKGKKKVKSRASAVVEQSAAGGSSSPGGVSSSQAGAQSGSPVVVKLPPPKRQRDEQVIDVDALEKPFLLPRCFSSRDFMDKRPPMVADVERSIIMDMGPVALQEELAQGAAAVMRLLETALVLNDEQGSSTRGLEKLKMENGRLKAEVLKLENVLIGHRGKHEVYVAQAKELKEMNTALGNTEKDLEDLKATHVEKKKKLDDEVDNLKTVMAPVEGELASVQGKTTRAELVNVIKDLGEKVVSGVTYGFENAVAQMKVANSGLELSTEGIGVLKRVENKVIIIPDKYRQMEIDDEEEEEAEEEDNGEDGHEEGHGESDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYH0</accession>
    <name>A0A392LYH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0000765</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000580">
        <property type="protein sequence ID" value="MCH80003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF26">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="6">
        <location>
            <begin position="622"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="250"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="862"/>
            <end position="953"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="22"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="290"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="862"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="916"/>
            <end position="948"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH80003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1313" mass="145495" checksum="BE158BA618DFD74A" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYX5</accession>
    <name>A0A392LYX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000765">
        <property type="protein sequence ID" value="MCH80179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF80">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="212"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1106" mass="124700" checksum="07F1A370E7E09AA6" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ16</accession>
    <name>A0A392LZ16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ubiquitin carboxyl-terminal hydrolase-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0001002</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000819">
        <property type="protein sequence ID" value="MCH80236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006866">
        <property type="entry name" value="DUF627_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006865">
        <property type="entry name" value="DUF629"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052398">
        <property type="entry name" value="Ubiquitin_hydrolase_53/54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22975:SF9">
        <property type="entry name" value="ECHINUS SPLICE FORM 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22975">
        <property type="entry name" value="UBIQUITIN SPECIFIC PROTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04781">
        <property type="entry name" value="DUF627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04780">
        <property type="entry name" value="DUF629"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="C2H2-type" evidence="5">
        <location>
            <begin position="400"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="292"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="961"/>
            <end position="1015"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="196"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="1026"/>
            <end position="1072"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="294"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="4">
        <location>
            <begin position="976"/>
            <end position="987"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1087"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH80236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1087" mass="123565" checksum="12AE9439B757A892" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ84</accession>
    <name>A0A392LZ84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000923">
        <property type="protein sequence ID" value="MCH80323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="253" mass="28313" checksum="5413B104C7127A0E" modified="2018-12-05" version="1">MAKFLKLPIEPIPNFNVLVGNGQKITAEGKISDLTVFIQGHDITVPVFLLPFAGADLILGSSWLATLGPHVADYGALNLKFFYNGKFVTLQGQPATSPGPAQLHHLVRLQNTHAIYELFTVQCFHITTEESFTLDIPDDMPPDLAQLLLSYSHLFQTPNCLPPQRAQDHSIPLMDESKVVKVRPYRYPHSQKAQIELMVTEMLQQSIIQPSTSPFSSPIILVKKERWHLEVLHGLSCSKCSYCQGQVSFAYCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZT4</accession>
    <name>A0A392LZT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dedicator of cytokinesis protein 7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001158">
        <property type="protein sequence ID" value="MCH80526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007264">
        <property type="term" value="P:small GTPase-mediated signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026791">
        <property type="entry name" value="DOCK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23317">
        <property type="entry name" value="DEDICATOR OF CYTOKINESIS DOCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23317:SF76">
        <property type="entry name" value="LD20667P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="281"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="185"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="343" mass="37750" checksum="E5597ADEED233865" modified="2018-12-05" version="1" fragment="single">MLNMQHFGQSPLPAYEPAFDWENERSLIFGQRIPETPISQYGSPEIGMKISVKVQSLQFQAGLSEPFYGTICLYNRERREKLSEDFYFHILPTETQDAKITCDPRAIFYLDAPSASVCLLIQLEKHATEEGGVTPSVYSRKDTAHLTEREKQKLQVWSQIMPYKESFAWAIVSLFDGSIGAASVGPGSPSSPLAPSVSGSSSHEGVFETSTKVSLDGKLNYSNGNSVVVEVSNLNKVKESYTEESLQDPKRKVHKPVKGVLRLEIEKHQISQADLENISECGSATNDSVDPGDRIADSMSGKYPSNGCDDPQGSISRWNFSDAKEVLGNGANQHGNSDFNADD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M098</accession>
    <name>A0A392M098_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001443</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001331">
        <property type="protein sequence ID" value="MCH80671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M098"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF455">
        <property type="entry name" value="RLK (RECEPTOR-LIKE PROTEIN KINASE) 8, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="3">
        <location>
            <begin position="56"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="344"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="133"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="610"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="610" mass="67730" checksum="C6B6729A2F41FC25" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1J9</accession>
    <name>A0A392M1J9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001253</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001106">
        <property type="protein sequence ID" value="MCH80484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1J9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF11">
        <property type="entry name" value="ELEMENT PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="3">
        <location>
            <begin position="225"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="445"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="581"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="493"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="445"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="582"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="737" mass="84101" checksum="8FD5F015F4FDBF1D" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M216</accession>
    <name>A0A392M216_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0002106</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002154">
        <property type="protein sequence ID" value="MCH81321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M216"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF219">
        <property type="entry name" value="ARCHAEAL ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="67"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="241"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH81321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="359" mass="41277" checksum="84FC8B95B0E9BC70" modified="2018-12-05" version="1" fragment="single">NEYERNFIEKIVKDVSNKINRIPLYVADYLVGLKSRILEVNSLLNLESNDGVCIIGVHGTGDKYGLEYLQEQLLDKTVKLNIKIQNVSEGITFIRQRLSQKKVLLILDDVDKLKQLQCLIGEPNWLGQGSKVIITTRDRHLLASYGVERTYEVCGLNEEEALELFKWKVRKNKTVDSSYEYILNRAVNYASGLPLAIEVVGSYLAGQKISEWDSTLDKYERIIPTDIQSILEISYDALDEEVKSVFLDIACCFKDYRLVKVEEILHAHYGYCIKNHVVVLVEKSLIKIKHDSDVELHDLIEHMGKEIVRRESPKKPGKRSRCEKSSKKFESIGMGKISFRVSILLVFEHEVREYGTFDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3A2</accession>
    <name>A0A392M3A2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002491</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002655">
        <property type="protein sequence ID" value="MCH81699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="34"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="350"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="602"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="371"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="702" mass="77705" checksum="FFE62CE3AD4DFF5A" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3B9</accession>
    <name>A0A392M3B9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromodomain-helicase-DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002851">
        <property type="protein sequence ID" value="MCH81842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3B9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056511">
        <property type="entry name" value="IDM1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47025:SF7">
        <property type="entry name" value="ACYL-COA N-ACYLTRANSFERASE WITH RING_FYVE_PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47025">
        <property type="entry name" value="AUTOIMMUNE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23209">
        <property type="entry name" value="IDM1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Increased DNA methylation 1 C-terminal" evidence="1">
        <location>
            <begin position="7"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20572" checksum="3B3CFF01A15BDD65" modified="2018-12-05" version="1">MLWQECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQDLNGILVLRYSSMVVSLMYVRFHFASRDFRVLALSKYLKEVQLTLFNKTSVLEKTVQLVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3C3</accession>
    <name>A0A392M3C3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0002557</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the replication factor A protein 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002740">
        <property type="protein sequence ID" value="MCH81765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04481">
        <property type="entry name" value="RPA1_DBD_B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04476">
        <property type="entry name" value="RPA1_DBD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047192">
        <property type="entry name" value="Euk_RPA1_DBD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013955">
        <property type="entry name" value="Rep_factor-A_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47165:SF4">
        <property type="entry name" value="OS03G0429900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08646">
        <property type="entry name" value="Rep_fac-A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Replication factor A C-terminal" evidence="6">
        <location>
            <begin position="196"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH81765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="454" mass="50074" checksum="558BE803550697FA" modified="2018-12-05" version="1">MKTKVQVSESKEIDLYGLSLTKISDIHSEAAAPEFLVDVIGVITGMSAEREYVRDGRVVKMIVFELTDQSGKCECALFGDYVHSLQSMLGKSHDGLPVVVVQFAKIKTFRGNISIQNVINATRLFVNPAIEEADAFKNGIAVHGIETSSPIPLLGPRARPSYEEDFLLNYPKKTIVELVEKAEDGVYVVCAIVDGLVEGEEWWYPACNCHRSVVADSGAYYCKICVKHVFQMFPRYKVKFRVADSTGDAVFVVFDSDMRLLIQKDCGDLVSTFKAESSIEYPPDFQLLKGKRLLFKVEKVTTAFEQFDVSFRVKRVCNELATIEAFGVPEVTNSPTRVLSSGFSESGEESDMEHEFVEDSQNEDIVVHVAGNAGCAEASXXXXXXXXXXXXXXEVISLEDDSDAGIEVFVSAGSKLAKDAKMLAVKRNLSSVFAECHDVGETSNPSKCLKTKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5S7</accession>
    <name>A0A392M5S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Receptor protein kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0002875</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003173">
        <property type="protein sequence ID" value="MCH82078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48065:SF18">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48065">
        <property type="entry name" value="OS10G0469600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017449865" evidence="4">
        <location>
            <begin position="23"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="276"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="5">
        <location>
            <begin position="41"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH82078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="334" mass="38600" checksum="4D1140C0368FCA54" modified="2018-12-05" version="1">MGNYIPKLCYALLFILLHSALSINGYFNSTIRTKEVKCKARERKALLRFKQGLQVQDDYDMLSTWRDDEKNRDCCKWKRIRCSNETGHVLMLDLHELGNLSQLKYLNIQGNNLVDEIPCELGNLKVPKSIGLLSMLEYLILNKNSLEGEVNESHFASLSNLISRYDYYILLMWKGVEDVFKNPDLLLKSIDLSGNNLTGEIPKEIMYGIRILNRWSFLNCLGIISVLQSFGASSYEGNLGLCGKPLEKACSDDDNDVPLVFDNEIEDDESSFYETFYTSLGLGFAVGFWGFIGPLLLLWSWRYSYIRFLNRFKDGMHVMVIRCYAFIFNRMHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5U2</accession>
    <name>A0A392M5U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002738">
        <property type="protein sequence ID" value="MCH81764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23075" checksum="783CAC99F6CD8DC3" modified="2018-12-05" version="1">MLWCLWRGRNQGAFEERMDDYNILIDEIKVLSWRWFLSDEKVNRCLLYEWLIEPVLCIRRQQLTCDSAARSLAGGVLVGYLSLLPTTTIVEIERMLNDFRLGGGVNNNGVVGVSERVFGVEMRLGLXSSDIINRLPIMQNAFDLLFAICSNDDQLIVGRVAMLVWTGMRHLLWRNESGKFLFGSVIVGKGLVRSGSSATSMRSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5V5</accession>
    <name>A0A392M5V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Polygalacturonase non-catalytic subunit AroGP2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0002905</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
            <location evidence="2">Extracellular space</location>
            <location evidence="2">Apoplast</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003218">
        <property type="protein sequence ID" value="MCH82108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004873">
        <property type="entry name" value="BURP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051897">
        <property type="entry name" value="PG-associated_BURP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31458">
        <property type="entry name" value="POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31458:SF13">
        <property type="entry name" value="POLYGALACTURONASE NON-CATALYTIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03181">
        <property type="entry name" value="BURP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01045">
        <property type="entry name" value="BURP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51277">
        <property type="entry name" value="BURP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0052">Apoplast</keyword>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="BURP" evidence="7">
        <location>
            <begin position="123"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH82108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="309" mass="35329" checksum="A9A93B55D9EC2328" modified="2018-12-05" version="1" fragment="single">CYDFYDMVVQVALAAAGEVVPEYHTEKDLIQKYWKKHIKNNFSPPTFLMNQASPLTLADSKKYQELVAGGNLQSVISDFCSDAGLFCNVGHFLGDAFFYHQFSKEKYDVLEHETLEVPFPGIFFRERQIKEGTIMMMGDIQDMTLKRYFLPRSLASKLPFSSSKMGEMKKMWNKVFDEKTLDKMIKYSTYECQRKAARDETKLCANSIEDIIDFSKSLLGPNITVRTTENGNGAMENILLGHIKAINGGNVSRSLTCHAYLFPYMMYYCHSVPAVRIYDVEILDIKNKTKINQAIIFPKSNLFPKSSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M687</accession>
    <name>A0A392M687_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative LRR receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003743</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004395">
        <property type="protein sequence ID" value="MCH82930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M687"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000039">
        <property type="entry name" value="receptor-like protein kinase FERONIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989">
        <property type="entry name" value="OS01G0750732 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47989:SF62">
        <property type="entry name" value="OS05G0423500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="22668" checksum="A407905B32140B42" modified="2018-12-05" version="1" fragment="single">GYGKVYKGILSNGTVVAIKRAQQGSLQGEKEFLTEISILSRIHHRNLVSLVGYCDEEGEQMLVYEFMSNGTLRDHLSVTSEKPLTFAMRLKIALESAKGLVYLHTEAEPPIFHRDVKSSNILLDSKFTAKVADFGLSRLAPVPDVHGIIPGHVSTAVVGTPGYLDPEYFLTHAFTNKSDVYSLGVVFLELLTGMHAISHGKNIVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M762</accession>
    <name>A0A392M762_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Transposon Tf2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0004121</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004948">
        <property type="protein sequence ID" value="MCH83302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M762"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="12">
        <location>
            <begin position="370"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="686"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH83302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="686" mass="78749" checksum="8A9ACA799F64C7C9" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M788</accession>
    <name>A0A392M788_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004505">
        <property type="protein sequence ID" value="MCH83003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M788"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="16679" checksum="611EC68A94B8DC04" modified="2018-12-05" version="1">MAAQWKGSTNISWLLSQAAQHPCSHSAHANNSSSGDPLLGNTASCDFAFSNLAFDNHAFGDPVSDNPAPRSPASCDFAFGNFASNNLAFGGPVSGTPGSSNPASCDATFGNLASNNHVVENGPMKCQQWQGNQGLLLQTKGTVIEFSREGFFRNRKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7K4</accession>
    <name>A0A392M7K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004945">
        <property type="protein sequence ID" value="MCH83301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11709" checksum="D061F32993E47417" modified="2018-12-05" version="1">MEIGSSYIDSPSYDSSDHDVPDFDGAVGGNSNVEHKFVIPHYFRPRCGLGMPNFGILAEEGGGEIATYHVALPGEVFVCHWKCFVSDGIRKCGSSGTNRVTGLSIRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7M2</accession>
    <name>A0A392M7M2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004981">
        <property type="protein sequence ID" value="MCH83321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7M2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="99"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14088" checksum="DFC01A842C51C066" modified="2018-12-05" version="1">MGGMITVRRVSRRRLPSRTKPDSSSFLNSPLVMCSSSTTGEKEITNNNSNSEPHSHLTKCSSSTIGGEKGTTKQSSDSDFNSTVKAAVKDQKKGKKRNKSQDSRDGSEERKGKKTKKEVTPDIEKLAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7Y7</accession>
    <name>A0A392M7Y7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ribonuclease J-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004231</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005151">
        <property type="protein sequence ID" value="MCH83411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7Y7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10710">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042173">
        <property type="entry name" value="RNase_J_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055132">
        <property type="entry name" value="RNase_J_b_CASP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43694">
        <property type="entry name" value="RIBONUCLEASE J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43694:SF1">
        <property type="entry name" value="RIBONUCLEASE J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22505">
        <property type="entry name" value="RNase_J_b_CASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Ribonuclease J beta-CASP" evidence="5">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="Zn-dependent metallo-hydrolase RNA specificity" evidence="4">
        <location>
            <begin position="77"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF22505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18249" checksum="90D378D7CEB7133A" modified="2018-12-05" version="1" fragment="single">VKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSTIVMGNNKFLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIHHTAVIKNGEMLGVSHLRNRKVLSNGFISLGKENLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Y3</accession>
    <name>A0A392M8Y3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004066</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004865">
        <property type="protein sequence ID" value="MCH83248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="217"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="363"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="374"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH83248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="577" mass="67149" checksum="ED9CBD35F19EF549" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Z0</accession>
    <name>A0A392M8Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004787</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006018">
        <property type="protein sequence ID" value="MCH83957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="7202" checksum="06E9D20BE833C112" modified="2018-12-05" version="1" fragment="single">MIRTWSIVSQFRFRIWSLQSVCIISQFRFSVGIMNDRWSTGFWFINDGWCVAFRFIRAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M954</accession>
    <name>A0A392M954_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005670">
        <property type="protein sequence ID" value="MCH83739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M954"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="6"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10351" checksum="0594A3E580C73626" modified="2018-12-05" version="1">MNTYDATEGVEERAGCGGLLHDEHGNWLCGFAQPHRNTNYYLAELWEDWQGLLLVRIKGYSKVDLQLDSMIVVHKFWRQDTWNIQRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9A5</accession>
    <name>A0A392M9A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004172">
        <property type="protein sequence ID" value="MCH82774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5895" checksum="3EB3B3F92352775E" modified="2018-12-05" version="1">MARVMTTDDGEVTISTIETDVTSTNFPSVERNPQSGDGNPLSQHSKATIWVIRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAI5</accession>
    <name>A0A392MAI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Paired amphipathic helix protein Sin3-like 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0005352</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006954">
        <property type="protein sequence ID" value="MCH84520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1160.11:FF:000001">
        <property type="entry name" value="Paired amphipathic helix protein Sin3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1160.11:FF:000003">
        <property type="entry name" value="Paired amphipathic helix SIN3-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1160.11">
        <property type="entry name" value="Paired amphipathic helix"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003822">
        <property type="entry name" value="PAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036600">
        <property type="entry name" value="PAH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039774">
        <property type="entry name" value="Sin3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12346:SF0">
        <property type="entry name" value="SIN3A, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12346">
        <property type="entry name" value="SIN3B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02671">
        <property type="entry name" value="PAH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47762">
        <property type="entry name" value="PAH2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51477">
        <property type="entry name" value="PAH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH84520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="328" mass="37494" checksum="FFFA63EAA5339114" modified="2018-12-05" version="1" fragment="single">MRSDVSYQQLCLNRSIHGLIFNFYWSGQPQMMNGAGQKLTTNDALAYLKAVKDIFQDKRDKYDEFLEVMKDFKGQRIDTVGVIARVKDLFRGHTDLILGFNTFLPKGYEITLPIEDEQPHPKKPVEFNEAMSYVNKIKTRFRGDDRVYKSFLEILNMYRKENKSIDAVYQEVAALFEDHPDLLDGFIQFLPDATTAASTHAAARNSVFRDRRSAMPTVRQVHVEKCCSRHYSHFVQIPFRNGATVGTIATLSVREKGPLFHMVTVTPVLTVLTQSMMEVCSGLKRSIRDVWRRKRAAEKIETGENENEMIEIMSMTGVEIGSGYPTNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB83</accession>
    <name>A0A392MB83_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">glucan endo-1,3-beta-D-glucosidase</fullName>
            <ecNumber evidence="3">3.2.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0005235</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of (1-&gt;3)-beta-D-glucosidic linkages in (1-&gt;3)-beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 81 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.39" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010006759">
        <property type="protein sequence ID" value="MCH84403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052861">
        <property type="term" value="F:endo-1,3(4)-beta-glucanase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042973">
        <property type="term" value="F:glucan endo-1,3-beta-D-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005200">
        <property type="entry name" value="Endo-beta-glucanase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040720">
        <property type="entry name" value="GH81_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31983">
        <property type="entry name" value="ENDO-1,3(4)-BETA-GLUCANASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31983:SF22">
        <property type="entry name" value="GLUCAN ENDO-1,3-BETA-D-GLUCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17652">
        <property type="entry name" value="Glyco_hydro81C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52008">
        <property type="entry name" value="GH81"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycosyl hydrolase family 81 C-terminal" evidence="9">
        <location>
            <begin position="5"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH84403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19910" checksum="A2DDD0BAFAC17C15" modified="2018-12-05" version="1" fragment="single">MLVIDRGSEFFNAQLNHLGYFLYGIAVLVKLDPDWGRKYKPQAYSLMEDFMNWSTCSNPNYTRLRCFDLYKLHSWAGGLTEFADGRYQKGTSEAINAYYSSTLIGLAYGDANVVAIGSTLTAFEIKAAQMWWHVKKGGNMYDEEFIKENRMVGLAWSNKRDMELWFGYLGARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBY9</accession>
    <name>A0A392MBY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007107">
        <property type="protein sequence ID" value="MCH84615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6355" checksum="9E4A672B31030AE5" modified="2018-12-05" version="1" fragment="single">SLDNETPKPASAPLLFHEEKDDYRKRMVEVATSEEEEGMNLQFACWDRRINGWGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC23</accession>
    <name>A0A392MC23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007743">
        <property type="protein sequence ID" value="MCH84996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2046" checksum="29CAB45E09B06AA7" modified="2018-12-05" version="1" fragment="single">VLSDGRMTMLNGPCVPVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC30</accession>
    <name>A0A392MC30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methyl-CpG-binding domain-containing protein 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0005441</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007095">
        <property type="protein sequence ID" value="MCH84609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.890.10">
        <property type="entry name" value="Methyl-cpg-binding Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039622">
        <property type="entry name" value="MBD10/11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001739">
        <property type="entry name" value="Methyl_CpG_DNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33729">
        <property type="entry name" value="METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33729:SF6">
        <property type="entry name" value="METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01429">
        <property type="entry name" value="MBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="MBD" evidence="7">
        <location>
            <begin position="34"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="70"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="87"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="120"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH84609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="249" mass="27367" checksum="E5A85753D54EA033" modified="2018-12-05" version="1" fragment="single">MIFGGNYPPAHNTSHVWIDVFELINWHKHFSTLQFYPKKVGTPRKSEIIFVAPTGEEISSKKQLEKYLKAHPGNPNISEFDWGTGETPRRSTRISEKVKTTPPPSEDEPPKKRGRKSSGSKKDDKETESAAVEGKEKTSAEEPKGDPIDADNKIDDKTKNDDAEEIKQSNAEGETFQEALNAVVDEEIVETAKENGTIDSSKQEKSGGTEENEGAEKVSLNVGDTNAEAEGGLVQETLNVVVEEAIVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC36</accession>
    <name>A0A392MC36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription initiation factor TFIID subunit 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007872">
        <property type="protein sequence ID" value="MCH85080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34536:SF4">
        <property type="entry name" value="BTZ DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34536">
        <property type="entry name" value="DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="198"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="428"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="303"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="336"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="375"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="428"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="459"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="491" mass="56521" checksum="5984B15503F29599" modified="2018-12-05" version="1" fragment="single">VRSLPTRAGRDVLSDTVDGDKLYRGRDEVYIDAPHRFSRERHQDMSTRNSRLNFGRGRGRVNSRIRGDWESDREYSGEFYNGPSQQFRGARSKYSSAIADTDMEYNNVGPDDSYVVNGRLGRKPLNDGSYIAPRRRSPAGGRDGIQMGHRNPRAVSPNSRCIGGDGSELGGMRHSEKFMRGFADDTLDSLYKRPQQFEGLDGRFSRGRGRNFSSMQRRGGLSRMRSKSPIRSRSRSPGQWTSPRRRSPRRRSPEGFGGHPEMTHRRSPLYRVDRMRSPDRPVFTGERVVRRHGSPQFISRPSNDMRDIDSARDHGHPRSVNSNRSPSGRILIRNNRRFDVADPRDRADNDDEYFGGGGPMHSGRILELNNGEGNGEERRRFGERRGPMRSFRPPYNNGSNNNNNVGENFHLNAEDGPTRHYRFCSDDSDFHDRGNNLRERDFDRRIKGRNGNGPPRRTRNMDEQEDNFRHGGQVWSDDSFDDISRVKRKRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDL3</accession>
    <name>A0A392MDL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metal-dependent protein hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0005206</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MYG1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006723">
        <property type="protein sequence ID" value="MCH84374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003226">
        <property type="entry name" value="MYG1_exonuclease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11215">
        <property type="entry name" value="METAL DEPENDENT HYDROLASE - RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11215:SF1">
        <property type="entry name" value="MYG1 EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03690">
        <property type="entry name" value="MYG1_exonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="10"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH84374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17030" checksum="17B3E09A61B8833B" modified="2018-12-05" version="1">MSNSKTARVSDSSSPSSHASLKRVGTHNGSFHCDEALGCFMIRLTRKFFNAEIVRTRDPQVLEGLDAVLDVGGVYDPARDRYDHHQKGFEEVFGHGFSTKLSSAGLVYKFSSILQYEGEGNSGGHNFSSLNFGFPPMLVGFGGGEKTSSKYFTYIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEG7</accession>
    <name>A0A392MEG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Isoleucine-tRNA ligase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0006285</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008515">
        <property type="protein sequence ID" value="MCH85439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032543">
        <property type="term" value="P:mitochondrial translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009791">
        <property type="term" value="P:post-embryonic development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048608">
        <property type="term" value="P:reproductive structure development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050081">
        <property type="entry name" value="Ile-tRNA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42765:SF1">
        <property type="entry name" value="ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42765">
        <property type="entry name" value="SOLEUCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-tRNA synthetase class Ia" evidence="7">
        <location>
            <begin position="90"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH85439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14729" checksum="8ECEDA653BDAB04B" modified="2018-12-05" version="1" fragment="single">VLSRNACLSSMRTNSIGLYYSRGISSAKVVPLSKFSNYCTHSKDDVXSSKRRSRGPVMAGKKAAEGIKQDEGKYKHTVDLPKTAFGMRANSSGNFILHDGPPYANGDLHIGHALNKILKDIINRYKVSFPSFEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGE0</accession>
    <name>A0A392MGE0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010543">
        <property type="protein sequence ID" value="MCH86570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="83" mass="9472" checksum="BA58C6F1FF617655" modified="2018-12-05" version="1">MAGVGCILVLFWQRERASMGGIWFFVGSTFVVLWCLVFCPWFSAFVMLWWWVGVVIPATSFASVTLVWSRVVVVPRNYLPPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHN5</accession>
    <name>A0A392MHN5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">glutathione gamma-glutamylcysteinyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0007874</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.15" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010011349">
        <property type="protein sequence ID" value="MCH87010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016756">
        <property type="term" value="F:glutathione gamma-glutamylcysteinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098849">
        <property type="term" value="P:cellular detoxification of cadmium ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010273">
        <property type="term" value="P:detoxification of copper ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046938">
        <property type="term" value="P:phytochelatin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.30">
        <property type="entry name" value="Phytochelatin synthase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040409">
        <property type="entry name" value="PCS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007719">
        <property type="entry name" value="PCS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038156">
        <property type="entry name" value="PCS_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33447">
        <property type="entry name" value="GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33447:SF19">
        <property type="entry name" value="GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05023">
        <property type="entry name" value="Phytochelatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51443">
        <property type="entry name" value="PCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0104">Cadmium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Peptidase C83" evidence="5">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6232" checksum="DDC69CE1A71D2827" modified="2018-12-05" version="1" fragment="single">TGIGHFSPLGGYHAERDMALILDVARFKYPPHWVPVTFLWNALNTIDQETGQHRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHR2</accession>
    <name>A0A392MHR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011409">
        <property type="protein sequence ID" value="MCH87040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7933" checksum="5EBF14C4A60DE029" modified="2018-12-05" version="1" fragment="single">GRQILDGIMITNEVVDEAKTSASVLVNCSPSEEFYFDKGSRQGDPLSPFLFLIATEGLNAMMNMLQCRLCCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MI47</accession>
    <name>A0A392MI47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transportin-3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006766</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009377">
        <property type="protein sequence ID" value="MCH85914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MI47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051345">
        <property type="entry name" value="Importin_beta-like_NTR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12363:SF33">
        <property type="entry name" value="IMPORTIN-13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12363">
        <property type="entry name" value="TRANSPORTIN 3 AND IMPORTIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH85914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13932" checksum="D81310387C56D994" modified="2018-12-05" version="1" fragment="single">CRKKLCGCLDGLFHIYNRTVSGEDSFKVPAEDSLHLVEALSMVVTELPLEDAKRALEALCIPVISPLQEAINQGPESLSKRPSRQLTVHIDRFAYIFRYVKHPQVVADAIQRLWPIFKAIFDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ48</accession>
    <name>A0A392MJ48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011480">
        <property type="protein sequence ID" value="MCH87079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9750" checksum="24EB0E8C3A84A331" modified="2018-12-05" version="1">MNIKASTKESVIPYALIPYPPTISYPPTIPYPPTISSIPYPPTIPYSITSCIDYLNPLKLQSTPQVPAELFIGQTIDLNLTAQTRFEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJD8</accession>
    <name>A0A392MJD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010207">
        <property type="protein sequence ID" value="MCH86374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24299">
        <property type="entry name" value="CYTOCHROME P450 FAMILY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24299:SF59">
        <property type="entry name" value="CYTOCHROME P450 SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017364091" evidence="1">
        <location>
            <begin position="23"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="283" mass="32206" checksum="7BCF1C5C57CA8196" modified="2018-12-05" version="1">MDYTTLMLLISILWXXXXXXXXXXXXXXXKSSSSKLPPGPHPYPIIGNILELVGTNPLDAFTHLSKIYGPIITLKLGTSTTIVISSPQIAKETLHTYDIVFSSRTVPDAAKTLDHHKVSMVWMPPSSKWRTLRRACATKIFSTQQLDSTKFHRKRKVQDLINYVHKCSEKGEAFDFGEVVLATVMNSISETFISMDLFHYYGSSDDVKKSKEFKEMVHGIMEETGRPNVVDFFPFFKFLDPQGIPFWIFSKNRVPNYVVMMSYTYFHQNNYGCSIEIGPSISI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK56</accession>
    <name>A0A392MK56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Splicing factor 3A subunit 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012432">
        <property type="protein sequence ID" value="MCH87553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8972" checksum="563A58F0FC4EAFA3" modified="2018-12-05" version="1" fragment="single">HTPLEKLDKKHFAKGARGLEKNGVASAPQEGNLKEIALMEAKLNKLCDLLDETILRTKDNVVKKQALTYEEIEAERLEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKF0</accession>
    <name>A0A392MKF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ethylene-responsive transcription factor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0007594</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010855">
        <property type="protein sequence ID" value="MCH86734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009873">
        <property type="term" value="P:ethylene-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.730.10:FF:000001">
        <property type="entry name" value="Ethylene-responsive transcription factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044808">
        <property type="entry name" value="ERF_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190">
        <property type="entry name" value="DNA-BINDING DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190:SF274">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="8">
        <location>
            <begin position="62"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="31"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="133"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="144"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH86734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17337" checksum="E77D392976DBEDEF" modified="2018-12-05" version="1">MASTTKDSDFAYLEHIQQYLLFDDSSLITSTHDQSLPSPKSDNDSDTIVEAREISAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGRKAKLNFPHLIESDVLTSEPKREVVLKRESPEPSSSEGSFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLQ7</accession>
    <name>A0A392MLQ7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0008080</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011753">
        <property type="protein sequence ID" value="MCH87214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="39"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="120"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH87214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="521" mass="59561" checksum="69EF9D93CD4B200B" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLZ4</accession>
    <name>A0A392MLZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014314">
        <property type="protein sequence ID" value="MCH88520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11158" checksum="56BFDE423BF5C6D9" modified="2018-12-05" version="1">MKASGALVTTVEVDSQGFPNTNLESIASEAKIMGEDMYGDWLVVNRKKNNGRKSRPKQQGKMAGFEEHVKKFSKGSMFNACLLXNRKKNNGRKSRPKQQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM68</accession>
    <name>A0A392MM68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NYNRIN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014235">
        <property type="protein sequence ID" value="MCH88471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="117"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="337" mass="39065" checksum="8D1F7A9C5C2FE6CF" modified="2018-12-05" version="1" fragment="single">MVTKKEKCINEDFPDEKLLMISKRPWFADMANFKAGQDGVIRRCVDEEESQSIMWHCHSAPYGGHHSGPRTTAKVLQSGFFWPTLFKDCVEFVKRCDNCQRTGNVSKRNEMPLNGMLEVEPFDCWGIDFMGPFPSSRSNLHILVCVDYVTKWVEAIACQANDAHTVVKFLKNNIFTRFGVPRVLINDGGKHFCNKYLDNLLVNYNVKHKVTTPYHPQTSGQVEVSNRQLKQILEKTVSTSRKDWSMKLNDALWAYRTAFKTHLGRSPYQLVYGKACHLPVELEHKAYWAVKFLIFYADLAGEKRLLKLNELEEWRLQAYENAVIYKARTKKYHDKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM74</accession>
    <name>A0A392MM74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">WUSCHEL-related homeobox 11-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">A2U01_0009491</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9 10">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the WUS homeobox family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014479">
        <property type="protein sequence ID" value="MCH88600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048830">
        <property type="term" value="P:adventitious root development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000118">
        <property type="entry name" value="WUSCHEL-related homeobox 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001356">
        <property type="entry name" value="HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044558">
        <property type="entry name" value="WOX11-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46998">
        <property type="entry name" value="WUSCHEL-RELATED HOMEOBOX 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46998:SF2">
        <property type="entry name" value="WUSCHEL-RELATED HOMEOBOX 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00046">
        <property type="entry name" value="Homeodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00389">
        <property type="entry name" value="HOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50071">
        <property type="entry name" value="HOMEOBOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="4 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 9 10" id="KW-0371">Homeobox</keyword>
    <keyword evidence="7 9 10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Homeobox" evidence="12">
        <location>
            <begin position="22"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="Homeobox" evidence="9">
        <location>
            <begin position="24"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="8"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCH88600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="22952" checksum="D8390F1C36A75017" modified="2018-12-05" version="1" fragment="single">MEDKMQHNPPNNTPTQHGSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQKNQMLMMQQPQQVVVNDGASATASAMNNSCDMVQTNYPIMGGFGGGSSCLNDSSGSSSSSSCGGVLSGQQGMDGFFSVSSQMGFLGIDQTLTPSSLLCPPFSSNLNYHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNA1</accession>
    <name>A0A392MNA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional aspartokinase/homoserine dehydrogenase chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014641">
        <property type="protein sequence ID" value="MCH88683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004412">
        <property type="term" value="F:homoserine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009067">
        <property type="term" value="P:aspartate family amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009090">
        <property type="term" value="P:homoserine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011147">
        <property type="entry name" value="Bifunc_Aspkin/hSer_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43070:SF5">
        <property type="entry name" value="HOMOSERINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17184" checksum="9FC0E86FA023CF49" modified="2018-12-05" version="1">MSKVTDMMYDLIHKAQTQDKSYISALDAVSDKHCLTAHELFDGNDLAIFLSNLHQEVTNLKAMLHAIDIERDFLQMDGHKGSPRRKSYSCRSNGWTEQRLNKWYSHSPSKVIIATGFIASTPQNIPTTLKRDGSDFSAAIIYGCSIRGACDRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNQ1</accession>
    <name>A0A392MNQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich RLK (Receptor-like protein kinase) 8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015218">
        <property type="protein sequence ID" value="MCH88981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF511">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="36"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="193"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="292" mass="33046" checksum="71C32C14EEE83F01" modified="2018-12-05" version="1" fragment="single">MNLSTIFEPSNYEEALCNENWTNAIKTELSALMKTNTWSLVHLPANKRAIGCKWVFKLKLHVDGTVERYKARLVAKGFTQTEGLDYLDTFSLVVKMTTIKVLMAIAASQNWPLFQLDVNTTFLHGDLNEEVYMLPPPGLDLPSPDMVCKLQRSLYGLKQASRQWNTKLTDTLIQCGYTQSKADYSLFTKQSSAVKTLLNDKFSIKDLGTLKYFLGFEVARSKEGINLCQRKYTLDLLEDAGLLGSKPCTTPMQPHLQLHKTSGQPLSNPTPYRRLIGRLLYLTHSRPEIAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNT7</accession>
    <name>A0A392MNT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015680">
        <property type="protein sequence ID" value="MCH89202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16670" checksum="30A3A19D1AB9A276" modified="2018-12-05" version="1" fragment="single">DFASTLITALCKASNVVAGATDADFHPIRLLSLNYFNNKYERGPVVPRGGCGAREEAVREEEEINRFEEGVHPDQQGVPENQENPAQPPPLYTHDINFLAGMLHNMEISQYSGLPNMYYDTSSMAYSEAMSYRATFPAPSFGTLYPVDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNZ0</accession>
    <name>A0A392MNZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein FAM179B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015137">
        <property type="protein sequence ID" value="MCH88933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005881">
        <property type="term" value="C:cytoplasmic microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000226">
        <property type="term" value="P:microtubule cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024395">
        <property type="entry name" value="CLASP_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21567:SF65">
        <property type="entry name" value="ARM REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21567">
        <property type="entry name" value="CLASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12348">
        <property type="entry name" value="CLASP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CLASP N-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21396" checksum="4A455707C7C0B456" modified="2018-12-05" version="1" fragment="single">DKILLVVVKSMKNPRSALCKTSIMAASDIFNAFGDKLFDPSTSEAFDGLLLQLLLKASQDKKFVCEEAEKALGSMVGSMTPLPLLQKLRISVSHTNLRIRAKAXVSLSKCVSKMQGIEEMEEFGMGKLIEVAADLVNDRLPEAREAARSIATSVYEAIIKDVEEVEEKMEVWQSFCHSKLTPINALSILKIVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP58</accession>
    <name>A0A392MP58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NLP7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009640</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014763">
        <property type="protein sequence ID" value="MCH88749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MP58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045012">
        <property type="entry name" value="NLP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055081">
        <property type="entry name" value="NLP1-9_GAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002:SF35">
        <property type="entry name" value="PROTEIN NLP6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002">
        <property type="entry name" value="PROTEIN NLP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22922">
        <property type="entry name" value="GAF_NLP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NLP1-9 GAF" evidence="1">
        <location>
            <begin position="146"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="280" mass="31858" checksum="5CA14B4736EBB346" modified="2018-12-05" version="1" fragment="single">MPESEEENQDFPPKTKTSLEEHVCAMDFDLDLETSWPLDHMSFISNPMSPFLFSTISDQPSSPLWTFTDGEDENHAKLAASAFSDCHKIFSCDSNSITEKPVEKDENKTLLPPLLPPIENLDRYCGIKEKMTQALRYFKEWTEMNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLNQYRTVSLMYKFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLPSCIGVLELIMTSPKINYAPEVEKICKALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPB5</accession>
    <name>A0A392MPB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0009702</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SFH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014900">
        <property type="protein sequence ID" value="MCH88809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00170">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.525.10">
        <property type="entry name" value="CRAL-TRIO lipid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001251">
        <property type="entry name" value="CRAL-TRIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036865">
        <property type="entry name" value="CRAL-TRIO_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051026">
        <property type="entry name" value="PI/PC_transfer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45657:SF17">
        <property type="entry name" value="CELLULAR RETINALDEHYDE BINDING_ALPHA-TOCOPHEROL TRANSPORT, CRAL_TRIO-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45657">
        <property type="entry name" value="CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00650">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52087">
        <property type="entry name" value="CRAL/TRIO domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50191">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="CRAL-TRIO" evidence="7">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="147"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH88809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22194" checksum="A87EB8A5319968D8" modified="2018-12-05" version="1" fragment="single">GFKNFTKSARELIIQMQKIDSDYYPETLCQMFIINAGPGFKLLWNTVKTFIDPKTTSKIHVLGNKFQSKLLEIIDASELPEFLGGSCTCVDHGGCLRSDKGPWQDPNILKMVLSGKVQCSKQIVTVSNDKGRVIECDKTSIPTILSGYTSTGESGSEAEDITSPKACGNSMNPVLTPVREEASDRTLNMRLQQNINAATNNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPV9</accession>
    <name>A0A392MPV9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010008</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015490">
        <property type="protein sequence ID" value="MCH89115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="367"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="492" mass="55658" checksum="CE344693151F5BB0" modified="2018-12-05" version="1" fragment="single">QLLEQHQLFAKLSKCEFAVPRIAYLGHIISHLGVAADPEKLLAIESWPVPHNITSLRGFLGLTGFYRRFVRHYAALAEPLTALLKKNAFDWNDAAAHAFQQLKAAMTTLPVLGIPNFSQPFDVTTDASSLAVGAVLSQNAHPIAFFSRKLCSRMRMASXYEREMFAITAAVKKWRHYLLGRHFRIYTDHRSLKELLTQTIQTPAQHKWLTKLLGFDYEIVYTPGSTNVVADALSRVPDPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSLQQGILFYKGRLFIPAETKLRAQLLHEFHGSPVGGHSGVKGTLVRLAAAFSWPHMAKDVKTWVQECVTCQQHKYSTHRPYGLLNPLPIPLQVWDDIAMDFITKXXXXXXXXXIWVVIDRLTKYAHFVALPSHFSAASLAPIFMTEIYRLHGMPKTIVSDRDRVFVSRFWQELFKATGTTLCFSSAYHPQSDGQTEVTNRILQTFLRCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQH3</accession>
    <name>A0A392MQH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein NLP7-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0009424</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014335">
        <property type="protein sequence ID" value="MCH88534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045012">
        <property type="entry name" value="NLP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055081">
        <property type="entry name" value="NLP1-9_GAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002:SF35">
        <property type="entry name" value="PROTEIN NLP6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002">
        <property type="entry name" value="PROTEIN NLP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22922">
        <property type="entry name" value="GAF_NLP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="NLP1-9 GAF" evidence="2">
        <location>
            <begin position="17"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="NLP1-9 GAF" evidence="2">
        <location>
            <begin position="166"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH88534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="357" mass="40017" checksum="5A6A1932EA41119B" modified="2018-12-05" version="1" fragment="single">MTQALRYFKELTEMNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLNQYRTVSLMYKFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLPSCIGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVASYIIDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCSNIAQFCKTDYPLVHYALMFGLTGCFAICLRSFYTGDDDYVLEFFLPPGITEFHEQKTLLGSILATMKEHFQSLKIAAGVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRE0</accession>
    <name>A0A392MRE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017664">
        <property type="protein sequence ID" value="MCH90136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6832" checksum="545775338F61DAF6" modified="2018-12-05" version="1" fragment="single">MKEESSSSRQLASGSGSRSAQEELNEWHDAWNENDKDFENQGTSKHDSFWSKLKSEAAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRY6</accession>
    <name>A0A392MRY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010706</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016936">
        <property type="protein sequence ID" value="MCH89805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MRY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="234"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="352" mass="40585" checksum="D5DB8993BD2B6517" modified="2018-12-05" version="1" fragment="single">VYCDASHQGLGCVLMQHKRAVAYASRQLKVHEKNYSTHDLELAAVVFALKIWRHYLYGCTFVVFSDHKSLKYLFDQKELNMRQRKWMETLKDFDFTLQYHPGKANVVADALSRKSISACSAQMASQQELLREFRDLHLEVEFALGNMKLIRETNRDFKVGPDNILRCNGRVCVPDAMNLRDTILGEAHKSKLSIHPGATKMYQDLRLDFWWPGMKRDVAEYVASCLTCQKAKIEHQRPAGMLQSLDIPEWKWDSISMDFITGLPKTRRKHDFIWVIVDRLTKSAHFLSVRTTDTAAKLTDVYIAEIVRLHGIPSSIVSDRDPKFTSHFWKTLHEALGTKLRLSSAYHPQTDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS19</accession>
    <name>A0A392MS19_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alpha-1,4 glucan phosphorylase</fullName>
            <ecNumber evidence="2">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011224</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010018053">
        <property type="protein sequence ID" value="MCH90310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005980">
        <property type="term" value="P:glycogen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000807">
        <property type="entry name" value="Alpha-glucan phosphorylase 2, cytosolic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11468:SF28">
        <property type="entry name" value="ALPHA-GLUCAN PHOSPHORYLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11468">
        <property type="entry name" value="GLYCOGEN PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="31119" checksum="071E7019D3B95DDD" modified="2018-12-05" version="1" fragment="single">MGNPWEIIRNDVSYPIRFYGKVVSGSDGKKHWVGGEDIKAVAHDVPIPGYKTKSTINLRLWSTKAASEDFDLYAFNSGRHTEASEALANAEKICYILYPGDESIEGKTLRLKQQYTLCSASLQDIIARFERRSGASLNWEEFPEKVAVQMNDTHPTLCIPELMRILIDIKGLSWKDAWNITQRTVAYTNHTVLPEALEKWSLDLXEKLLPRHVEIIELIDEELVRTIVAEYGTADSDLLEKKLKEMRILENVELPAEFADILVKSKEAVDISSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS28</accession>
    <name>A0A392MS28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010747</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017034">
        <property type="protein sequence ID" value="MCH89845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="141"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="297" mass="32438" checksum="1F92FE96FB4416CB" modified="2018-12-05" version="1" fragment="single">STPTKGATAAEVEDPEVPHPKKKRATRGRQALLTGGSSRGQKGSAGEVASEEAEASKESPTKASPPPEKKGKSVLEPLSFWDKGFDPLAFIEEQFQRYGSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQNKVELADKELGDIEMKLTEAKVKWEGELKDVKANYEGQLDKAKGEMEKEKKKLTDEVARLQGELTTKGEQLASLAKEKDEALTRYKKLNEEKVAFEGLVEDLQTAIGEQYEAGFQFAVAQARVVLSESEVSKLGELDALNRIVDGKLLPPSPPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSF1</accession>
    <name>A0A392MSF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinesin-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011412</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018444">
        <property type="protein sequence ID" value="MCH90496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calponin-homology (CH)" evidence="1">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="25681" checksum="9C21B21010C4A8ED" modified="2018-12-05" version="1" fragment="single">SKQPSEEQFCLALRNGLILCNVLNKINPGAILKVVDNQVLAVHSPEGPAHSAIQYFENMKNFLDAVKDMTLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSFPKGTPSSSILGSESADESLDESQSSQYKQLLEFLRMSQEVSIEETRTASALAFLFDHFGLKLLQAFVREIDDGIEDLPLNAMVXKIFSVVIDTFLSKIVRDFSTLLVSQGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSU2</accession>
    <name>A0A392MSU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0011517</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018670">
        <property type="protein sequence ID" value="MCH90600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000090">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein, chloroplastic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF527">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="67"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="193"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="228"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH90600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="390" mass="43270" checksum="ECC55AB82AD79C20" modified="2018-12-05" version="1" fragment="single">DAFGCTSVLNSCGSLLALEKGRQVHGYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFDLMAAINLVSYNAMIEGYSRQDKLCEALDLFREMRLSLFPPTLLTXXXXXXXXXXXXXLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVADARLVFEEIQDKDIVVWNAMFSGIKEAHKAFSYTNRKDIACWNSMIATYAQHGEAAKAIQVFEHVIMEGVKPNYVTFVGVLSACSHAGLLDLGFYHFDSMSQFGIEPGIEHYACMVSLLCRAGRVYEAKEFIEKMPIEPAAVVWRSLLSACRVSGDVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWANVRRLREKMDISGVVKEPGCSWIEVNNEINKFIARDTAHRDST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTY9</accession>
    <name>A0A392MTY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011345</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018291">
        <property type="protein sequence ID" value="MCH90429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8945" checksum="29536C3477E0FAF5" modified="2018-12-05" version="1">MLWTTSHEPKMEVNYLHXLWTTPHEPKMEELLSDLPNKAVVRFHTVVAGFAEEKLDSLLPSVFSDSFLWLLATNQHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV27</accession>
    <name>A0A392MV27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018532">
        <property type="protein sequence ID" value="MCH90538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF70">
        <property type="entry name" value="NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="340" mass="38966" checksum="B92FAD95D27DE178" modified="2018-12-05" version="1">MLLLHKRLCIICIRKKGKKGCLLFKIDFEKAYDRVDWQFLKLTLEEFGFPVIISNLIMCCITSSSLALKWNGEKLDNFAPKRGLRQGDPLSPYLFILCMEKLSLLIQDKVDTRQWFPVKISRNGPPFSHLLFADDCLLFTEAKASQVRLVQNVINNFCRASGLKVNIQKSRFFPSHNVPRSKVIKFESIVEFHHTNNLGKYLGFPMLTGRVRISDFNYILDKINGRLAGWKSNLLSRAGCVTLARSVITAMPIYSMQNLWLPSSVCNNVDSIIRNFVWGRNSCHWVGWSTLIKPRLKGGLGIRTTRKANTAMLGKHVWDILNSPQKLWVQMCKTLNSTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWI7</accession>
    <name>A0A392MWI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019616">
        <property type="protein sequence ID" value="MCH91068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33984:SF11">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33984">
        <property type="entry name" value="OS02G0717600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="13920" checksum="D29BFB4F8C6A81FB" modified="2018-12-05" version="1" fragment="single">MVNALTKTKLQDGYVSYPWERTMQEMLPVPNSSNFLSILLLPKASDRVASRYNDLEDTLARANAWINAGQASGVPIVFMNIQTESLLTKISGETASSTVNTGSLSDLSNLSNASLYGFEDYHGIDIGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX05</accession>
    <name>A0A392MX05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012762</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021260">
        <property type="protein sequence ID" value="MCH91832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MX05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="194"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="225"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="316" mass="33764" checksum="40635E6AB41B2CA3" modified="2018-12-05" version="1" fragment="single">QQTATTSKTRSTRSKAKVGTSAIIADVVPISTVHASESRKDSKSKSAVKKEKSTKVSELSPSMSIKSSKKSSKKKSESTVRKPLSMIDLYLSKNPFQTSGVESNVDTSVKDSKTTDVEASEKVVIDTKISESEKSNPAVTLIPENPKSDEKLGQSVLNVADATTETAYKDDVASSAADMSRTNDIVGFVLNSLKETVPKTNVEPDVGTSLAPPGSSDEESGYESAVEKDKSEEKTATKEGELSGNAMNSQESEKTVSGDDVENPQSVESDKTVPLDEEVNVSEKTVDYNREVVNVDDLDSTEQPLSKTIGGSIAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXH7</accession>
    <name>A0A392MXH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Auxilin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013174</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022240">
        <property type="protein sequence ID" value="MCH92237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="21052" checksum="424234529E114D0A" modified="2018-12-05" version="1">MEEDESSLLGVLRESIAIFSILMDLKIKFSMNTRHKANFGCLQATHARDFLLAIIIDGLGQHMSRVEYRTILKYRLMIPLFPIDEVFPVCRKACLDNFEEHAVHCRELPGFKYKHNFVRDVLFDIFRHAGVYVQKEASVNFLTNPHEGRLTLRLVDVMVYGWIDSKTCMCGLDCDFATCGIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYN8</accession>
    <name>A0A392MYN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023117">
        <property type="protein sequence ID" value="MCH92640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14616" checksum="4120898DA200B269" modified="2018-12-05" version="1">MSEPNSSSHSPLTPTEEQPPQRRRSQRLMQRQKEQGARNTIVSPRKSPMIVSDDGNAAALTSGNKRKKKEPVNSTGNPILDMMSTFLQILLTDTKYTRYRKCVIGVVGFFTVLYYIPPFINNIKQLFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZF6</accession>
    <name>A0A392MZF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013282</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022489">
        <property type="protein sequence ID" value="MCH92345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13069" checksum="238277947295D15A" modified="2018-12-05" version="1">MGRMTFPTLWRKWIKECVCMATTSVLVNGLTRVNGGLVEHNLFMGYSVGELALVSVSHLQFADDTLLIWAKSWANVCALRVVLVLFETMSGLKVNFNKSILVGVNIFASWLGEATFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0G1</accession>
    <name>A0A392N0G1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024578">
        <property type="protein sequence ID" value="MCH93286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="19480" checksum="AB1F37F2F8CCA9D3" modified="2018-12-05" version="1" fragment="single">NSLLSCHQMGGLCPTLAMCTCXXSYVRRGGNFGAMVNDIPNRTIAEIIEKIQKDHNIAVARGEPTPWVVIRQLVEIVEVPPLGDVEMMLYGAGQAQVGVVAAAIGVPPAAVLENGAAVLENGVVPPAAILENGVVPPAVLENGVVPPAVNGVLAANAVPPAVLPVPVGGGGAVHNHPAEQDLEDIQHMFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0I5</accession>
    <name>A0A392N0I5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATP-dependent DNA helicase PIF1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0014051</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024178">
        <property type="protein sequence ID" value="MCH93103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="6">
        <location>
            <begin position="127"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH93103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="223" mass="26263" checksum="F4EAD5442CA7584E" modified="2018-12-05" version="1">MVETVGDVLQKPARDYFLTVHVRGEVEGEIERSFYEDHRTELGQFWRLFDSKGLQLCVEFNNDDDVPRITTGWMTLRRHYNFQGHHPILFKYLGNNQFQIIAKEDPITPXXFPTWHTKSRALRKAVTFEITMTEDPEIVAFLTLPKKMGEYLWNTMLDEITIIGTIREKHKCELEYRKDPFVVTISKGWREVVGINGFKVGDRLLFNTSSIYDDHTFYVRSLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5S7</accession>
    <name>A0A392N5S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Plant intracellular ras-group-related LRR protein 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015296</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the SHOC2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027081">
        <property type="protein sequence ID" value="MCH94338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000746">
        <property type="entry name" value="Plant intracellular Ras-group-related LRR protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003591">
        <property type="entry name" value="Leu-rich_rpt_typical-subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050216">
        <property type="entry name" value="LRR_domain-containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48051">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48051:SF54">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00364">
        <property type="entry name" value="LRR_BAC"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00369">
        <property type="entry name" value="LRR_TYP"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="25087" checksum="58ED54224D71546D" modified="2018-12-05" version="1">MIRSLVELDVSFNDLSYLPTNIGYELPNLKKLLIHLNKIRSLPLSICELKSLRYLDAHFNELHGLPNAIGRLTNLEILNLSSNFADLKELPETFGELTNLRELDLSNNQINALPDTFGCLDNLTKLNLEQNPLELPPMEIVNQGVQAIKTFMVKRWIDMLQEEERKHNEEMQEQVEGGWLTRSTSWLKNATGNVIGYIGTTVGSPMSPKSPRDAAYLNQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N741</accession>
    <name>A0A392N741_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0016586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030229">
        <property type="protein sequence ID" value="MCH95606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N741"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="66"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10001" checksum="DA5A92BC22CF4CC6" modified="2018-12-05" version="1">MEKSKKTAVVAASSANVDPVQEKAQGAFTLVMIKNSNDPTVSKDLVENENQYVENFISKLNAGDYNSNTEESGSSSDESDSNSDDSDSNSDDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N818</accession>
    <name>A0A392N818_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016909</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031091">
        <property type="protein sequence ID" value="MCH95926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N818"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6827" checksum="A1D36E5ED8ACEFAB" modified="2018-12-05" version="1" fragment="single">IVKFCCLSRKHHVYEFEVAAFKQILKVYYASTGMAYGKAILLGGGETGCCWYQGSEEDPDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8Z2</accession>
    <name>A0A392N8Z2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016456</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029925">
        <property type="protein sequence ID" value="MCH95478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6329" checksum="C8DBC6CE68D3E238" modified="2018-12-05" version="1" fragment="single">PNKDHFMHVMSTSSSSNKFIITTMVNPLRFYDKKEEDIGGSEIVADTSSKSVATDSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAQ8</accession>
    <name>A0A392NAQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030116">
        <property type="protein sequence ID" value="MCH95554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6980" checksum="1AD84B59E0245782" modified="2018-12-05" version="1">MMEVPETEKHVLACAKQTQQQRAIGYRGTSIGDGNFVSSRETMEEENNDRIKFLIEAARYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAY9</accession>
    <name>A0A392NAY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative cation-transporting ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0018000</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033855">
        <property type="protein sequence ID" value="MCH97007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015662">
        <property type="term" value="F:P-type ion transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006874">
        <property type="term" value="P:intracellular calcium ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006544">
        <property type="entry name" value="P-type_TPase_V"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45630">
        <property type="entry name" value="CATION-TRANSPORTING ATPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45630:SF7">
        <property type="entry name" value="ENDOPLASMIC RETICULUM TRANSMEMBRANE HELIX TRANSLOCASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="152"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="263"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="40"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH97007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="349" mass="38802" checksum="3043FBEA2AB3616F" modified="2018-12-05" version="1" fragment="single">SKPALETSGKTIIPHGEGTSRARVASQLDSASIQRARVASQSDSTSNSSGNRHLTAAENQRQRLQRMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLSTAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVLLSLLGQFTVHLFFLISSVKAAEKYMPEECIEPDAGFHPNLVNTVSYMVSMMIQVATFAVNYMGHPFNQSISENRPFMYALVAAVGFFTVITSDIFRDLNDWLKLVPLPVGLRNNLLIWAFQMFFVCYSWERLLRWAFPGKVPAWKRRQQVAVSTLEKKKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCM0</accession>
    <name>A0A392NCM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Two-component response regulator ARR12-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033414">
        <property type="protein sequence ID" value="MCH96845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="15709" checksum="92F4D99689DB15FB" modified="2018-12-05" version="1" fragment="single">ADVHSQGLVFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSINSLAPVNGAVVPRGQTTSNSTLHRNLDTKFCDPIQMKHAGFADLTECSSSRQPRVNIVSQQKFSNNLGSLEYLASSMMEQEQDKMKLLGGDFICDSYSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDI4</accession>
    <name>A0A392NDI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein kinase MRCK beta-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034850">
        <property type="protein sequence ID" value="MCH97393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044588">
        <property type="entry name" value="EREX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46856">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46856:SF1">
        <property type="entry name" value="PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="75"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18914" checksum="233832653BD6BFE7" modified="2018-12-05" version="1" fragment="single">KKELNESIKEKCEAEKLLLHEREKREQAETAWRKQLEKCGVLFKQLQECNLNLPYEDDDRTFLHPSSLNDAFNQLKTSDDQIDILLAEVENLEEDYRSAASDVDKTNNDIKDGVICGDEVRKIIADLFIDNVRLRKQTNRVARHALKLGSTASVDSPSNENVTNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEA8</accession>
    <name>A0A392NEA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transmembrane emp24 domain-containing protein p24delta9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0019061</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the EMP24/GP25L family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036615">
        <property type="protein sequence ID" value="MCH98062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015720">
        <property type="entry name" value="Emp24-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009038">
        <property type="entry name" value="GOLD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22811">
        <property type="entry name" value="TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01105">
        <property type="entry name" value="EMP24_GP25L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50866">
        <property type="entry name" value="GOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="GOLD" evidence="8">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH98062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12740" checksum="5E5B831948257264" modified="2018-12-05" version="1">MLFSSSTESLRFELQSGHTKCISEDIKSNSMTVTSSHGNNYHYGDRVQSGQFAFVAAEAGDYMTCFWAVDNKPEVTLTIDLEWKTGVAAKDWSNVAKKGQVDVSIQISISNMIYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIE5</accession>
    <name>A0A392NIE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020232</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039714">
        <property type="protein sequence ID" value="MCH99221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17972" checksum="FDCF08429A2A6656" modified="2018-12-05" version="1">MRQYCRITDETLSSTQPQKEQHHEPVEDTDCDARSDDYISDEEKKAEKPLSQETIMRFERPKPDGEFITVQLDNNPTKVVKIGANLPPLIQESLVRCLKANADVFATSPEKMLGIDPEVACHRLNVNPNMKFIAQRRRRQSPEKAEAARTIVEGLVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIJ7</accession>
    <name>A0A392NIJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Putative cadmium/zinc-transporting ATPase HMA1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0020204</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039639">
        <property type="protein sequence ID" value="MCH99193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051949">
        <property type="entry name" value="Cation_Transport_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43079:SF1">
        <property type="entry name" value="CADMIUM_ZINC-TRANSPORTING ATPASE HMA1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43079">
        <property type="entry name" value="PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH99193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14081" checksum="626A21A7ED69870E" modified="2018-12-05" version="1" fragment="single">MGLSFIYGCHSYLNLQGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHDIRNRESIISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNX6</accession>
    <name>A0A392NNX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0024725</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044321">
        <property type="protein sequence ID" value="MCI00819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010052960">
        <property type="protein sequence ID" value="MCI03685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016071">
        <property type="term" value="P:mRNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028322">
        <property type="entry name" value="PNRC-like_rgn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33670:SF15">
        <property type="entry name" value="OS02G0797600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33670">
        <property type="entry name" value="SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15365">
        <property type="entry name" value="PNRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI03685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21164" checksum="4206717E2B949EA9" modified="2018-12-05" version="1">MGTAILRSHDCLQGRFLPNDALSIPSSQIRSRKNSNPNCKSYVNNNHNQNRRRKRSPVANVNHNDRRQSVDRTAAPVNLVMGQVKILKRGEKLSPEKFNVVEEDRKVKAIGLDMDLDRPDLLLGSTDRFGPDPITMQKQIRVSDSVLKDGIYAGSAFVASPPPSSVPVPGFLGKNGVATSDLRRLLRLDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPI4</accession>
    <name>A0A392NPI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046915">
        <property type="protein sequence ID" value="MCI01723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16083:SF25">
        <property type="entry name" value="C-JID DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16083">
        <property type="entry name" value="LEUCINE RICH REPEAT CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17657" checksum="96AD6B3D305E1A89" modified="2018-12-05" version="1" fragment="single">RLEMLKILNLSHSHDLTQTPDFSNLPNLEKLVLADCKMLSEISNSIGDLKKILLISLEDCISLRSLPRSIYKLKSLKTLNISGCSMIDRLEDDLEQMDSLTNLIANNTAITRVPFSIMYHTVVPTSYHRFPCTFQVFEVFGWSAAQNFNFLGMQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSA7</accession>
    <name>A0A392NSA7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Secreted peptide</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049990">
        <property type="protein sequence ID" value="MCI02721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017356629" description="Secreted peptide" evidence="1">
        <location>
            <begin position="20"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="71" mass="7856" checksum="44DCEC4328CA9602" modified="2018-12-05" version="1">MLMMLLVILLAATTPEAAGGTDTDLCGIWYYQCYYINIALSCRCSKTIALIISRIPSTSPLPVFIRIPLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT93</accession>
    <name>A0A392NT93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0023348</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048746">
        <property type="protein sequence ID" value="MCI02316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8719" checksum="CB2E832FA4F482AB" modified="2018-12-05" version="1" fragment="single">NMKWNPNGRGKCMLDIFIPEHCLHYLIDRWQSREYLVLNCSAAKTIPDDATCINTCSAANICSELSSLWNQMLLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUA8</accession>
    <name>A0A392NUA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0024028</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050874">
        <property type="protein sequence ID" value="MCI02994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="74"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI02994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="23166" checksum="FB4C030CE8D1143A" modified="2018-12-05" version="1" fragment="single">MKDWPVPKNVKGVRGFLGLTGYYRKFIKDYGKVAKPLTELTKKDNFSWGQEAAAAFEKLKIIMSTSPVLILPNFAVPFEVECDAAGRGLGAVLMQNRQPVAFFSKALSEGNLAKSVYEKELMALVLSIQHWRHYLLGRQFVVYTDHKSLKYFLQQRVSSPDQQCWLAKLLGYQFEVKYKPGLENKAADALSRCHGEMNALVSSPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXE6</accession>
    <name>A0A392NXE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mediator of DNA damage checkpoint protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053519">
        <property type="protein sequence ID" value="MCI03869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14559" checksum="1C54567300044FE6" modified="2018-12-05" version="1" fragment="single">GFSSIAQVDTKGRARRLPVKADIRKALCFPGGSTLMILHLRKELLDDNSNSGKCLPSQPHQNSFTPAIVENEGPESSGELLINLKTSRRTGTNQSKPKALVKVGSSRGHGKLSGFDSQNPKNCCNDTVASARANDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXS0</accession>
    <name>A0A392NXS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055838">
        <property type="protein sequence ID" value="MCI04577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6536" checksum="B164DC23732A935C" modified="2018-12-05" version="1" fragment="single">MLLLPSCSAAATMLENFWVASVPGAARRGVGATRRQSFRKLVLVLAYAQRAALDGATRGIAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXZ2</accession>
    <name>A0A392NXZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat protein 7B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056111">
        <property type="protein sequence ID" value="MCI04658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043376">
        <property type="entry name" value="NPG1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44102">
        <property type="entry name" value="PROTEIN NPG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44102:SF4">
        <property type="entry name" value="PROTEIN NPGR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13663" checksum="0E9DF21B5A05E3B0" modified="2018-12-05" version="1" fragment="single">AAKECRIIVDTIESALPNGMPDGIGEDCKLQEWFHRALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEPRRLACLQKDLATTLLYGGVEVNLPSHLQVNGPTTPMSNIEEAILLLLILSGKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1G3</accession>
    <name>A0A392P1G3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025682</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056049">
        <property type="protein sequence ID" value="MCI04635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="218" mass="24786" checksum="FDFCF852544B15BF" modified="2018-12-05" version="1" fragment="single">MDKDPREAKALVDRMAENHEQWNDEPFEQLTPHKVRSGKQLKDPKPNSPRTRKKVSNKDVPEPPQDEPIIISREEFSERRDDNDPSPKENENVVTPPSSYKPPVPFPQRLAKAKVEEQIKNYVKMTETLNLSVPLFEAIREMPHYAKFLKDVISNKKQFLENETVALSEECSALLLNKMPPKLKDPGSFSIPVEIGPMLFKNALCDLGASVSLMPTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PB70</accession>
    <name>A0A392PB70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative peptide transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0029779</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069967">
        <property type="protein sequence ID" value="MCI08700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PB70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI08700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="22975" checksum="829A650214601398" modified="2018-12-05" version="1" fragment="single">IGAGCVRPCSIAFGADQLAIKENSDNGRILDSYFNWYYTSIGASTIIALSVIAYIQENLGWKIGFGVPAVLMLISAFSFVIGSPFYVKVKPSESLFTNFVRVVVVATKNRKLSLPDHNFNLYCRGHDSEMMVPTDSLRFLNKACVIRNHETDLNPDGSISKPWNLCTIGQVESLKSLLRVLPMWSTGIFMMATQSSFSTLQAKTMNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE00</accession>
    <name>A0A392PE00_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Expansin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0031426</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Secreted</location>
            <location evidence="4">Cell wall</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the expansin family. Expansin A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075830">
        <property type="protein sequence ID" value="MCI10333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009664">
        <property type="term" value="P:plant-type cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22274">
        <property type="entry name" value="DPBB_EXPA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="entry name" value="RlpA-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007118">
        <property type="entry name" value="Expan_Lol_pI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002963">
        <property type="entry name" value="Expansin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007112">
        <property type="entry name" value="Expansin/allergen_DPBB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009009">
        <property type="entry name" value="RlpA-like_DPBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31867">
        <property type="entry name" value="EXPANSIN-A15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03330">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01226">
        <property type="entry name" value="EXPANSIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01225">
        <property type="entry name" value="EXPANSNFAMLY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00837">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="Barwin-like endoglucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50842">
        <property type="entry name" value="EXPANSIN_EG45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0134">Cell wall</keyword>
    <keyword evidence="3 4" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0964">Secreted</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Expansin-like EG45" evidence="5">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU365023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI10333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11475" checksum="BF0E09C328D80482" modified="2018-12-05" version="1" fragment="single">GACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVICDYRIDPKWCLRSRSVTITATNFCPPNNHGGWCDPPNHHFDMSMPSFLRIARQGNEGIVPVLYRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGK7</accession>
    <name>A0A392PGK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrator complex subunit 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0031862</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077534">
        <property type="protein sequence ID" value="MCI10767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032039">
        <property type="term" value="C:integrator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034472">
        <property type="term" value="P:snRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027074">
        <property type="entry name" value="Integrator_9su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46094">
        <property type="entry name" value="INTEGRATOR COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46094:SF1">
        <property type="entry name" value="INTEGRATOR COMPLEX SUBUNIT 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="19913" checksum="4AF53EEB5BA24B92" modified="2018-12-05" version="1" fragment="single">MMENLVSMHVEFKQFYGPEESIFPPWLRQEELEILPSVLKEILLGKDGVESGGWMPLYSAADVKDCILKINTVNYAQEVCYNGTLVIKAFSSGIEIGSCNWILNGPKGDIAYLSSSCFFSAHAMSFDYRSLQGTSSLIYSDFASLTDAQDIEDGDNKSDPTSCAIECVKGGGSVLIPINRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392US25</accession>
    <name>A0A392US25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960028">
        <property type="protein sequence ID" value="MCI78834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392US25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8408" checksum="16890FC6C641119E" modified="2018-12-05" version="1" fragment="single">RFLRADSCSADKDRLDFARVLVATSDLEIVNKVETVLVDGIMVEVKIVEEWGYALGEDTCLFEDESTSEASQYDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT05</accession>
    <name>A0A392UT05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100429</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010967436">
        <property type="protein sequence ID" value="MCI79158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8292" checksum="5736A3091BFBC109" modified="2018-12-05" version="1" fragment="single">VLLAHNPILHTRTKHMEIDLFFVREKVAAKQLTIVHIPGTDQCADILTKPVSTAKFLLMRDKLNVHLNQPHCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTL6</accession>
    <name>A0A392UTL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010948571">
        <property type="protein sequence ID" value="MCI78339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7957" checksum="41B56FEBAD891DD9" modified="2018-12-05" version="1" fragment="single">MDSPTTVLDSPQVKAIKHLKRMLRYDIDELLDQVNDFTIFAEDLRDSSWRLTNKELRFMEAVMHFQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTU6</accession>
    <name>A0A392UTU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010950512">
        <property type="protein sequence ID" value="MCI78419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7526" checksum="74B178500EB84A1F" modified="2018-12-05" version="1" fragment="single">VDAVSQWGTPESVPEIRSFLGLAGYYRRFIEGFSKLALPLTQLTRKDQAFVWDENCEKSFQELKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV18</accession>
    <name>A0A392UV18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010957595">
        <property type="protein sequence ID" value="MCI78731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3690" checksum="E92539AD4E0C5F91" modified="2018-12-05" version="1" fragment="single">MIKWCEGNWFGSVIGTVHEDGGARRSHEQSWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVH0</accession>
    <name>A0A392UVH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960965">
        <property type="protein sequence ID" value="MCI78881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6447" checksum="D80DE5E8AD8DAF1B" modified="2018-12-05" version="1" fragment="single">MKEISFLGHVISSEGIAVDPAKVDAVLQWSTPESVTEIRSFLGLAGYYRRFIEGFSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVJ7</accession>
    <name>A0A392UVJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010958371">
        <property type="protein sequence ID" value="MCI78755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4099" checksum="57801C4B2AA47170" modified="2018-12-05" version="1" fragment="single">VSCSQSFPGEGSSSEVLGIDPFMYLAQDVIDLILFDAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWA7</accession>
    <name>A0A392UWA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0100266</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010963643">
        <property type="protein sequence ID" value="MCI78995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3495" checksum="CEEC00054DB75F73" modified="2018-12-05" version="1" fragment="single">MGSTSVSEFCQRQRSEEDGFEANKKCKGLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXE5</accession>
    <name>A0A392LXE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="24">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="24" type="ORF">A2U01_0000359</name>
    </gene>
    <organism evidence="24 25">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="24 25" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">cv. 10/8</strain>
            <tissue evidence="24">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="24">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000221">
        <property type="protein sequence ID" value="MCH79606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000115">
        <property type="entry name" value="Polyprotein of retroviral origin, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000219">
        <property type="entry name" value="Putative retroelement"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="18" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="15" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="13" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="25" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="12" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="17" id="KW-0862">Zinc</keyword>
    <keyword evidence="17" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="21">
        <location>
            <begin position="327"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="22">
        <location>
            <begin position="624"/>
            <end position="803"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="23">
        <location>
            <begin position="1117"/>
            <end position="1281"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="20">
        <location>
            <begin position="1424"/>
            <end position="1472"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="237"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="1485"/>
            <end position="1504"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="18">
        <location>
            <begin position="1295"/>
            <end position="1329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="19">
        <location>
            <begin position="279"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="19">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="19">
        <location>
            <begin position="1490"/>
            <end position="1504"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="23">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="EMBL" id="MCH79606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1523" mass="173513" checksum="A7C0904C6A58AE5F" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXQ1</accession>
    <name>A0A392LXQ1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000496</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000329">
        <property type="protein sequence ID" value="MCH79740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF3">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="21057" checksum="CC71364EDCF790E2" modified="2018-12-05" version="1">MRKEICGIRQKSGETLHEYWERFKRLCARCPHHQISDQLLIQYFYEGLLPMGRSIVDAASGGALVDKTPDAARNLIENMAANAQQFGTRMEGQSKVVNEVHTSLADQQRVENRNMIHSPTLTTLVGEIIRISNMAMFQNHSSKLLDRHPNNNRDLLFNNNIKYNNQQPRICNKFGRFGETIGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY23</accession>
    <name>A0A392LY23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="16">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">A2U01_0000620</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000434">
        <property type="protein sequence ID" value="MCH79861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14066">
        <property type="entry name" value="STKc_IRAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000044">
        <property type="entry name" value="Putative LRR receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052059">
        <property type="entry name" value="CR_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47973">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13 16" id="KW-0675">Receptor</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="32"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCH79861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="375" mass="41602" checksum="C467B07D7A926C53" modified="2018-12-05" version="1">MILRSPTLKPCRVPVKIAESHFVVKIAFFGVGSQLHRAGCVRLGFLSSSRGTLNDGRFVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLLLNWSTRYDVCMGVARGLTYLHEESRIRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCINDLIDSRLSEFNMEEVQRLVKIGLLCTQTSPNLRPSMSRVVAMLSGDIEVSAVTSRPGYLTDWKFDDVSSIMTDISTRGLDTSYYNSSASPSTVGGAYIHSPIDPSKSILQETVRDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYS5</accession>
    <name>A0A392LYS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">A2U01_0000892</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000717">
        <property type="protein sequence ID" value="MCH80130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.10:FF:000032">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 297-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13975">
        <property type="entry name" value="gag-asp_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="10" id="KW-0229">DNA integration</keyword>
    <keyword evidence="14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="12" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="17">
        <location>
            <begin position="281"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase catalytic" evidence="18">
        <location>
            <begin position="793"/>
            <end position="957"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1182"/>
            <end position="1220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCH80130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="1220" mass="139005" checksum="5A4864A8F1445986" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ07</accession>
    <name>A0A392LZ07_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">C3H1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000808">
        <property type="protein sequence ID" value="MCH80221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="302" mass="34284" checksum="589711BAE982C449" modified="2018-12-05" version="1">MEHHLAAMPYRSYQSQLQQGIIGVPNVGHGIQIPHHAYQAQQQELIGVFTKRYNEMAAQQFVDCIRCNSTHLNFPSGDIPENYCVSCLVSTANLANGLLLQQSEILNRRTALFNRINQFPSHQVNKFKTEECTKVPKCVNGMDCMFLHPGEKFKNIHSTLMRGIIFPQAPPSFPLMQGIFTAHYIEVVPYQFADCYRCNPKPWVVTGNIVMPDNQCVLCLVNMSKWRAHLEAENVDLLHKNVEMEVMIRILEVYQEIKGKTKMCTIVDCADLKCPFAHDEAELVPIQPPFSQGLLGPVLQDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZJ6</accession>
    <name>A0A392LZJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0001187</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001038">
        <property type="protein sequence ID" value="MCH80419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="40"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="118"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="592"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="118"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="164"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="595"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="609"/>
            <end position="620"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH80419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="731" mass="81572" checksum="2C97B2CDC4F80DD3" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M046</accession>
    <name>A0A392M046_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001263">
        <property type="protein sequence ID" value="MCH80616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M046"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="8"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16507" checksum="DBE4BFC2B905DA66" modified="2018-12-05" version="1">MGLLHVDCGGLFRDYMANFHGGYAQKIGTVSVLHVELIASIIAIKLANSKGWKYLWLESDTLTAFRAFDNIDLVPWDLRNRWSNCLSLGLNLQWSHIYREGNTCADKFAILGHAYANLRWWSSLPPILRVVFLSDNLGHPQHHTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M047</accession>
    <name>A0A392M047_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Replication factor A protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001369</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001239">
        <property type="protein sequence ID" value="MCH80599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M047"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="169" mass="18974" checksum="6A0ED900155EA91B" modified="2018-12-05" version="1" fragment="single">TTYQCELSGELVGILRNKVKFACPGLPIVIMQFAKIISREGTALVQGIEKMTKIYVNPPFVEAIFFRLVLNLSKVRSYLELGPPKNLPYISKDADFDRKFRLSISIQDESGSDVFVVYDDVMHATSANRSSNAAVIKYSPKARAKANQIKFVSPTMSTEYLAAEYMFPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0C7</accession>
    <name>A0A392M0C7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001457</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001349">
        <property type="protein sequence ID" value="MCH80685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9468" checksum="DEA524FCA0105770" modified="2018-12-05" version="1">MLFTAERGANQTPMADDSFRVKRVCMDPMLIETFCAEGPYYTPVKTMSQAIDLDSDDPSDDAETVEDSQGLDFLKSTCWWSKIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0F9</accession>
    <name>A0A392M0F9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001514</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001430">
        <property type="protein sequence ID" value="MCH80741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717:SF15">
        <property type="entry name" value="AGL218WP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45717">
        <property type="entry name" value="OS12G0527900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="35"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28881" checksum="4D271E08156DB795" modified="2018-12-05" version="1">MWILRRASLPLRMRGLNMYHSGYGSMGFSVGRHELSSEAGAKDTKDEDDDDLEEEGFSVEETPVGDEGEKLLDYDIELSDDSVSEEFDIEEQHNELELPLWHDEDGVSEVKKFSRRRVESELFKAIMDAPGLSIHTALDKWVEEGKELNREEISLAMVNLRKHKMYERALQEQYAKRGDIHKTEKIFYRMKQAAYAPGLREYQVLIEAYINAKVPAHGIRNRFPIYLIEEIDRSFCKEVVSTDDDATVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0G3</accession>
    <name>A0A392M0G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0001533</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001454">
        <property type="protein sequence ID" value="MCH80760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="516"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="850"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH80760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="850" mass="95901" checksum="E87D82F4FA83F71F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M1I7</accession>
    <name>A0A392M1I7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">glycine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0001953</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>tRNA(Gly) + glycine + ATP = glycyl-tRNA(Gly) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010001964">
        <property type="protein sequence ID" value="MCH81170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M1I7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015944">
        <property type="entry name" value="Gly-tRNA-synth_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075:SF2">
        <property type="entry name" value="GLYCINE--TRNA LIGASE, CHLOROPLASTIC_MITOCHONDRIAL 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30075">
        <property type="entry name" value="GLYCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02092">
        <property type="entry name" value="tRNA_synt_2f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH81170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16062" checksum="B503E8A0CF0677EC" modified="2018-12-05" version="1" fragment="single">VSVENLITKQTEQEIEVRGPPVSKAFDQEGNPTKAAEGFSRKNSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVTSGNSSCGLRNTTSAVVQVHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2H9</accession>
    <name>A0A392M2H9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ty3/gypsy retrotransposon protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0001588</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001521">
        <property type="protein sequence ID" value="MCH80814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="7">
        <location>
            <begin position="113"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="6">
        <location>
            <begin position="586"/>
            <end position="647"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="8">
        <location>
            <begin position="753"/>
            <end position="847"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH80814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="11">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="878" mass="99408" checksum="CE9AF4D96035CFE1" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M340</accession>
    <name>A0A392M340_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphatidylinositol-4-phosphate 5-kinase 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0002477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002634">
        <property type="protein sequence ID" value="MCH81686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M340"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH81686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6113" checksum="07C913E70E82E888" modified="2018-12-05" version="1" fragment="single">EARRAAEKAYDVAKVDERVNRAVSAANKAANAARAAASKAVQNEIHLNNESIRIPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3L7</accession>
    <name>A0A392M3L7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">60S ribosomal protein L34-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002680</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL34 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002918">
        <property type="protein sequence ID" value="MCH81886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3L7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.370.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008195">
        <property type="entry name" value="Ribosomal_eL34"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038562">
        <property type="entry name" value="Ribosomal_eL34_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018065">
        <property type="entry name" value="Ribosomal_eL34_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10759">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01199">
        <property type="entry name" value="Ribosomal_L34e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01250">
        <property type="entry name" value="RIBOSOMALL34"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01145">
        <property type="entry name" value="RIBOSOMAL_L34E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8683" checksum="74B99272AAA110CF" modified="2018-12-05" version="1" fragment="single">MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Y3</accession>
    <name>A0A392M3Y3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription initiation factor TFIID subunit 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002904</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003217">
        <property type="protein sequence ID" value="MCH82107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3Y3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005669">
        <property type="term" value="C:transcription factor TFIID complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004402">
        <property type="term" value="F:histone acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016251">
        <property type="term" value="F:RNA polymerase II general transcription initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017025">
        <property type="term" value="F:TBP-class protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051123">
        <property type="term" value="P:RNA polymerase II preinitiation complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040240">
        <property type="entry name" value="TAF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13900">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13900:SF0">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="71"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="269" mass="29553" checksum="12A01E1AC9120880" modified="2018-12-05" version="1">MNRGMNRHGSLSESSEGNEQPAPQLPPPLSPLPLPSPHLSSDSFSSPTHEFDSSKEQHQEEEEPPPPSLPSPHSSSSSFDSSSSADSVHEQPQALALQQPLPPPLLPLARSCLRRGYAEVGGNYRKTIARDYVTTRNAAQIGYGFRKYGRVIWYVLLKFNVPQEAIANQTREKHIAMIRKLSSEQAASGVKVDPTTMGIYAREGNSGLDFFAGDLENLLDGVKGLNMRRHTTLAQTKVEIEDEEAEAAELHMLLMDGAMVDASRVEYFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M415</accession>
    <name>A0A392M415_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Brefeldin A-inhibited guanine nucleotide-exchange protein 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002606</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytosol</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002808">
        <property type="protein sequence ID" value="MCH81813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032012">
        <property type="term" value="P:regulation of ARF protein signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00171">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.220.20:FF:000002">
        <property type="entry name" value="Brefeldin A-inhibited guanine nucleotide-exchange protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1000.11:FF:000006">
        <property type="entry name" value="HOPM interactor 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1000.11">
        <property type="entry name" value="Arf Nucleotide-binding Site Opener,domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023394">
        <property type="entry name" value="Sec7_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000904">
        <property type="entry name" value="Sec7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035999">
        <property type="entry name" value="Sec7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663:SF312">
        <property type="entry name" value="BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663">
        <property type="entry name" value="GUANYL-NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01369">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00222">
        <property type="entry name" value="Sec7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48425">
        <property type="entry name" value="Sec7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50190">
        <property type="entry name" value="SEC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SEC7" evidence="3">
        <location>
            <begin position="66"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="505" mass="56237" checksum="1E10062AD914FB98" modified="2018-12-05" version="1" fragment="single">DPNSVAASQTASIKGSSLQGLVSVLKSLVDWEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXDTTSDFEKAKAHKSTLEAAIAEFNRKPMKGVEYLISNKLVENKPASVAQFLKNSPTLDKATIGDYLGQHEDFPLAVMHAYVDSMKFSGMKFDTAIREFLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFVRMNAKDDPDECAPKELLEEIYDSIVKEEIKMKDDPSFIGKSSKQKSEGEEGRLVSILNLALPKRKSSEDAKSESEAIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVDAVGWPLLATFSVTMEEGDNKPRVILLMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLILCDSDMNSLQDTWNAVLECVSRLEFITTTPAISATVMYGSNQISKDAVVLSLRELAGKPAEQVFMNSVKLPSDSIVEFFTALCGVSAEELKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5G0</accession>
    <name>A0A392M5G0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003949">
        <property type="protein sequence ID" value="MCH82627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5900" checksum="F72D651F9F663BF0" modified="2018-12-05" version="1">MEDPPPPPPPPPPALHPNRDPISPYYIHPNENHSHVICISVLGWYKLPMAGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5G9</accession>
    <name>A0A392M5G9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003448</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003963">
        <property type="protein sequence ID" value="MCH82637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5G9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="2">
        <location>
            <begin position="127"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="215"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="377" mass="44165" checksum="CBE9828162160A8F" modified="2018-12-05" version="1">MEHEHLNLDEEDEIEIPEEELMKEGSTFNPELCLVGRFLTNKPVWEQHMMDHMAGVWTPPWEKGKRQSKCHLINTVPFWVQVHHLPAGYISKTVGQNVGDYIGELLDYDEKNSSDFWRKYMGIRVMVDVRKPLPKSKKIKKKGAEAIIVQLQYEKLGRFCYYCGILGHTEDSCNKLYSLDDDDETRKWGLELRIEARRKTSNDGGRWRRTEVPTLCDLVQKYRADVIFLCETLVHANKIEEVRVRLGFDASFAVDRVGRSGGLAILWKHPFDCNLINFSSNFINIEVNHPTYPKWRFTGFYGYRPDGGRRHDSWNLLRTLAQDNSLPWCIMGDFNDILSNDDKRSRVEHPPWRIRGFRSAVQDNNLTDLDRSYCQKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M5M7</accession>
    <name>A0A392M5M7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Lysine-specific demethylase 3B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003501</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004038">
        <property type="protein sequence ID" value="MCH82690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M5M7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032454">
        <property type="term" value="F:histone H3K9 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045109">
        <property type="entry name" value="LSDs-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549:SF42">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02373">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="JmjC" evidence="6">
        <location>
            <begin position="36"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="168"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="168"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="209"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH82690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="336" mass="37890" checksum="34E921AA229D2767" modified="2018-12-05" version="1" fragment="single">MLKLKGWLSSQVFKEEFPAHFSEVIDALPVQEYMNPMSGPLNLAANLQHGSVKHDIGPYVYISYGCADIEADSVTKLCCDSYDVVNIMTHSADVPLSTEQLTKIRKLLKKHKALCQVESVDTEQLPEQEVKGMTLSHAEEMEQKGLPSMGKEGMEFFRRVDRTSCISSTGAKKASTQSIDNNISQDGERGIFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M732</accession>
    <name>A0A392M732_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA excision repair protein ERCC-6-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004034</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004824">
        <property type="protein sequence ID" value="MCH83216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M732"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015616">
        <property type="term" value="F:DNA translocase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050496">
        <property type="entry name" value="SNF2_RAD54_helicase_repair"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629:SF7">
        <property type="entry name" value="DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45629">
        <property type="entry name" value="SNF2/RAD54 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18058" checksum="72083FBF91A21744" modified="2018-12-05" version="1" fragment="single">ECITSKGYDFLRIDGTTKSCDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M735</accession>
    <name>A0A392M735_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004910">
        <property type="protein sequence ID" value="MCH83277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="582"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="582" mass="65935" checksum="7DED9BC70AC7C826" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7N1</accession>
    <name>A0A392M7N1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005265">
        <property type="protein sequence ID" value="MCH83482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7N1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001969">
        <property type="entry name" value="Aspartic_peptidase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00141">
        <property type="entry name" value="ASP_PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="126"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="301"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="667"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="667" mass="74295" checksum="28ADA5AFD38BE16A" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7T5</accession>
    <name>A0A392M7T5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ninja-family protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">ABI-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0003992</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Acts as a negative regulator of abscisic acid (ABA) response.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the Ninja family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004762">
        <property type="protein sequence ID" value="MCH83175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031307">
        <property type="entry name" value="Ninja_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032308">
        <property type="entry name" value="TDBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31413">
        <property type="entry name" value="AFP HOMOLOG 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31413:SF43">
        <property type="entry name" value="NINJA-FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16135">
        <property type="entry name" value="TDBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tify" evidence="6">
        <location>
            <begin position="89"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU369029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH83175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13933" checksum="FA4746CF7EBE5C19" modified="2018-12-05" version="1" fragment="single">PRHSAEGAVDSNIDFQKPLGKEIPLPPKYPDAKLENQAKKLNLPNYCSLKGDVMEILRQMPTVTTTGDGPNGKRIEGFLYKYRSGEVCIVCVCHGSFLTPKEFVMHAGGKEVANPMKHITVYPVSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M868</accession>
    <name>A0A392M868_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Small G protein signaling modulator 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003792</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004475">
        <property type="protein sequence ID" value="MCH82978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M868"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.270:FF:000021">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.270">
        <property type="entry name" value="putative rabgap domain of human tbc1 domain family member 14 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.80">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000195">
        <property type="entry name" value="Rab-GAP-TBC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035969">
        <property type="entry name" value="Rab-GAP_TBC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22957">
        <property type="entry name" value="TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22957:SF456">
        <property type="entry name" value="YPT_RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00566">
        <property type="entry name" value="RabGAP-TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00164">
        <property type="entry name" value="TBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47923">
        <property type="entry name" value="Ypt/Rab-GAP domain of gyp1p"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50086">
        <property type="entry name" value="TBC_RABGAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rab-GAP TBC" evidence="2">
        <location>
            <begin position="5"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="313" mass="36144" checksum="890D9B3F1DBCA291" modified="2018-12-05" version="1" fragment="single">MSQGWAASEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDRRNLARMSDILAVYAWVDPATGYCQGYVFSCMSDLLSPFVVIFEDNADAFWCFEMLLRRMRENFQMEGPTRVMKQLRALWHILELSDRELFAHMSKIGAESLHFAFRMLLVLFRRELSFNEALSMWEMMWAADFDESWAFDLEENCLEALDLHLPSDSSNYIKEAIADSDDDSIKSGSQSSHNENDNTKASLQPHHGNTDHPVSDVKLKLQASHAFCGLARNIWSRNGRVQTRTISSLARKGNDELATFCVAAILVLNRQKIIRETRSFDDMIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8I5</accession>
    <name>A0A392M8I5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003913</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004649">
        <property type="protein sequence ID" value="MCH83098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8I5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF10">
        <property type="entry name" value="COPIA-LIKE POLYPROTEIN_RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="253"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="253"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="404" mass="44503" checksum="B634794F5EFD0A36" modified="2018-12-05" version="1" fragment="single">MVESTPSSSTPSPEPKSSSVPGQTMSSTIHPALTVPNITNFIKVKLDMDKSQYNTWSELFKIHATVYQVIDHIIPSEGDATEPSLKQTDPKLWSRLDAVVLSWIYGTISDDLLNTIIERNSTAEAAWNRLFEIFFDNKHSRALYLEQEFSRVQMEQFPNASAYCQHLKSLSDQMSNVGTPVSNERLVLQLISGLTDAYATVGSQIRHGDTLPPFYKARSMIVLEETARAKKAAATITDNSAFLASQDVAVNNSSSYQNSQSSNNHGGRGSNNTPSNRGRSGNRNNRGGRGRGRNGGQSNQSQYYQYPQQQWVVPPWAASWQPWATPPCPYPTTPNWPHQSTSRQQGILGPRPQQAHMAAASANNAQPSYASTDIQAAMHTLSLAPPNDQWYMDTGATSHMTANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M960</accession>
    <name>A0A392M960_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0004147</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005001">
        <property type="protein sequence ID" value="MCH83328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M960"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH83328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="105" mass="11890" checksum="B90E98E7AA688C3C" modified="2018-12-05" version="1">MKEEFISVGGGNGGGVQSFSARRCEKRGGGRSVAVLDKGLNLRRSRRPVEAMEGSFRWIRNYVVFLLCFCLYLFYFAACDLLVESQILVRYLGAAVCCYQLRFSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAN7</accession>
    <name>A0A392MAN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Allantoinase 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006454">
        <property type="protein sequence ID" value="MCH84213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004038">
        <property type="term" value="F:allantoinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006145">
        <property type="term" value="P:purine nucleobase catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050138">
        <property type="entry name" value="DHOase/Allantoinase_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43668">
        <property type="entry name" value="ALLANTOINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43668:SF2">
        <property type="entry name" value="ALLANTOINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydrolase-related" evidence="1">
        <location>
            <begin position="18"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="19470" checksum="658F1D10EC956780" modified="2018-12-05" version="1" fragment="single">MISICHILAYYINYFRRHVHLDEPGRTEWEGFVTGTRAAAAGGVTTVVDMPLNNDPSTVSKETLELKLKAAENKIYVDVGFWGGLVPENALNTSILEGLLDAGVLGLKSFMCPSGINDFPMTTIDHIKEGLSVLAKYRRPLLVHAELQQDSKSKLELEGNHNPLAYKTYLDTRPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAT4</accession>
    <name>A0A392MAT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RING finger protein 44-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007068">
        <property type="protein sequence ID" value="MCH84592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="278" mass="29954" checksum="C44429578DB2837B" modified="2018-12-05" version="1">MTDSDMDQQRQGYFHSEPCVLLRGPNVGHPNIRSVVTASGNATNVDSHYLPDAYDNARVYGITQYNGMQPQHNLEMGVATAGNIYYSGMNPSSSTGVFPLPHRASDQLPGSSTFAISGVSLDNFGRSAGFMDDARGPYKRKVAEGIRGNHQHFNASTSSSIAPPNARHADGVAMMDTAPLPFRVPSLIGVGPHGGAWSRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLDQQVNTSSNDGHTAAWNPSVPXXXXXXXXXXXXXXXXXXXXXXXXXFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBF2</accession>
    <name>A0A392MBF2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0005674</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007466">
        <property type="protein sequence ID" value="MCH84837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="20"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="39"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8182" checksum="91DEAD3C89BEA7F3" modified="2018-12-05" version="1">MFTIKGRKYNIEYEGLHLLCLTCGKFGHYKEGCPDKSMNVGQHGEGSRRNQNEVRANGLTDGGVDGPWRVVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MBM3</accession>
    <name>A0A392MBM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">High mobility group B protein 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0004470</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005524">
        <property type="protein sequence ID" value="MCH83644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MBM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd22009">
        <property type="entry name" value="HMG-box_AtHMGB9-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.60">
        <property type="entry name" value="ARID DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.30.10">
        <property type="entry name" value="High mobility group box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001606">
        <property type="entry name" value="ARID_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036431">
        <property type="entry name" value="ARID_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009071">
        <property type="entry name" value="HMG_box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036910">
        <property type="entry name" value="HMG_box_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46691:SF1">
        <property type="entry name" value="AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46691">
        <property type="entry name" value="HIGH MOBILITY GROUP B PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00505">
        <property type="entry name" value="HMG_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00398">
        <property type="entry name" value="HMG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46774">
        <property type="entry name" value="ARID-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47095">
        <property type="entry name" value="HMG-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51011">
        <property type="entry name" value="ARID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50118">
        <property type="entry name" value="HMG_BOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ARID" evidence="4">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="HMG box" evidence="3">
        <location>
            <begin position="168"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="HMG box" evidence="1">
        <location>
            <begin position="168"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH83644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="249" mass="28844" checksum="4544C6122F7A3C3E" modified="2018-12-05" version="1" fragment="single">VVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFTPSADAFSGNSPSWRPELAIVQYSPKMVNDSAESHDEVNVDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVAAPSLVPQHAIVPFNLQSHSSGRRKRRKRNWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQTEELGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD57</accession>
    <name>A0A392MD57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pleckstrin-like (PH) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006303</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008543">
        <property type="protein sequence ID" value="MCH85457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34837">
        <property type="entry name" value="OS05G0595500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34837:SF6">
        <property type="entry name" value="PLECKSTRIN-LIKE (PH) DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="41"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18672" checksum="2CA70A253447AA50" modified="2018-12-05" version="1" fragment="single">LSLSPGAICGVLRTLRPAFMMKLFTLRGLPWSPSNGSREKVELTAAEVESLRSELADLEEKEAQLKAQLENIDEILRSARLSGYLYIRTRWAALPGETPPIDDTDVDDWLPRFXVLQGECLFLYLLCTDLSPQDSTLLSDIVEVDSWLSALQSDCKLESDTSTPNGSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEU1</accession>
    <name>A0A392MEU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NB-LRR type disease resistance protein Rps1-k-2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009161">
        <property type="protein sequence ID" value="MCH85801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056789">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF42">
        <property type="entry name" value="DISEASE RESISTANCE RPP13-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25019">
        <property type="entry name" value="LRR_R13L1-DRL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="R13L1/DRL21-like LRR repeat region" evidence="1">
        <location>
            <begin position="28"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="512" mass="57939" checksum="32E1DE557F240463" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MF21</accession>
    <name>A0A392MF21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006940</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009706">
        <property type="protein sequence ID" value="MCH86086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MF21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034663">
        <property type="term" value="C:endoplasmic reticulum chaperone complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030968">
        <property type="term" value="P:endoplasmic reticulum unfolded protein response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000028">
        <property type="entry name" value="heat shock 70 kDa protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45639:SF34">
        <property type="entry name" value="CHAPERONE PROTEIN DNAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45639">
        <property type="entry name" value="HSC70CB, ISOFORM G-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10970" checksum="37358AA7C6D0956B" modified="2018-12-05" version="1" fragment="single">LISFWVRSCEGVQDAFDYNSEEKLLQPQEIYAMILQKLKNMVEDFLGTTVVDAVVSVPTSFNMVPHQTIREAEMISGLNVLRLINDPTATALNYMCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG13</accession>
    <name>A0A392MG13_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">A2U01_0006038</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MCM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010008059">
        <property type="protein sequence ID" value="MCH85194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990518">
        <property type="term" value="F:single-stranded 3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000727">
        <property type="term" value="P:double-strand break repair via break-induced replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902969">
        <property type="term" value="P:mitotic DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041024">
        <property type="entry name" value="Mcm6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041562">
        <property type="entry name" value="MCM_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF43">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17855">
        <property type="entry name" value="MCM_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18263">
        <property type="entry name" value="WHD_MCM6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM AAA-lid" evidence="9">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="Mcm6 C-terminal winged-helix" evidence="10">
        <location>
            <begin position="103"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="52"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="8">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="79"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF18263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH85194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="26017" checksum="6C0D776CF0269D23" modified="2018-12-05" version="1">MTVRQLEALIRLSEAIARCHLDNQVQTRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDMDEEAGSGEGNDNNDADDGQVGSSTAQQAAGTNEKPADGSIPQRKKSTVTDEYFQRITKALVMRLRQHEETVMQQEHGETVMQKGDGLAGMRQRDLIKWYVDQQNEKNNYSSVEEAKVEISQIKAIIEILIRREGHLIVVDDGRQTATEAAGAEQSESAARNDRILAVAPNYVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGD7</accession>
    <name>A0A392MGD7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010499">
        <property type="protein sequence ID" value="MCH86547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGD7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11643" checksum="B563D7AA69055326" modified="2018-12-05" version="1">MAGAVPKPFKMLREAVVLKVSLLNEDGGQKLNRDGCSIEGECAHFSIWKRGNVLLILRNLDTEFLMGGYHQFTYEVVGNSALVTATPAVCYWDTLLAFIATEQHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGQ0</accession>
    <name>A0A392MGQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0007542</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010763">
        <property type="protein sequence ID" value="MCH86682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43383:SF2">
        <property type="entry name" value="AMIDOHYDROLASE 2 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43383">
        <property type="entry name" value="NODULIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="2"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="217"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH86682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="496" mass="56865" checksum="0906EA6320DC3942" modified="2018-12-05" version="1" fragment="single">QDKFDSRAEKCVFVGYPKGQKGWTVYNLKTQEIYVSRDVVFYEDIFPYASHEKDSNRENHSSTFTLDFCSVGEEIAPSNDGQQDQIIISNEQREEQVVETNSDVITEVEEPQNKGESETMINIDMGPRNRHPPKRLDDYYCYSAEKTHTCTSPKTSTSSGIIYPIANYVNYDEFSQKHQAYLAAVESIEEPQSYKQAIHKQEWREAMSQELKALEENKTWEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFQECEADHSLFTYSHGSTFIVVLIYVDDLVVTGNDAKSCEKFKQYLSKCFHMKDLGELKYFLGLELARGSSGLFICQRKYALDILNECGMLACKPSSIPLEPNHKLALDSSPLYENPSQYRRNLTRGIGMRLCMFCGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGU7</accession>
    <name>A0A392MGU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000650</name>
        <name evidence="2" type="ORF">A2U01_0007123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000473">
        <property type="protein sequence ID" value="MCH79889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010010043">
        <property type="protein sequence ID" value="MCH86269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH79889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13829" checksum="E314E85774DF7C6A" modified="2018-12-05" version="1">MKYADYYYKVKPTSDVALKGSRRRVDVRWKAPQHDWICLNTDGALLCRLAVVVSSETLVVFGKEALRKMLGELVIIWRSFGEYTKGVEVGNPHGRILNWNNVSSFSCLSGSKQGCGCYSFIGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHG7</accession>
    <name>A0A392MHG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010659">
        <property type="protein sequence ID" value="MCH86633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22157">
        <property type="entry name" value="F-box_AtFBW1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="24"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14416" checksum="9EE7980871AAAC4D" modified="2018-12-05" version="1">MALISEDKRNDAVCSPLKRQLTSSPSLPTLPFDLIPEILSRQPVKLLLQFRCVCKSWNSLISDPKFAKKHLSLSTTTYNLHCLSYFDIYIPIRSYSRDDSVLTNVTTTNISQLGLPLNRNKLFLSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHS5</accession>
    <name>A0A392MHS5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">adenylate kinase</fullName>
            <ecNumber evidence="3">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">A2U01_0007917</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>UMP + ATP = UDP + ADP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.14"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010011426">
        <property type="protein sequence ID" value="MCH87052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:AMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000315">
        <property type="entry name" value="Adenylate kinase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006266">
        <property type="entry name" value="UMP_CMP_kinase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01359">
        <property type="entry name" value="UMP_CMP_kin_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="NUCLEOTIDE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00406">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 13 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCH87052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="18972" checksum="9D3D30B81C6A2676" modified="2018-12-05" version="1" fragment="single">MGPPQVDGGIGPLGLVGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIQENGNDKFLIDGFPRNEENRAAFEKVTGIEPTFVLYFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHV9</accession>
    <name>A0A392MHV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010651">
        <property type="protein sequence ID" value="MCH86629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3687" checksum="1063CC4932A143EF" modified="2018-12-05" version="1" fragment="single">MKETMLQRATFIGIGTVEGMNYRPLSDNILLCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIM4</accession>
    <name>A0A392MIM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012033">
        <property type="protein sequence ID" value="MCH87352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11061" checksum="189B4E3C0A012201" modified="2018-12-05" version="1">MEFVAKMENAIIFERANLGSNEMIMAMMLMTFDEGKQHAEEGYTEDQKDLIARQHALIDSDQEKLRLYIERRNELIVKIALRERVFGCIPPASEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJX4</accession>
    <name>A0A392MJX4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Anaphase-promoting complex subunit 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008697</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012969">
        <property type="protein sequence ID" value="MCH87816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJX4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15273" checksum="D7FA168DE62613E1" modified="2018-12-05" version="1" fragment="single">MEDSHSSLFNLGILDTLTDDELHEILDSYDAFCNATQSLLGGAGDLSYGAQFVSHVHTLCKHGLESLVLDHFLKVLEETFERNGASRFWRHFDPYADFVGLNKNDDINIDEDEIESVLYNALEEISIEKQYQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK80</accession>
    <name>A0A392MK80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008781</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013117">
        <property type="protein sequence ID" value="MCH87900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6450" checksum="EB01062CFF4E5FCA" modified="2018-12-05" version="1" fragment="single">MSTPRRSTKNRASNVPVQPQLLPIDISSDDDPADEGRYKWEQEVTPSIANLTKKRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLE0</accession>
    <name>A0A392MLE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Wound-responsive family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013908">
        <property type="protein sequence ID" value="MCH88307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21669">
        <property type="entry name" value="CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21669:SF27">
        <property type="entry name" value="WOUND-RESPONSIVE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11969" checksum="B6400BB7EAE3301B" modified="2018-12-05" version="1" fragment="single">KSEYMHKKDGSSVRPKSSMLEKALGELEKMVAESRPPAAENPEADNTSQAVKRRLPREVKLKLAKVARLAASQGKVSKELINRLMSILGHLMQLRTLKVLPLLNINR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLF6</accession>
    <name>A0A392MLF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012972">
        <property type="protein sequence ID" value="MCH87819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13871" checksum="CE74860D80E7210A" modified="2018-12-05" version="1">MEAALAPGKGEGQFTRGATTRAELVGQVNIVLGELSKAAKLGFSRAVEQLEILNPGLKTEGSGFWRKVEDGEVVLPPENVDKEKEDAEVEEAANVEEGEDDEMEQNQEHPIVDEHKDDGEEHEDESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMU3</accession>
    <name>A0A392MMU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012535">
        <property type="protein sequence ID" value="MCH87604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="23"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="96"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24119" checksum="74E2613FEE341944" modified="2018-12-05" version="1" fragment="single">MSALKDPNWKMAMDDEYNALIKNKTWDLVPRPTDVNVIISMWIFRHKEKSEGSFERHKALLVGDGAGQQVDVNCGETFSPIVKPATIRTKDTHMAYILLYVDDIILTTSSKALRQSIMSLLSSEFAMKDLGSLSYFLGIAVTRHTDGLFLSQKKYAEEIIERTGMSSCKACPTSVDTKLKLSAKNSTPYEDPSLYRSLAGALQYLTFTRPDISYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MND8</accession>
    <name>A0A392MND8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0009358</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014233">
        <property type="protein sequence ID" value="MCH88469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MND8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF42">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="3">
        <location>
            <begin position="18"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH88469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="24043" checksum="3F7191550E678E28" modified="2018-12-05" version="1" fragment="single">GILRNIASPLNTLGFHRHSKLKMLPTEMIHLHALQQLYINDCKNIEELPHEVTQRLHSLKELDIVGSDKFKLSSGFQYLTCLETLAIGSCSDVEGFHEALQHMSTLKSLTLSDLQNLEYLPECIGNLTLLHEINIYQCPKLSCLPKSIQHISGLEILSIHGCPELEKRCQKEIGEDWSIIARVKYIDIQNDGLIHGGHGGGYFEADAGFLWTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPA5</accession>
    <name>A0A392MPA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015945">
        <property type="protein sequence ID" value="MCH89340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4834" checksum="039B28E36A6A829C" modified="2018-12-05" version="1">MGRQWLTFKIEAATPNDGRGSKQEKLHGGLPAAEKRHRRTSCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPK6</accession>
    <name>A0A392MPK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Anaphase-promoting complex subunit cdc20-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0009782</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the WD repeat CDC20/Fizzy family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015057">
        <property type="protein sequence ID" value="MCH88889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005680">
        <property type="term" value="C:anaphase-promoting complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010997">
        <property type="term" value="F:anaphase-promoting complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990757">
        <property type="term" value="F:ubiquitin ligase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031145">
        <property type="term" value="P:anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1905786">
        <property type="term" value="P:positive regulation of anaphase-promoting complex-dependent catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033010">
        <property type="entry name" value="Cdc20/Fizzy"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056150">
        <property type="entry name" value="WD40_CDC20-Fz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19918">
        <property type="entry name" value="CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19918:SF39">
        <property type="entry name" value="TRANSDUCIN FAMILY PROTEIN_WD-40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24807">
        <property type="entry name" value="WD40_CDC20-Fz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0498">Mitosis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 7" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="CDC20/Fizzy WD40" evidence="8">
        <location>
            <begin position="2"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="28"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="104"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="241"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF24807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH88889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="34514" checksum="A0E1CCD78176740F" modified="2018-12-05" version="1" fragment="single">MDTRVLLWNPSKKTVAEIVDDYEDGFFTSICWSPDGRYIAIGLDNSTVQIWDAFLPRKVRTLRDGHSGRVGSLAWNGPILTTGGTDGKIVNHDVGVRSHMVGSYRGHQQGVCGLKWSPSGTQLASGGNDNVVRIWDSSVVSSDSRSTGWLHRFEEHTASVRALAWCPLQNNLLASGGGEGDHCIKLWNTRTGACLNSVDTGSQVCALAWNKNERELLSSHGFPHNQLTLWKYPSMLKMAELNDHTSRVLYMAQSPDGCTVATASGDKTLRFWNVFETPTAAPIKKYEXXXXXNFNSYVWIDGMRWSGMEWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPP2</accession>
    <name>A0A392MPP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MATE efflux family protein 4 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0010376</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016224">
        <property type="protein sequence ID" value="MCH89480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044644">
        <property type="entry name" value="DinF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893">
        <property type="entry name" value="PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42893:SF9">
        <property type="entry name" value="PROTEIN DETOXIFICATION 46, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH89480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="19762" checksum="1E98EBB7AAFC7303" modified="2018-12-05" version="1" fragment="single">LGMKDSWGPLKALAAASIINGIGDIILCRYYSYGIAGAAWATLASQVVAAYMMSQTLIEKGYNAFAFSIPSGKEFLSILGLSAPVFVTFTLKVAFYSLLIYFATSMSTHKMAAHQVILQIYNLCTICGEPLSQTAQSFMPEFMYGVNRSLAKVSDTHSVISKDLSSNLIYTVSVLEFSFVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ83</accession>
    <name>A0A392MQ83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010319</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016122">
        <property type="protein sequence ID" value="MCH89423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="290" mass="32407" checksum="B299E50B5FEC174F" modified="2018-12-05" version="1">METTTNPPENFFIPWSCLQDQVVKPSSSSTPSVTAQKSFADVVNNVCDIPASQLPQSVVKGDRIAIAIPEEEYQAGVVACKHCLHGRMIWPKGATPLKVSDLKAKLYPLWKTHQPKFGLGSLVCHKNTGYRRFYLQLLVVWVLPFVLINSLTNLSLIENLDILLGFWWIWTSKKNLFIGCIGHDMSICKKAKGDXXXXXXXXXTRKGVQQPQKKDYAVVKDNRKNNATVPLVEVINLEATTSKANEVFDPLLESILKHKETGEEPEEIVTPKEVTQTSLAAHQRDTEGTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQ84</accession>
    <name>A0A392MQ84_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF630 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010570</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016632">
        <property type="protein sequence ID" value="MCH89670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006868">
        <property type="entry name" value="DUF630"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006867">
        <property type="entry name" value="DUF632"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21450:SF17">
        <property type="entry name" value="OS09G0542500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21450">
        <property type="entry name" value="PROTEIN ALTERED PHOSPHATE STARVATION RESPONSE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04783">
        <property type="entry name" value="DUF630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04782">
        <property type="entry name" value="DUF632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF630" evidence="3">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="DUF632" evidence="2">
        <location>
            <begin position="279"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH89670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="311" mass="34893" checksum="6D96C94A50E3F2CB" modified="2018-12-05" version="1" fragment="single">MGCVASKLEEEEEVVAICRERKRQLKLAVEKRYALAEAHCKYFHSLNAVAAAIKLFVARHSSPSSPFLITFPPKGFDPSPSHSSSTTENVINNPMFLQQTPSETKHESIAACDSCIVSTTSSESSEDEEEGEHGCRVEQNEQQASEYFYMHMPMNMNMNMNMNMPPPAMPSPQRDFGWDFFYPFDSVRQEVMSGYHRNSDDDLRXVREEEGIPELEDEMERGEIEHKVAVSVEEKSNESGGQVVNNGVEAAKTVDLANENVGEQKGLAVLDTPAEGRELLEALKDIEDHFVRAYESGKNVTKMLEANRIPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MRJ8</accession>
    <name>A0A392MRJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cell adhesion molecule-related/down-regulated by oncogenes</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0010837</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017231">
        <property type="protein sequence ID" value="MCH89933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010605">
        <property type="entry name" value="DUF1191"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33512:SF14">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33512">
        <property type="entry name" value="PROTEIN, PUTATIVE (DUF1191)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06697">
        <property type="entry name" value="DUF1191"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017360988" evidence="3">
        <location>
            <begin position="21"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="248"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="302"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH89933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="323" mass="35283" checksum="4E9840114ADC7355" modified="2018-12-05" version="1">MLLLVLILSSLTGRQVVVMGDDDDDSTAKANSLDSILQEYAYRALVKPKTGTIYNATTQLPSNFTGVTLAALRLRSGSLRRYGVPNYNEFQIPKGLVQTPYVKRLVLVYQNLGNNNNNWSSNYYPLPPNHTYVAPLLGLVAYNGSDLSATNLSHLSLNASGDPIIVRFRDVKSPPPGTLPKCVCFDLFGSSHFTNVTGGNTCSTFQQGHFSIVLHSTLPPPXXXXXXXXXXXXXXXXXXXXXXNKKKVWIIVGSVLLGGLASLTLLSLLVLWVLRCKQTKKIQEMERAADTGEALRMTSVGNTKAPTASHTRTLPTIENEYAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS70</accession>
    <name>A0A392MS70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional activator DEMETER-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0010394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016273">
        <property type="protein sequence ID" value="MCH89498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035514">
        <property type="term" value="F:DNA demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0141166">
        <property type="term" value="P:chromosomal 5-methylcytosine DNA demethylation pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044811">
        <property type="entry name" value="DME/ROS1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46213:SF24">
        <property type="entry name" value="HHH-GPD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46213">
        <property type="entry name" value="TRANSCRIPTIONAL ACTIVATOR DEMETER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="114"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH89498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="307" mass="34660" checksum="D33F0D44FE97C808" modified="2018-12-05" version="1" fragment="single">MHSGENIKYDADSSLMISQQVELAVENQQPRNTGDITLPLKEKETGELVFENMFQLPNILSNSIEAKGSKRKYSSSTKNRHNTATNPLGTSLCQDILQVDGNIKGATLAKGFLKKNKRKRTQNRLDAKVRGGSSSQIKPKDDSQKVRKEEKNGFQSHKEEITNCCIESSRFVEKQNSGASTGDSLAISGEPDQIYSTLIDKIICQLNSLNFNEGNTSEMEGQKALVPYKGDGSIVPYQEFGFEKKHKPRPKVDLDPETERAWKLLMGKEESEDLGETDKEKEKWWEEERNVFRGRADSFIARMHLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSS4</accession>
    <name>A0A392MSS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018497">
        <property type="protein sequence ID" value="MCH90521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004332">
        <property type="entry name" value="Transposase_MuDR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973:SF93">
        <property type="entry name" value="OS01G0595300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973">
        <property type="entry name" value="POLYPROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03108">
        <property type="entry name" value="DBD_Tnp_Mut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase MuDR plant" evidence="1">
        <location>
            <begin position="19"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="29037" checksum="179C8DBE816A5388" modified="2018-12-05" version="1" fragment="single">MDNHLVLDDTSVTIAEQPLVIGQEFPDVETCRRTLKDIAIAMHFDLRIVKSDRSRFIAKCSKEGCPWRVHVAKCPGVPTFTIRTLQGDHTCEGVRNLHHQQASVGWVARSVESRIRDNPQYKPREILQDIRDQHGVAVSYMQAWRGKERSMAALHGTFEDGYRFLPAYCEQIRKTNPGSIASVGATGQENCFQRLFISYRASIYGFINACRPLLELDRAHLKGKYLGSILCAAAVDADDALFPLAIAVVDTESDENWM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSW6</accession>
    <name>A0A392MSW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010018250">
        <property type="protein sequence ID" value="MCH90413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7482" checksum="1B82707C2C82C17A" modified="2018-12-05" version="1" fragment="single">RKPPKNGGNACVDAGTNEIVPPVGLHRKTSGRIRNCTVKKLKGPGSSSNVPLVIDDDADDEAEDGDQIDGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU10</accession>
    <name>A0A392MU10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter C family member 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0011885</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019414">
        <property type="protein sequence ID" value="MCH90961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18579">
        <property type="entry name" value="ABC_6TM_ABCC_D1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:006107">
        <property type="entry name" value="Uncharacterized protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044746">
        <property type="entry name" value="ABCC_6TM_D1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF181">
        <property type="entry name" value="ABC TRANSPORTER C FAMILY MEMBER 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="13"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH90961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="339" mass="37229" checksum="8E7DC14883D6C3ED" modified="2018-12-05" version="1" fragment="single">MTVEAERVGAFSWYMHDLWLVVLQVTLALLILYKNLGLASIAAFVTTIIVMLANVPLGSWLEKSQNNLMESKDTRMKATSEILRNMRILKLQGWEMKFLSQITMTTIVFWGAPTLISVVTFGTCMLIGIPLESGKILSALATFGILQEPIYNLPDVISMIAQTKVSLDRITSFLCLDDLQSNVVEKLPPGSSDTAIEVVDGNFSWDLSSPSPNLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCRTKAYVAQSPWIQSGKIEDNILFGEHMVREGYEKVLEACSLKKDLEILSFGDQTVIGEHGINLSGGQKQRIQIARALYQDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV00</accession>
    <name>A0A392MV00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar sorting protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019039">
        <property type="protein sequence ID" value="MCH90779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8487" checksum="9B130B3754A50AB3" modified="2018-12-05" version="1" fragment="single">GGFSPTLPRDMACVVFIEAWEALTLQAGFCVELDRLAVYLDSDIIPWHVDKAWEDLLPSEWFQVCTVDIRVDSEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVE8</accession>
    <name>A0A392MVE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0012199</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyltransferase 47 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020064">
        <property type="protein sequence ID" value="MCH91273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004263">
        <property type="entry name" value="Exostosin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040911">
        <property type="entry name" value="Exostosin_GT47"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062:SF206">
        <property type="entry name" value="EXOSTOSIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11062">
        <property type="entry name" value="EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03016">
        <property type="entry name" value="Exostosin_GT47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Exostosin GT47" evidence="6">
        <location>
            <begin position="11"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH91273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="25537" checksum="03877A788849F8BC" modified="2018-12-05" version="1" fragment="single">GPETSFSVPYLHKNSIRVLCNANTSERFNPAKDVSFPEINLQTGSINGFLGGPSASQRPILAFFAGGLHGYIRAILLDHWENKDQDIMVQKYLPKGVSYYEMLRKSKYCLCPSGYEVASPRVVEAIYTGCVPVLISDHYVPPFSDALNWKAFSVEVSVEDIPKLKDILMRISPTQYIRMQRRVGQIRRHFEVHSPPKRYDVFHMILHSVWLRRLNFRVHNDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVT0</accession>
    <name>A0A392MVT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Niemann-pick C1-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012329</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020349">
        <property type="protein sequence ID" value="MCH91402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032934">
        <property type="term" value="F:sterol binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015918">
        <property type="term" value="P:sterol transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053956">
        <property type="entry name" value="NPC1_MLD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45727:SF2">
        <property type="entry name" value="NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22314">
        <property type="entry name" value="NPC1_MLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NPC1 middle luminal" evidence="1">
        <location>
            <begin position="12"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10078" checksum="249245A31BEC1378" modified="2018-12-05" version="1" fragment="single">LILGTVPDHVNSTSRIVSEDNIRFLFEVQKKVDAIRANYSGLMVSLQDICMKPLDKDCATQSILQYFKMDPNNFDNYGGVEHLNYCFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWY1</accession>
    <name>A0A392MWY1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Exocyst complex component Sec8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SEC8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019923">
        <property type="protein sequence ID" value="MCH91208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006612">
        <property type="term" value="P:protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090522">
        <property type="term" value="P:vesicle tethering involved in exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039682">
        <property type="entry name" value="Sec8/EXOC4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14146">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14146:SF0">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="1" id="KW-0653">Protein transport</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8186" checksum="0F083D1F24C22E22" modified="2018-12-05" version="1" fragment="single">VDLVRQGWGRKAPNVLQEGYGSAAVLPEEGIYLAASVYRPVLQFTDKIASMLPTKYSPLGDMYLFILLELALNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXU8</accession>
    <name>A0A392MXU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protein STRUBBELIG-RECEPTOR FAMILY 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0013277</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022470">
        <property type="protein sequence ID" value="MCH92340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000095">
        <property type="entry name" value="protein STRUBBELIG-RECEPTOR FAMILY 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985">
        <property type="entry name" value="OS07G0668900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47985:SF44">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE PBS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH92340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="16840" checksum="2E66B6046251F7E8" modified="2018-12-05" version="1" fragment="single">MALGTARALEYLHEQCQPPVVHRNLKSANVLLDDDLSVRVSDCGLAPLIASGSVTQLSGNLQSTYGYGAPEFESGTYTYQSDVYSVGVVMLELLTGRQSHDRTRPRGEQFLARWAIPKLHDIDALSKMVDPSLNGVYPAKSLSNFADIIARCLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYD4</accession>
    <name>A0A392MYD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022880">
        <property type="protein sequence ID" value="MCH92530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="35"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="403" mass="45566" checksum="86F9989186416810" modified="2018-12-05" version="1" fragment="single">MREKVERGGRKGWEEGEVRTQRRKGFVHRLDQETTSFFFTNFPDDAKVTELWSKFARHGRVGEVYVPKKLDKQGRRFGFVKFREVRDGGEMLSRLGDIWLGTYKLRVNLSRFNREDNREEVREEVPESSMAAEARHHPGRSFKEAVVADVAHRSLVEVPKLNAGQNLTEVVWEVEVEPESVAKLKGAFVGFLAEYKETLEIQQKLVLDGFQKIKVSPLGHLRVLLSSDVEGEVKDLVRTVGWWSTWFDRFEEWSPEHVSNHRAIWLRCFGVPLHAWGDALFRSVAFKYGVFIEVDSSTKNMLRGDMARIKIVTKKLTLIDSSMTISVLGKNFVIRVMEEGGVGNEEVVSCSCRCKLWRDVVSSRGSADGGSVAAVVAGSVDEGSDDGWSENGQVLLGVGRQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYV4</accession>
    <name>A0A392MYV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0013679</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023319">
        <property type="protein sequence ID" value="MCH92736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447">
        <property type="entry name" value="OS03G0856100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447:SF17">
        <property type="entry name" value="OS12G0638900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13812">
        <property type="entry name" value="PPR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="26"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="151"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="186"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="221"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="362"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="393" mass="44172" checksum="AA45AE546013DB9D" modified="2018-12-05" version="1" fragment="single">ILGRAQQWDELRLCWIEMAKNNVLPTNNTYSMLVHCYGKAGLAKEALLWIKHMMMRGFFPDEVTMSTVVKVLKDVSEFDRADRFYKNWRGGKVDLDDLDFDSSSAFTTADGSKSSVPISLKQFLSTELFKTGGGIRDSNDMENASPQKPLRTFTYNTMIDLYGKAGRLQDAADVFADMMKSGVALDSCTFNTMISISGSHGNLLEAESLLVKMEEKGISPNTRTYNILLSLYANAGNIDAAVSCYRRIEEAGLFPNVVTYITLLGVLCTENMVQAVEAVIDEMEISSVSIDDHSLFDIVKMYVNEGDLDKANDLLQKFQMNREPSSMICASIMDAFAEKGLWAEAESVFYRKRDMAQLQKRDIVEFNVMIKAYGKAKLYDKAVFLFEEMKNQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZN5</accession>
    <name>A0A392MZN5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">F-box protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013317</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022561">
        <property type="protein sequence ID" value="MCH92379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051304">
        <property type="entry name" value="SCF_F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123:SF15">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="domain" description="KIB1-4 beta-propeller" evidence="2">
        <location>
            <begin position="158"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="303" mass="35096" checksum="C1BF4ED158DCC544" modified="2018-12-05" version="1" fragment="single">MAAVDWSELPKELLNLISQRFDIELDLLRFRSVCSTWRSSSIPNHYHILPFKYSFNNFGYTNKRDNTSSSHISKQNIYLIKPSPPQQQQQQDQTLLRPWLIRTSQTSHDKTKLFHPLLTNIKFRAISFTHVLDFNKFSVLQLKTNFIINIPQHFLEKLVAVTCHGKKPIVLGTWTFFLPPPLNYGNDDDENVNWKVIPDISIKYGDLCLYNGRAYAVDMTGRTVMVRPEDDSSVQLVAEPFIDGGHIKFLVESEGDLLLVDVYNCNPVLGHDRLRIDLFKLNEKEKKWVKFTSLGDRVLFLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N168</accession>
    <name>A0A392N168_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding transcription activator 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024694">
        <property type="protein sequence ID" value="MCH93333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N168"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd23767">
        <property type="entry name" value="IQCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335:SF29">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23335">
        <property type="entry name" value="CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21239" checksum="4E81D7F87EFD5342" modified="2018-12-05" version="1" fragment="single">ERTVAALVSMGADCGALTDPSPEFPSGRTAADLASSNGHKGLSGFLAESSLTSHLEALTVDDQQKGGLQEVLGTKAVQTVSERTATPVYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLLDQRALSLLASKASKSGQGDGLVNDAATQIQKKYRGWKKRKEFLIIRQRIVKIQVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N365</accession>
    <name>A0A392N365_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0014357</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024865">
        <property type="protein sequence ID" value="MCH93408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N365"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16454" checksum="946489A61E8088F9" modified="2018-12-05" version="1" fragment="single">GTLFVKSLPYGGKLLLMNDDCICSILCFVTMFKIGRRIIGKGLESGAPTMRLKGQLPDRSASFLKNFQQVHRGPSTTRNQFWSKQHIPLLLQVGRMFSTVPQFADIDVETLQAEVDWRRSDTMTEIDNQCGCRMNLKNDFFYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3P5</accession>
    <name>A0A392N3P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015150</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026741">
        <property type="protein sequence ID" value="MCH94193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021374">
        <property type="entry name" value="DUF2996"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36341">
        <property type="entry name" value="DUF2996 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36341:SF3">
        <property type="entry name" value="DUF2996 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11210">
        <property type="entry name" value="DUF2996"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13866" checksum="D434193AB3614B39" modified="2018-12-05" version="1" fragment="single">PKAATEKKAPPAKAPVKPLPQMMEEDVIPSLKAILEAQQDLSDLQLVFQDNKLEGSFSKKGNPYSFWAFFPTGLTGPKGFSLSSYNSGASTVEPFLVDEKKVTAKLIVFWVEKRLAAQGIIPVWKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5L4</accession>
    <name>A0A392N5L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol-3-phosphate acyltransferase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0015852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028407">
        <property type="protein sequence ID" value="MCH94883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6518" checksum="66EDD3E8701A2E9C" modified="2018-12-05" version="1" fragment="single">MNSTGTLKSSSSELDLDRPNIEDYLPSGAAIQQEPRGKLRLHDLLDISXXXXXXXGAIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5V8</accession>
    <name>A0A392N5V8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028649">
        <property type="protein sequence ID" value="MCH94983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9301" checksum="078142E1DD339EF5" modified="2018-12-05" version="1" fragment="single">MAVLEETTKWKGLMTKVHANSILVVFGSGLVNFGREMRSIGIFXVWDRPVIKKNYAENSDYGINAFRRALEVSVVLFKRHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N757</accession>
    <name>A0A392N757_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acylamino-acid-releasing enzyme-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0016607</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S9C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030283">
        <property type="protein sequence ID" value="MCH95627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N757"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045550">
        <property type="entry name" value="AARE_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42776:SF23">
        <property type="entry name" value="ACYLAMINOACYL-PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42776">
        <property type="entry name" value="SERINE PEPTIDASE S9 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19283">
        <property type="entry name" value="APEH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acylamino-acid-releasing enzyme N-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16775" checksum="A6ACCAC43D12EE58" modified="2018-12-05" version="1" fragment="single">MKYCSNRPCALYAVRALYHESKSDEPERHSSTEELHALNLTPTISSALFPRFSPNGEFLIFLSAKSAVDSGVHNATNSLNRIDWPTDRKLYQSAKFYDIIPVVMCAEEGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSCEVLLSVNVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8B6</accession>
    <name>A0A392N8B6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lysine-specific demethylase 3B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0017009</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031313">
        <property type="protein sequence ID" value="MCH96026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8B6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032454">
        <property type="term" value="F:histone H3K9 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045109">
        <property type="entry name" value="LSDs-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549:SF11">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH96026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10753" checksum="B38D5EFA04E4FE8E" modified="2018-12-05" version="1">MEPASITAVKKLTKKHLEQDKKELHGHNQDGETNVDMLDNLSSVNASDGGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHIHCSPIEKVKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9F6</accession>
    <name>A0A392N9F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copia protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0017443</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032364">
        <property type="protein sequence ID" value="MCH96457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF524">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, PROTEIN KINASE RLK-PELLE-DLSV FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="327" mass="36875" checksum="ABC8553938480FC7" modified="2018-12-05" version="1" fragment="single">MAYILIYVDDIILITFTHALHKSIMSLVTSEFVMKELGQQSYFLGIDVSRPPSGIFLSQSTYASEIIECADMASYKPSATPIDTKQKLSTSSGTPYEDTSLYRSLAGALQYPAFTRPDISYVIQQVCLHMHAPRIEDIFALKRILRYVQGTLHFGLHLSPSPITKFISYTDADCGGCPDTRRSTSGSFVFLDDSLISWSSKRQPILSLVLVMKPNIEVLLMLSLSRVGFTIFFWSSIFTFFRPLWCIVTMLVPFISPVILCNISVPNIFEMDIHFVREKVARGQARVLQVPSRHQITDIFTKMLPRILFDDFRTSLSVREPPASTAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9H0</accession>
    <name>A0A392N9H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Oligopeptide transporter OPT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0017436</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the oligopeptide OPT transporter (TC 2.A.67.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032351">
        <property type="protein sequence ID" value="MCH96450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035673">
        <property type="term" value="F:oligopeptide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004648">
        <property type="entry name" value="Oligpept_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004813">
        <property type="entry name" value="OPT"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00728">
        <property type="entry name" value="OPT_sfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22601">
        <property type="entry name" value="ISP4 LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03169">
        <property type="entry name" value="OPT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0571">Peptide transport</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="64"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="176"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="274"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH96450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="328" mass="36527" checksum="EF6CCC7536B7042E" modified="2018-12-05" version="1" fragment="single">MSVTFAFEYGLCFAALTATISHVVLFHGEMILEMWKKTTSSLKNQLGDVHTRIMKKNYEQVPEWWFVTILILMFMMALVACEGFGKQLQLPWWGILLSLAIALVFTLPIGVIEATTNIRSGLNVITELVIGYIYPGKPLANVAFKTYGHISMVQALGFLEDLKLGHYMKIPPKSMFIVQLVGTVVASSVHFGTAWWLLTSIENICDESLLPKGSPWTCPGDDVFYSASIIWGVVGASDIPPVRSVNYITWGIVGMFFNFYVYRKFKAWWARHTYILSAGLDAGVAFMGLVLYFTLQSYGIFGPTWWGLEADHCPLAACPTAPGVYAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAI7</accession>
    <name>A0A392NAI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Inactive rhomboid protein 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033454">
        <property type="protein sequence ID" value="MCH96856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6285" checksum="51C7CD09F788FE09" modified="2018-12-05" version="1" fragment="single">MNSNEIGVAAPGTRTHTNYPAATAIYAVVSIVVFIVAMAINNCPTNNLGFERNCLAKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCB4</accession>
    <name>A0A392NCB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cullin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034325">
        <property type="protein sequence ID" value="MCH97193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="191"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23118" checksum="BA22BC9001D2948A" modified="2018-12-05" version="1">MKMNLSACIFHHLCKCIRYAQNPNKKTTQIAYPRLLSEIFHQCGVTDMIERAQAHDLLEKQRASFISASTLSNMSLIKGKSIKTPNKPLLINKNRTPSIPARMHYVFSNEPPEVIMEYAKIMKEEGVIFTGKDIIRITHEGKKQTKRKRIVKSIKIEPEDSASEPKASEPXIKAKTQVVAAEAKSSKKRKSETLKEKEGQKESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCE6</accession>
    <name>A0A392NCE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SPX domain-containing protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0018531</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035210">
        <property type="protein sequence ID" value="MCH97536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11452" checksum="68DADBAF4E4CA778" modified="2018-12-05" version="1" fragment="single">MISEPVRYFACLLFKSEENEEDGSGSNVIGDENKEKLMQVPKELAEIENMENVFIKLTLSALHTLEEIRGRSSMLVYAEILQKQEVKTKRSDEACGEKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND09</accession>
    <name>A0A392ND09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cofactor complex C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033706">
        <property type="protein sequence ID" value="MCH96938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003425">
        <property type="entry name" value="CCB3/YggT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33219:SF14">
        <property type="entry name" value="PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33219">
        <property type="entry name" value="YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02325">
        <property type="entry name" value="CCB3_YggT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="15957" checksum="A9C2AED00FC63CB1" modified="2018-12-05" version="1" fragment="single">MRCYSCYTEVGASAGATFSMLNAAATQKCLDLDVNLNSPKLNIPETLHTSTDFMTGLILADIDPATAKLAIGFLGPFLSAFGFLFIIRIVMSWYPKLPVGKFPYVLAYAPTEPLLVPTRKVIPPLAGVDVTPVVWFGLLSFLNEILV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFE3</accession>
    <name>A0A392NFE3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Hexosyltransferase</fullName>
            <ecNumber evidence="13">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0018784</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13">Golgi apparatus membrane</location>
            <topology evidence="2 13">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the glycosyltransferase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="13"/>
    <dbReference type="EMBL" id="LXQA010035929">
        <property type="protein sequence ID" value="MCH97788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFE3"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990714">
        <property type="term" value="F:hydroxyproline O-galactosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.120.200:FF:000071">
        <property type="entry name" value="Hydroxyproline O-galactosyltransferase GALT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001079">
        <property type="entry name" value="Galectin_CRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002659">
        <property type="entry name" value="Glyco_trans_31"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214">
        <property type="entry name" value="BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11214:SF286">
        <property type="entry name" value="HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00337">
        <property type="entry name" value="Gal-bind_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01762">
        <property type="entry name" value="Galactosyl_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51304">
        <property type="entry name" value="GALECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 13 15" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10 13" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="12 13" id="KW-0464">Manganese</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="6 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Galectin" evidence="14">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU363063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH97788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="246" mass="27621" checksum="A183123263F722AA" modified="2018-12-05" version="1" fragment="single">DGLVKCEKWIGGESGDDRQAVESKSEWWLKRLIGRTKKVTVDWPFPFNENKLFVLTLSAGLEGYHFNVDGRHVASFPYRTGFTLEDATGLTVKGNIDVHSIFAASLPSTHPSISPQQHLEFSARWRAPPLPEFGVELFIGILSAGNHFAERMAVRKSWMQHSLIKSSEVVARFFVALHHKIEINSELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVHTVAAGNIMKGDDDTFVRVDAVINE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJ98</accession>
    <name>A0A392NJ98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cinnamoyl-CoA reductase 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0020915</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041673">
        <property type="protein sequence ID" value="MCH99900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006694">
        <property type="term" value="P:steroid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002225">
        <property type="entry name" value="3Beta_OHSteriod_DH/Estase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050425">
        <property type="entry name" value="NAD(P)_dehydrat-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366">
        <property type="entry name" value="NAD DEPENDENT EPIMERASE/DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10366:SF776">
        <property type="entry name" value="NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01073">
        <property type="entry name" value="3Beta_HSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-beta hydroxysteroid dehydrogenase/isomerase" evidence="3">
        <location>
            <begin position="9"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH99900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16006" checksum="7152AA47409297CD" modified="2018-12-05" version="1" fragment="single">MILQVEVIEPAVKGTANVLEACLKAKVERVVFVSSGVAAVINPNFPKDKVIDESCWSDKEYCKKAKNWYCYAKTEAEEQAXNFAKRTGLDVVSICPTLVLGPILQSTLNSSSLVLIKLLKARCWTRCSNIGYDIQCALFSRFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLF0</accession>
    <name>A0A392NLF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein-tyrosine-phosphatase MKP1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039946">
        <property type="protein sequence ID" value="MCH99304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10794" checksum="0E5598A496E653E7" modified="2018-12-05" version="1" fragment="single">SDSIDYLFDSTNHVKGGGTNCELASRPGIVDSAGCQESSLLRNCVEPLGDSLSREDLNSTSLKAQLDSDRQSDFLGAVDWNRIGCDLLAQFDLPKNTVTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNB1</accession>
    <name>A0A392NNB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0021596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043642">
        <property type="protein sequence ID" value="MCI00576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2726" checksum="C30CEBCD00115F22" modified="2018-12-05" version="1" fragment="single">QAGTACAGAWSASSLPRPDMIGRVPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQ01</accession>
    <name>A0A392NQ01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022912</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047449">
        <property type="protein sequence ID" value="MCI01883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQ01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7761" checksum="2EA043FA5F944243" modified="2018-12-05" version="1" fragment="single">RLPAQMEHDKEGGKTEQAKQEYIVDIGVEETATRDQNLVNSGIRMNMLFFPRQEMKKRRRGIHCLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQM6</accession>
    <name>A0A392NQM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase fray2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022729</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046866">
        <property type="protein sequence ID" value="MCI01702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6886" checksum="E4603567998AEC26" modified="2018-12-05" version="1" fragment="single">CSLFPVLHSVLQTNILQRDTILTLMKLITAGDSAADSTNTPALIAGTEKSLPKCQNVLDDKNDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT92</accession>
    <name>A0A392NT92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dentin sialophosphoprotein-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046840">
        <property type="protein sequence ID" value="MCI01695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059024">
        <property type="entry name" value="SYNRG_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35701">
        <property type="entry name" value="OS11G0148400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35701:SF1">
        <property type="entry name" value="OS11G0148400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25999">
        <property type="entry name" value="SYNRG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Synergin gamma C-terminal" evidence="1">
        <location>
            <begin position="19"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="22346" checksum="F8D9398F9D25A520" modified="2018-12-05" version="1">MELLKDAVSTLRILKLGSGEEQSNYLTIWSKIAFVXXXXXXXXXXXXXEAVKKNVHDQLLSIPKGVQYVHALGEIYRVAEIVRVSAKLHKPWMLSGSIDRTSLFALLGECNSLWLASGLEEALSSISNHNNFDVDGISRELVQSIKYIHELDEHALQSHVISGEETMCQLSALPADCLPVEPSHMFSDDAILEIRPTGLNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUN4</accession>
    <name>A0A392NUN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0023964</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050638">
        <property type="protein sequence ID" value="MCI02930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050905">
        <property type="entry name" value="Plant_NBS-LRR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463:SF203">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33463">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="4">
        <location>
            <begin position="73"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI02930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="298" mass="33557" checksum="AE61E20F0E0A683A" modified="2018-12-05" version="1" fragment="single">MTKKTIDEISEVLAEGKFDRVSYRAAFQVTVTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTTLVKELAWQVENDGSFNAVTMATITGSSDLEKIQGQIADALDLKFKKNTNEGRARELRQRISKEKSILVILDDIWGKLDLEEVGIPFGDDHKGCKLVVTSRDLNVLNSEMGTQKEFRLEVLLEEDSWXXXXXXXXXXXXXXXXXXXXXXXXKCCSGLPLLIVTVAKALRKKHASAWKDAVNELKRFDQEGLQKKVYSTLELSYNCLESEELKLLFLFIGSFGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVJ9</accession>
    <name>A0A392NVJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BEACH domain-containing protein lvsC-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0024889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053474">
        <property type="protein sequence ID" value="MCI03848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031570">
        <property type="entry name" value="NBEA/BDCP_DUF4704"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15787">
        <property type="entry name" value="DUF4704"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4704" evidence="1">
        <location>
            <begin position="2"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF15787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19394" checksum="C513552585EAEFD5" modified="2018-12-05" version="1" fragment="single">YLTGCEDTAARIRIIRDILDLLDSNASNIEAFMEYGWNAWLTSSLKLGVLKDKNVKLPNHDNSQRDELLVVRNLFSLVLCHYLHSVKGGWQQLEETVNFLVMHSEEGGNSYRFFLRDIYEDVIQNLVDLSAAENIFISQPCRDNTLYLWKLIDEMLISEIDKELPVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NY38</accession>
    <name>A0A392NY38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052108">
        <property type="protein sequence ID" value="MCI03415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NY38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="16467" checksum="45DB899128511DBF" modified="2018-12-05" version="1" fragment="single">MKVSLEELEEGLAELKLSDEEQLSPKFCNNLDSMYLKDENKEEWTKRWGRYRKTAARSKIGVNRIDIKKPPRPNLKIKFKRIMDSSENPAKERWINIPREAKTKTEEKHWLKGGRPKEWETYYATYKEQQHPEGWND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYZ3</accession>
    <name>A0A392NYZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcription initiation factor TFIID subunit 1-a</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0025527</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055534">
        <property type="protein sequence ID" value="MCI04480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009067">
        <property type="entry name" value="TAF_II_230-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036741">
        <property type="entry name" value="TAFII-230_TBP-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09247">
        <property type="entry name" value="TBP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47055">
        <property type="entry name" value="TAF(II)230 TBP-binding fragment"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TAFII-230 TBP-binding" evidence="3">
        <location>
            <begin position="12"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI04480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5174" checksum="412980D5B1CA6787" modified="2018-12-05" version="1" fragment="single">MFDKFVLIDDEEEYEESDKGNRFLGFMFGNVDNSGDLDVDYLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0J1</accession>
    <name>A0A392P0J1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Subtilisin-like protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0025362</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054980">
        <property type="protein sequence ID" value="MCI04315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P0J1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI04315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12158" checksum="D0F6C275EEB656A8" modified="2018-12-05" version="1">MQEEIDREQGTSIEVMLPMQGQRQYKTVALNTVMELSILVVIPILEARITTYKACWPPINGSECFDADITAAFDMAIHDGVDVLSLPLEGSAAHYFDNGRAFHTVKRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P101</accession>
    <name>A0A392P101_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0025532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055547">
        <property type="protein sequence ID" value="MCI04485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P101"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="93" mass="10390" checksum="456FA6BC0ADBC0DF" modified="2018-12-05" version="1">MRTVQLVAVSLETNQVLEDWGSNSCLGWDKGCRKIALETDSIVAVTLILKGCPEFHPCASMVNLINSLRMIEWQVYHSRTEAGKNCYNGGFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCA0</accession>
    <name>A0A392PCA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Meiotic nuclear division-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0030807</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073648">
        <property type="protein sequence ID" value="MCI09718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040661">
        <property type="entry name" value="LZ3wCH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18517">
        <property type="entry name" value="LZ3wCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017480339" evidence="4">
        <location>
            <begin position="18"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Leucine zipper with capping helix" evidence="5">
        <location>
            <begin position="18"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI09718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7690" checksum="E0A9E2FAD8279DF3" modified="2018-12-05" version="1">MMVMLNIIFLMWLQNGADNIFTLKQWCSNNFPQAKEQLQNMYQEIGITDDFDYLEMAPLPSKAVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJN1</accession>
    <name>A0A392PJN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0032949</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081724">
        <property type="protein sequence ID" value="MCI11847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43796">
        <property type="entry name" value="CARBOXYNORSPERMIDINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43796:SF2">
        <property type="entry name" value="CARBOXYNORSPERMIDINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10096" checksum="082D044FA199C00A" modified="2018-12-05" version="1" fragment="single">VDLVVHAAGPFQQTEKCSVLEAAINTKTAYIDVCDDTDYSRRAKSFMSRALAANVPAITTTGIYPGVSNGDTLFLQYSYACHLIVRIICSGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQU6</accession>
    <name>A0A392PQU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chaperone protein DnaJ-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0034940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089745">
        <property type="protein sequence ID" value="MCI13820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.230.10">
        <property type="entry name" value="Heat shock protein DnaJ, cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.260.20">
        <property type="entry name" value="Urease metallochaperone UreE, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43096">
        <property type="entry name" value="DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43096:SF22">
        <property type="entry name" value="MOLECULAR CHAPERONE HSP40_DNAJ FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="DnaJ/Hsp40 cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI13820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7422" checksum="67EDC25EFEF5B7D2" modified="2018-12-05" version="1" fragment="single">YDFSLEFTDAIFGTEKEFDLFHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXK9</accession>
    <name>A0A392PXK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">C2H2 type zinc finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0037559</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100758">
        <property type="protein sequence ID" value="MCI16417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18725">
        <property type="entry name" value="PIN_LabA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35744">
        <property type="entry name" value="C2H2-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35744:SF4">
        <property type="entry name" value="OS04G0464600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="C2H2-type" evidence="2">
        <location>
            <begin position="67"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI16417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="26058" checksum="947E9FD70AC5A66C" modified="2018-12-05" version="1" fragment="single">PNSIPPYEVANKLRIAAASFGVVRYMVAYANSHTFNYVPHVVREMRKERKMLFGLEDKGVIKRNEPHICCVCGRKFYTNEKLVNHFKQLHQRENAKRVNQIESARGSRKVKLVGKYSMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDKPQAADIALQKHMVDMMDHRXVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDISSDGVLKRTADTAFSWEEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q370</accession>
    <name>A0A392Q370_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0039916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111684">
        <property type="protein sequence ID" value="MCI18761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="163" mass="18152" checksum="1F6798F26D3BD2F4" modified="2018-12-05" version="1" fragment="single">MSIWQPEDFYVPEDISAEFSALSRWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSATLDKAKCKSLPLAFYLEELPGGSANANIPLLIWADMANFEVRRVLVDPGSSVDIMYAHTFETIQLNERNLTPYVGSDLQGFNGTTTKPWGYVDLIVTVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR29</accession>
    <name>A0A392UR29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099764</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010951875">
        <property type="protein sequence ID" value="MCI78494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2967" checksum="B5C4DC3FC4280CDD" modified="2018-12-05" version="1" fragment="single">MGTPFEGEYRYRIRIGYWYVPDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUR2</accession>
    <name>A0A392UUR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0099902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010955318">
        <property type="protein sequence ID" value="MCI78631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7783" checksum="8832EFB83E50450F" modified="2018-12-05" version="1" fragment="single">WSGAADLLQRGSGVLPEAMVVRRRFAGIASSVVIAADSGGASIFFLFPSLISIGCFFYSFLSGFRSVLDFGDGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX56</accession>
    <name>A0A392UX56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0101887</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999648">
        <property type="protein sequence ID" value="MCI80616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6958" checksum="67B65254BA321E56" modified="2018-12-05" version="1" fragment="single">MWPDWGYEKFVGYSSCSVTRQTRQHGWVPLQKFQHECLAAPPCLNLSPPHRRLFPPSTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LX82</accession>
    <name>A0A392LX82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000194">
        <property type="protein sequence ID" value="MCH79559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LX82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4121" checksum="E15B9634EDD368CC" modified="2018-12-05" version="1" fragment="single">GDPCFCMTMTGLLPPSDDGVLPEAVGREDGEDFVEYAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LXH2</accession>
    <name>A0A392LXH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000371</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000230">
        <property type="protein sequence ID" value="MCH79618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LXH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="28919" checksum="D488874846FA1870" modified="2018-12-05" version="1" fragment="single">MANEIVDDARRHQKELVLFKVDIEKAYDSVDWGYLDDVMRQMAFPVLWRKWIKECVGTATASVLVNGSPTDEFSLERGLRQGDPLSPFLFLLAAEGLNVMMRGLVQSKLFTRYSIGTTSPIDVSHLQFADDTLLLGVKCWANVRALRGVLVLFEAVSGLRVNFHNSMLVEVNAAESWLSEAAVVLGCSVDKVPFLYLGLPIGGDPRRVSFWEPVVNRIRSRLTAWKSRFLSFGGRLVLLKYVLTSLPVYALSFFKAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LY34</accession>
    <name>A0A392LY34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Meiotic recombination protein DMC1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000631</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000450">
        <property type="protein sequence ID" value="MCH79870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LY34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="Rad51 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="225"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="441" mass="49434" checksum="A4F690BE81359AD3" modified="2018-12-05" version="1" fragment="single">MSANQVNHNGTVNQDVEPVNNESQEQRNVEEFDGDESIVKLISQGIDAGDVKKLQDAGIVTCLDFILMKSKKSLAKIEGLSEEKVDKMLEAAGKLVDSIYVFLKEQDELKNQETVESERGALLGIIDLIQGNPEMMRPHTYAIVERLMNLINDQDEVVRNLSYEIFHFVISNDLKENSVALSCVFAAVPRQKGQFRFQFISKLSKAGVVFCFFGLLLSLLQRGFIVFSGGGAGLVCGVLLGVELVFFAVLDDQQMLIRISMPSILEALAHSEIKVRLTAFKILELLLNLNPLFLPSELDQIIENYGNLLLVDDLFNNKKTLSDTLIALVKCLSLLPWNKKGTDDCLVSYYGFSHTIESIKYLVSVLVYRFGQLLNESASNGWFTKDAFELMLSFLKCINLCVLSFKNSKCQDSLNGEANKKVWDANVDQLFHNFPLRSSDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYK3</accession>
    <name>A0A392LYK3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0000397</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000253">
        <property type="protein sequence ID" value="MCH79644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="63"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="359"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="396"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="492"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="372"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="423"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="501"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="515"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="533"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH79644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="853" mass="96551" checksum="17B1783E97E43ABD" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYT3</accession>
    <name>A0A392LYT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0000902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000727">
        <property type="protein sequence ID" value="MCH80140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4117" checksum="6D9F45AA67919DC6" modified="2018-12-05" version="1">MGLWSELYLTKCIDLTIVAQVPDITIAQSISKHSDEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYX7</accession>
    <name>A0A392LYX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000950</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000776">
        <property type="protein sequence ID" value="MCH80186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="260"/>
            <end position="537"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="857" mass="98988" checksum="2DD512DB719B6B7F" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZ39</accession>
    <name>A0A392LZ39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000859">
        <property type="protein sequence ID" value="MCH80273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZ39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF79">
        <property type="entry name" value="OS06G0205337 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="515" mass="59708" checksum="1F63F7970B8E1E20" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M042</accession>
    <name>A0A392M042_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NYNRIN-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0000696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000512">
        <property type="protein sequence ID" value="MCH79934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH79934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28374" checksum="C56E44595BB3AE9B" modified="2018-12-05" version="1" fragment="single">ILISDGGKHFCNKHLENLLAKYNVKHKVATPYHPQTSGQVEVSNRQLKQILEKTVSSSRKDWSLKLEEALWAYRTAYKTHLGFSPFQLVYGXXXXXXXXXXXKAYWAVKFLNMDATLAGEKRLLKLNELEEWRERAYDNAVLYKARTKRYHDKGLVPKVFQPGQMVLLFNSRLRLFPGKLKSRWSGPFVIKEVFSHGAIEIYKPGDEANTFKVNGQRLKFYKGGDVMRHKDKLDSSSKMRREGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0H3</accession>
    <name>A0A392M0H3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001517">
        <property type="protein sequence ID" value="MCH80812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0H3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="355"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="443" mass="50368" checksum="DE5179D9A69119B5" modified="2018-12-05" version="1" fragment="single">MSGCTMKILSWNVRGLGRLEKKKEAKKLINEKHPFIVCIQETKLGFCDDFLCVLLWGNLPHGYSFRPSAGASGGLLVLWDAAEVEVRSTVSLPQAQLRGLSGHCPLSLSVDEENWGPRPLQMLKCWQDIPGYKQFVISKWQSMHLDGWGGFVLKEKLKLLKTALKEWHITHTKNVPGRIDSLKVRLAALDCKGEAEGLSEDETAELYAVTSDIHSLTRMNTSIYWQQARLMWLREGDVNLKYFQSILTSRRRRNAWSSIMVDGLRVEGVQPVRQAVFSHFSSHFKAVRVDRPRVDDFQFSTLSPSEGGSLVKPFSVDEVKAAVWDCDSYKSLGPDGINFGFLKEFWPELQGDIMSLYKILSKVLVNRLRQVVGSVVSEVQSAFVKERQILDGTLVANEVVDDACKQQKELVLFKVDFEKAYDSVDWGYLDDVMRRMAFPVLWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0Y9</accession>
    <name>A0A392M0Y9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0001701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001650">
        <property type="protein sequence ID" value="MCH80925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0Y9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH80925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3728" checksum="6CF8D568CBCD9361" modified="2018-12-05" version="1" fragment="single">GNLTLTYPLGDGKVGVVEADREMAKKCLEMCPCSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M206</accession>
    <name>A0A392M206_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002138">
        <property type="protein sequence ID" value="MCH81311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M206"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH81311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16885" checksum="337F23C1614DC0E3" modified="2018-12-05" version="1" fragment="single">VTDVVGGVHVLNKDSDVCAELEEEEEEVEEEEEEEVETVEVEEEEEEEEEEEEEEEEQVTVVDDKDEFIYKGLELKKNRRGCQCQTSVASHSVDTSAKEVNNSALRLVLITKEVIDKQDNIEPDRNSKGGSRGKRSNKDGRVGRTRNSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M3Z2</accession>
    <name>A0A392M3Z2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAR1-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0002909</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003222">
        <property type="protein sequence ID" value="MCH82112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M3Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15247" checksum="790BFFABC06D09BD" modified="2018-12-05" version="1">MVIMFDAKSSKEPKPKVDVKSNKQPKVDAKRIKESKVDAKPVKEQPKVDVMSIKEQPKVDTPKVDFRVHFTTERKFDSHAEMISWVRDEAYKLGFVVVIAKFDSGWNNRKPFVTLGCQRGSEYRKYINKEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4B4</accession>
    <name>A0A392M4B4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0002008</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002026">
        <property type="protein sequence ID" value="MCH81224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02120">
        <property type="entry name" value="PA_subtilisin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04852">
        <property type="entry name" value="Peptidases_S8_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.80:FF:000003">
        <property type="entry name" value="Subtilisin-like protease SBT1.9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.80">
        <property type="entry name" value="Peptidase S8 propeptide/proteinase inhibitor I9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034197">
        <property type="entry name" value="Peptidases_S8_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010259">
        <property type="entry name" value="S8pro/Inhibitor_I9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037045">
        <property type="entry name" value="S8pro/Inhibitor_I9_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041469">
        <property type="entry name" value="Subtilisin-like_FN3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17766">
        <property type="entry name" value="fn3_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05922">
        <property type="entry name" value="Inhibitor_I9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 15" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="7" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5 11" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017408650" evidence="11">
        <location>
            <begin position="20"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="domain" description="Inhibitor I9" evidence="13">
        <location>
            <begin position="26"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S8/S53" evidence="12">
        <location>
            <begin position="170"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="domain" description="Subtilisin-like protease fibronectin type-III" evidence="14">
        <location>
            <begin position="651"/>
            <end position="750"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="195"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF05922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF17766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH81224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="753" mass="80417" checksum="F8776DF343E0E6A0" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4N8</accession>
    <name>A0A392M4N8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003098</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003474">
        <property type="protein sequence ID" value="MCH82296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4N8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF52">
        <property type="entry name" value="OS04G0603800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="87"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="308" mass="35461" checksum="7D9A30937D95909A" modified="2018-12-05" version="1">MSSAYHSESDGQIEVINRCLEGYLRCFAADHPKTWSNWISWAEYWYNTTYHVSIGKTPFEVVYGRQAPTLVRFLSNETKVAAVALELSERDEALNQLKLHLKKAQEQMVVYANKKRRDLSFEIGEWVFLKLRPHRQQTVVKRINQKLAARFYGPFKIIAKVGEVAYKLQLPDTSKIHPVFHVSLLKKAVGDYHIQGDLPKDLEVTDEGEIYPEVVMGARVTLKEGVAVQQSLIKWKDRSLDDVTWEDNEVLCGQFPDFSLEDKAVFMEEGVDRIMDQSVGLGVQPKPRIWRVYKRMKGKGIGKEDVDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4R6</accession>
    <name>A0A392M4R6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Eukaryotic translation initiation factor 3 subunit G-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0002160</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002223">
        <property type="protein sequence ID" value="MCH81374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4R6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052462">
        <property type="entry name" value="SLIRP/GR-RBP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48027">
        <property type="entry name" value="HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="123"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH81374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="23457" checksum="4C47585C724E8D5E" modified="2018-12-05" version="1">MSSSIQPDESEIEKVHGKRSKFGEVESQCQPYNPFWDDEEEYDYSKEPGFVMPDLSVRILFLYPFLLDGSYNGGAYSVCDHRCDGHHAPRRDVDESLSLIPGMVIPPCLFDFAKEMIAKSDDKTVLATYLSDELEEDSHLLQLFKSKVDVKRAKLAIDQETGFSGNFGFVTFATKEDAQKAIEEFDGHVHGWDKRTMGVDWATPRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M517</accession>
    <name>A0A392M517_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0003290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003746">
        <property type="protein sequence ID" value="MCH82482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M517"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="252"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH82482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="358" mass="40629" checksum="6330CFE8AB6C2C9D" modified="2018-12-05" version="1" fragment="single">MLVGVNIPESWLAEAAAVLGCVDPVLSHIKAKLSGWKSRFLSYGGRLILLKSVMTSLSVYALSFFKAPSGKEYRGLGVRQLQEFNVALLGKWCWRLLVDRGGLWYRVLVARYGEVAGRLVAGDRRGSQWWREVAKIRDGVNGNEGGWFAEGVARRVGSGEDTFFWMDPWLGNVPLSALYSRLFELSEHKTSTVAAMYGIGWEEGGAAWQWRQPLRAWELEKLAECRNLLVDIVLEPNIAYLWRWRYDHDGGYNVRSAYVRLTARDHYDVDATSTLLWHQQVPVKVSILAWRLLRNRLPIKDNLAARNIIPVDSQLCASGCGGEMVCFLMRWWVMNDDTGCGMVFTMKVVRNGVDDDDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6T5</accession>
    <name>A0A392M6T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003762</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004431">
        <property type="protein sequence ID" value="MCH82949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025724">
        <property type="entry name" value="GAG-pre-integrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13976">
        <property type="entry name" value="gag_pre-integrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="3">
        <location>
            <begin position="143"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="GAG-pre-integrase" evidence="2">
        <location>
            <begin position="302"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="406" mass="44788" checksum="FE36217F00541D2F" modified="2018-12-05" version="1" fragment="single">VLHYAWSSSNRGGRGGRNGGRGGRSRGGRSNVQCQVCHKWNHDASICFHRFKRDYVPTIPLEDPQVSNPNPPWPQPHYRPTSRPPQSNYPYPPPWNPYTWPKPQVPYPMAANLYTNPYAPMMSPQLQPQAFVASSSSTPSFNWYSDSGASHHVTSSSQNIHQLSPFEGPDQVYLGNGQGLSISHFGSSSFSSPLKPNVQLILHNLLLVPTITKNLLSVSQFAKDNSVYFEFHSDICLVKSQGTNEVLLQGTVGPDGLYQFPNMLSPSVNKQSMSAFPSFNSCNLSIPSMNVAIATSQFVSVPSCNTVDAVSCNFASWHARLGHPSAEIQRIVLSNCNIPFTNKSISDFCSSCCMGKAHKLPSHSSTTVYTAPLELTVTDLWGLAPMQSSNGFYYYMTFVDAFTRFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7E7</accession>
    <name>A0A392M7E7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005106">
        <property type="protein sequence ID" value="MCH83390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="443"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="137"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="629"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="629" mass="71498" checksum="589C886EA6830407" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7X3</accession>
    <name>A0A392M7X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Inositol transporter 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0004033</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004822">
        <property type="protein sequence ID" value="MCH83215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015798">
        <property type="term" value="P:myo-inositol transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015791">
        <property type="term" value="P:polyol transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd17360">
        <property type="entry name" value="MFS_HMIT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1250.20:FF:000073">
        <property type="entry name" value="MFS myo-inositol transporter, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050814">
        <property type="entry name" value="Myo-inositol_Transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003663">
        <property type="entry name" value="Sugar/inositol_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00879">
        <property type="entry name" value="SP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48020">
        <property type="entry name" value="PROTON MYO-INOSITOL COTRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48020:SF46">
        <property type="entry name" value="SUGAR PORTER (SP) FAMILY MFS TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00171">
        <property type="entry name" value="SUGRTRNSPORT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="27"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="309"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="375"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="442"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="9">
        <location>
            <begin position="31"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH83215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="495" mass="53389" checksum="6800EF1BF8D24E30" modified="2018-12-05" version="1">MPVNMAGSSGYLEMHPERKISMFQNPYILGTTFAAGIGGLLFGYDTGVISGALLYIKEDFDMVKKSSFIQELIVGMALLGAIFGAAIGGVINDALGRKIATITADINFIAGSLIMAAAPNPYVIIAGRLLVGFGVGMASVTAPVYIAEASPTEIRGGLVSANNLMITGGQFLSFVVNYGLTRVPGTWRWMLGIAGTPAVVQLILMTILPESPRWLYMKSRKEEATRVLSKIYESPRLEDEIQLLEDNLEKERKSMAKVQYSDVFRQKEIRMAFICGGGLQAFQQFAGISIVMYYSPTIIQMAGFKSNQAALFLSLIVSGMNAAGSILGIYLIDQLGRKKLALGSLAGVIGALIVLSVSCYIIGQGNTNKLYGGLAVFGLALYIAFFAPGMGPVPWTVNSEIYPEEYRGMCGGMSATVNWVCSVIMSTSFLSVVDAIGLGQSFMVLLGVSIVALGFIIFYMPETKGLTFEEVDLLWKERAYGKNYNKESHAEKASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7Z8</accession>
    <name>A0A392M7Z8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Callose synthase 9-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003721</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004364">
        <property type="protein sequence ID" value="MCH82908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000148">
        <property type="term" value="C:1,3-beta-D-glucan synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003843">
        <property type="term" value="F:1,3-beta-D-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006075">
        <property type="term" value="P:(1-&gt;3)-beta-D-glucan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003440">
        <property type="entry name" value="Glyco_trans_48_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741:SF47">
        <property type="entry name" value="CALLOSE SYNTHASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741">
        <property type="entry name" value="LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02364">
        <property type="entry name" value="Glucan_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase 48" evidence="2">
        <location>
            <begin position="3"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="190" mass="21557" checksum="575D786B7E909625" modified="2018-12-05" version="1" fragment="single">LTVLTMYAFLYGKTYLALSGVGETIEERAKITTNIALSAALSTQFLFQIGIFTSVPMVLGFILEQGFLRAVVNFVTMQFQLCTVFLAFSLGTRTHYFGRTILHGVARYQATGRGFLVCHIKFSENYRLYSRSHFVKGFEVVILLIVSLAYGYNECGATSYILLSISSWFMALSWLFAPYLFNPYGFEWQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M840</accession>
    <name>A0A392M840_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Scarecrow-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004468</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005520">
        <property type="protein sequence ID" value="MCH83642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="VHIID" evidence="5">
        <location>
            <begin position="109"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Leucine repeat II (LRII)" evidence="5">
        <location>
            <begin position="184"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="SAW" evidence="5">
        <location>
            <begin position="382"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="VHIID" evidence="5">
        <location>
            <begin position="140"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="LXXLL motif" evidence="5">
        <location>
            <begin position="233"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="460" mass="51693" checksum="64C274367718F080" modified="2018-12-05" version="1">MMSLSPNIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALAVRILKTWPGLHRALNSTRIIMLSEEIMVQKFFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTXXXXXXSNGLHLQKVMLMNQSASLGDLLEKDMVNGYTPSPDSTSSSSPASSTASLNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERFKIEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYKMREENGCVAICWQDRSLFSTTAWRARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M959</accession>
    <name>A0A392M959_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0004499</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005574">
        <property type="protein sequence ID" value="MCH83673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M959"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="9"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH83673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="259" mass="29480" checksum="F1C8D2FD7D5DAB7F" modified="2018-12-05" version="1">MTNIIADMLRDGLIQPSNSPYSSPVLLVKKKDGSWRFCVDYRALNAITIKDRFPIPTIDELIEELHGSAVFTKIDLRSGYHQIRLAPEDIPKTGFRTLDGHYEFLVMPFGLTNAPSTFQAAMNDLFRQFLRKFALVFFDDILVYSPDWQAHLVHLQQVLQALSQNQFFVKLSKCQFGVPTVEYLGHIISKEGVSADPSKIHAMISWPVPKNMTALRAFLGLTGFYRRFVLNYAAIATQTFQCLLYLISTFHSKSPLMPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9P7</accession>
    <name>A0A392M9P7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005818">
        <property type="protein sequence ID" value="MCH83825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9P7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02947">
        <property type="entry name" value="TRX_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="140" mass="15860" checksum="A09F15C50027902C" modified="2018-12-05" version="1" fragment="single">TAAVGAAGQYESPHVKRFHSSESWQLHFKELKESRHLDVAKELNVQHMPTFVLLKKGKEVDKITKLAFVCYTQLLSGGVRKFVLSAILAVKKWKSKGSNGEEKDYVPEKQERRWLRWLTTVKTTVSGSWPGSKALIPLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9S1</accession>
    <name>A0A392M9S1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aspartic peptidase DDI1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006485">
        <property type="protein sequence ID" value="MCH84230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9S1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF39">
        <property type="entry name" value="TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR CCHC(ZN) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="196" mass="21843" checksum="34E1DD5BD25E114B" modified="2018-12-05" version="1" fragment="single">PLYAKFLKELLTKKRKPLDDEMVSMTEECSALIQRKLPQKRKDPGSFTIPCSIGNLAIGKTLCDLGASINLMPLSMMKKIPGAIAKPTKMSLSLADRSIVHPEVLDMEEDGNWEPLLLGRPFLATSRALIDVELGELMLRTDDQKIVFNVFETMKCYDGDPHDLQDQMGDGLIKDECNMDVMKSPLPQGGIPFHNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9X6</accession>
    <name>A0A392M9X6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Isochorismate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004902</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006216">
        <property type="protein sequence ID" value="MCH84071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9X6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009536">
        <property type="term" value="C:plastid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008909">
        <property type="term" value="F:isochorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042372">
        <property type="term" value="P:phylloquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="entry name" value="Anthranilate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044250">
        <property type="entry name" value="MenF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47253">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47253:SF4">
        <property type="entry name" value="ISOCHORISMATE SYNTHASE 2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="ADC synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="331" mass="37180" checksum="29C8EC94DBF06853" modified="2018-12-05" version="1">MNGCKEGENKRKETEPVGTIETRTLSPVTSTAMAMYSLKMAISELKEGSPFCTSSGIVRVEVPIVERVEAIDWLHSQNHLLLPRCYFSGREHKSVPGNLVSIAGVGSAVFFSQPQPFSHFDWMSIRRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTITIAWDNALSWSWENAINALQETLCKVSSSIVKFPKQAPPTLILSSHNIPSKVDWNVAVNRALQMIERNNSSLSKVVLARSTRVVPTANIDPLTWLACLKVEGGNAYQFFLQPPNAPAFIGNTVRFSQRRRHNWPNSVIKSCVFCVYYFKIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA92</accession>
    <name>A0A392MA92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006746">
        <property type="protein sequence ID" value="MCH84392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MA92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14903" checksum="0BB1C7022BFF5092" modified="2018-12-05" version="1">MTVKEGKSKEEAARTLDAGRNLRKLRKLKRWKLEELEKDSKNPSFPLFIEDRQRTHLHGLKQAFPHLSRRFNPKVLIEKIQRSRSNQRANERAQGSEVVCPFRSHPSVRVNLAESKKDYLEKVAKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MA99</accession>
    <name>A0A392MA99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005259</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006796">
        <property type="protein sequence ID" value="MCH84427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="unsure residue" description="D or N" evidence="1">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="290" mass="34409" checksum="1B1C2C024491D93D" modified="2018-12-05" version="1">MGKQVYKSWWKECFAQCGVELSQYFMSFLKMPAKVEKMMVCIHREFLWGDVNGGKRISWIKWNMVCQKKKNGGLGVRDVRIMNVSFLLKWRWRLLQGDDMPLLKQVLVAKCGDWILHIVEWGNETLPYYASRWWKDLSELEMCVESKNWFSEALVHKLGNGYTTLFWKDMRKGDRPLCANFPRLFLLSLQKNASVRECGTFDEELWIWDFRWRRRLFQWDEDQVVQLLMSLEELRLSSVGDSWSWNPDPEXSFSXKXTYGVLANELLGVAPLPSFEAEFFHKIWKSLPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MAJ7</accession>
    <name>A0A392MAJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dicer-like protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005822">
        <property type="protein sequence ID" value="MCH83828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MAJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030422">
        <property type="term" value="P:siRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00593">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="entry name" value="Ribonuclease III domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14950:SF15">
        <property type="entry name" value="DICER-LIKE PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14950">
        <property type="entry name" value="DICER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00636">
        <property type="entry name" value="Ribonuclease_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00535">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="RNase III domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00517">
        <property type="entry name" value="RNASE_3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50142">
        <property type="entry name" value="RNASE_3_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase III" evidence="2">
        <location>
            <begin position="10"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="RNase III" evidence="2">
        <location>
            <begin position="222"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="348" mass="38976" checksum="36EAE384C96FE8C4" modified="2018-12-05" version="1" fragment="single">MHRLGNLLVAIELKHQLSSSFPEATEISAHRFLQALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLLHDSFHEGDLTSKRSNVVNNSNLLKLAIRRNLQVYIRDQAFDPLRFYALGRPCTTVCTKENEDNIHLCLTSVEGKSSASTTEIRCNKNHHWLHRKTIADVVEALVGAFIVDSGFKAAIAFLAWIGIEVNFEASQLVNICTASVGYFPLAAEVDIPSLEGKLGHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRALSVNNKAFACVAVERCFDEYLLSDSRDLSKAVKRYVDYIRRPVSDSGNDGGPKSPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB55</accession>
    <name>A0A392MB55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005353</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006956">
        <property type="protein sequence ID" value="MCH84521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10594" checksum="79073519653E57E5" modified="2018-12-05" version="1">MCPNSNRFGGKSLLGWFPCRRGLFCRIGFLDRCFRVVCLRLLWALAVLVTGLLARNSLQPAVIRHRGCMYANRSMLAVGLFVVLTCPSFGGLLTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MCG9</accession>
    <name>A0A392MCG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acyl-CoA N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0005300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006860">
        <property type="protein sequence ID" value="MCH84468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MCG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007434">
        <property type="entry name" value="FemAB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47017">
        <property type="entry name" value="ACYL-COA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47017:SF1">
        <property type="entry name" value="ACYL-COA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04339">
        <property type="entry name" value="FemAB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH84468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8609" checksum="9CD8E194427C1D35" modified="2018-12-05" version="1" fragment="single">AIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEEFRKVIEDFLVRESSQVKVVMKLLRDSGPFKEGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD37</accession>
    <name>A0A392MD37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008513">
        <property type="protein sequence ID" value="MCH85437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008581">
        <property type="entry name" value="DUF863_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33167">
        <property type="entry name" value="TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33167:SF4">
        <property type="entry name" value="TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05904">
        <property type="entry name" value="DUF863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="242"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="440"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="518" mass="56730" checksum="DCB48D6EF6D116B5" modified="2018-12-05" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDR9</accession>
    <name>A0A392MDR9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006109</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008181">
        <property type="protein sequence ID" value="MCH85265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="2">
        <location>
            <begin position="426"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="101"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="501" mass="56695" checksum="6C6CEA181114EB86" modified="2018-12-05" version="1" fragment="single">MDFGPSAYECPRAALFKLTQTGTVADYYLEFNALANRVYGVSTEAFLDCFLSGLQIDMRRDVLALSPANLPKAFALAKLFEEKYTAQTKPKFTSPYKSPSTQNNYQTKNYTNTPRSDPNPTQQPQKTQLPPLLPTPNQKPMAIKNISPAEMQIRREKGLCYFCDERFSHTHRCPNRRMMMLQLTDDEAEPVEPDPPEIEEQRETGETVQHHLSLNAMKGNTGMGIIKFTGTIGNIEVQVLVDGGSSDTYLQPRIAQFLKVPIEPTPSFQVLVGNGQSLTVEVAGADLILGSSWLATLGPHIADYAALTLKFYQNGQFITLKGEKQAEPQHSQLHQLRRMQHTKAIAECFTIQMVMPTVFETPTGLPPPRSHDHEIPLQAGTMPVKVKPYRYLHSQKEQIEKMVHEMLEQGIIKPSNSPFSSPIILVKKKDGSWRFCTDYRALNNVTIKDSFPMPTVDELLDELHGAQYFLKLDLRSGYHQILIKPEDRYKTAFRTHHGHYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ME56</accession>
    <name>A0A392ME56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Synaptotagmin-4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006648</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009157">
        <property type="protein sequence ID" value="MCH85797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00030">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47264">
        <property type="entry name" value="OS01G0128800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47264:SF3">
        <property type="entry name" value="SYNAPTOTAGMIN-5 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="71"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26493" checksum="19B22A19070F04D2" modified="2018-12-05" version="1" fragment="single">VIQKTKTSHTPNPVWNQTLEFDEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLQIEAVKADDQEGSMGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKXTKCFIDEDSASLCRFWSLITLLNXXXXXXXXXXQVIYKTLNPQWNQTLEFPDDGSPLILYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGEIFLNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEC8</accession>
    <name>A0A392MEC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein FAR1-RELATED SEQUENCE 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0006311</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008568">
        <property type="protein sequence ID" value="MCH85465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004330">
        <property type="entry name" value="FAR1_DNA_bnd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46328">
        <property type="entry name" value="FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46328:SF33">
        <property type="entry name" value="FAR1 DNA-BINDING DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03101">
        <property type="entry name" value="FAR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAR1" evidence="2">
        <location>
            <begin position="190"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH85465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="285" mass="33147" checksum="12B031F5809A3CF9" modified="2018-12-05" version="1" fragment="single">MPWRDSDHHWYDGMPRWGIEEALLESWLIFSERVRREMREVALVEMERVGLQNGCNNSVKKKKMKMVMKATSCSWSAVSTLSFINISFSRHPNCEIKNRFLCCARVVLRITMETYDESVDADSIHSSERDSWDDELDDDGSYSVSSADKSSTDGNNDVDEVGGDNKVRFDTITAEEIRCMEFATVSEAYDFYYRYGKYNGFAVRKSDSRVTGSGDNKVIKMKQFVCNRHGVREKRHLVRTDRKLEHRRLTRTQCGARLRVNYKAEKDRYVVTAFEETHNHELTPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFB4</accession>
    <name>A0A392MFB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Fimbrin-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0006844</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Interacts with F-actin.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009534">
        <property type="protein sequence ID" value="MCH85991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005884">
        <property type="term" value="C:actin filament"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032432">
        <property type="term" value="C:actin filament bundle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051017">
        <property type="term" value="P:actin filament bundle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051639">
        <property type="term" value="P:actin filament network formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.418.10:FF:000041">
        <property type="entry name" value="Fimbrin-2 isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.418.10">
        <property type="entry name" value="Calponin-like domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001715">
        <property type="entry name" value="CH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036872">
        <property type="entry name" value="CH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039959">
        <property type="entry name" value="Fimbrin/Plastin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19961:SF60">
        <property type="entry name" value="ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19961">
        <property type="entry name" value="FIMBRIN/PLASTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00307">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00033">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47576">
        <property type="entry name" value="Calponin-homology domain, CH-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50021">
        <property type="entry name" value="CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Calponin-homology (CH)" evidence="4">
        <location>
            <begin position="56"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="18060" checksum="344451E14CA6E1DC" modified="2018-12-05" version="1" fragment="single">VNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVDDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MFY6</accession>
    <name>A0A392MFY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Flavonol synthase/flavanone 3-hydroxylase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0007075</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009955">
        <property type="protein sequence ID" value="MCH86221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MFY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050231">
        <property type="entry name" value="Iron_ascorbate_oxido_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47990">
        <property type="entry name" value="2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Non-haem dioxygenase N-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10318" checksum="4897D5B191DDE3D3" modified="2018-12-05" version="1" fragment="single">MFQIVNHEIPNDVIRKLQSVGKEFFELPQEEKEVYAEPVIGSDISSEGYGTKHQKELSGKRGWVDHFFHIIWPPSSVNYSVWPTKPPSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG78</accession>
    <name>A0A392MG78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">INO80 complex subunit C-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009637">
        <property type="protein sequence ID" value="MCH86049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4028" checksum="79A5DA01827F2BA8" modified="2018-12-05" version="1" fragment="single">VNIESPPSMHPCKRICDITGYERLLDLGILRLVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGB8</accession>
    <name>A0A392MGB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative zinc-finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0006979</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009770">
        <property type="protein sequence ID" value="MCH86125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039278">
        <property type="entry name" value="Red1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563:SF3">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12460" checksum="A71D3E4F8A7FB73F" modified="2018-12-05" version="1" fragment="single">SQDRLPLHQQNCNGVTKVTKYHKATILPTYHVSLDVLKADQFAYKPIAAHRIAQYWQQHFSITLGSLNLLQNGSPADGPLSHGGDERIEVRGAWSKQLSFQWRNGVGVCCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHM6</accession>
    <name>A0A392MHM6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">uridine/cytidine kinase</fullName>
            <ecNumber evidence="2">2.7.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0007866</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uridine: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.48" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010011335">
        <property type="protein sequence ID" value="MCH87002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHM6"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004849">
        <property type="term" value="F:uridine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02023">
        <property type="entry name" value="UMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000764">
        <property type="entry name" value="Uridine_kinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10285">
        <property type="entry name" value="URIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribulokinase/uridine kinase" evidence="9">
        <location>
            <begin position="5"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Phosphoribulokinase/uridine kinase" evidence="9">
        <location>
            <begin position="96"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH87002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24375" checksum="7A187B5ED2EAAB6A" modified="2018-12-05" version="1">MFLISSEAFDTERLVSVLDKLKHSQAVDIPKYDFKGYKNNVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTGASDAIFSSPLPLLFPCADADVRLARRIKRDTADNARNIEAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHIRGMHTLIRDSQTKKHDFVFYADRLIRLVVEHGLGHLPFTEKQVVTPTGKTPPPNDDFLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MHX7</accession>
    <name>A0A392MHX7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]</fullName>
            <ecNumber evidence="3">1.3.1.124</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0007183</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a (2E,4E)-dienoyl-CoA + NADPH + H(+) = a 4,5-saturated-(3E)-enoyl-CoA + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:45912"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:85101"/>
            <dbReference type="ChEBI" id="CHEBI:85493"/>
            <dbReference type="EC" id="1.3.1.124"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a (2E,4Z)-dienoyl-CoA + NADPH + H(+) = a 4,5-saturated-(3E)-enoyl-CoA + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:61892"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:85099"/>
            <dbReference type="ChEBI" id="CHEBI:85493"/>
            <dbReference type="EC" id="1.3.1.124"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.124" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010010149">
        <property type="protein sequence ID" value="MCH86328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MHX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008670">
        <property type="term" value="F:2,4-dienoyl-CoA reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009062">
        <property type="term" value="P:fatty acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045017">
        <property type="entry name" value="DECR2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43296">
        <property type="entry name" value="PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43296:SF2">
        <property type="entry name" value="PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE [(3E)-ENOYL-COA-PRODUCING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13561">
        <property type="entry name" value="adh_short_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00026117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH86328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8428" checksum="CEE3CFA28B06F9D0" modified="2018-12-05" version="1" fragment="single">MCHEALKYLKKGGPGRSTSSGGAIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGADYDIRVNGIAPGPISGTPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIL4</accession>
    <name>A0A392MIL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008224</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012040">
        <property type="protein sequence ID" value="MCH87356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MIL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="95"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="283" mass="32063" checksum="8B2C520244143F26" modified="2018-12-05" version="1" fragment="single">PNQPNLNSNDDIDPSLLQPINVIHPPQLSDLPNIDSDTDIDTVSERVNLATEIHKNKSNELCSLLNQLHETQTQSQQSSPLQILEQHLEGELPQNHEQTTKPNPEQQQPTSEAEKIQENLMTKFTSLSSEPTTSGPSFSHISEAPPVTNPELAIICNNILNKMKSLHQLRYSFTEPYLYVGAWETLRNDINDDLNKIQNGDINELMEFQKNTKEWKDYVENPAFEAFKAEVKDELSAQKMNLQELAKNQKDMSLKQEAVSAKQEEISADLKAILSILSQNRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MIT7</accession>
    <name>A0A392MIT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein phosphatase 6 regulatory subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011844">
        <property type="protein sequence ID" value="MCH87261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24177:SF470">
        <property type="entry name" value="ANKYRIN REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24177">
        <property type="entry name" value="CASKIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="19186" checksum="585747155F615E4B" modified="2018-12-05" version="1">MNELIQRASLYKYDFTGPSPHVEEHGDDEIVKINSKTENVAIEKXRTVSPILIAAKMGVTEMIEKILDMYPVAIHDVDNQNKNVVLLAIENRQPHVYSLLNKRSVIKETAFRQVDIHGNSALHLAATYRRFKPWRVPGAAMQMQWEYKWYKVQFYRTVITVQFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJ89</accession>
    <name>A0A392MJ89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Folylpolyglutamate synthase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0008010</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010011613">
        <property type="protein sequence ID" value="MCH87145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJ89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="entry name" value="Mur-like, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136:SF10">
        <property type="entry name" value="FOLYLPOLYGLUTAMATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="FOLYLPOLYGLUTAMATE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="MurD-like peptide ligases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01012">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur ligase central" evidence="5">
        <location>
            <begin position="27"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH87145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13833" checksum="E4A8DB907A80F4AD" modified="2018-12-05" version="1" fragment="single">YWIGGAQEKTDDNIPMPTFFHFLALLAFKIFAEEQVDVCIMEVGLGGKYDATNVVQTPIVCGITSLGYDHMEILGNTLGEIAGEKAGIFKHRIPAFTVPQPDEAMHVLKEKASQLNVSTFYVKVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJC6</accession>
    <name>A0A392MJC6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012480">
        <property type="protein sequence ID" value="MCH87577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="223"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="348"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="139"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="372"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="427" mass="48831" checksum="B306F653E856787D" modified="2018-12-05" version="1">MDEKPLSSDEDGEDVQILTECQLEKRPKMTPEKMVGRAQPPAPLTREDITDLLATLRSTNETLQQQGLRISALEESIRSKRSGSRSPRRISPRSKTTPPRRQDTHNRRPALEWLQQPNKKRDRTPPRQDRGASLSRNHGNHEHRIPTPPHHDNSPPQYSPEGSDEEPYRCSLSGDFMRAHIPSGFEKPPPLGTYDGQTDPDDHFDNINAILDFRRVSGAIRCRLFPTTLRKGAMAWYQSLAPESVSSLRDLTDQFCRNFIAFRRHPKTVVTLEAIYQGPDESLRNYIKRFNKEAVQVNTTDNMKKYLLERGLRPRSDFAKAVGIEKPHTLDELLTKAQPYIQYEEREAANSIRHSRSEDNPSRQESNPPPRESSRGEGGKKKNDKPREPRGQPSMFSSYTPLISSREHILSECAASEFRQGGIRFPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MK35</accession>
    <name>A0A392MK35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012393">
        <property type="protein sequence ID" value="MCH87533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MK35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH87533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12887" checksum="3D82DC44E9FE68FC" modified="2018-12-05" version="1" fragment="single">MLTVLPLGKTVRAFLGGFEGIKATIHHPKRDPILIWSHTTGVGMAEPLDDSKANIDDPIVVEPVVDEPNVVEPDVEEHIVVDTAHFFSSAKKYKVRDDLIGWCRQEALKTGFTVVIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKF3</accession>
    <name>A0A392MKF3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">YTH domain-containing family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0008530</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically recognizes and binds N6-methyladenosine (m6A)-containing RNAs, and regulates mRNA stability. M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in mRNA stability and processing.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YTHDF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012657">
        <property type="protein sequence ID" value="MCH87653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990247">
        <property type="term" value="F:N6-methyladenosine-containing RNA reader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061157">
        <property type="term" value="P:mRNA destabilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.590.10">
        <property type="entry name" value="ph1033 like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007275">
        <property type="entry name" value="YTH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045168">
        <property type="entry name" value="YTH_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12357:SF126">
        <property type="entry name" value="YTH DOMAIN-CONTAINING FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12357">
        <property type="entry name" value="YTH YT521-B HOMOLOGY DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04146">
        <property type="entry name" value="YTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50882">
        <property type="entry name" value="YTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="YTH" evidence="2">
        <location>
            <begin position="19"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU369095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH87653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="14071" checksum="AF56EFEB9FA16F2C" modified="2018-12-05" version="1">MNEGRRASNSSYDKNVKSLGPVTFLLKGQDLPIKSDNQKVNPVPNKQQYDLSENYSDAKFSVTKSYSKDDIHKVNTSGQCVGLEKMASPVDFDRTVEYWQQDRWTCYFSVKLHIIKDISYHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKQ6</accession>
    <name>A0A392MKQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0008973</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013474">
        <property type="protein sequence ID" value="MCH88092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="280" mass="32179" checksum="6BD64C2221C9135A" modified="2018-12-05" version="1" fragment="single">EDLAGMMRRAVEIGRFKGFHVNDNIQFQILQFADDTILMGEDVIPFRFLGIPVGANPRRKETWKPMVEAMTRRLSCWNSRHLSFGGRITLINSLVRIQRNFLWGGGIEDKKLGWVKLEQICLPKDQGGLGVKNLEFFNAALLSKWKWRFLVDGEAVWSDLLKFRYGHLPTRLMTEASNVNGSKESIWWKDVLGIGRLGEDDWFKSNIGCGLAVLVMAITLAFGNLSDKLNWNGVDPVWMWQWRDTPSDIENRQLLELQNLLAEITYEGSVKPQRYFTQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLI8</accession>
    <name>A0A392MLI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013247">
        <property type="protein sequence ID" value="MCH87965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF15">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="222"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="353" mass="40388" checksum="3BC820C69D566E17" modified="2018-12-05" version="1">MPKVVWKKIVQIQRDFLWGGAKGGKRISWVKWSVVCKEKRKGGLGVRDVXXXXXXXXXXXXXXXXXXXRPLWKEVLVARYGSLILNDVDWSFLRATPSASNWWKNIIALDKAVPGKNWLVDSMARKLGNGLSTSFWNTKWIGEIPLALAFPRLFSLSNHKENMVRDFLESEGGNRSWSFSWRRNLFQWEEDRVVVLKELLESATFSLEEDCWTWLPDEEGEFSVKSAYMLLLEELGPNVEVEGGLEIILDKIWDSPAPSKAIAFSWQLLYDRVPTRSNLEVRGIMLAETPWECMGCVGKVETSTHLFLHCPCAMMVWSEIFKWLGVLVVIPPSIASLFEVLKEAAKNLKIQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MNC9</accession>
    <name>A0A392MNC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Werner syndrome-like exonuclease-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0008672</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012926">
        <property type="protein sequence ID" value="MCH87794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MNC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051132">
        <property type="entry name" value="3-5_Exonuclease_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620">
        <property type="entry name" value="3-5 EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620:SF121">
        <property type="entry name" value="EMB|CAB82946.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="215"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="3'-5' exonuclease" evidence="4">
        <location>
            <begin position="42"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH87794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28368" checksum="9368C56E108FF48B" modified="2018-12-05" version="1">MGYTEVKSIELNGLEIKTTLTDEAKSIDDHISSFFSPTNNNGTKVIGFDVEWPIEYKDSTDYLFKRANFQLCDGNSCLIICLPFSSDVVPKSLHNFLRMPNYTFVGIGIIDNLAFLEKEHGIVFRNAVELGPLAASLMKMPHLSYCGVDELASVVCKLDLRKYRPSSLDFSWGKYYLNEELVKHATVNVYSYHKIGSALLCTAPIPQMPVFIRRLLILFSVLIVYSFCRTFGRILSVIVDVVWFFVAKMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MQJ0</accession>
    <name>A0A392MQJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Insulinase (Peptidase family M16)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010658</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016826">
        <property type="protein sequence ID" value="MCH89757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MQJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.830.10">
        <property type="entry name" value="Metalloenzyme, LuxS/M16 peptidase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050626">
        <property type="entry name" value="Peptidase_M16"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43690">
        <property type="entry name" value="NARDILYSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43690:SF33">
        <property type="entry name" value="STROMAL PROCESSING PEPTIDASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14114" checksum="90BE920D62A33246" modified="2018-12-05" version="1" fragment="single">SSNPPFTSVELDHSDSGREGCTVTTLTITAEPKNWQNAIRVAVHEVRRLKEFGVTQGELTRYLDALLKDSEHLAAMIDNVSSVDNLDFIMESDALSHKVMDQRQGHESLLGVAGTVTLDEMQVSIGGMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR09</accession>
    <name>A0A392MR09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Mitochondrial-like substrate carrier family protein B-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0010001</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015480">
        <property type="protein sequence ID" value="MCH89108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002067">
        <property type="entry name" value="MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24089">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00926">
        <property type="entry name" value="MITOCARRIER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="Solcar" evidence="6">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="repeat" description="Solcar" evidence="6">
        <location>
            <begin position="78"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH89108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18780" checksum="0612BBDDB786774A" modified="2018-12-05" version="1" fragment="single">VQGMYFDVGHVAALRKPSLMYEAQRIVNEEGFRAFWKGNLVTIAHRLPYSAVNFYTYECYKNLLHSVLGENHRATASSDVFVHFVSGGLSGMTAASALYPLDLVRTRLAAQRNVIYYRGITHAFSTICREEGFFGMYKGLGATLLGVGPSIALSFSVYESLRSFWKSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR15</accession>
    <name>A0A392MR15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative acyl-activating enzyme 17 peroxisomal protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016774">
        <property type="protein sequence ID" value="MCH89733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44378">
        <property type="entry name" value="ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44378:SF3">
        <property type="entry name" value="ENZYME 17, PEROXISOMAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14425" checksum="51E9E091ECC1369E" modified="2018-12-05" version="1" fragment="single">DFISGGGRKIPLYREQDLSWKDFLSSGHQSSRSDHYSPVYQSIDSVTNILFSSGTTGWVIGPTLLYNCFLNGATLALYHGFPQGRGFGKFVQASLPSASNDAGVTILGTVPSLVKSWKSTRCMEGLDWTKIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR24</accession>
    <name>A0A392MR24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017289">
        <property type="protein sequence ID" value="MCH89957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13769" checksum="0C89B6D0D675F805" modified="2018-12-05" version="1" fragment="single">DSSSSRVFIFLQQHRFTAKPKLSGRVSTTATQRRSATSNSACSIQRNGKDVHKSYFSIFNFNFTSFIRFDLIRFVGVAASSSPAASIEVVANVALLPHEGVKTMVVVSAVPLGVVQLGSLTKTLYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MS42</accession>
    <name>A0A392MS42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative GPI-anchored protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011184</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017969">
        <property type="protein sequence ID" value="MCH90271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MS42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8163" checksum="2A456618427206B2" modified="2018-12-05" version="1">MTLTLPPAPKSPCFSNTLLLILLTLFKIPCYLYLPIRDAATIQPITQNPSSSSQGTIPAFPEQVNVARCLFKSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MTZ1</accession>
    <name>A0A392MTZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">70 kDa peptidyl-prolyl isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0011901</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019445">
        <property type="protein sequence ID" value="MCH90977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="32"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH90977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="186" mass="21399" checksum="C478747D5210C324" modified="2018-12-05" version="1">MLGECQALLHNLFLQTHFSDMWQWQLDPVRGYSIHGAYQLLTSQQHVTLDAAEELIWHKQVPLKXXXXXXXXXXXRLPTKTNLVIRGIITPGAHLCVSGCGRVEPAEHLFLSCSNFGSLWSLVRAWIGFSSMDPQNLSDHFIQFTYSSGSLRARRSFLQFIWLLCVWVIWNERNQRLFSNSESSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MU12</accession>
    <name>A0A392MU12_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0011964</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019554">
        <property type="protein sequence ID" value="MCH91040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MU12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF171">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="256"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="286"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="328"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="294"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="384" mass="43521" checksum="E18CC5C7C871135D" modified="2018-12-05" version="1" fragment="single">VERVNMSHSGSFPGRQPPPSPTRPPETTQASKQKCSFRDKLLGNQAPIPRRETIDLIGQKLFRIEFENGDRRRPRCYTDDSVLKDLWLPWQHAVIVKLLGKTLGFVTMRDRLRAIWKLTGDMDMMSIGHGFFMVKFDLEADRDKVISGGPWMIYDHCVAIRPWTTDFISSQVQINKTHVWIRFPSLGMEYYDESLLLALATAVGRPIKVDIHTLDASRGKFARVCIEIDLDKPVVGKVWFRDFWYKVEYEGLHLLCQRCGIYGHVSRNCPPTDNAKKHTEADTSVKAAGGVETTVPSVTESPPNTDMESNKNDINNEDLYGDWLVVNRKKNRKSRPKNQEERAGVTNLGKPLGKGVSFAHLTDVGKENDDGGAKFHVMGSKFHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV10</accession>
    <name>A0A392MV10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GDSL esterase/lipase apg-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0011788</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019218">
        <property type="protein sequence ID" value="MCH90865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MV10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050592">
        <property type="entry name" value="GDSL_lipolytic_enzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45642">
        <property type="entry name" value="GDSL ESTERASE/LIPASE EXL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45642:SF45">
        <property type="entry name" value="GDSL-LIKE LIPASE_ACYLHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH90865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="163" mass="18291" checksum="F06730DB61D45FBF" modified="2018-12-05" version="1" fragment="single">ETLGFTTFPPAYLSPQASGKNLLIGANFASAASGFDEKAATLNHAITLPQQLSYFKEYQGKLAQVAGSKKAASIIKDSLYLLSAGSSDFLQNYYVNPWVNKLVTVDQYSAYLLESFNSFVKFSDKWARRSTKVKPHVVQLKDNLVKWLVVFKHKFYSINHKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYW5</accession>
    <name>A0A392MYW5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023349">
        <property type="protein sequence ID" value="MCH92746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYW5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="249" mass="28426" checksum="8596E53D02F6629C" modified="2018-12-05" version="1">MKGPVIDDTCCFVDMIDECIKELSSEAPATDDIVAFLTKEGWEDEVEIPQGHLDTSPLECLALAPDSPPTQEQPKIELKSLPQNLRYEFLEHDWPVIVNADLAVLKKYSEAIGYSIDDLKGISPSICMHKIMLEEDYKPSREHQRRLNPNMSEVVKKEVLKLMDTDVIYPISNSKWVSPVHVVPKKGGMTVVKNEKGESVATRTTTGWRMCIDYRKLNKAMRKYHFPLLFIDQMLERLAKHSHFCYGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ46</accession>
    <name>A0A392MZ46_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0013172</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022222">
        <property type="protein sequence ID" value="MCH92235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF176">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="80"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="333"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="333"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="379"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="414" mass="46660" checksum="B6A0D4F09BBA956F" modified="2018-12-05" version="1" fragment="single">TNPVFTMETYCIPWACLDSESKQPSPIVNPPKTPKSFAQAVNNVCDIPVSQLPQACVKGDGLAIEIPEHEYLAGIDVCKHNLHGRIIWPKGSTPLTVAALKNKLAPLWKDLAKWGVSSLGKGYYEFCFSSLEDVRRVRSVASWSLNPGLLKLFAWTKDFSPRSQQNYSAQVWVRLYGLSQEYWRPNILFAIASSVGTPICTDAITAKPMIDRTFGQFARVLVDMDLTQTIRYKVLVERKGFAFFVELDYENLPAFCNNCRMIGHYVEVCKRIHLIDGTMNDTKQRNLKTQPKEAKKVYVQKQASRVEQRITTTRETIVNDDNSDDVFIMEKQPEAETSKTPADPKEAQTVGVHSQPLISQNRFDALEGQEDGEAHNQKQVENGNSQEVEDNSQSTEFVENTQMSNISKSRTGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZY0</accession>
    <name>A0A392MZY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Topless-related protein 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0013409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022766">
        <property type="protein sequence ID" value="MCH92469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027728">
        <property type="entry name" value="Topless_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083">
        <property type="entry name" value="TOPLESS-RELATED PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083:SF35">
        <property type="entry name" value="TOPLESS-RELATED PROTEIN 4-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11376" checksum="4925387A0296AC8A" modified="2018-12-05" version="1" fragment="single">VNNLPVNLLPVGYSSQSHGQSSYSSDDLPKTAVLTLNQGSNVKSMDFHPLQQIVLLVGTNMGDVMVWDIGSRERIAHRNFKASLSNEYTASVNRVVWSPDGTLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1L6</accession>
    <name>A0A392N1L6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zinc knuckle CX2CX4HX4C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014435</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025051">
        <property type="protein sequence ID" value="MCH93483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1L6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF176">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="1">
        <location>
            <begin position="228"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="38434" checksum="00391F71EEB44361" modified="2018-12-05" version="1" fragment="single">METFSIPWPCLDLSPKQTGPEENINKESETLNINKAKKSFAQVVNNVRDIPLSQLPQACFKGDRLAISIPETDYLAGMEACKHNLHGRIIWPKGANPLNIGALKNKLTPLGKDLAKWGVQSIGKGFYEFSFSSLEDVRRVRSVASWSLNPGMLKLFAWTNDFNPRAQQNYSEQVWVRLYGLSQEYWRQNIIFAIASSIGIPLCTDSATTKPLMERTFGQFTRVLIDMDLTQTLRYKVLVERKGFAFFVDLEYENLPEFCSNCKIIGHHVGICKKLMPIDDAKIVKEQQDRRKVTNRRIFVPKPGNKGKEVIVEESREGNHDKSTEEVVIVNQPDGEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2R4</accession>
    <name>A0A392N2R4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025974">
        <property type="protein sequence ID" value="MCH93873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="56"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="255" mass="29898" checksum="52391A3AE4B86E0C" modified="2018-12-05" version="1">MMEIDGERRDWNLLWRRSLFQWEEEKVILLLASLQNVTLSHEVDKWSWSLNPEGSFSVKSAYESLSKVLVEGPNLTSYEKMVFGKIWESPAPFKVIAFSWQLLYDCVPTKENLLLRGVLHHGGGEGNCVWCVDXRESSSHLFLHCKMALEVWYAIFKWLGVVIVMPPNLFHLFYCLSEAAATKKVRNCFRLVWHLVLWVIWKAQNNMIFSNLAKETLEVVEEVKVISWKWSAARLKISPCLFYEWCLEPRICLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2V4</accession>
    <name>A0A392N2V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">UDP-galactose transporter 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0014246</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024614">
        <property type="protein sequence ID" value="MCH93298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004853">
        <property type="entry name" value="Sugar_P_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050186">
        <property type="entry name" value="TPT_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11132">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03151">
        <property type="entry name" value="TPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="Sugar phosphate transporter" evidence="6">
        <location>
            <begin position="5"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH93298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16904" checksum="B56C1572607B234C" modified="2018-12-05" version="1" fragment="single">INTVYYMAPFATLIMVLPAFLLEGNGILEWFSVHPYPWAAMIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISYMNAVGCAITLVGCTFYGYVRHMLSQQPPVPGTPRTPRTPRSKMELLPLVNDKLDDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N489</accession>
    <name>A0A392N489_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015503</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027567">
        <property type="protein sequence ID" value="MCH94541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N489"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7811" checksum="A68C91D7F1759520" modified="2018-12-05" version="1" fragment="single">VFDVAASRVEFLSSCPYVVVVFRYFGYVLKALPRESFDIGECLSSDGQEYDISTNQYTKGQRMTVKWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4E3</accession>
    <name>A0A392N4E3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein CPR-5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026358">
        <property type="protein sequence ID" value="MCH94049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010150">
        <property type="term" value="P:leaf senescence"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010090">
        <property type="term" value="P:trichome morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044708">
        <property type="entry name" value="CPR5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35322">
        <property type="entry name" value="PROTEIN CPR-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35322:SF2">
        <property type="entry name" value="PROTEIN CPR-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="21710" checksum="D8F7A037B4F5C2F9" modified="2018-12-05" version="1" fragment="single">MKFATCKLTHDKGDCSSDSVIDGGNSEGVLHEKIQDQSNNCKEVGENSHMDSISHGVTLHRQSNQLVCFPPISSGSGINNNSMISVSEKSVMEESRSNDLKTLEXXXXXKKLKLKETQLVLNSDLNHLERSKLAMGMSKASFKVEKFKNQLEDTRHGELIKNCVDCLIAGLLVMSSSLLYGAYVYSYERIAESTASC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5Z2</accession>
    <name>A0A392N5Z2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0016191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029231">
        <property type="protein sequence ID" value="MCH95216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8330" checksum="AF501F7C4CC6BE82" modified="2018-12-05" version="1" fragment="single">SSSGADHMKREKKSGQEAAFGTCAWRRDTWRAAPHKALKEILLRMSARGAGSIGARREIKTLLKDRFGYRRVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N892</accession>
    <name>A0A392N892_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">U-box domain-containing protein 13-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015669</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027952">
        <property type="protein sequence ID" value="MCH94704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N892"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057623">
        <property type="entry name" value="PUB12-19-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003613">
        <property type="entry name" value="Ubox_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315">
        <property type="entry name" value="U BOX DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315:SF275">
        <property type="entry name" value="U-BOX DOMAIN-CONTAINING PROTEIN 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25368">
        <property type="entry name" value="PUB10_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04564">
        <property type="entry name" value="U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57850">
        <property type="entry name" value="RING/U-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51698">
        <property type="entry name" value="U_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="U-box" evidence="3">
        <location>
            <begin position="167"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22109" checksum="4CF7AC6CB2B71E3F" modified="2018-12-05" version="1" fragment="single">ILERDQIMNSFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSSLYNNSSDTATDPAILSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTATAKGVSSGFYGLEENDKNHQVPAIPSDFKCPISLELMMDPVIVSTGQVCAFYDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA86</accession>
    <name>A0A392NA86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Scythe protein ubiquitin-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033159">
        <property type="protein sequence ID" value="MCH96756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071818">
        <property type="term" value="C:BAT3 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051787">
        <property type="term" value="F:misfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031593">
        <property type="term" value="F:polyubiquitin modification-dependent protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15204">
        <property type="entry name" value="LARGE PROLINE-RICH PROTEIN BAG6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15204:SF5">
        <property type="entry name" value="LARGE PROLINE-RICH PROTEIN BAG6 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="168"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="21147" checksum="1F023777D1F59AB8" modified="2018-12-05" version="1" fragment="single">MCVPKQKRTRLQPPVGKAADDGSSSSSINRSQETRTDSQNILQTLASQGSAANLINADRTSSQRPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQHVGSQDMGNMLTGTGRGQGGGVDFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETRAPYRNENSDNRSLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB17</accession>
    <name>A0A392NB17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aconitate hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032931">
        <property type="protein sequence ID" value="MCH96671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043436">
        <property type="term" value="P:oxoacid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="entry name" value="Aconitase, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006249">
        <property type="entry name" value="Aconitase/IRP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670">
        <property type="entry name" value="ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52016">
        <property type="entry name" value="LeuD/IlvD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase A/isopropylmalate dehydratase small subunit swivel" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="14989" checksum="2C1B91448ECBFE56" modified="2018-12-05" version="1" fragment="single">RYKASGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPNKISEIKPGQDVTVTTDNGKSFTCTARFDTEVELEYFNHGGILPYVIRNLINKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB48</accession>
    <name>A0A392NB48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017700</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033028">
        <property type="protein sequence ID" value="MCH96711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7381" checksum="F575D0A6F16F53FE" modified="2018-12-05" version="1">MSYAITTKVCDHLSLGVCHCTSTTTTTGEAKAIDSSTNKMKLVEQTDGATKKKTCNDDLEDHESVEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBS2</accession>
    <name>A0A392NBS2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0018253</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010034479">
        <property type="protein sequence ID" value="MCH97260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF99">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="280"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="294"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="69"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="312"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH97260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="371" mass="41661" checksum="490919FC8D574A43" modified="2018-12-05" version="1" fragment="single">DAKTKDETDLQERSTKKIKGGEHDYSNHSSSLKDYSDLVELQAMENGGGRSYRAMVTGETGEAEKETDVEGEGESDEEGEKETGIKVEENEIGGYECPEFVFSKMEEKRIHRPWRRGVIVKLLGRRIGYKALETRLKQXWVRKGVITIIDLGNDYYLVAFSNAEDQYAALMNGPWFIYDHYLTVKEWSPNFHPANDTISKVVVWVRISGLPIEFYDAKVLKCIGDRIGRTVKVDKNTLAQERGKYARLCVEVDLTKKLLGMFSIKTRKYNVEYEGLHCLCITCGKFGHYKESCPEKPKQPEDNGGVKQLEGDGSGVVGGSVDGPWVVVKKTRRQRKGKDTAAEQGHGKGVTGDCSLASGPVYRRVIIHTPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDI3</accession>
    <name>A0A392NDI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIR-NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036276">
        <property type="protein sequence ID" value="MCH97927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NDI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5320" checksum="22B56B3F64106B93" modified="2018-12-05" version="1" fragment="single">MEVEPSTNMEVEPTEEVNVQLSPEVDMQPSPDAKLEASITMEIEQSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NF29</accession>
    <name>A0A392NF29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger protein CONSTANS-like 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0019170</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036911">
        <property type="protein sequence ID" value="MCH98171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NF29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009909">
        <property type="term" value="P:regulation of flower development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010402">
        <property type="entry name" value="CCT_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045281">
        <property type="entry name" value="CONSTANS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31319">
        <property type="entry name" value="ZINC FINGER PROTEIN CONSTANS-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31319:SF77">
        <property type="entry name" value="ZINC FINGER PROTEIN CONSTANS-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06203">
        <property type="entry name" value="CCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51017">
        <property type="entry name" value="CCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCT" evidence="4">
        <location>
            <begin position="90"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH98171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16438" checksum="3A231B6F911A78BB" modified="2018-12-05" version="1">MLSDSEAIPFMDLDYGAIEHKNDGVVPVHGNFDRFTSAYKNNTHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYVKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDAVDSISGYGVVPTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGA5</accession>
    <name>A0A392NGA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Callose synthase 3-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038815">
        <property type="protein sequence ID" value="MCH98896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9911" checksum="807E3A62F4B60CE7" modified="2018-12-05" version="1" fragment="single">MVIIAWNDSGSLSNIFDGDVFKKVLSIFITAAILKLAQGSPSMFILAVFIYLSPNILSALLFLFPFIRRYLERSNYGAVKLMMWWSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGF7</accession>
    <name>A0A392NGF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0019840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038630">
        <property type="protein sequence ID" value="MCH98832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004252">
        <property type="entry name" value="Probable_transposase_24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03004">
        <property type="entry name" value="Transposase_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17767" checksum="39D5621BAB52D9AC" modified="2018-12-05" version="1" fragment="single">MSTLLSNARCSGKKPEWIGRNAWPGLEEKWGKSSYKEKCKKAAGNRACNSRGGSIHSGGQTSGATFRAQFFQDNGRDPELLDVHEYFHKRPDGTWDTVEAARVQREMDQFEEAFNAQQNALPPSERATEEVRDTIMVDQFVEVAGGMQKNRLRGQGNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH36</accession>
    <name>A0A392NH36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative ribosomal RNA small subunit methyltransferase NEP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0020188</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase NEP1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039590">
        <property type="protein sequence ID" value="MCH99177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070037">
        <property type="term" value="F:rRNA (pseudouridine) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005304">
        <property type="entry name" value="Rbsml_bgen_MeTrfase_EMG1/NEP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12636">
        <property type="entry name" value="NEP1/MRA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12636:SF5">
        <property type="entry name" value="RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE NEP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="15"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH99177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11689" checksum="4A2AF229A53818B7" modified="2018-12-05" version="1">MRKKKEKKKRKKNRVYAERSLRQKEQNTAIAPPTENNSDRPCIIFILERASLEVAKVGKTYQLLNSDELANFLCKNNKNPAHYRHFSDLACPGTMNTVLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH37</accession>
    <name>A0A392NH37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SANTA (SANT associated) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0020151</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039496">
        <property type="protein sequence ID" value="MCH99140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18152" checksum="EA7E8A072F80BCA0" modified="2018-12-05" version="1" fragment="single">KENPIPTPLVFPEEAPGECKKPSIADKCKVSKEMSGVDVAYGSDENRRCTMLYNSKVFQQKQQPASGGPLKHPDIEQSSTSMKVENRDSDTAISNNVSANHPEISPGAVEKSFHTSFVSPEKATGDYKKSLLEDEHDKSIKMSEVNVVHGSGGNKRSVRLHNVKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH39</accession>
    <name>A0A392NH39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Proline iminopeptidase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037528">
        <property type="protein sequence ID" value="MCH98418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051601">
        <property type="entry name" value="Serine_prot/Carboxylest_S33"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43248">
        <property type="entry name" value="2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43248:SF2">
        <property type="entry name" value="PROLYL AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="19660" checksum="94B0C2B3214EDA00" modified="2018-12-05" version="1" fragment="single">SYGGFCAVTYLSFAPQGLTQALLTGGIPPIGHGCTADSVYRACFEQIMHQNEKYYKRYPQDIKIVQELVNYLAEQEGGGVALPSGGILTPRGLQTLGLSGLGSGTGFESMHYMFERVWDPSLVPGSPKRISHYFLSSFENSITVDTNPLYALLHESIYCQVNVLFDCSCRVCIAVNQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHJ4</accession>
    <name>A0A392NHJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0019841</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038632">
        <property type="protein sequence ID" value="MCH98833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="2">
        <location>
            <begin position="203"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="28016" checksum="5025575415A0B8E5" modified="2018-12-05" version="1">MYQDLRAVFWWQGMKQDIARYVYACLTCQKSKIEHQKPIGLLKPLNIPEWKWDSISMDFVSGLPRTVGGYDAIWVIVDRLTKSAHFIPINLTFSLQELADLYVKEIVKLYGVPSSIXXXXXRRQMVKLRGPSNHWRIYCEPIYWNREGAGIVACRYERVVLGPEMIRQTTEKVKMIQEKMKAPQDRQKSYYDRKKMAVEFQEGDHVFLRVTPMTGVGRALKSKKLTPRFIGPYQILKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKF0</accession>
    <name>A0A392NKF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042997">
        <property type="protein sequence ID" value="MCI00368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="86"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14286" checksum="AB2C43DFEE5BEFA5" modified="2018-12-05" version="1">MFSTMITLLQQQAARLSYIEKNQETLPQMVNNHFQNSLRNVLQNEVSSQRRRTGQRGPQTEAIVNTNGNNAQVNNETDIVEPNGTRNVNGQGNDNRGNNENGGRGRNSPNPHSSDKGSSGDYPYEDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM95</accession>
    <name>A0A392NM95_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0021572</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043557">
        <property type="protein sequence ID" value="MCI00552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9696" checksum="A24A98AE44268BA5" modified="2018-12-05" version="1" fragment="single">MYEPEAVLATRKMRQQGEEFKQVLIHWKGKTVEEATWEEELMIRSQFPKFNLEDKVIADGGGIDRSQINEEAPREQMIHHGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQJ3</accession>
    <name>A0A392NQJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0022434</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030676">
        <property type="protein sequence ID" value="MCH95792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010046075">
        <property type="protein sequence ID" value="MCI01409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="89"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="112"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="19421" checksum="C7F6E823A6AF1C0F" modified="2018-12-05" version="1" fragment="single">VVAITVFCLLVIAFYAFLAPFVGGHILEYIFVGVYSPVALIVFILYVRCTAINPADPGIMSKFDPRVVNRFDSAHGLLGKHQSSERDVAAGGHSSPSSAASKRSMTNMSKKSSVEDPDRVQDSRYQNNPNSCDAIGGIFCILFSHEDCRKQEETADEQGGGEDALFCTLCNSEVLCCDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR24</accession>
    <name>A0A392NR24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022616</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046537">
        <property type="protein sequence ID" value="MCI01589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NR24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="22721" checksum="036D853F344B6623" modified="2018-12-05" version="1">MTGEKVHDVGGSSEQGNPSTKLVHKYRSNANDVKWARQGVVATVKYGEAIPVVQAQIADAGFQNLHIIPLGADKVFIHSLSAEDVMINFNGARPFFDHFFSSIVRWDKELLPIQRVAWVRLYGTSLHAWSVDFFKLCVLDCGRYLRTDEFSLEKDRFDYVRVLESKSKHVVDRDDHELGNHVDMLVEKIAADLVCVMRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRQ4</accession>
    <name>A0A392NRQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lysine-specific demethylase 5D-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022939</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047526">
        <property type="protein sequence ID" value="MCI01910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032452">
        <property type="term" value="F:histone demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003349">
        <property type="entry name" value="JmjN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10694">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10694:SF106">
        <property type="entry name" value="TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02375">
        <property type="entry name" value="JmjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00545">
        <property type="entry name" value="JmjN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51183">
        <property type="entry name" value="JMJN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="JmjN" evidence="1">
        <location>
            <begin position="41"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="22278" checksum="9F3762D06D606637" modified="2018-12-05" version="1">MGATNVVKCKRRRMVDKSSITRESSKFDSPDLNWTNMIPECPIYHPSQQEFEHPLVYLQKIAPEASKYGICKIVSPITATNPADYVLMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGSSEGLSSSDIEKAFWHEMIRGEKGAVEYGVNIEGSVFSCDPDDKLGTSKFNLKVSFYNSYLLNSFLMILKIFNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT99</accession>
    <name>A0A392NT99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0022732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046871">
        <property type="protein sequence ID" value="MCI01705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="11810" checksum="7701579F966F8257" modified="2018-12-05" version="1" fragment="single">NDAFGSGGSGGGVGAKLTPGGFNDGNMANGDGTETLFGGECRVNKCRSGGCGGGGGAGSVSDTSSSGFTSIALKQDGVVNGGSGKESGGMNGGSVGAETLSSNFDEGGGSGDGGGTGGGEYSCFRLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVH2</accession>
    <name>A0A392NVH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PGR5-like protein 1A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024869</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053396">
        <property type="protein sequence ID" value="MCI03828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016730">
        <property type="term" value="F:oxidoreductase activity, acting on iron-sulfur proteins as donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009773">
        <property type="term" value="P:photosynthetic electron transport in photosystem I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039987">
        <property type="entry name" value="PGRL1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31032:SF10">
        <property type="entry name" value="PGR5-LIKE PROTEIN 1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31032">
        <property type="entry name" value="PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14992" checksum="86B5DB7404DDCE63" modified="2018-12-05" version="1" fragment="single">MASKLLAFTLTCPRPFTASTAPSPSSTFASRLHPIQLNADRHSYLRRSLFVFPAKATSDQQDGKVEEDGVVDSKILQYCSIDQKEKKSLGELEQDFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSTVVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWY9</accession>
    <name>A0A392NWY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Inactive protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0025370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055002">
        <property type="protein sequence ID" value="MCI04323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17436" checksum="A51306750D807904" modified="2018-12-05" version="1" fragment="single">MKKCPPGTILEQKSDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGSVAAEAKKGQASWVVLDKHLKPEEKKCMEELQCNIVVMKRAQPKVLRLNLIGPQKKEVEEAGTSPSVQDDMLEKHTKNKIDSLVDSIKGPNVTPTSSPELGTPFTVTTEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NY23</accession>
    <name>A0A392NY23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0025740</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056205">
        <property type="protein sequence ID" value="MCI04693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NY23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="5">
        <location>
            <begin position="12"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI04693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12585" checksum="463F93263B68FDC3" modified="2018-12-05" version="1">MADQIPYAVAATLIHRLGSATLREFGRINGVMNELERLKNTVESIRAVLLDAEEKQEEQNHAVQNWVRRLKDVLYPADDLLDKFVIQDMRNKTDEPHQNKLTKLSKVTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ53</accession>
    <name>A0A392NZ53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DnaJ heat shock amino-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0025516</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055506">
        <property type="protein sequence ID" value="MCI04469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="entry name" value="DnaJ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45089:SF18">
        <property type="entry name" value="DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45089">
        <property type="entry name" value="DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="Chaperone J-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="J" evidence="2">
        <location>
            <begin position="49"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="211"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="146"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="211"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="265"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI04469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="284" mass="32408" checksum="D0569F26D878B5D5" modified="2018-12-05" version="1" fragment="single">MESRDFVAARKFALKAQKLYPVLENIAQMLVVCDVHCSAEQKAIDDEIDWYGILQLEHTAGDTMIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRTRYDMKLKVKKTAMPHHNPQKVPTNFNSAMKNNARPNFTNSNTQQQQQNKQPAQQQNGERRTFWTACPFCSVKYQYYREVLNKPLRCQHCHRPFVAHIVDIQGTSRTTNSSQQASKENVGSQGNSHAEXSNTNSFKNKVPVGVSRKSNVKRNWNQVNESSQSSDSTSSSDSSDSEVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZM1</accession>
    <name>A0A392NZM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Microtubule-associated protein TORTIFOLIA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0026277</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057948">
        <property type="protein sequence ID" value="MCI05227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000549">
        <property type="entry name" value="ARM repeat superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033337">
        <property type="entry name" value="TORTIFOLIA1/SINE1-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057600">
        <property type="entry name" value="TORTIFOLIA1/SINE1-2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31355">
        <property type="entry name" value="MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31355:SF32">
        <property type="entry name" value="TORTIFOLIA1-LIKE PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24714">
        <property type="entry name" value="TOR1L1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TORTIFOLIA1/SINE1-2 N-terminal" evidence="2">
        <location>
            <begin position="21"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI05227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="22773" checksum="08A973AEB3E4DE75" modified="2018-12-05" version="1" fragment="single">MSSRRHSLSGPPQLTGTPSTHELRQRVINCLNKLSDRDTLAGATVELESIAKTLNQDSFSSFLSCIHNTDSSSKSPVRKQCVNLLSLLSRFHGDALSPFLSKMIATVLRRLRDPDSVVRSACVDAVAEMSSRITRPAFSVAFLRPFMDALAMEQDANAQIGAALCLAAAVEAAPEPDVESLRRTTLPRLGKLLKTDSCKAKAPLLVLIGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6I3</accession>
    <name>A0A392P6I3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0028740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066249">
        <property type="protein sequence ID" value="MCI07671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6I3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="18922" checksum="343F43AA875D7A72" modified="2018-12-05" version="1" fragment="single">SDSSARTGGSSIDPKSSTSKIFADAGIPTHLLKGLNATTPEDALAKLIANRSSNSNTKGNSASSEQTVKSQVEQDAMDLRFKKDFIKGNILEMVEKDPNIVFGLKAFLGRLQTTRTNEALLLLVNQAEKHLDQFAKDFQKRGPTMQRLEKHKSRLMLSFGLKLISVKPMSMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P729</accession>
    <name>A0A392P729_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">B3 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0028623</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065815">
        <property type="protein sequence ID" value="MCI07554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd10017">
        <property type="entry name" value="B3_DNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050655">
        <property type="entry name" value="Plant_B3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31920">
        <property type="entry name" value="B3 DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31920:SF145">
        <property type="entry name" value="B3 DOMAIN-CONTAINING PROTEIN REM20-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02362">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="6">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI07554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21440" checksum="81B252FF3EE90D86" modified="2018-12-05" version="1">MWNVGLTTRDDTLYFTNGWQQFVKDHSLKENDVLVFKYKGESHFEVLIFGGESLCEKAASYFVRKCGHAQTEQGGSKAKDTNTATEEVINTASNGGVECGSPVKFQRLNSIGTPLDVPFVTTNETTFNTGVESASPEQFMADAVTKTTPVVIPSQTTGKRTKKXXXXXXXXXXXXXXXXXKAANSSERALEKEHSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P800</accession>
    <name>A0A392P800_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">A2U01_0028668</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065987">
        <property type="protein sequence ID" value="MCI07599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P800"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024788">
        <property type="entry name" value="Malectin-like_Carb-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631:SF45">
        <property type="entry name" value="LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45631">
        <property type="entry name" value="OS07G0107800 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12819">
        <property type="entry name" value="Malectin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Malectin-like" evidence="9">
        <location>
            <begin position="6"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="8">
        <location>
            <begin position="167"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI07599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23120" checksum="E61AE0FF8D10C43B" modified="2018-12-05" version="1" fragment="single">MFVCELSFPDDKFNRMWQPFKDENPVVISNSNISSSDFWNLPPVKAMSTGITTSKGKPLEIQWPPVLLQSSYYYISLYFQDNRNPSPFSWRTFDVAINGHTFYSNLNATSKGVTVYAAQWPLSGQTKITMTPSPDMPVGPIVNAGEVYQILPLSGRTQTRDIIAMEDLAKSLQNPPRDWNGDPCRPKGNSWTGVTCSDQFIARVIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P871</accession>
    <name>A0A392P871_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0028738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066237">
        <property type="protein sequence ID" value="MCI07669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P871"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4801" checksum="1BC1B21D118A0C9F" modified="2018-12-05" version="1" fragment="single">VNHPPLRPSANEPLPLGPPINSLPSMNIVIASNRRSEGPSYHHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDG7</accession>
    <name>A0A392PDG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0029987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070754">
        <property type="protein sequence ID" value="MCI08905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33868">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33868:SF19">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13515" checksum="108400A0E3D3C773" modified="2018-12-05" version="1" fragment="single">MNSESTAKAELLKALCRSQTRARXXXXXXXXXXXXXEHIVSLFFKQASQLFAYKQWLHVLQLENLCLQLRNKNPPLLNNLFPYGAGKHQRKSRRKTKNRRRGIGECVFAFAVGLALAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE75</accession>
    <name>A0A392PE75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein EXECUTER 1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0031143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074833">
        <property type="protein sequence ID" value="MCI10052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042651">
        <property type="term" value="C:thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010343">
        <property type="term" value="P:singlet oxygen-mediated programmed cell death"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044680">
        <property type="entry name" value="EX1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33917">
        <property type="entry name" value="PROTEIN EXECUTER 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33917:SF3">
        <property type="entry name" value="PROTEIN EXECUTER 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12014">
        <property type="entry name" value="Cyclin_D1_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7825" checksum="1113FAE36FA03384" modified="2018-12-05" version="1">MLLTFQIARYKGEGRLAEPGFQNPRWVDGELVILDGKHIKAGPVVGFVYWAPEYQFLVFFNRLRLQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRS0</accession>
    <name>A0A392PRS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cupin domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0035142</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090593">
        <property type="protein sequence ID" value="MCI14016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8160" checksum="1604AD7E7E6C9CFB" modified="2018-12-05" version="1">MASSCVGTLSSLNSSLLFSQTKHLSASATPRVSVTLPSTRRRVVRAAVTEKLGIKIERNPPESKLTQLGVRQWPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTA6</accession>
    <name>A0A392PTA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cullin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0036047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094279">
        <property type="protein sequence ID" value="MCI14912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15302" checksum="4D7A3A745DED3CBC" modified="2018-12-05" version="1" fragment="single">MASASSSVPVAENPINHMDLPPIASVGKSLIWTGDVMKFNLSLLKFCFERTVDFESLKANDFDIEEPFVNQAWKRYFEMLNGPIYANMVKEFWMKSYVFDAVSARMEEEQLVLKDTSLKGKSREEMGLKVFNGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYN6</accession>
    <name>A0A392PYN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0037588</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100895">
        <property type="protein sequence ID" value="MCI16446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="86"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24305" checksum="E60C83CFEDFD827D" modified="2018-12-05" version="1" fragment="single">MLCPRCSVICDKEATAGLKNYVPYVNHKGKWPNQRSNKGNAAAQAPTIHQRLGRNKTCVPSNRVPVNQWAHGQYVAFIKKVMEKGSSSNANQNNSSEAKKYSYRNNYMGKNPMTRTQWRRFQRQKKLANQSAQAGGNANAVKIVEMAKRPIKERISPPSDVEDAFMDDDLLESDGDFDVIVNVVSILPVEYDVWSKVNDEEDDFEESEMANHKPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392US35</accession>
    <name>A0A392US35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010960203">
        <property type="protein sequence ID" value="MCI78844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392US35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3242" checksum="8B45D1CA75F884C3" modified="2018-12-05" version="1" fragment="single">AGTPEFTFSELGLEDPAAFNSFMNPDPPADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LYE2</accession>
    <name>A0A392LYE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0000743</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010000558">
        <property type="protein sequence ID" value="MCH79981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LYE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="12" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0229">DNA integration</keyword>
    <keyword evidence="10" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="14">
        <location>
            <begin position="203"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="13">
        <location>
            <begin position="528"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="12">
        <location>
            <begin position="398"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="607"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH79981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="607" mass="69751" checksum="733D1D441E8E88D0" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392LZV9</accession>
    <name>A0A392LZV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0001330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001193">
        <property type="protein sequence ID" value="MCH80560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392LZV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="33"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH80560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="440" mass="49505" checksum="D8FC8200CFD6A643" modified="2018-12-05" version="1">MHPTRNPTPNDLASPLVPASALPLDQADATIQDVNIAFLQGQLSEEVYMQQPPGFIHTDFPSHICKLKKAIYGLKQAPRAWHDALKGFVLSYGFTMSLSDSSLFIYNKEGIQAFLLVYVDDLILTGSHPLFLKSFMKELSNRFSIKYLGYPHYFLGVELIPTADGLILSQHGHIRNLLKTFDMAGEKPTHTPLCTSTPLRLVDGSAQTDSKTFRSIIGALQYITLTRPDLSFSINKLSQFMHQPTQIHFQKLKRVMRYLKLTINYGLKLKKPAHLKLQAFSDADWGGNLDDHTSISAFIIYFGGNPVSWLSKRQRTVARSSTEAEYRSVANAAAEVMWLANLLSELHVKTPTPHLFCDNIGATYLCSNPVFHSRMKHIALDYHYVRQLVQLGQLCVSHISTKDQPADILTKPLSRPRFTYLRDKIGLTNCDPILRGCNST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M0W0</accession>
    <name>A0A392M0W0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chalcone synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0001687</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010001637">
        <property type="protein sequence ID" value="MCH80911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M0W0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030639">
        <property type="term" value="P:polyketide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000025">
        <property type="entry name" value="Chalcone synthase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001099">
        <property type="entry name" value="Chalcone/stilbene_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018088">
        <property type="entry name" value="Chalcone/stilbene_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011141">
        <property type="entry name" value="Polyketide_synthase_type-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877:SF62">
        <property type="entry name" value="CHALCONE SYNTHASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877">
        <property type="entry name" value="HYDROXYMETHYLGLUTARYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00195">
        <property type="entry name" value="Chal_sti_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00441">
        <property type="entry name" value="CHALCONE_SYNTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Chalcone/stilbene synthase N-terminal" evidence="4">
        <location>
            <begin position="5"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH80911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="19554" checksum="3DFBB5FE1FC24D79" modified="2018-12-05" version="1" fragment="single">MVSVAEIRKAQRAEGPATILAIGTANPPNKVDQTTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRQYVKRYMMYQQGCFAGGTVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M2J0</accession>
    <name>A0A392M2J0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0002017</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010002035">
        <property type="protein sequence ID" value="MCH81233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M2J0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046956">
        <property type="entry name" value="RLP23-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063:SF98">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE FLS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="266"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH81233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="313" mass="35235" checksum="8AB384E793BBA106" modified="2018-12-05" version="1">MLSLRRNQFYGTLPQSLCDLANIQLLDISKNNLSGQIFKCLKNFSAMSQSVSSTRPRDLNLCYVIGTEDKIGCEGYDLVALLMWKGAERLFKNNKLILRSIDLSSNHLTGDIPEEIGHLIELVSLNLSDNNLIGEITSEIGRLRSLEFLDLSRNHFSGLIPPSLAQIDRLSMLNVSDNNLSGRIPIGTQLQGFDASSYEGNVDLCGKPLDKKCPGDEEVAPQKQKAHEESSQQDKIPIYLSVALGFITGFWGLWGSLLLSRNWRETYVLFLNKVYLFMVLIATKFQSWLRGLLVTFFPSLLLLQSYHSSFKKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4H8</accession>
    <name>A0A392M4H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kinase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003104</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003492">
        <property type="protein sequence ID" value="MCH82302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058783">
        <property type="entry name" value="IREH1/IRE-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26031">
        <property type="entry name" value="IREH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="IREH1/IRE-like N-terminal" evidence="2">
        <location>
            <begin position="52"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="395"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="470"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="211"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="272"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="395"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="474"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF26031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="586" mass="65562" checksum="707B4DCCDE417FD9" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M4P6</accession>
    <name>A0A392M4P6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thymidylate synthase</fullName>
            <ecNumber evidence="3">2.1.1.45</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">A2U01_0002140</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the reductive methylation of 2'-deoxyuridine 5'-monophosphate (dUMP) to thymidine 5'-monophosphate (dTMP), using the cosubstrate, 5,10- methylenetetrahydrofolate (CH2H4folate) as a 1-carbon donor and reductant and contributes to the de novo mitochondrial thymidylate biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>dUMP + (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate = 7,8-dihydrofolate + dTMP</text>
            <dbReference type="Rhea" id="RHEA:12104"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="2.1.1.45"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:12105"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; dTTP biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the thymidylate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.45" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010002196">
        <property type="protein sequence ID" value="MCH81354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M4P6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004146">
        <property type="term" value="F:dihydrofolate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004799">
        <property type="term" value="F:thymidylate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046653">
        <property type="term" value="P:tetrahydrofolate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00351">
        <property type="entry name" value="TS_Pyrimidine_HMase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.572.10:FF:000007">
        <property type="entry name" value="thymidylate synthase isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.572.10">
        <property type="entry name" value="Thymidylate synthase/dCMP hydroxymethylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045097">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023451">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036926">
        <property type="entry name" value="Thymidate_synth/dCMP_Mease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000398">
        <property type="entry name" value="Thymidylate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020940">
        <property type="entry name" value="Thymidylate_synthase_AS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03284">
        <property type="entry name" value="thym_sym"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11548:SF2">
        <property type="entry name" value="THYMIDYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11548">
        <property type="entry name" value="THYMIDYLATE SYNTHASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00303">
        <property type="entry name" value="Thymidylat_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00108">
        <property type="entry name" value="THYMDSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55831">
        <property type="entry name" value="Thymidylate synthase/dCMP hydroxymethylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00091">
        <property type="entry name" value="THYMIDYLATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate synthase/dCMP hydroxymethylase" evidence="11">
        <location>
            <begin position="28"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00050752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00056634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH81354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="215" mass="24383" checksum="873CBBD988ED3E95" modified="2018-12-05" version="1" fragment="single">KYSGEGLLKNFFGLSVAQQMPSIGLKEREEGDLGPVYGFQWRHFGARYTNMHEDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVKPLQEQLQNLPKPFPILKINPKKKDIDSFAAADFKLIGYEPHQKIEMKMAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6A4</accession>
    <name>A0A392M6A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0003780</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004459">
        <property type="protein sequence ID" value="MCH82967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="16"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="145"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH82967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="299" mass="32786" checksum="6D84577759905039" modified="2018-12-05" version="1" fragment="single">MEVTPMKGVVMAIDNQGVSEAPLEKRITEDLGNDGNQPQKPPAKRTRVDADSRGGNEGLNVGSSHQVVVMGSGPAVGAPQPPLLLSGHSPKTVEELHSFFNPSDLEKLDQMTDVEQRKLMADSLPHVLRLVAMGGFMVSSGVSANVVMYRENESLKAEVERLKKENEKDELLVRVNSFESAIKEHGKPYDLKTKLGVVERALSAMQRDLTEKSSLITALKKDSIDKDVALVAKDSEIKGLWHTCRSLKKELTKSLNDSVNVGTEMFESPLLQVEHVKGIHISWEEVHPGQAVKDGKLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6Q7</accession>
    <name>A0A392M6Q7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004378">
        <property type="protein sequence ID" value="MCH82919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6Q7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9867" checksum="DC9B230FE8A565E8" modified="2018-12-05" version="1">MAMRTMTVNGAMQKLYLTRPRSYLYLLWCCNNLLSGNLLNENLLNLLNENVKGIHYCRSVSKNLFIIQIAQQEFVELICVLALNGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M6U0</accession>
    <name>A0A392M6U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Paired amphipathic helix protein Sin3-like 4-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0003617</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010004213">
        <property type="protein sequence ID" value="MCH82805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M6U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000122">
        <property type="term" value="P:negative regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013194">
        <property type="entry name" value="HDAC_interact_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039774">
        <property type="entry name" value="Sin3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12346:SF0">
        <property type="entry name" value="SIN3A, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12346">
        <property type="entry name" value="SIN3B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08295">
        <property type="entry name" value="Sin3_corepress"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00761">
        <property type="entry name" value="HDAC_interact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="Histone deacetylase interacting" evidence="3">
        <location>
            <begin position="106"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="33"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="38"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="73"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH82805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="210" mass="24271" checksum="5A34D4632B3FAF4B" modified="2018-12-05" version="1">MEGFNDFLLQAEKNDGGFLVGVMNKKSLWIEGNGLKPMKAERRDRDRGHDKDRYRDDGMKERDRESRERDKSTTISNKDVSGSKMSIYPSKDKYLSKPINELDLSNCEQCTPSYRLLPKNYPIPIASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRLEFANNVILPFTTLSLLICPIISKLRFYLGLGGNVKDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M767</accession>
    <name>A0A392M767_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0003399</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010003900">
        <property type="protein sequence ID" value="MCH82588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M767"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH82588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="23435" checksum="7A91E07956E68082" modified="2018-12-05" version="1">MFGAGYPLSANHIIYVFPYVGGDSSVWRVLLQDDGFTLFEGCRPPFPCFWIVRAGGSRYPVGRASCHKSSTYREEMENASAGGFDQILFVFPASVLGCEDPLHPVAGYVDLVVAPSDILFDRVDRGIAVPFLSLGFGPVKAYIGYGLLVKGGLGPFLVSFSSLRHPGRLPGQGCPLTYPQGLRLVRGGVCGRLNRPAHAVASWEGGLSLMACASTLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M7S9</accession>
    <name>A0A392M7S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0004298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005254">
        <property type="protein sequence ID" value="MCH83476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M7S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH83476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4337" checksum="EEBD27C82242F36D" modified="2018-12-05" version="1">MVMRRSSGLRVWRAVIVRSGGGFVRADLKEMVVVGGDCEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M8Z9</accession>
    <name>A0A392M8Z9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phospholipid scramblase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0004411</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phospholipid scramblase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005434">
        <property type="protein sequence ID" value="MCH83585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M8Z9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017128">
        <property type="term" value="F:phospholipid scramblase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005552">
        <property type="entry name" value="Scramblase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23248:SF9">
        <property type="entry name" value="PHOSPHOLIPID SCRAMBLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23248">
        <property type="entry name" value="PHOSPHOLIPID SCRAMBLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03803">
        <property type="entry name" value="Scramblase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH83585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="14168" checksum="C23D0E39ED713472" modified="2018-12-05" version="1" fragment="single">AKFAPLLARSNLIITRSMEWINLALGIVQQSRCAIYDPCHLESPVGLIQEQSNFIARQLFRRRRPFVALITDAMGNELFRVRRPFWWISSSIFVEIDGKEVGVVHRRRHLWRRIYDLYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392M9C1</accession>
    <name>A0A392M9C1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Double-strand-break repair protein rad21-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0004913</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010006234">
        <property type="protein sequence ID" value="MCH84082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392M9C1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008278">
        <property type="term" value="C:cohesin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990414">
        <property type="term" value="P:replication-born double-strand break repair via sister chromatid exchange"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039781">
        <property type="entry name" value="Rad21/Rec8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006910">
        <property type="entry name" value="Rad21_Rec8_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12585:SF69">
        <property type="entry name" value="FI11703P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12585">
        <property type="entry name" value="SCC1 / RAD21 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04825">
        <property type="entry name" value="Rad21_Rec8_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rad21/Rec8-like protein N-terminal" evidence="3">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH84082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15746" checksum="C719E6F02BB8D734" modified="2018-12-05" version="1" fragment="single">SILFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFELPDNDIFQGNYVDRHVSSKEQITLQDTLEGMVYKTSQFGLDERFGDGDASQIGLDLDEAPTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MB31</accession>
    <name>A0A392MB31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">A2U01_0004254</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010005187">
        <property type="protein sequence ID" value="MCH83434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MB31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF61">
        <property type="entry name" value="NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017370912" evidence="3">
        <location>
            <begin position="17"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="5">
        <location>
            <begin position="125"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH83434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="408" mass="46813" checksum="6C0C4E4ED247899E" modified="2018-12-05" version="1">MCSLWIALGLVQSLNGSEKLEHVARNYIDELHSRSFLQDVDDFGSSCEFKVHDLIHDLALYVAREDFVAVDSHIQNIPPQARHLSVVENDSLDHYLFPKSKSLRSILFPVHGVGLASERVLDTWVSRYKYLRYLDLSDSSIKIVPNSLAKLGHLRFLDLSRNDRIKRLPNSICKLLNLQVLLLSGCTELEELPKGLGKLISLRRLIVTTKQSTLPHDEFASLNHLQSLSFHDCDNLKLMFRQQLPSIEELHFESCGSLECLPLYIFPKLQTLYINDCQMLNLSLNSPIQELRMKYLILVNYPGLLALPRWTVGIADTLETLLISDLPDLKMLPECLTTMFNLKRIYIHNCPQLLCLPSDMHRLTALEDLRIVDCPELCRKCLPQSGEYWPMISHIKGIFIEEPRGEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MC43</accession>
    <name>A0A392MC43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">G-type lectin S-receptor-like serine/threonine protein kinase RLK1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0005914</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007853">
        <property type="protein sequence ID" value="MCH85072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MC43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.90.10.10">
        <property type="entry name" value="Bulb-type lectin domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001480">
        <property type="entry name" value="Bulb-type_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051343">
        <property type="entry name" value="G-type_lectin_kinases/EP1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976:SF27">
        <property type="entry name" value="RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01453">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00108">
        <property type="entry name" value="B_lectin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50927">
        <property type="entry name" value="BULB_LECTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0430">Lectin</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Bulb-type lectin" evidence="4">
        <location>
            <begin position="6"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH85072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="446" mass="50176" checksum="EB4E077F821BDD3B" modified="2018-12-05" version="1">MSLSLPNTAAQKNPITPGTSLSARDYNSMWLSPSSRYAFGFYQQGKNHFVVGIWLVDKMSNKVLVWTADRDGPPVTSTAELRLTMNGTIILTEQQRQDKLIVDAKARASSASMLDSGNFVIYGDNDNTNTIWQSFEHPTDTLLESQSLPCIRQLTSSLSETDSSTGRFCLHMKDDGNLVLYPEYIAETRWDAYWASNTTSSYSVKYYLSLNSTGSLQIWNSRNDSSPIATLPGAENDQQKTGGNQIIYRATLDFDGGFRLHAHHVNNGSDKIIASWPGENPCEVNGFCSFNSYCTLHDDKPLCNCLTGYKFIDSNKKTLGCERNYSKAECRGRKDGVAFYDMVPMNNIVWREHPYFETEDMSSDQNCSFACLVDCNCWAALYDGSRCKKQGFPLRYVRRAHESEASSTAFIKCSFVFSNYNIHPLHLQDSGIEVQKANEHWEHGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MD90</accession>
    <name>A0A392MD90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">A2U01_0005965</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007944">
        <property type="protein sequence ID" value="MCH85123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MD90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="7">
        <location>
            <begin position="142"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="504"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH85123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="504" mass="58482" checksum="1A6FE363B0A6263E" modified="2018-12-05" version="1" fragment="single">MPVKNIKLGDGHKVISKGMCAEIRMKLGTVDIRIDALVLELGGLDMVLGVSWLRGKQKSMGEEWWWPQHMQMEENTTAIPPTLQNILHQFQMIFSDQIQLPPERSQVHHIKLFPDHGTISVRPYRYPHHQKEEIEKQIHELLQAGVIRASMSEYSSPVILVKKKDHSWRMCVDYRALNKATIPDKYHIPIIDELLDELHGSTIFSKIDLKSGYHQIRVHTNYIHKTTFRTHNGHYEYLVMPFGLMNAPATFQATMNDIFRPFLRKFVLVFFDDILVYSKDVKEHENHLHQVLSVLLKHCFVANQNKCKFGCKQVDYLGHIISGEGVAVDPEKIKCIVDWPVPKSVKGDRGFLGLTGYYRKFIKDYAGRCIGAVLMQQRQPIAFFSKALSEGNLSKSVYEKELMALVLCIQHWRHYLMGKEFVVYTDHKSLKHFLQQKISSPDQQCWLAKLLGYQFEVKYKPGLENRAADSLSRCYDEVAFCSMMSYPQWMERKKLLDEVNSDPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MDN9</accession>
    <name>A0A392MDN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0005725</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010007536">
        <property type="protein sequence ID" value="MCH84888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MDN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="38"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="602"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH84888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="602" mass="67541" checksum="868A137BB3204060" modified="2018-12-05" version="1" fragment="single"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEB2</accession>
    <name>A0A392MEB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GYF domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008827">
        <property type="protein sequence ID" value="MCH85611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47471">
        <property type="entry name" value="GYF DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47471:SF1">
        <property type="entry name" value="PROTEIN ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15325" checksum="61524E7C543D38CF" modified="2018-12-05" version="1" fragment="single">ATDFRVWCENECVRLIGTKDTSFLEFCLKQSRSEAEMFLIENLGSYDPDHEFIDKFLNYMELLPSEVLEIAFQTQNDWKVAGGVISGNTSLQDIGQTDGSSSKGGKKGKKGKKVSASVLGFNVVSNRIMMGEIQTVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEW3</accession>
    <name>A0A392MEW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006894</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009623">
        <property type="protein sequence ID" value="MCH86040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="18741" checksum="1A459499ECDEE1A6" modified="2018-12-05" version="1" fragment="single">MNPPCVEGSICFVRLIENRLVAVTLTCGVFEGSGQELALEWFGGAYYGGLSADRHQVFEGIRFSVERGKVWNFEVFRDRGVLELLCERLRLPYFFFFFCFVVLWISLFEVFHSASQILICFSNSSTVALRLSYEPFSADPVIVRGVCVTGKSFTAAPRWAPNVLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MEX8</accession>
    <name>A0A392MEX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0006172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010008293">
        <property type="protein sequence ID" value="MCH85328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MEX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH85328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10187" checksum="5BA1B6784FD8E1D2" modified="2018-12-05" version="1" fragment="single">SKGVEEGNSSSSSSRTSIADSNLNLRISTMGKTGLVTSVHSCDELVQEVPELQVGIFDKLNRCKRGLSRCKVCRKHLSTYEPMKREFEPAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MG89</accession>
    <name>A0A392MG89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0006913</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010009660">
        <property type="protein sequence ID" value="MCH86059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MG89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF42">
        <property type="entry name" value="ZINC FINGER, CCHC-TYPE, RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="119"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="138"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="158"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="81"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="92"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH86059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="356" mass="39770" checksum="FF9FBF48417C8085" modified="2018-12-05" version="1">MELKQGNMSVAEYTAKFESLCAFSPHYNIVEAEYDKCVKFESGLRPDIKHLIGFSEIRDFPTLVNKSRICDEDGRAKSNYYKAMSDKKRKGQDRGKPYEDKGKKGVESSGGRKKGRGNCFKCGEMGHKSFECPKKEDKCFKCGRLGHKADVCQEKVICFNCGEEGHKILVCKKPKKTIGKVFSLSGEGADQVDNLIKGTCFIYDTPLIAIIDTGATHSFIFVNCMKRLSIPVTEIPGRIDVIFGMNWLIFNRVHINCCAKTAVFPKPEEDSQLMSSKEVKESLKEHAEIFAMFASLKPESGVKMEELPVVCEFPDVFPKDVSDVPPKREVEFTIDLVPGTSPICTVSNVSIRVEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGF2</accession>
    <name>A0A392MGF2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">peroxidase</fullName>
            <ecNumber evidence="4">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">A2U01_0007444</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 17">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="12">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="12">Binds 1 heme b (iron(II)-protoporphyrin IX) group per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peroxidase family. Ascorbate peroxidase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010010572">
        <property type="protein sequence ID" value="MCH86586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.420.10:FF:000001">
        <property type="entry name" value="Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.420.10">
        <property type="entry name" value="Peroxidase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019793">
        <property type="entry name" value="Peroxidases_heam-ligand_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31517">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31517:SF51">
        <property type="entry name" value="PEROXIDASE 55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00461">
        <property type="entry name" value="PLPEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00435">
        <property type="entry name" value="PEROXIDASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0106">Calcium</keyword>
    <keyword evidence="10 13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6" id="KW-0349">Heme</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 15" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="14">
        <location>
            <begin position="1"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="disulfide bond" evidence="13">
        <location>
            <begin position="65"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH86586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="22932" checksum="8D274091C6C83DE9" modified="2018-12-05" version="1" fragment="single">SDGPNWKVPLGRRDSLTANQSLANQNLPGPSFNLTQLKSAFAAQGLNTTDLVALSGAHTIGRGQCKFFVDRLYNFSNTGNPDPTLNTTYLQTLQSICPNNGPGTTLTNLDLTTPDTFDSAYYSNLKIGKGLFQSDQELFSTSGADTIAIVDSFNNNQTLFFENFKVSMVKMGNVGVLTGSQGEIRTQCNFVNGNSGLATKVTRDSSEDGGVSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGI6</accession>
    <name>A0A392MGI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methionine S-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007485</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010648">
        <property type="protein sequence ID" value="MCH86626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47087">
        <property type="entry name" value="METHIONINE S-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47087:SF1">
        <property type="entry name" value="METHIONINE S-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="1">
        <location>
            <begin position="107"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="210" mass="24338" checksum="1D22BA17432AE164" modified="2018-12-05" version="1" fragment="single">LEQCKQSGDAAYAALRSLLEGLDDPETRSQARIFLSHLQNRFPTKDSCDRCFQTYHFRIEDILLDQYEGYQGRNKLTMMVIPSIFLPEDWSFTFYEGINRHPDSIFKDRTVTELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVSWINLYLNALDENGQPIYDEEKKTLLDRVEFHESDLLSYCRENGIQLERIVGCIPQFEPIFSNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MGL1</accession>
    <name>A0A392MGL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipase D Z-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0007505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010687">
        <property type="protein sequence ID" value="MCH86646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MGL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.870.10">
        <property type="entry name" value="Endonuclease Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050874">
        <property type="entry name" value="Diverse_PLD-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10185:SF17">
        <property type="entry name" value="GM01519P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10185">
        <property type="entry name" value="PHOSPHOLIPASE D - RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56024">
        <property type="entry name" value="Phospholipase D/nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLD phosphodiesterase" evidence="1">
        <location>
            <begin position="119"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH86646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="24126" checksum="B2CD285989D5378E" modified="2018-12-05" version="1">MPHLSHVPGVLSTGDVLRWMAANATRRLDVIAQYWQLLASPDDPRSGDYGYTQDQMNKFGAHQGAAVYQALDDAADRNVNIRLLSHSGVYPTFTLEPSKLASGRPNVKNVTLLLKDWWGSGIVHAKVWISDNRDVYIGSANNDWKSLTQVKEVGIYLAGCPGIAKKVEIYFNNLWTIASFNSSAYTKTVMDQQWQVERKVPCWSHFIQPRDRCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MJP4</accession>
    <name>A0A392MJP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Callose synthase 10-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0008262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010012116">
        <property type="protein sequence ID" value="MCH87393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MJP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000148">
        <property type="term" value="C:1,3-beta-D-glucan synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003843">
        <property type="term" value="F:1,3-beta-D-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006075">
        <property type="term" value="P:(1-&gt;3)-beta-D-glucan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003440">
        <property type="entry name" value="Glyco_trans_48_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741:SF67">
        <property type="entry name" value="CALLOSE SYNTHASE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12741">
        <property type="entry name" value="LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02364">
        <property type="entry name" value="Glucan_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycosyl transferase 48" evidence="1">
        <location>
            <begin position="3"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH87393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9325" checksum="85CF09200CB0FD5E" modified="2018-12-05" version="1" fragment="single">NEGLRVAFIHVDESTTDESTPRVFYSKLVKADINGKDQEIYSIKLPGDPKLGEGKPENQNHAIIFTRGDALQTIDMNQYSIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MKG0</accession>
    <name>A0A392MKG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cell wall protein AWA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0007604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010010872">
        <property type="protein sequence ID" value="MCH86744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MKG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044277">
        <property type="entry name" value="GIP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775:SF1">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH86744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="264" mass="27946" checksum="3411A6343E76CDB7" modified="2018-12-05" version="1" fragment="single">IYLQGGILSTAGQTPLVTQAAGLMQSSIAVTQQPVPVFRPSGVHLSHYPPNYIPYGHYFSPFYVPPPIHQFLGNGAFPQQPQASTVYPPPQAVAAPGMKYPLPQFKPGTNAANSTHLVMPNAFGLYGSSPAGYNHNSVATAGNSTSNEDLNSSQFKETNVYISGPQSEGSAMWVAAPGRDMTNLPTSSFYNLPPQGQHVTFAPTQAGHGTFASIYHPAQAVTAAAVHPLLQQSQTMAGAVDMVGPGGHVYQTPQNAQINWPSNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLV9</accession>
    <name>A0A392MLV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009376</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014257">
        <property type="protein sequence ID" value="MCH88487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF515">
        <property type="entry name" value="GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="23022" checksum="F772BFADC90A7486" modified="2018-12-05" version="1">MSKPMKSHFLAAKRIFRYINGTLQYGILFPMKSHFLAAKRIFRYINGTLQYGILFPFGKGYSQLELIGHSDTDWCGDKIDRRSTTRFVFKLKGAPISWSSKKHSIVALPSCEAEYVLSIKLWIDNKSAINLAKNPIAHGKSKHIENRFYYLREQVTKNKIEVDYCPTNEQVADILTKAMKRVQVLKFIRGLGVVVFDNLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MLX3</accession>
    <name>A0A392MLX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010013706">
        <property type="protein sequence ID" value="MCH88203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MLX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5707" checksum="FC89757EC6F20FF5" modified="2018-12-05" version="1" fragment="single">MGLDPLQQMHRCSGSRAVGRVQDPVVPYCICHRRFDCGEDVMITLYSDHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MM93</accession>
    <name>A0A392MM93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0009517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014524">
        <property type="protein sequence ID" value="MCH88626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MM93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF77">
        <property type="entry name" value="DNASE I-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH88626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="249" mass="29029" checksum="13A34039983CB108" modified="2018-12-05" version="1" fragment="single">IVRQDLKNLNPNWADLVEAESRQVEVESDFNTIIGAHEYHGSGQPTRIAIEDFQEWTNAHDFIHLRTQGAKFTWSNGRRGRAHTEERLDRVICNQSWIDSWSSNSCCTLPKNRSDHYPLLHAFQLNNDRGASSFKFMKMWSSHHDCINVIKNVWNVSHVGCPMVVLNQKLKALKMRLKTWNKDVFGNIHTNVQSAESKLHQIQNQIHMNGCTDDLMDQEKLAQMELDKALKFEEEFWQEKSKKWGCSSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MMN4</accession>
    <name>A0A392MMN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclase/dehydrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0009352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010014226">
        <property type="protein sequence ID" value="MCH88463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MMN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042548">
        <property type="term" value="P:regulation of photosynthesis, light reaction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd08866">
        <property type="entry name" value="SRPBCC_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005031">
        <property type="entry name" value="COQ10_START"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34060:SF2">
        <property type="entry name" value="OS03G0837900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34060">
        <property type="entry name" value="POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03364">
        <property type="entry name" value="Polyketide_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Coenzyme Q-binding protein COQ10 START" evidence="1">
        <location>
            <begin position="149"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH88463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="285" mass="32192" checksum="68BEB9880784BA68" modified="2018-12-05" version="1" fragment="single">LSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAYRVERNVLGNQKLPLPEDDLHKKSLVINGTSVKKINGSLLENDKLAPGEDKEGLDTSISGSLPTSSSELNCNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVREVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFQGKWTFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPSNLCAIRDYIEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MP25</accession>
    <name>A0A392MP25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Regulatory-associated protein of TOR 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010187</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010015847">
        <property type="protein sequence ID" value="MCH89292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031931">
        <property type="term" value="C:TORC1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030674">
        <property type="term" value="F:protein-macromolecule adaptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071230">
        <property type="term" value="P:cellular response to amino acid stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009267">
        <property type="term" value="P:cellular response to starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030307">
        <property type="term" value="P:positive regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010506">
        <property type="term" value="P:regulation of autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031929">
        <property type="term" value="P:TOR signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004083">
        <property type="entry name" value="Raptor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12848">
        <property type="entry name" value="REGULATORY-ASSOCIATED PROTEIN OF MTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12848:SF16">
        <property type="entry name" value="REGULATORY-ASSOCIATED PROTEIN OF MTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="188" mass="21054" checksum="BA90C2AB767BE6E4" modified="2018-12-05" version="1" fragment="single">MPLTFRTPPVSLPRSSYIAGMRRVCSLEFRPHLMTTPDTGLADPLLGSGEASGTYDRSFLPQSSIYNWSCRHFSKPLLTAPDDSEEVFAIREERENFALEHIVKCQHSAVSRLTNPIAKWXIKGTQTVLLQPFSPIVVAADENECIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MPU3</accession>
    <name>A0A392MPU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aspartic proteinase-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0010383</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010016241">
        <property type="protein sequence ID" value="MCH89487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MPU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001461">
        <property type="entry name" value="Aspartic_peptidase_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033121">
        <property type="entry name" value="PEPTIDASE_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032861">
        <property type="entry name" value="TAXi_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13683">
        <property type="entry name" value="ASPARTYL PROTEASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13683:SF875">
        <property type="entry name" value="EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14543">
        <property type="entry name" value="TAXi_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51767">
        <property type="entry name" value="PEPTIDASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase A1" evidence="2">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH89487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="17054" checksum="FD145DA82BD533C4" modified="2018-12-05" version="1" fragment="single">MERIELNFFDTASSSTAALVSCSDPACSYAVQTATSQCSSQVNQCSYTFRYGDGSGTSGYYVYDAMYFDVIMGQSVFSNSSSTVVFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQLSSQGMTPKVFSHCLKGEGNGGGVLVLGEILEPNIVYTPLVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR55</accession>
    <name>A0A392MR55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ethylene-responsive transcription factor ERF020-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">A2U01_0010815</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017177">
        <property type="protein sequence ID" value="MCH89911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051032">
        <property type="entry name" value="AP2/ERF_TF_ERF_subfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31985:SF45">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31985">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0010">Activator</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="8">
        <location>
            <begin position="23"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH89911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20850" checksum="B4A762A154F6347A" modified="2018-12-05" version="1" fragment="single">IYIIYMNWIGSSSTSTSHGNDKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDIAVYCLKRPSTLDKLNFPEILSSYCIQQRDHLMSPRSVQKVASDIAMDVDARNIARETTMINETTHHMNENDQQVHNVVADDVFWWEGLVGDDDLSLQGVTQVSSQQQEDLNISIEDYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="32" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MR62</accession>
    <name>A0A392MR62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0010903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010017376">
        <property type="protein sequence ID" value="MCH89997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MR62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33471">
        <property type="entry name" value="ATP-DEPENDENT ZINC METALLOPROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33471:SF7">
        <property type="entry name" value="ATP-DEPENDENT ZINC METALLOPROTEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="FtsH protease domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH89997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10265" checksum="9319E01F49783C55" modified="2018-12-05" version="1">MVLFAGIAAEALIYGEAEGGENDENLFRNVCLLLEPPLSVAEMSNQARWSVMQSYNLLKWHKAAHRAAVKALESGGSLSAVIRRIEETLYSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MSK0</accession>
    <name>A0A392MSK0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA pseudouridine(55) synthase</fullName>
            <ecNumber evidence="1">5.4.99.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0011357</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010018309">
        <property type="protein sequence ID" value="MCH90441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MSK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160148">
        <property type="term" value="F:tRNA pseudouridine(55) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039894">
        <property type="entry name" value="Pus10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048741">
        <property type="entry name" value="Pus10-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21568">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE PUS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21568:SF0">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE PUS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21238">
        <property type="entry name" value="Pus10_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Pus10-like C-terminal" evidence="4">
        <location>
            <begin position="4"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF21238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH90441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13205" checksum="21DFD756CE280378" modified="2018-12-05" version="1">MENKLVRVKNLKLVGSHGWDLMREGEAEKQKQYAALVWISRPLKDEDFQHVSSVKDLNVGYFGPCMIDIGQVVHKDFVKKIILANVCFALTHAHKHWESFAKDPNQGATPSQSFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MV48</accession>
    <name>A0A392MV48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone-lysine N-methyltransferase ATX5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0012098</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019865">
        <property type="protein sequence ID" value="MCH91172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10198" checksum="734F6D8EC1CAE9F3" modified="2018-12-05" version="1" fragment="single">FQGQSELSYCESSQFHAAVEEAFLADQGIVENIIEDINAVAGNNGCSNSSILKEFQNVSASKRNADGLVXXXXXXXXXXXXXVFEFCMVYSDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXI2</accession>
    <name>A0A392MXI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Subtilisin inhibitor 1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0013193</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protease inhibitor I13 (potato type I serine protease inhibitor) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022284">
        <property type="protein sequence ID" value="MCH92256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009611">
        <property type="term" value="P:response to wounding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.10.10">
        <property type="entry name" value="Trypsin Inhibitor V, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000864">
        <property type="entry name" value="Prot_inh_pot1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036354">
        <property type="entry name" value="Prot_inh_pot1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33091">
        <property type="entry name" value="PROTEIN, PUTATIVE, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33091:SF29">
        <property type="entry name" value="SUBTILISIN INHIBITOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00280">
        <property type="entry name" value="potato_inhibit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00292">
        <property type="entry name" value="POTATOINHBTR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54654">
        <property type="entry name" value="CI-2 family of serine protease inhibitors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00285">
        <property type="entry name" value="POTATO_INHIBITOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0646">Protease inhibitor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0722">Serine protease inhibitor</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="21"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11969" checksum="D741E1561D6A9F40" modified="2018-12-05" version="1">MAEEKQGHGINPPQVHPNEPLPSSNMESHSCVRTYNQLLGTNNPTKTSWPELVGATAEEAERKIKEEISGAEIQVVPPDSFVTADYRTQRVRLYVDESNKVIRTPGIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MY61</accession>
    <name>A0A392MY61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0012140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010019938">
        <property type="protein sequence ID" value="MCH91214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MY61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16706" checksum="5E0F79796763DFB0" modified="2018-12-05" version="1" fragment="single">MHDDTQRERDISSYQKVIELNRFMDHIAGSITLILIRAEDEMSLLIFNISNGIGCMILGVVSEIYRFFQTHHYRRPHILINSPGPLLDLVIYTCGSCPRMDGNGSLGVQYHSQNQENAHLELLLQTVDQLLMIPIVSLEWGVFHLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYX6</accession>
    <name>A0A392MYX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Brefeldin A-inhibited guanine nucleotide-exchange protein 5-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0013699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023384">
        <property type="protein sequence ID" value="MCH92756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16186" checksum="2115AAD655E218B4" modified="2018-12-05" version="1" fragment="single">MLTQMISIVFRRMETDPVETSSVSGGHTITKAASAENLNTKPDETSAGDSNEKDMTLGDALSQAKDASLTSLEEIQSLAGGADIKGLEAVLDKAVHTEDVLPLSSGIDLESMSVAQRDALLVFRTLCKMGMKEDNDEVTTKTRILSLELLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N048</accession>
    <name>A0A392N048_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ubiquitin carboxyl-terminal hydrolase 9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023842">
        <property type="protein sequence ID" value="MCH92953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004843">
        <property type="term" value="F:cysteine-type deubiquitinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016579">
        <property type="term" value="P:protein deubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001394">
        <property type="entry name" value="Peptidase_C19_UCH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050185">
        <property type="entry name" value="Ub_carboxyl-term_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028889">
        <property type="entry name" value="USP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018200">
        <property type="entry name" value="USP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21646">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21646:SF46">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00443">
        <property type="entry name" value="UCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00972">
        <property type="entry name" value="USP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50235">
        <property type="entry name" value="USP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="USP" evidence="2">
        <location>
            <begin position="102"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="20636" checksum="7C71BF92A40131E0" modified="2018-12-05" version="1" fragment="single">MYGDILLDVSVDTDXSSHSGVHSMGNELALVPLEPXRSSVSIAGGPALSNGHTTGSGFNLYQGSGHTTGSGFNLYQGSSVSSSLTTVDDKYDSSRGERGGLAGLQNLGNTCFMNSSIQCLVHTPPLVEFFLQDYSDEINMDNPLGMRGELALAFGDLLRKLWSSGRTAVAPRAFKGKLARFAPQFSGYNQHDSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0P0</accession>
    <name>A0A392N0P0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP-binding protein engA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024773">
        <property type="protein sequence ID" value="MCH93366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0P0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010027">
        <property type="term" value="P:thylakoid membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051943">
        <property type="entry name" value="TRAFAC_Dynamin-like_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43681:SF1">
        <property type="entry name" value="SARCALUMENIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43681">
        <property type="entry name" value="TRANSMEMBRANE GTPASE FZO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10927" checksum="6B409FF002CCA45A" modified="2018-12-05" version="1" fragment="single">YLAISNFPSRRRRVIDKVKRKADTLAYELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVEIRGEISNIEKKLRTLQTEIQNLHVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2D2</accession>
    <name>A0A392N2D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0014308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024759">
        <property type="protein sequence ID" value="MCH93359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF19">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="28"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12173" checksum="9849CD92418A4A05" modified="2018-12-05" version="1" fragment="single">LRLPANIQFFLSGSWFMTRSLREVFFNNTAGYGGLLRESNGNFIWGFYGVAAQQNILFAEIMAILHGLQLCWDSGYRKVVIKHILCESNACADVLAKMGAVSNSHRIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3W8</accession>
    <name>A0A392N3W8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0015472</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027496">
        <property type="protein sequence ID" value="MCH94510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3W8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8073" checksum="BC6D0B72BB0B2A7C" modified="2018-12-05" version="1">MKFLKNSLRANGISPGAKTHVLKLEATGKFAWGEFIFSWGENVIVLCIRVLSCIHLGQKPCVWGENAGNKVATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5F3</accession>
    <name>A0A392N5F3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glucose-6-phosphate 1-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">A2U01_0015349</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027223">
        <property type="protein sequence ID" value="MCH94389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5F3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009051">
        <property type="term" value="P:pentose-phosphate shunt, oxidative branch"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429:SF16">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucose-6-phosphate dehydrogenase C-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH94389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11546" checksum="2397AA263F9DB04C" modified="2018-12-05" version="1" fragment="single">MEKPISVRPEHIRDEKVKVLESVLPIKDEDIVLGQYEGYRDDPTVPDNSNTPTFASVILRVHNERWEGVPFILKAGKALESRKADIRIQFKDVPGDIFKCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N948</accession>
    <name>A0A392N948_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-binding and zinc-finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0017294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032031">
        <property type="protein sequence ID" value="MCH96310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N948"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH96310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="19211" checksum="5D46E1FE0A5C68E7" modified="2018-12-05" version="1" fragment="single">GTFGGEVRHAEISTQDEMDNLPAEVLPPFVELDSLFADCDLLNDSETLDNEYMDFESQTDFSLSELLNLDNNSQFEEADVPRDLSGFAKDSCTLGVPEECATTSLQNNQEPTISSHRNVHNCSQCSQTEPAPDLSSDFGPAEINGMQGAEIFLVTDHGNFPRASGPNFDRVILLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA76</accession>
    <name>A0A392NA76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyadenylate-binding protein RBP45-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">A2U01_0016998</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031287">
        <property type="protein sequence ID" value="MCH96015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="6"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="12012" checksum="D89874FFF11140CF" modified="2018-12-05" version="1">MTSQQPCIQVCRLDPHVTEDHLRQDFSQYGELVYVKIPLSCKSGFVQFSDWSCAKEACRVLSEKYSLQWIRSTKEDLASFEHDEFLYLARIHKWRVGLINNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAG8</accession>
    <name>A0A392NAG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0017457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032399">
        <property type="protein sequence ID" value="MCH96471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF40">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RGA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="22003" checksum="AAA4FAA586BA394E" modified="2018-12-05" version="1">MDTLTALESLFLLRLPKLELSLCEGAFLPPKLQSFFINYVSIKVPPIIEWGLQRLTALSELSIGGDDDVVHTLLTERMLPISLVSLTITHLTEMKCIDRNGLRHLSSLEKLEFEYCLGLESLAEVVLPSSLKTLKFNHCPRLESLPEDRLPSSLKLLRIDRCPVLEARYEYESGKHWSNIVHIPIIEINGKVTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEM1</accession>
    <name>A0A392NEM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Patellin-2-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0018007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033874">
        <property type="protein sequence ID" value="MCH97014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00170">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.525.10">
        <property type="entry name" value="CRAL-TRIO lipid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001251">
        <property type="entry name" value="CRAL-TRIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036865">
        <property type="entry name" value="CRAL-TRIO_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044834">
        <property type="entry name" value="PATL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45932">
        <property type="entry name" value="PATELLIN-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45932:SF27">
        <property type="entry name" value="PATELLIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00650">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00516">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52087">
        <property type="entry name" value="CRAL/TRIO domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50191">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRAL-TRIO" evidence="1">
        <location>
            <begin position="1"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15994" checksum="44720BE833C33D7F" modified="2018-12-05" version="1" fragment="single">GHPVYYNVFGEFEDKELYQKTFSDDEKRTKFIRWRIQSLEKSIRKLDFTPSGISTIVQVNDLKNSPGLGKKELRQATNKALQLLQDNYPEFVAKQVFINVPWWYLAFSRMISAFLTQRTKSKFVFAGPSKSADTLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHB1</accession>
    <name>A0A392NHB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020268</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039817">
        <property type="protein sequence ID" value="MCH99256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="21317" checksum="E3C46EEFFEFE1319" modified="2018-12-05" version="1" fragment="single">SSALINAAHRFDHKGKGAISNSQFKSSNRQCTFCHRSGHTVDFCYQKHGHPSFNKGKSSVNAANTDVVLPPTNPSHALLEEGSSSGVNSSFSQEQFDQFMAMLQHANLLAPSQSAIPSSSSNQVTITPIDDFMSLLHFEANASNLEKGKLEENILPSAPSLALWSLAQEKGRLEENILPSAPSSDWLSPAQARDQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIX8</accession>
    <name>A0A392NIX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone-lysine N-methyltransferase EZA1-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0020861</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041500">
        <property type="protein sequence ID" value="MCH99846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046976">
        <property type="term" value="F:histone H3K27 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031507">
        <property type="term" value="P:heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045318">
        <property type="entry name" value="EZH1/2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747:SF14">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE EZA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10791" checksum="09B900607042FFAB" modified="2018-12-05" version="1">MLGFSYWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEISSYMHDGGVSMPYRSIIAASSIMNDSGKIDTECTVSLQAFLFPSSFTLHSHVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJW6</accession>
    <name>A0A392NJW6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040640">
        <property type="protein sequence ID" value="MCH99559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="110"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="250" mass="28621" checksum="81858271FE7DDBB4" modified="2018-12-05" version="1">MVEATNLDPREEFQDMRVNPIEELESIQIGEAVHQTTSLGTHLGEKEKDKIISILKKNVDLFAWKPSDMPGIDENIITHKLAISLNSKPVSQRKRKMREERRTTIDEEANGKWRMCVDFTDLNKACPKDPYPLPSIDRLIDGALGYKTLSFMDTYSGYNQIKMNALDAPHTAFMSNTCNYHYKVMPFGLKNAGATYQRLMDRVFAQQIGKNLEVYIDDMVVKTTREGSHHEDLEDILASELRPTRKSVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKN8</accession>
    <name>A0A392NKN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Telomere length regulation protein TEL2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043269">
        <property type="protein sequence ID" value="MCI00457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051879">
        <property type="term" value="F:Hsp90 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042162">
        <property type="term" value="F:telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051083">
        <property type="term" value="P:'de novo' cotranslational protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051970">
        <property type="entry name" value="TEL2_Regulation"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15830">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15830:SF10">
        <property type="entry name" value="TELOMERE LENGTH REGULATION PROTEIN TEL2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10343" checksum="0B8500450C52FE54" modified="2018-12-05" version="1" fragment="single">IAREFGSPSKSKGFTDEWMKPNVSRIAQIVASIPDKARMNSPTSLSSQQIIVQLLSLEEEREAIDTSDEIDKNGALLFIGETFSRICRRGSAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNP6</accession>
    <name>A0A392NNP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transmembrane protein 131-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0022468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046153">
        <property type="protein sequence ID" value="MCI01443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039877">
        <property type="entry name" value="TMEM131-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22050">
        <property type="entry name" value="RW1 PROTEIN HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22050:SF0">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 131 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="17971" checksum="D301FC89AFBC5DF1" modified="2018-12-05" version="1" fragment="single">VTETADVDELVNGNWMSQGTTDAMSVLVDDEVLFPMVQVGSYVSRWITVKNPSHHPVTVKLILNSEEIIDDCRGPDDIFPNFSSGNLVIDEVISAAKYGFSVPGSAVTEAYVHPYDYATLGPIHFYPSKRCGWNGSALIRNNLTGVESIPLRGIGGLSSLALLESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUA2</accession>
    <name>A0A392NUA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0023793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050090">
        <property type="protein sequence ID" value="MCI02759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="15040" checksum="26E3331C8275363D" modified="2018-12-05" version="1">MANPSLRELKRKIYAADDDVSILRKGKRNLDKDRIRRTLKKFEDCDPDVLEERHNRGLKAVSDPTKYFRTFTPPVEVELSDLLNFKNSSKCIPPRTFKCIFNSYEQESKSTDANHDSKDHVSHDSKDHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUX5</accession>
    <name>A0A392NUX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052771">
        <property type="protein sequence ID" value="MCI03621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3936" checksum="020B69FF85B9D152" modified="2018-12-05" version="1" fragment="single">MNVKRWKGYLLEIAQQLLGEVCSKETPGEVSKSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXP6</accession>
    <name>A0A392NXP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">OTU-like cysteine protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0024907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053514">
        <property type="protein sequence ID" value="MCI03866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="20140" checksum="F9040836E2825489" modified="2018-12-05" version="1" fragment="single">MAPTPNPPKEILYIDQMPLFMHPYIDDIIDVDGDGYCGYRVVVVDQNKGEDDYNLIRIVMIRELNLNRNRYKSLYGSERHLNYIRDALYPPQKTKSSYGVAPREKWLTFPDMGHIIATCYNKNGCPLPPTCLEWRNHRDEEAAAWEYSFMDRQSEFVELMDIERGPKASNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1E7</accession>
    <name>A0A392P1E7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative peptide/nitrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">A2U01_0025672</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056000">
        <property type="protein sequence ID" value="MCI04625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1E7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI04625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20432" checksum="33164CF9345DDCD8" modified="2018-12-05" version="1" fragment="single">MTLLTIAVSLKSLKPTCTNGVCNKASTSQIAFFYAALYTMAIGAGGTKPNISTFGADQFDDFNPHEKELKASFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVRTSKSPAKDIVRVLIAAFKNRKLQLPSNPSDLHEFQMEHCVIRGKRHVYHTPTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2Q6</accession>
    <name>A0A392P2Q6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0027392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061521">
        <property type="protein sequence ID" value="MCI06333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2Q6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="91"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19599" checksum="15755B7C0521CF87" modified="2018-12-05" version="1">MESPAAPVVRALKKLLSKGSEHLINEVESFSSLVDDLRGYSWRLSWQEAHFLRCLLRLREELVDGVPIIFSVEDAERRHREVKSALFDQTCLDLKGELAKLTEKKREIQSDIKEDIAKLLEKRKILLELKSKQASLGGAIERLLEDLEMVKTCKLNIEGMCYEAEEAAKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7K6</accession>
    <name>A0A392P7K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arsenical pump-driving ATPase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064749">
        <property type="protein sequence ID" value="MCI07256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043529">
        <property type="term" value="C:GET complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071816">
        <property type="term" value="P:tail-anchored membrane protein insertion into ER membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="ArsA/GET3_ATPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803:SF0">
        <property type="entry name" value="ATPASE GET3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA/GET3 Anion-transporting ATPase-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15797" checksum="82960134B1C81C98" modified="2018-12-05" version="1" fragment="single">LRQTIASATSAIKSVFGQEKNPQDAADKLEKLRERMIKVRDLFRDTDSTEFVIVTIPTVMAVNESSRLSASLKKENVPVKRLIVNQILPPSASDCKFCAMKRKDQTRALDVIQSDPELSSLSMIQAPLVDVEIRGVPALKFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P991</accession>
    <name>A0A392P991_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067411">
        <property type="protein sequence ID" value="MCI08000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P991"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9831" checksum="6A2BFC6C58BC3E26" modified="2018-12-05" version="1">MSCDEHGEERAVILSKARNELEYDFGQLNCWVLGSQYGGENRIYGLGFTVISGFLDIRVHNDVRRKLIAGNQLEERNDLWETIALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PED6</accession>
    <name>A0A392PED6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin-like domain-containing CTD phosphatase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076310">
        <property type="protein sequence ID" value="MCI10458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PED6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090364">
        <property type="term" value="P:regulation of proteasome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051658">
        <property type="entry name" value="UBLCP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48493">
        <property type="entry name" value="UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48493:SF1">
        <property type="entry name" value="UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9672" checksum="AA13BA987E4B58D3" modified="2018-12-05" version="1" fragment="single">AVYAEYDIMIWSATSMKWINLKMSQLGVLDNPNYKITALLDHLAMITVQTASRGVFDCKPLGLIWAQFPELTEKFTFLSGEKKDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG91</accession>
    <name>A0A392PG91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Single-stranded DNA-bindig protein WHY2 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Whirly family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078912">
        <property type="protein sequence ID" value="MCI11113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.31.10">
        <property type="entry name" value="Transcriptional Coactivator Pc4, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009044">
        <property type="entry name" value="ssDNA-bd_transcriptional_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013742">
        <property type="entry name" value="Whirly"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31745">
        <property type="entry name" value="SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31745:SF1">
        <property type="entry name" value="SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08536">
        <property type="entry name" value="Whirly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54447">
        <property type="entry name" value="ssDNA-binding transcriptional regulator domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0809">Transit peptide</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI11113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9699" checksum="3547027275930BE7" modified="2018-12-05" version="1" fragment="single">RFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLIVVNTVLNTKDNFSVPVTTAEFAVMKTACSVCFFST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR52</accession>
    <name>A0A392PR52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Receptor-like protein kinase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092897">
        <property type="protein sequence ID" value="MCI14563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051564">
        <property type="entry name" value="LRR_receptor-like_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48055">
        <property type="entry name" value="LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48055:SF31">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN KINASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14206" checksum="06E0492960349C4F" modified="2018-12-05" version="1" fragment="single">MMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANDAKVLATSSNAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PS17</accession>
    <name>A0A392PS17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091787">
        <property type="protein sequence ID" value="MCI14289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PS17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13168" checksum="80F70CAD1ECF533A" modified="2018-12-05" version="1" fragment="single">NTSPTSSLNSTGRKSDGDRRSGSSDRWRGMRNEEMEERRAKGLCFKCGDSGASHSFISPELATALGLTVTPTTVKRIKLGDGHRVMSEVRRFRCGSGCILVKHLGESYYGLERFVNAILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PU25</accession>
    <name>A0A392PU25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Salicylate O-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097126">
        <property type="protein sequence ID" value="MCI15593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PU25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.270">
        <property type="entry name" value="Methyltransferase, alpha-helical capping domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005299">
        <property type="entry name" value="MeTrfase_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042086">
        <property type="entry name" value="MeTrfase_capping"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31009">
        <property type="entry name" value="S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03492">
        <property type="entry name" value="Methyltransf_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI15593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11276" checksum="FEF490C360368041" modified="2018-12-05" version="1" fragment="single">GEIEEEKLDSYDVHFYAPSREEIEDEVTKEGSLKLERLEMFEIDKKEQGKESYGTEVSKAVRAIQESMISNHFGEKILDNLFENYAILVDEEIAKED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0P4</accession>
    <name>A0A392Q0P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-type lectin-domain containing receptor kinase S.4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107568">
        <property type="protein sequence ID" value="MCI17911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0P4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050528">
        <property type="entry name" value="L-type_Lectin-RKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27007">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI17911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12596" checksum="1AA1AD356CE406A3" modified="2018-12-05" version="1" fragment="single">MNAKLGDFGLAKLYDHGENPSTTRVVGTMGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEAKALPEELVLVDWVWDKWRVGEVMEVVRYLEGEVKLPEVDVFAGKKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q103</accession>
    <name>A0A392Q103_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106063">
        <property type="protein sequence ID" value="MCI17572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q103"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14272" checksum="B3744F8261A05B38" modified="2018-12-05" version="1" fragment="single">IAKENDSISEDIIKNAVTATEDGFMTLVRRSFGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGRSNKIVAKQLTKEHNACKADIRRELKSLHPEDSQIVVMKHGTWRIKGIIQVFISFSLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3W3</accession>
    <name>A0A392Q3W3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Caffeic acid 3-O-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">A2U01_0039949</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111860">
        <property type="protein sequence ID" value="MCI18794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3W3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008171">
        <property type="term" value="F:O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016461">
        <property type="entry name" value="COMT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001077">
        <property type="entry name" value="COMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11746">
        <property type="entry name" value="O-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00891">
        <property type="entry name" value="Methyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51683">
        <property type="entry name" value="SAM_OMT_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="O-methyltransferase C-terminal" evidence="4">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI18794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="11986" checksum="AE9AA543B7CBFDAF" modified="2018-12-05" version="1" fragment="single">YHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGIFFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q501</accession>
    <name>A0A392Q501_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0039955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111891">
        <property type="protein sequence ID" value="MCI18800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q501"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4325" checksum="8CAEF5A0EDACD8A4" modified="2018-12-05" version="1" fragment="single">MAARTNAQIAEALATMANIMARDNQPGREDEMRLERFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7F0</accession>
    <name>A0A392Q7F0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119304">
        <property type="protein sequence ID" value="MCI20323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7F0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16734" checksum="56433B79F729AE17" modified="2018-12-05" version="1" fragment="single">AQSLISSKTSSHSSSSVVRPVHSDGIKDNLREVVVTDGVTRKLPSNISSCRLKASSVYSAGEILCCSSINSSDIRNCNKIFLRKYDREVASKVWNGALELEVEVTSLAEAVTKNLGAQGNTEEECIQEIQENEKRDVEEGIRREQHQFIHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLM5</accession>
    <name>A0A392QLM5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010146601">
        <property type="protein sequence ID" value="MCI25321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="3"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="111"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI25321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15434" checksum="A61E8F479C52DCEF" modified="2018-12-05" version="1" fragment="single">MGRELGELKQGRSSVAEYTRKFNELVRFSSDVNGALTERAKMDKYRYGLRGDIAYAVSLQNIANFGDLIHKAYSAEATIDFANKERAAVNQQRKDFGKYKQQLKVKEFSSKGKQVQSSQTSRPCPECGKPHSGECMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSD4</accession>
    <name>A0A392QSD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153826">
        <property type="protein sequence ID" value="MCI26530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4981" checksum="C106160944B9AA83" modified="2018-12-05" version="1" fragment="single">ASGIEQGRKEAFMQDSRVPKIVSGSACRCCQKRVSTVKNRCAAPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYY4</accession>
    <name>A0A392QYY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167655">
        <property type="protein sequence ID" value="MCI28736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5338" checksum="DE0A0F72372FA7B3" modified="2018-12-05" version="1" fragment="single">TEAGRSLGVEKDGWTKGDIGIEKEDGYHKPARPEAPKGVDERTMSGQRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU01</accession>
    <name>A0A392RU01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010276335">
        <property type="protein sequence ID" value="MCI40131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7849" checksum="1BFE8C6FE82F9E3D" modified="2018-12-05" version="1" fragment="single">MASRTPPKGETHFDQCKYELKYLVQLNSSRDEPTKKEEGVEKMGGVKLRLSLNYPSNPKDINKGQDIPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0N6</accession>
    <name>A0A392S0N6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nudix hydrolase 14 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010304543">
        <property type="protein sequence ID" value="MCI42441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0N6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6380" checksum="9153D6906C25E742" modified="2018-12-05" version="1" fragment="single">PAGMLEDDKGDIVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGCTVFPSPVYIELFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S125</accession>
    <name>A0A392S125_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">General negative regulator of transcription subunit</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010300218">
        <property type="protein sequence ID" value="MCI42097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S125"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7507" checksum="7694B732ED93F719" modified="2018-12-05" version="1" fragment="single">GYGLIRRDNGFCYGACEIAEYSFYPLWEVGKANDGLTSVDSGTVSEAAAVSGTVFSPSVVVPGFSKDAGIFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3W4</accession>
    <name>A0A392S3W4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010316486">
        <property type="protein sequence ID" value="MCI43379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3W4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3079" checksum="A102600C4FD25CA2" modified="2018-12-05" version="1" fragment="single">MRMEEEYSPTRGMGTGMENILDGGAGAMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMR5</accession>
    <name>A0A392SMR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010401748">
        <property type="protein sequence ID" value="MCI49474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11083" checksum="AF2C68B52BA854C9" modified="2018-12-05" version="1" fragment="single">GSGGLHRVHPGVPAELFVLPPTLGHAKLFDGQTQLVISEPEKAILEDMGAESIKNEIANSSVAVMKLLEIVSFLNGRECQYLAERDVARKKLEGVGLKYNEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPU0</accession>
    <name>A0A392SPU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010413116">
        <property type="protein sequence ID" value="MCI50214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3215" checksum="F4637541B5E50E02" modified="2018-12-05" version="1" fragment="single">SGINGFSPLPIAVARDRTVVLPIKFSANHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIY6</accession>
    <name>A0A392TIY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010590385">
        <property type="protein sequence ID" value="MCI60922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="7213" checksum="A6ECF24AA8E7E556" modified="2018-12-05" version="1" fragment="single">GVRPAYGSGGGGGFAHHNHHHDFHHHDGMMGGDIVGAGGGGGAFDGGGGYGGGTGGGDGGGGGGGIGGGDGGGGGGGGTGGGVGAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL90</accession>
    <name>A0A392TL90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amino acid permease-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010589989">
        <property type="protein sequence ID" value="MCI60890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044566">
        <property type="entry name" value="RMV1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45826:SF2">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45826">
        <property type="entry name" value="POLYAMINE TRANSPORTER PUT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI60890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9864" checksum="84AE34F556EBBF58" modified="2018-12-05" version="1" fragment="single">YFFPLLIGTGAVPVQRELWTDGYFADIAMIIGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAERGMLPEFFTKRSRHGTPLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTG3</accession>
    <name>A0A392TTG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010647446">
        <property type="protein sequence ID" value="MCI64004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3956" checksum="E1F89E24ABE178BE" modified="2018-12-05" version="1" fragment="single">ARYTAVGDATARFTVVDDAMARFAVVGNEGNCRQCGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYL5</accession>
    <name>A0A392TYL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NADP-dependent alkenal double bond reductase P2</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010686228">
        <property type="protein sequence ID" value="MCI65978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032440">
        <property type="term" value="F:2-alkenal reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045010">
        <property type="entry name" value="MDR_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43205:SF7">
        <property type="entry name" value="PROSTAGLANDIN REDUCTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5189" checksum="6ACC16BAE2C50DF6" modified="2018-12-05" version="1" fragment="single">EHTDVPLSYYTGILGMPGMTAYAGLFEVGTPKKGENVFVSAASGAVGQLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJV2</accession>
    <name>A0A392UJV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010849101">
        <property type="protein sequence ID" value="MCI73913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006502">
        <property type="entry name" value="PDDEXK-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31579:SF84">
        <property type="entry name" value="F21O3.6 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31579">
        <property type="entry name" value="OS03G0796600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04720">
        <property type="entry name" value="PDDEXK_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8202" checksum="D824A0F32BE9564A" modified="2018-12-05" version="1" fragment="single">KLCLRSGGLSIPPWRKNRYMQNKWFGPYRRTTNTVQGNPVPAVSSFSGAKCRLVGFNNAVSETRRGGAFVRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UNR5</accession>
    <name>A0A392UNR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010877654">
        <property type="protein sequence ID" value="MCI75221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UNR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI75221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6168" checksum="3904058342466937" modified="2018-12-05" version="1" fragment="single">MPLTQLTRKNQALLWDKNCEESFQELKRRLTTTPVLTLPDAKEPFVVYCDASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URC0</accession>
    <name>A0A392URC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010876611">
        <property type="protein sequence ID" value="MCI75174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8617" checksum="0BDCEDD0943ED22E" modified="2018-12-05" version="1" fragment="single">SDTADVGIVAATPKRKGVDKEKIEKDVEGKKKKSEVRASGVATKERITKKPRTQKKKAPKVVRQLVIQEEDEEETDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URQ2</accession>
    <name>A0A392URQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">A2U01_0099777</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010952148">
        <property type="protein sequence ID" value="MCI78507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI78507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4913" checksum="067958927BE99353" modified="2018-12-05" version="1" fragment="single">MQPRVADFLKLPIDNIPQFVVTVGKGQTIQCEGHCNDVPVSMASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USD3</accession>
    <name>A0A392USD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">A2U01_0100199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010961977">
        <property type="protein sequence ID" value="MCI78928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI78928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5089" checksum="9D95513BE83C0EF3" modified="2018-12-05" version="1" fragment="single">TRAQEEAQRAAASASTPTGHGGLMFTYGELGFDDSPGFHNFTDPPTSGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYL3</accession>
    <name>A0A392UYL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011011001">
        <property type="protein sequence ID" value="MCI81106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8368" checksum="23B8F77FC85A579A" modified="2018-12-05" version="1" fragment="single">IGCTLLPYDQERTSQGEHIPSIEISRRNLRGIIGRWWMFYNSREFNPSHHRNQQFSPRSQEGILCFANYAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0E9</accession>
    <name>A0A392V0E9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011026391">
        <property type="protein sequence ID" value="MCI81736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0E9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8126" checksum="A89A761D5B7660EB" modified="2018-12-05" version="1" fragment="single">AAARRCFEAATKNLSTVTTPKKKKAEHPAPAVNSVGSPNPVDLDARLTKKEREEEKLKDKEPGTEKIYRPIPDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6E8</accession>
    <name>A0A392V6E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011042656">
        <property type="protein sequence ID" value="MCI82415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4445" checksum="A77D595FF156B389" modified="2018-12-05" version="1" fragment="single">ESLRSPRATSQQRHRSARDPETRNRWWRGPLNQCTPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8F6</accession>
    <name>A0A392V8F6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011095159">
        <property type="protein sequence ID" value="MCI84608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="4"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5827" checksum="8D7C53E9913DCF92" modified="2018-12-05" version="1" fragment="single">MPGSDDPALAEACAMYQAVQLAIDCCFHEVVFESDNNRTLIDLVKEGNRIPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEF7</accession>
    <name>A0A392VEF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011149082">
        <property type="protein sequence ID" value="MCI86766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3107" checksum="2CF99D8A53EFA0D2" modified="2018-12-05" version="1" fragment="single">GGSSAVKFRLGKIDGIVVLEPNVDDPPAAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGY4</accession>
    <name>A0A392VGY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011131694">
        <property type="protein sequence ID" value="MCI86095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2274" checksum="B62F4495034520B1" modified="2018-12-05" version="1" fragment="single">DDSGCAGGTVGGADTSSGGIVGTGFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLR1</accession>
    <name>A0A392VLR1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011191291">
        <property type="protein sequence ID" value="MCI88372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5772" checksum="3D25850E3C80F224" modified="2018-12-05" version="1" fragment="single">MTWYKSLPPGFIDSWAESCRVFTAHFTASRRQPKTEAALKAIVQREDETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW17</accession>
    <name>A0A392VW17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011304995">
        <property type="protein sequence ID" value="MCI92578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6111" checksum="E4D89365C669312D" modified="2018-12-05" version="1" fragment="single">MAAAARTNTLIVEALATLTNIVAMDNQPGRDVEMRLERFMKQKPPTFTGGYNLDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWX4</accession>
    <name>A0A392VWX4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011313383">
        <property type="protein sequence ID" value="MCI92874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWX4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2595" checksum="410C02544BC73715" modified="2018-12-05" version="1" fragment="single">TTEGIFFIENDHEFCDCSRLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W020</accession>
    <name>A0A392W020_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011319394">
        <property type="protein sequence ID" value="MCI93099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W020"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="7132" checksum="949900E273FEB007" modified="2018-12-05" version="1" fragment="single">RRDFERRLVEERKRLTAREEAIERKRLRLIECGGRLFRSRRDVCVEGKVGRVGWYLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC83</accession>
    <name>A0A392WC83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011442376">
        <property type="protein sequence ID" value="MCI97409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3260" checksum="D9E4A116EFFD9722" modified="2018-12-05" version="1" fragment="single">VRALVGIDARYAVISMTDELPEKANMEVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WDT0</accession>
    <name>A0A392WDT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011427112">
        <property type="protein sequence ID" value="MCI96885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WDT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7378" checksum="FA5B806CA1F94527" modified="2018-12-05" version="1" fragment="single">PKKRKDSSDSEDDQPVSEDKATEEASTAAAAPMKKKKTDKDKVEVTVKEKEKRKRATVSESDKEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7L8</accession>
    <name>A0A392N7L8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7 11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010030586">
        <property type="protein sequence ID" value="MCH95751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18787">
        <property type="entry name" value="SF2_C_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000031">
        <property type="entry name" value="Eukaryotic initiation factor 4A-III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47958">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE DBP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="44"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH95751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="23665" checksum="1282323C9C874E2F" modified="2018-12-05" version="1">MLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVIIEELPSNVAELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPN0</accession>
    <name>A0A392NPN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Transcription factor GAMYB-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045908">
        <property type="protein sequence ID" value="MCI01344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000001">
        <property type="entry name" value="MYB-related transcription factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47995">
        <property type="entry name" value="TRANSCRIPTION FACTOR MYB33-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47995:SF18">
        <property type="entry name" value="TRANSCRIPTION FACTOR MYB65"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Myb-like" evidence="8">
        <location>
            <begin position="75"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="HTH myb-type" evidence="9">
        <location>
            <begin position="77"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Myb-like" evidence="8">
        <location>
            <begin position="128"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="HTH myb-type" evidence="9">
        <location>
            <begin position="132"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="195"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="7">
        <location>
            <begin position="57"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI01344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="26447" checksum="17E9D0205663EC25" modified="2018-12-05" version="1" fragment="single">MSSTSSVDDGHKPLKRSWSSLSSEDYSHKTLKRNWSSSSSLDDDCKRIKPSQSLLSGEEDDDEDDQGGNSGGGEEGSLKKGTWTSAEDEILVEHVKKYGLGNWNAVQKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKADQENGDANEASQCDETENYNIPVVEFKDYKFHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NS10</accession>
    <name>A0A392NS10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047603">
        <property type="protein sequence ID" value="MCI01939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NS10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6430" checksum="0A0FA3882A799C3A" modified="2018-12-05" version="1">MSLKMEMKLIRAKKRDCQVTESATQESRLMLSSSACAQDLGAPLCSGPASALCSGPASALGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZJ1</accession>
    <name>A0A392NZJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057836">
        <property type="protein sequence ID" value="MCI05197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="27084" checksum="3C6A168B408E7712" modified="2018-12-05" version="1" fragment="single">VLGTVYDVWVVEERCGCMEEDQWEVDEGYRSPGMLLAPEGEALAVAGNKKGERTSNFSSQSPMVLMDDKKVSGGPSLTRHVEREEDKTFQISSCEDIGATFDVRGTIEEVGPIVGQSQLLEGDTQVLGVCTNPFHPLQDWEEEVRLGQKVGQEKIGLFGPTVTNWIPFVEEGYEVQREVESSFPAHAVLEKGAGSEYLNSTDGVHYAEVTSDLYGSLVDTSHVVGRPLKRTSKRKPHKDFRPLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1U5</accession>
    <name>A0A392P1U5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycerate mutase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059448">
        <property type="protein sequence ID" value="MCI05694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47580">
        <property type="entry name" value="PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47580:SF1">
        <property type="entry name" value="PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12501" checksum="F2AB38EB2090BEA4" modified="2018-12-05" version="1" fragment="single">MCVMVPMFEMVVQIYTSDSISPKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYFGDTVVIVSPDSDNLSILQAGLVGLDLRRHRDLSFAPGEVRYVDTNDIPTYKQPPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC72</accession>
    <name>A0A392PC72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter C family member 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073543">
        <property type="protein sequence ID" value="MCI09688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050173">
        <property type="entry name" value="ABC_transporter_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223:SF367">
        <property type="entry name" value="ABC-TYPE XENOBIOTIC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24223">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="28"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI09688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="19590" checksum="081C6B0895C101AB" modified="2018-12-05" version="1" fragment="single">MDVERYQEALHRSSLMKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARAFYQNADIYLLDDPFSAVDAHTATNLFNEYILEGLSGKTVLLVTHQVDFLPAFDSVLLMSNGKILQAAPYHDLLISSREFTDLVNAHKETAGSGRLLEVTSSQRHASSDREIKKTFTEKPFKALNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF11</accession>
    <name>A0A392PF11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072723">
        <property type="protein sequence ID" value="MCI09455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10413" checksum="55B49F72C49C6C84" modified="2018-12-05" version="1" fragment="single">LVDPPTLRDASRRSCACRGKGVTIYQWDSSLKDNNLRSMSSWTLLVHGLSRVPPEFHETCFKLICKYRETVLAVLRLEEGESGRYMSFMGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKI5</accession>
    <name>A0A392PKI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084745">
        <property type="protein sequence ID" value="MCI12578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10936" checksum="A34D4129B79BC7CB" modified="2018-12-05" version="1" fragment="single">MAPKRLCRVGSSSDPHHFLDANKKEHYQLIKTKGGVQERSIDFPSITFLPRMQEIAEGYGWMEFNSMIGDCIISSVEEFYANALGRPDDGYTSYVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRJ4</accession>
    <name>A0A392PRJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091083">
        <property type="protein sequence ID" value="MCI14119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2647" checksum="3092AE91D1C51088" modified="2018-12-05" version="1" fragment="single">RVREACVSDAEAATIVAEVLWGTCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW11</accession>
    <name>A0A392PW11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Metal transporter Nramp5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NRAMP (TC 2.A.55) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095093">
        <property type="protein sequence ID" value="MCI15115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PW11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015086">
        <property type="term" value="F:cadmium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034755">
        <property type="term" value="P:iron ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001046">
        <property type="entry name" value="NRAMP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706:SF77">
        <property type="entry name" value="METAL TRANSPORTER NRAMP5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706">
        <property type="entry name" value="SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01566">
        <property type="entry name" value="Nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00447">
        <property type="entry name" value="NATRESASSCMP"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI15115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9278" checksum="4036FB23051DB471" modified="2018-12-05" version="1" fragment="single">MEPVRKLELLISILVFVMAACFFGEMSYVKPPASGVVEGMFVPKLNGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1I5</accession>
    <name>A0A392Q1I5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107703">
        <property type="protein sequence ID" value="MCI17938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1I5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="56"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="8078" checksum="5A403C06E53A3969" modified="2018-12-05" version="1" fragment="single">MAASSLSSSSDSSSHRRRRHHRTRRDRDKDSLKIKKKSKSHSHTKRRRKHHRYSSDSDSYSSSSLSDHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q860</accession>
    <name>A0A392Q860_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peroxidase 11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114841">
        <property type="protein sequence ID" value="MCI19445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q860"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8736" checksum="62ED726D01CDDBD1" modified="2018-12-05" version="1" fragment="single">KDSVTASFELANTNLPTPDESLVSIIPKFFYQGLSVTDMVLRWTTLISDTKVLNCGCGRGNGCDYCECGHCGRCNANAAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QA51</accession>
    <name>A0A392QA51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119841">
        <property type="protein sequence ID" value="MCI20436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QA51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6840" checksum="51F7AC2B9C85CA84" modified="2018-12-05" version="1" fragment="single">MCVEDTCITVSWVPPCEWPESEISPEGCHLSAMDKDVMDLLRRLVIRVMDDVMTRAYHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHR4</accession>
    <name>A0A392QHR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136363">
        <property type="protein sequence ID" value="MCI23489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11472" checksum="E09A2658C3C67287" modified="2018-12-05" version="1">MHNDMVSTCIPTLVTQADNDFLCKIPSTSEVKEAIFGMNXDGAPGPDGFGGHFFSSISGMSWLLVWSRQRKNSLLMIRHDCSKEILKSSAKLSILMRCLADPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSR2</accession>
    <name>A0A392QSR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ALA-interacting subunit 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CDC50/LEM3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156923">
        <property type="protein sequence ID" value="MCI27029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005045">
        <property type="entry name" value="CDC50/LEM3_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10926:SF0">
        <property type="entry name" value="CDC50, ISOFORM A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10926">
        <property type="entry name" value="CELL CYCLE CONTROL PROTEIN 50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI27029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8535" checksum="C06C2D4B48EEEE8C" modified="2018-12-05" version="1" fragment="single">SKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLLASRKVVEIVYRYESECLSKVPNKLAYIQNPTTDKTCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSR5</accession>
    <name>A0A392QSR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158687">
        <property type="protein sequence ID" value="MCI27328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4696" checksum="957F2FD0966FCAEC" modified="2018-12-05" version="1">MLMSSLGEIKREKASRIRKFLAPARESQLARWEAGSATMPCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QU51</accession>
    <name>A0A392QU51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010159048">
        <property type="protein sequence ID" value="MCI27392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QU51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5090" checksum="737E886B279D5D31" modified="2018-12-05" version="1" fragment="single">TLPLLGRCGRGCGVDDLVSPSHHGYMDHGLGDVNFCWQPSQDFGSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUA5</accession>
    <name>A0A392QUA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Expansin-B3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160381">
        <property type="protein sequence ID" value="MCI27599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006949">
        <property type="term" value="P:syncytium formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="entry name" value="RlpA-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007112">
        <property type="entry name" value="Expansin/allergen_DPBB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009009">
        <property type="entry name" value="RlpA-like_DPBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31692">
        <property type="entry name" value="EXPANSIN-B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31692:SF5">
        <property type="entry name" value="EXPANSIN-B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03330">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00837">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="Barwin-like endoglucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50842">
        <property type="entry name" value="EXPANSIN_EG45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Expansin-like EG45" evidence="1">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10267" checksum="DF2ECDB8B61F933B" modified="2018-12-05" version="1" fragment="single">GYGSLVDVKPLKARVGAVGPVLYKKGEGCGECYKVKCLDHSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVKGENGQLRNKGEIPVIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUR9</accession>
    <name>A0A392QUR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010161179">
        <property type="protein sequence ID" value="MCI27759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4515" checksum="DF7B9911682E807C" modified="2018-12-05" version="1" fragment="single">IHQKLSIIFISGEETTLCDGSTAAGVQREEEVAELVVGEIKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX39</accession>
    <name>A0A392QX39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010165862">
        <property type="protein sequence ID" value="MCI28452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000299">
        <property type="entry name" value="Piriformospora indica-insensitive protein 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046956">
        <property type="entry name" value="RLP23-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48063:SF52">
        <property type="entry name" value="LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI28452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14651" checksum="0F8D659DC83EB165" modified="2018-12-05" version="1">MATLDEETLPATTIELFTKGQEYNAYEVQRERRTIDLSANNLSGDLPLELFRLVQVQTLNLSHNNLNGTIPKIIGGMKKLESLDLSNNKFCGEIPQSMALLNFLEYLNLSYNNLNGKIPIGTQLQTFDASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0V5</accession>
    <name>A0A392R0V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172761">
        <property type="protein sequence ID" value="MCI29460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14517" checksum="2DBEAC9C1A8AFFBB" modified="2018-12-05" version="1" fragment="single">FLKGRQLVDGVVAVNEAIDFAKKSGKECMILKVDFEKAYDSVDWGFLDYMLRRFGFSSKWRAWMKTCVCGGNLSVLVNGSPTEEIQIRRGLKQGDPLAPLLFLLVAEGLGGLMRRAVEINKFRPFLVGGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1F5</accession>
    <name>A0A392R1F5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010175889">
        <property type="protein sequence ID" value="MCI29934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1F5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17168" checksum="2263947C85B1B4D3" modified="2018-12-05" version="1" fragment="single">MTNMVPGKGIGGEVRQGVSFKQSLAKVDLSTLNADKRKGGLKQPGTRRGLTTTQILEGTMEVAVVEENMKKFEKCWVGKLWDQNDADNIQFKIWMEGFQMVSAVRLGLDMVLLSSMEDDGVRNAVASNKDWWSRCFIEINMSTLVARPRGRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1K2</accession>
    <name>A0A392R1K2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">CASP-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Homodimer and heterodimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the Casparian strip membrane proteins (CASP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010176214">
        <property type="protein sequence ID" value="MCI29984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006702">
        <property type="entry name" value="CASP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04535">
        <property type="entry name" value="CASP_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="Casparian strip membrane protein" evidence="8">
        <location>
            <begin position="20"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI29984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7727" checksum="13486FF6BBF54ADD" modified="2018-12-05" version="1" fragment="single">PPVAIVSTKAIPHPKSGMKKGIAILDFILRLGAIGSTLGAAALMGNNEQILPFFTQFLQFHAQWSDFPMFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1X4</accession>
    <name>A0A392R1X4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA+ ATPase At3g28540-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173319">
        <property type="protein sequence ID" value="MCI29545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1X4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058017">
        <property type="entry name" value="At3g28540-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25568">
        <property type="entry name" value="AAA_lid_At3g28540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase At3g28540-like C-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI29545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6111" checksum="A19B598301200886" modified="2018-12-05" version="1" fragment="single">AENLMPKSVNEDVETSLKNLIKALEKKKMEKQEEKNEDCVETVEDVKENGYIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4V5</accession>
    <name>A0A392R4V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Vacuolar-sorting receptor 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188482">
        <property type="protein sequence ID" value="MCI31613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22702">
        <property type="entry name" value="PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22702:SF1">
        <property type="entry name" value="PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI31613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7949" checksum="5AB659F21F882F46" modified="2018-12-05" version="1" fragment="single">MSMARFVVEKNSLSVTSPDKIKGKQDSAIGNFGIPQYGGSMAGNVVYPKDNNKGCKDFQDQSFKSHPGALPTIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R540</accession>
    <name>A0A392R540_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HAT C-terminal dimerisation domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185538">
        <property type="protein sequence ID" value="MCI31222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R540"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13899" checksum="3E101BC5F7F1A6A5" modified="2018-12-05" version="1">MDPKSWWLVHGVHAPLLQKVALKLLAQPCSSSCSERNWSTYSFINSLRRNKLLPKRAEDLVFVHSNLRLLSRNSPQYNQEETKMWDIAGSEFGSLDDCGILEIADLSLDEPELEDPLTNDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R739</accession>
    <name>A0A392R739_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TOD1/MUCI70 glycosyltransferase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192352">
        <property type="protein sequence ID" value="MCI32057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R739"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006852">
        <property type="entry name" value="TOD1_MUCI70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048354">
        <property type="entry name" value="TOD1_MUCI70_glycTrfase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12956">
        <property type="entry name" value="ALKALINE CERAMIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12956:SF38">
        <property type="entry name" value="HEXOSYLTRANSFERASE MUCI70-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04765">
        <property type="entry name" value="TOD1_MUCI70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TOD1/MUCI70 glycosyltransferase-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9220" checksum="6B76515787839B90" modified="2018-12-05" version="1" fragment="single">MEQCRGIVVASAVFGNFDEINEPKNISEYSKQTVCFLMFVDEETEKYLRSSGRLGASKKIGLWRIIVARNLPYTDARRSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7N6</accession>
    <name>A0A392R7N6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transposase-associated domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192808">
        <property type="protein sequence ID" value="MCI32112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7N6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="76" mass="8630" checksum="3B92F8A15784B80C" modified="2018-12-05" version="1" fragment="single">SPEDVIVHLEKVGFMNGYYVWRHHGEKEPPNINTEFGINMDASSSGAREECDNFGLMQDMVVDAFGVIEKLKKEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8R7</accession>
    <name>A0A392R8R7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutathione reductase cytosolic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010191459">
        <property type="protein sequence ID" value="MCI31955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8R7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5376" checksum="7009D16BC95B541B" modified="2018-12-05" version="1" fragment="single">MARKVLRDDEPDLNKGEVVEGTNFDFDLFIIGAGSGGVRAARFSSNFGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC32</accession>
    <name>A0A392RC32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010206533">
        <property type="protein sequence ID" value="MCI33682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="9" mass="1109" checksum="1DBAF6DB17272724" modified="2018-12-05" version="1" fragment="single">WNLLLEQHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REC2</accession>
    <name>A0A392REC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase V-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010219059">
        <property type="protein sequence ID" value="MCI34983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5868" checksum="16A23209602136D7" modified="2018-12-05" version="1">MFRNHDSVSFLCARQGFALGLTVLVGAIDKIRVGSFLKLVVDLLEVTSSMKGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RES1</accession>
    <name>A0A392RES1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter G family member 28-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010210328">
        <property type="protein sequence ID" value="MCI34085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RES1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043926">
        <property type="entry name" value="ABCG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050352">
        <property type="entry name" value="ABCG_transporters"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041:SF1">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19055">
        <property type="entry name" value="ABC2_membrane_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter family G" evidence="6">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF19055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI34085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7883" checksum="1C56BBDBCF5BFF3B" modified="2018-12-05" version="1" fragment="single">YALFNMFDDLILLGKGGLMVYHGSSKKVEEYFSGLGINVPERINPPDYYIDILEGIAAPDGNSGLRYEDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFA6</accession>
    <name>A0A392RFA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acidic leucine-rich nuclear phosphoprotein 32-related</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the ANP32 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010216402">
        <property type="protein sequence ID" value="MCI34714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000131">
        <property type="entry name" value="acidic leucine-rich nuclear phosphoprotein 32-related protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045081">
        <property type="entry name" value="AN32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11375">
        <property type="entry name" value="ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11375:SF0">
        <property type="entry name" value="ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14580">
        <property type="entry name" value="LRR_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51450">
        <property type="entry name" value="LRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="76"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="86"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="129"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI34714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15526" checksum="D4638F0DC701AC44" modified="2018-12-05" version="1" fragment="single">SDNRIAGGLEFLVQAGLDSLRDLDLSNNRIQFIEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEEEDDEEEEEEEEDDPGSGEIDGGEEDRHLGLNNGHGEGVDVDGVVDADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFD0</accession>
    <name>A0A392RFD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217615">
        <property type="protein sequence ID" value="MCI34842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5767" checksum="CDB443522202CBCF" modified="2018-12-05" version="1" fragment="single">GSSTEDRKVVLLKQLRLGLLLRFAFKLMQLLDLKQGPTRGVAISVRGVISLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGX3</accession>
    <name>A0A392RGX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222815">
        <property type="protein sequence ID" value="MCI35382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2350" checksum="31893B576D0E7CB9" modified="2018-12-05" version="1" fragment="single">MGMAMTARVVIRKTKNIICAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQ57</accession>
    <name>A0A392RQ57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010247381">
        <property type="protein sequence ID" value="MCI37695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQ57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF491">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10912" checksum="776E0C426E110285" modified="2018-12-05" version="1" fragment="single">ESTPYASGVGSIMYGMVCSRPDLSYAISVGGLKYKRTDPRRDALEGYVDADYASNIDTRKSWLGFVFTLFGTAVTWKANQQSVVALSTTRAEYIALVEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RT25</accession>
    <name>A0A392RT25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010266624">
        <property type="protein sequence ID" value="MCI39362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RT25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12041" checksum="3D1D974585EB7A59" modified="2018-12-05" version="1" fragment="single">MEISSKFTNSEFVTGLRKAVKLSGSKDENHIIIEPVNEGEFVTNVNSSEPHFFYMYANVLQTLNLWLPFTAFEGQVLKVMNVAPSQLHPNSRAFIKAFEIMCHGFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZ41</accession>
    <name>A0A392RZ41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010297684">
        <property type="protein sequence ID" value="MCI41898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZ41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3649" checksum="A38816C5998C37DF" modified="2018-12-05" version="1" fragment="single">MDEDVDGELADIENQGFKLRTASPDAAAILRMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1L1</accession>
    <name>A0A392S1L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010308614">
        <property type="protein sequence ID" value="MCI42761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1L1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017404538" evidence="1">
        <location>
            <begin position="21"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6876" checksum="7071C799E318562A" modified="2018-12-05" version="1">MRCARPCAVMSVRLLRLALRAGVSLRGAQYMFVFPARSSGGCAARRLMLRCAQAFKVWVDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4U5</accession>
    <name>A0A392S4U5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010320834">
        <property type="protein sequence ID" value="MCI43689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10519" checksum="09AC3B51FDA8ED96" modified="2018-12-05" version="1" fragment="single">MWGWGTIPMYEIAFQQMGYRVPFTGFETAVFGHLRVSPSQLHPNSMAFLRAFEVTAGFLRIVPTVKLFFHAFGLQRSCPKGEAAKGKIPRGVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5X8</accession>
    <name>A0A392S5X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Ubiquitin 11</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ubiquitin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010315234">
        <property type="protein sequence ID" value="MCI43286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000160">
        <property type="entry name" value="Polyubiquitin-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000009">
        <property type="entry name" value="Ubiquitin-60S ribosomal protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000626">
        <property type="entry name" value="Ubiquitin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029071">
        <property type="entry name" value="Ubiquitin-like_domsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019954">
        <property type="entry name" value="Ubiquitin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019956">
        <property type="entry name" value="Ubiquitin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050158">
        <property type="entry name" value="Ubiquitin_ubiquitin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10666">
        <property type="entry name" value="UBIQUITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00240">
        <property type="entry name" value="ubiquitin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00348">
        <property type="entry name" value="UBIQUITIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00213">
        <property type="entry name" value="UBQ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54236">
        <property type="entry name" value="Ubiquitin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00299">
        <property type="entry name" value="UBIQUITIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50053">
        <property type="entry name" value="UBIQUITIN_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1017">Isopeptide bond</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="Ubiquitin-like" evidence="9">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Ubiquitin-like" evidence="9">
        <location>
            <begin position="67"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008430"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI43286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12605" checksum="80A3C9DB8838E758" modified="2018-12-05" version="1" fragment="single">KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8P5</accession>
    <name>A0A392S8P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010328253">
        <property type="protein sequence ID" value="MCI44265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4025" checksum="98CB7ED3F5DD8FB5" modified="2018-12-05" version="1">MKEKKSEDSGGGEEDGGTVEKHREEGGGVKEERHARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SD66</accession>
    <name>A0A392SD66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010356484">
        <property type="protein sequence ID" value="MCI46367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SD66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="27"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8821" checksum="EFFAE0E5A9F7D1FD" modified="2018-12-05" version="1" fragment="single">MTAQKNVERMEKELQDSTEVSNCDKNIAEWESLIVELSKQIEEYDAKIRAEKLKRANIKTKINTSTHKTIAREANQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SE06</accession>
    <name>A0A392SE06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein SKIP1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010367868">
        <property type="protein sequence ID" value="MCI47141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SE06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9447" checksum="E7C44F80E1534D84" modified="2018-12-05" version="1" fragment="single">MRSCPRVTDDSISKIAVGCPKLRELDISYCYEITHESLVLIGRNCTNLKVLKRNLMNWLDPSQHVGIVPADYLNACPQDGDAEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGQ5</accession>
    <name>A0A392SGQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010381190">
        <property type="protein sequence ID" value="MCI48078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6265" checksum="4814AFE696E02284" modified="2018-12-05" version="1" fragment="single">SLNRHIALCSASCRQARILKSSGDVLESRQARCRQAILGDNDHVKLVCLMALSASKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKD4</accession>
    <name>A0A392SKD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010386535">
        <property type="protein sequence ID" value="MCI48425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4680" checksum="755CAC3B8A3C27DF" modified="2018-12-05" version="1" fragment="single">RPAQLGLRPAQLGLRPANDAVRRSVELMLAASGAADPARGAVDLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLX8</accession>
    <name>A0A392SLX8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010394201">
        <property type="protein sequence ID" value="MCI48985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8427" checksum="5E831F1A700A2751" modified="2018-12-05" version="1" fragment="single">MRCMDEHKVLLSGYVLHDEADHWWGNAKQRLEVGGAIITWARFKREFLTKYFPTDERNRKVIEFMELKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMU1</accession>
    <name>A0A392SMU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010405420">
        <property type="protein sequence ID" value="MCI49717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10771" checksum="F927C183AAAB55B6" modified="2018-12-05" version="1" fragment="single">VEYPTLDEIWPEYPHLTGQFSRLELDQTQILRWYYNLSNIYWVTRYQPLGSRSRCPFLSTGRYVQCPTLDEIWPEVSSIHILLTSFLELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPJ5</accession>
    <name>A0A392SPJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010421980">
        <property type="protein sequence ID" value="MCI50793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4506" checksum="A0EBF4D37CEB63FA" modified="2018-12-05" version="1" fragment="single">NLGSIEKEYSATKEKLEKDIKELKAEYERKLEHLAKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SY09</accession>
    <name>A0A392SY09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010465177">
        <property type="protein sequence ID" value="MCI53569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SY09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7317" checksum="3593A4B5C5200952" modified="2018-12-05" version="1" fragment="single">GGGEVEREGGGFETEEDLIGGRKEEEEDLKRFDEVESFDWCLRKLLVGEGVERVEEAMVVELVSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZF0</accession>
    <name>A0A392SZF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010460737">
        <property type="protein sequence ID" value="MCI53276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4466" checksum="45B244570ACDFD8A" modified="2018-12-05" version="1">MDVEGGYGVWSSRDSKDKAKASGGGGGLFVRKMEEKSNGGCKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2X5</accession>
    <name>A0A392T2X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Albumin-2</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010496947">
        <property type="protein sequence ID" value="MCI55473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2X5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.110.10.10">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036375">
        <property type="entry name" value="Hemopexin-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50923">
        <property type="entry name" value="Hemopexin-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6562" checksum="4E357411A00FB55D" modified="2018-12-05" version="1" fragment="single">MPYHSVDAAFRSSTKNECYVFAKDKYVVFNYGPDEEKKEDIINGPMHISDGFPMLAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T335</accession>
    <name>A0A392T335_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010496564">
        <property type="protein sequence ID" value="MCI55449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T335"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5510" checksum="3919E52DD3CF3BAB" modified="2018-12-05" version="1" fragment="single">MGCFLLILFYSFCRCYSGGPVFSVAVVLAGFSFAGIYFVVVDAFLRWIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6C2</accession>
    <name>A0A392T6C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010504393">
        <property type="protein sequence ID" value="MCI55957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10959" checksum="ECA897F63E24DADD" modified="2018-12-05" version="1" fragment="single">RYCPHYNNAENERSKCVKFENGLRPEIKACIGYQELRQFATLVNKSQIYEEDNKAKYSHYEAQSERRNAGQNHSKSYDVQKGGRKDKQKINTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8H9</accession>
    <name>A0A392T8H9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010528859">
        <property type="protein sequence ID" value="MCI57433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8H9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9321" checksum="63B8DF01FF4C15D2" modified="2018-12-05" version="1" fragment="single">MAQLRGLSDHCPLLLVASEENWGPRPVRMLKCWRDIPGYQLFVRTKWNAMQVAGWGGFVLKEKFKMIKAALKEWHQAHSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9V2</accession>
    <name>A0A392T9V2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-type lectin-domain containing receptor kinase IX.1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010526683">
        <property type="protein sequence ID" value="MCI57304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9V2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF49">
        <property type="entry name" value="OS10G0129200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 4" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Legume lectin" evidence="3">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI57304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7190" checksum="13A482E67FABB970" modified="2018-12-05" version="1" fragment="single">MGLTLDDHALNSTETNPFVAVEFDIFKNSFDPPLEHAGIDINSMISVANVTWLADIKDGKLNEAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBF0</accession>
    <name>A0A392TBF0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010534441">
        <property type="protein sequence ID" value="MCI57757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3531" checksum="CC34AD2A53AEF173" modified="2018-12-05" version="1">MVWRSAQLNQVHQDESLGVARCAGWFGEARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCA5</accession>
    <name>A0A392TCA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010550910">
        <property type="protein sequence ID" value="MCI58739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="6054" checksum="9269355C30DC6DD0" modified="2018-12-05" version="1" fragment="single">MGNKAEIDWVIDEICALFNKKQLRRTWTPHHLYFKFMEFLPNQRKKTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCU8</accession>
    <name>A0A392TCU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrolase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010555030">
        <property type="protein sequence ID" value="MCI58983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4165" checksum="01A74EBD40BE2AAC" modified="2018-12-05" version="1" fragment="single">MKVRIHPPIASRILLPDGRYMAYHDQGVAAGRARFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDH0</accession>
    <name>A0A392TDH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010538586">
        <property type="protein sequence ID" value="MCI57985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7729" checksum="6A2096AC184BD438" modified="2018-12-05" version="1" fragment="single">MFSAVKDEIEHWNLEARNPVKEFLGRPGTDWLKYYGGERPTKIRLGDFKPVARAWGEWVARNLIVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDP1</accession>
    <name>A0A392TDP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010556097">
        <property type="protein sequence ID" value="MCI59042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4169" checksum="B632450D8253CED5" modified="2018-12-05" version="1" fragment="single">MVAGGKILMRAEGISRDEGKEVQLAGLARVVGGKWRMTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDZ0</accession>
    <name>A0A392TDZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010561571">
        <property type="protein sequence ID" value="MCI59339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4268" checksum="3CF590EBD983F439" modified="2018-12-05" version="1" fragment="single">MKKMKILNVDVISTLPPPVVRLLVKSSVLKTGPVIEPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TE96</accession>
    <name>A0A392TE96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010560185">
        <property type="protein sequence ID" value="MCI59262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TE96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7441" checksum="17AD3A894BC4B8C9" modified="2018-12-05" version="1" fragment="single">QQNKSVPVLLARRGLAMTGENKSGAKFLLAMLGDSWRASRYLSPRMARRPLQEHARSLQGSPDDGACS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THQ6</accession>
    <name>A0A392THQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010586464">
        <property type="protein sequence ID" value="MCI60699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5636" checksum="261E68A08D5F77A4" modified="2018-12-05" version="1" fragment="single">VHGAARLSSRIELQEFSAICASRRFILKFLARSGQVLTADATSVVYESHSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIG2</accession>
    <name>A0A392TIG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010590381">
        <property type="protein sequence ID" value="MCI60921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7189" checksum="1BB346F07B1467B6" modified="2018-12-05" version="1" fragment="single">MLSWGLGGQIWVLGFGLVVLVVALPSWSAFSAGFLCVVAGFDVLKMVRVTAALLVLGVLVWPDLGCGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ12</accession>
    <name>A0A392TJ12_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010577303">
        <property type="protein sequence ID" value="MCI60200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI60200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5849" checksum="CC1E0186BD135033" modified="2018-12-05" version="1" fragment="single">MYFVSRVFQGAEVRYQKIEKLALAVVVTARRLRQYFQSHKITVKTDYPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ77</accession>
    <name>A0A392TJ77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter B family member 19-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010582284">
        <property type="protein sequence ID" value="MCI60477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI60477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8985" checksum="203B89469878CE06" modified="2018-12-05" version="1" fragment="single">MEEDGHDDNEMMKNVVRAVPFLKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDIDAMVPALKKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TK91</accession>
    <name>A0A392TK91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010598575">
        <property type="protein sequence ID" value="MCI61368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TK91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7554" checksum="2D9EE0395AAE998C" modified="2018-12-05" version="1">MELQVLRVVASWRQATFLSVARGRQARWWRDSRQLSPVQGRLSVAWWLAVARRACGDMTMSTCLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKV0</accession>
    <name>A0A392TKV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010606674">
        <property type="protein sequence ID" value="MCI61799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5302" checksum="FD9DD53F8048FD67" modified="2018-12-05" version="1" fragment="single">APAAEAKEDDGEQLGEADFQLEEGREVGRSILDGVYIPASTKGDFGNSFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLM3</accession>
    <name>A0A392TLM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010612292">
        <property type="protein sequence ID" value="MCI62069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017295688" evidence="1">
        <location>
            <begin position="19"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5529" checksum="799C6E9A3CB332EE" modified="2018-12-05" version="1" fragment="single">MVLLTLIAWWLFPRVPSSIRNLLGVAPESVLDVGRFQSLDFKCKRELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN33</accession>
    <name>A0A392TN33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010601845">
        <property type="protein sequence ID" value="MCI61550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6766" checksum="379B909C4A44525F" modified="2018-12-05" version="1" fragment="single">MNFQEESEKKTWRTAMDEEIKAIKKNDTWELASLPKWHKAIGVKWVYKAKKNSKGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TND6</accession>
    <name>A0A392TND6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010623501">
        <property type="protein sequence ID" value="MCI62691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TND6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="5012" checksum="FE8ABD08D7538EF5" modified="2018-12-05" version="1" fragment="single">MEKNVEPYEHGEKIRDRKAGKKEKKKAKMEEEIILRKELRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRY3</accession>
    <name>A0A392TRY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010622452">
        <property type="protein sequence ID" value="MCI62635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="6712" checksum="8A5617FB54223ACE" modified="2018-12-05" version="1" fragment="single">MHIEDTDDEIVEVDDDNNESNDGDGGGLSPSSGNSGDGGGNEEDAEGDGGGDEEDAQVDHDPYGET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSZ8</accession>
    <name>A0A392TSZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010635936">
        <property type="protein sequence ID" value="MCI63370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5025" checksum="038BC56FE951465C" modified="2018-12-05" version="1" fragment="single">MTTLDLATALHPKKPRWVKVTLRFSASRDSHIESNNVDTTTRDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTV4</accession>
    <name>A0A392TTV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010649781">
        <property type="protein sequence ID" value="MCI64134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6010" checksum="92CAECF99D917DE8" modified="2018-12-05" version="1" fragment="single">EILQVPTRGRDDIRGPVDPLGWKFFMKAQRDLQAAYAAQAAAQAPPPPLQDHQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUR6</accession>
    <name>A0A392TUR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010665675">
        <property type="protein sequence ID" value="MCI64903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3371" checksum="7F345D1A664BDB6B" modified="2018-12-05" version="1" fragment="single">FMPTLTVAFIAEAWGAGESQVGLGSLFDRTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVV5</accession>
    <name>A0A392TVV5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010672979">
        <property type="protein sequence ID" value="MCI65293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="1">
        <location>
            <begin position="2"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9462" checksum="97329FBEF1ED218C" modified="2018-12-05" version="1" fragment="single">MDFNTMIGECNISWVEEFYANALGHALDDYTSTVRGKTISYAPDVIDATFGFREAEYCWGSQQRASAYTEEEYAEMLQTLALPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZ48</accession>
    <name>A0A392TZ48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010681183">
        <property type="protein sequence ID" value="MCI65724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZ48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4126" checksum="2E21905D07C2FAAC" modified="2018-12-05" version="1" fragment="single">MVSFAKILAPILVNEMRKGKAKSNGDDEDDDEDDEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4Z7</accession>
    <name>A0A392U4Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010717493">
        <property type="protein sequence ID" value="MCI67466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2201" checksum="CEDFB230EA4E04B8" modified="2018-12-05" version="1">MAATTAVAVVVAAVMYAGGSSCGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U762</accession>
    <name>A0A392U762_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010733195">
        <property type="protein sequence ID" value="MCI68246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U762"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6357" checksum="53AFF63F644CA614" modified="2018-12-05" version="1" fragment="single">PHPVVDNHYTASCCRPSSYSTTADVLHGEPTDPVNFFSDRSSNCFSSSYIPGTYITNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBV4</accession>
    <name>A0A392UBV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase fray2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010751270">
        <property type="protein sequence ID" value="MCI69205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4478" checksum="D9D13FF645E72969" modified="2018-12-05" version="1" fragment="single">TILEGLAPLGDRFRTLKAKEADLLMQNKALYDMEQLSQVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UE00</accession>
    <name>A0A392UE00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010789016">
        <property type="protein sequence ID" value="MCI71077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UE00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5768" checksum="8A719BE5BF2943D0" modified="2018-12-05" version="1">MLNPTLETRVQSTPEGFNHQDYLHKKTADLEVRWCGVQDAPHRTTVGDSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UF63</accession>
    <name>A0A392UF63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010794105">
        <property type="protein sequence ID" value="MCI71324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UF63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4702" checksum="F254348161D5E951" modified="2018-12-05" version="1" fragment="single">TCLDEFWGGFALKPPQSTLFYVMSPGEVLMSPGAVLEVARRGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFA7</accession>
    <name>A0A392UFA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010797888">
        <property type="protein sequence ID" value="MCI71527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6493" checksum="E96285B542223DCD" modified="2018-12-05" version="1" fragment="single">LGLRASRESSELCDVWMSIELCLGVMFSMMKLITGGEMLSKGWKLVEPSLPGLVSRGDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKU2</accession>
    <name>A0A392UKU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010834284">
        <property type="protein sequence ID" value="MCI73244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8948" checksum="3A600BD703503D83" modified="2018-12-05" version="1" fragment="single">GKWTEELHSVLWSYRTTPHSTTGETPFRLTYGTEAVIPVETGASSFRAEIPVEGELNKEMLREELDLLEELRDGAALRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULW6</accession>
    <name>A0A392ULW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010848423">
        <property type="protein sequence ID" value="MCI73878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2540" checksum="D5EC45627498B686" modified="2018-12-05" version="1" fragment="single">MMRSRTPFTSVSFMAENFMIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMJ3</accession>
    <name>A0A392UMJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Homeobox-leucine zipper protein ATHB-14-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010841137">
        <property type="protein sequence ID" value="MCI73560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044830">
        <property type="entry name" value="HD-Zip_III"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950:SF7">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4112" checksum="1DF2BD64967C2677" modified="2018-12-05" version="1" fragment="single">MLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USM3</accession>
    <name>A0A392USM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase ANXUR2</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010886740">
        <property type="protein sequence ID" value="MCI75604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4352" checksum="683A4404FF1462DD" modified="2018-12-05" version="1" fragment="single">RLFDLAENKSSTVEEVFLLGWEEGGDVWKWQRRLWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V143</accession>
    <name>A0A392V143_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011012352">
        <property type="protein sequence ID" value="MCI81163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2933" checksum="5BE5593E162C1AC8" modified="2018-12-05" version="1" fragment="single">MCPEVFAQRAASDEQTDDQGHWRALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V209</accession>
    <name>A0A392V209_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011020103">
        <property type="protein sequence ID" value="MCI81483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V209"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3480" checksum="0E9AF8E3C749F2D6" modified="2018-12-05" version="1" fragment="single">MRCQDEHKVQLGGYVLHDEADHWWGNARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5E2</accession>
    <name>A0A392V5E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011068009">
        <property type="protein sequence ID" value="MCI83474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5656" checksum="E964FEE13E882820" modified="2018-12-05" version="1" fragment="single">VEVLVVVVVVVLVGVVLVVVVLVVLLVVVVVLVLVVVQRMVYFHEYKFVQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VCV5</accession>
    <name>A0A392VCV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011099413">
        <property type="protein sequence ID" value="MCI84791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VCV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6269" checksum="3A8BDA07A8A4CD86" modified="2018-12-05" version="1" fragment="single">RRPREEDVNWLGLVISSTQMFRSFFEGRSQGNSRDEAVTNPKGKEDTSEPASPSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VL52</accession>
    <name>A0A392VL52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011186452">
        <property type="protein sequence ID" value="MCI88183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VL52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7654" checksum="9B8751366280F48C" modified="2018-12-05" version="1" fragment="single">AEYERTTRIGDSHDDEGTSVLKPPPRICLPVEVLQSLKDLAPEDALNQLLSSHGAFVPTAADREKALQLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMI1</accession>
    <name>A0A392VMI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011198822">
        <property type="protein sequence ID" value="MCI88652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4084" checksum="0CAE0914C5691990" modified="2018-12-05" version="1" fragment="single">MRAPIPAGFEKPPQLGTYDGKSDPDEHIDNINAILDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR21</accession>
    <name>A0A392VR21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011230851">
        <property type="protein sequence ID" value="MCI89933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3328" checksum="20E8F671833CAA78" modified="2018-12-05" version="1" fragment="single">SDVAVQEEAPTESTKVTQLLQKLDTVRDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W863</accession>
    <name>A0A392W863_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011418590">
        <property type="protein sequence ID" value="MCI96577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W863"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="51" mass="5953" checksum="9C3BE16DE2AA22B0" modified="2018-12-05" version="1" fragment="single">GRDKGGKLAPNWEGPFRINENFTGGAYRLETLQGEIMPWTWNIANLRYYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8K6</accession>
    <name>A0A392W8K6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011430383">
        <property type="protein sequence ID" value="MCI97008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8K6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7198" checksum="88853C6411A1E264" modified="2018-12-05" version="1" fragment="single">KLSVEDLSVRAIRGKYVFDSYVQIMDVNIRDKGPEVTYGASGAEPEKRMIPNLLAKRSRLLICS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA38</accession>
    <name>A0A392WA38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">26S protease regulatory subunit 8 A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011437406">
        <property type="protein sequence ID" value="MCI97257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050221">
        <property type="entry name" value="26S_Proteasome_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23073">
        <property type="entry name" value="26S PROTEASOME REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="4">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI97257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4774" checksum="5B7DE5B80A2ADFC5" modified="2018-12-05" version="1" fragment="single">MDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WB51</accession>
    <name>A0A392WB51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein putative Ty1-copia subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011401535">
        <property type="protein sequence ID" value="MCI95960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WB51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4625" checksum="4186CC69E0137EB3" modified="2018-12-05" version="1" fragment="single">MEEELQSIEKNQTWKLVNLPDKKKKIDVKWVFKVKLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WBZ2</accession>
    <name>A0A392WBZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011452403">
        <property type="protein sequence ID" value="MCI97736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WBZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4353" checksum="E343440A6EAD9B78" modified="2018-12-05" version="1" fragment="single">MATDLHVVCPWRFLGNETPKPASAPMLFHEEKHDYRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1Y7</accession>
    <name>A0A392N1Y7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023898">
        <property type="protein sequence ID" value="MCH92978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1Y7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="20854" checksum="2CD3A970E6993580" modified="2018-12-05" version="1" fragment="single">MAEDQPQPSAPNRRVVDLSWVADEPRTTVSVYADCEDDLPEDMFTDIQDAPENWEVRIPTSRRRICSIWNCGTIPMYELAFRNLGYKMPFTDLEIVVFRHLRLAPSQLHPNSLAFLRAFEITADHLGLQRSCPRGEKAKGKLPRGAEQPPSKFGWVSLKQRTRVFDMYEESVRGFKEVYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N416</accession>
    <name>A0A392N416_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Lysine histidine transporter-like 6</fullName>
        </submittedName>
    </protein>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex. May be involved in lateral roots and nodules formation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026096">
        <property type="protein sequence ID" value="MCH93929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N416"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009734">
        <property type="term" value="P:auxin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48017">
        <property type="entry name" value="OS05G0424000 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="11" id="KW-0927">Auxin signaling pathway</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="14">
        <location>
            <begin position="26"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCH93929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20613" checksum="EFF5A925F112E584" modified="2018-12-05" version="1">MVSIPSQPSKEIQSEQKGADIGPARRAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGILMLLLSWCLTLNTMWQMIQLHECIPGTRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDVVYMVIGGKCLKNFVEIACTNCTQIRQSYWIMIFGGIHFFLSQLPNFNSVAGVSLAAAVMSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N804</accession>
    <name>A0A392N804_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031098">
        <property type="protein sequence ID" value="MCH95927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N804"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="18278" checksum="2385928DD57D9F8F" modified="2018-12-05" version="1">MVLSASSCSLTRSSLEEMLESLRRMDEEQEKKKDLPPALPSRPASKARLPPARRSLPNNFKVGRCVVVENGFIDNVESKRKETSTSPSTSECSEYKRSDSSFGRKRVKKDVVESPYVAAISELDGDTISYFIKMVRILPVPLSVLGQSIHSKTLDFKWPLASGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU97</accession>
    <name>A0A392NU97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047971">
        <property type="protein sequence ID" value="MCI02055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NU97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="54"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8331" checksum="CD5BBBEE895F9770" modified="2018-12-05" version="1">MANNHVQNSLRKVLQDEVSSQQRRTGQRGPRMETIVKTIGNNAQVNNETGIVKSNGTRNTNSQGNGNRGNNGNGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUK9</accession>
    <name>A0A392NUK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052412">
        <property type="protein sequence ID" value="MCI03513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2605" checksum="8C6C02E9464CE289" modified="2018-12-05" version="1" fragment="single">MDDSNSDECLPPGWTVKVNVRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVC5</accession>
    <name>A0A392NVC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051342">
        <property type="protein sequence ID" value="MCI03160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="29424" checksum="1FB1E04AED1ECBEF" modified="2018-12-05" version="1" fragment="single">SLSSLHELRLDGSNVEELPASIKYLSELEVQSLDNCSKLRCLPELPSSIKEFQADNCTSLVTVSTLKTFSLSMIGSKKCISFKNSTKMVLDGPSLDRIMEDVVLTMKSAAFHNISVRNNAAHTHSFNYNSAQVCLPGCRVPSQFKYRSTDSSITINVSNMIGFMLSVVVSPSNRTQQHGYLVGILCQCYYDDRWELGGKYRWNHKLTTNLEMDHVFVWIDPFQSRSIIRSHEKRIHFEFCITTYTSSGKELGGLLNIKECG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWR3</accession>
    <name>A0A392NWR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glyoxysomal processing protease glyoxysomal-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052861">
        <property type="protein sequence ID" value="MCI03660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5421" checksum="2953A863DFB2FD5B" modified="2018-12-05" version="1" fragment="single">GRPDLISGVRIDIMTEKTNEGSDQGNPCLLEGELLSLVGCLNLLMLFLTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P5H7</accession>
    <name>A0A392P5H7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">mTERF protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the mTERF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064797">
        <property type="protein sequence ID" value="MCI07267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.70.10:FF:000001">
        <property type="entry name" value="Mitochondrial transcription termination factor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.70.10">
        <property type="entry name" value="Transcription termination factor 3, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003690">
        <property type="entry name" value="MTERF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038538">
        <property type="entry name" value="MTERF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13068">
        <property type="entry name" value="CGI-12 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13068:SF133">
        <property type="entry name" value="MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02536">
        <property type="entry name" value="mTERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00733">
        <property type="entry name" value="Mterf"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0806">Transcription termination</keyword>
    <keyword evidence="3" id="KW-0809">Transit peptide</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI07267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="195" mass="22395" checksum="3D6664C1B3B164EF" modified="2018-12-05" version="1" fragment="single">MXNDSVPNIEVLRKLGVPQSSVSLLVSNFPNVAFAKHSRFVEAVNFVKEMGLDPLKSNFVLAVQVIVKMDKETWESKLKIFERWGWSRDICLLAFQKHPQIMLTSEKKILKIMSFLVKDMALTPEDIARSPWLLYRNLEKTLVPRCAVVKILKSRGLIKSGLRISSFIVLSEKTFLEKYVTPFEKDLPLVLDAYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9D1</accession>
    <name>A0A392P9D1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cystatin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068725">
        <property type="protein sequence ID" value="MCI08347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31228">
        <property type="entry name" value="CYSTATIN/MONELLIN SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31228:SF22">
        <property type="entry name" value="CYSTATIN_MONELLIN SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="152" mass="17365" checksum="B61710007681B3FC" modified="2018-12-05" version="1" fragment="single">MKQKYDNDPEPHYFACGNFEYENEASKKYNEESDKAVFEYHHMSQGISPFDPIPIPPLANVPGNNFPRELFITKERLERFTHLSCLALADYNTKNQLANDNEYEFAELVKAVSKRIPLGTYYITFNAKPKDSTSNCSATTFQAHVVQSVKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="30" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9M8</accession>
    <name>A0A392P9M8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative pectinesterase/pectinesterase inhibitor 51-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067897">
        <property type="protein sequence ID" value="MCI08140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00545">
        <property type="reaction ID" value="UER00823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030599">
        <property type="term" value="F:pectinesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042545">
        <property type="term" value="P:cell wall modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045490">
        <property type="term" value="P:pectin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000070">
        <property type="entry name" value="Pectinesterase_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31707">
        <property type="entry name" value="PECTINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01095">
        <property type="entry name" value="Pectinesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0063">Aspartyl esterase</keyword>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Pectinesterase catalytic" evidence="6">
        <location>
            <begin position="1"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI08140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21972" checksum="4A6E22C541933851" modified="2018-12-05" version="1" fragment="single">VAGDGFMAKXLTIENTAGANAHQAVAFRSDSDLSVIENCEFVGNQDTLYAQSMRQFYKSCRIIGNVDFIFGNSASFFQDCKILVQPRQARPKKGENNAITAHGRTDPAQSTGFVFHNCLVNGTEKYMELYYDKPNVHKNYLGRPWKEYSRTVFINSYLEALITPQGWLPWSGDVGLNTLYYGEFDNSGPGSNLTNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PI13</accession>
    <name>A0A392PI13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079547">
        <property type="protein sequence ID" value="MCI11277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PI13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22761" checksum="1F90DA4EFB00D629" modified="2018-12-05" version="1" fragment="single">MMVRMGFAEGWRRWIRACVFQSTMSVLVNGSTTEDFNVSKGLRQGDPLSPFLFLIVAEGLTGLMNKAMDNSLFQGYKVSNNISFHTLQFADDTIIVGEDSWDNLWSIKIVLRSFELVSGLKVNFYKSKLYGINLDDSFLRAASSFLNCGVESIPFRFLGIPVGANLRRRATWLHILELMKKRLSAWNGLHLSIGGRVTLINS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKQ8</accession>
    <name>A0A392PKQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Leucine zipper protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082716">
        <property type="protein sequence ID" value="MCI12089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21751" checksum="7AC68013A7CF13EC" modified="2018-12-05" version="1" fragment="single">MNGKPDAYSLISCAAFAIMSLSLSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFIIGAGFSYSLIILRSFLSSIDARGDNQYSQLQDENSVILYMNSLQLANIDIASASDSNRIDSTQLVTTNDISSVMEQLMAFVKALHYESVILVQMIVEHVQKYYAKKQSQFVFTDPNFMMDAFKLETIKGLEKTAKVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMI1</accession>
    <name>A0A392PMI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipoxygenase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087653">
        <property type="protein sequence ID" value="MCI13288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.60.20">
        <property type="entry name" value="PLAT/LH2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6299" checksum="25ED513139D15DE4" modified="2018-12-05" version="1" fragment="single">MSIIDRDHILKGIVVLMHKNVLNIDVVDDIANNEGDTVPPSFLDNSIALKLISASKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PN02</accession>
    <name>A0A392PN02_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083508">
        <property type="protein sequence ID" value="MCI12275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PN02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9263" checksum="D19191395C3B9FC9" modified="2018-12-05" version="1">MLAERLIGNGETPLWSWQWIDQLSASAKSNMWKNLRLLVGFSLQPSNPDRWRWVPGASGLFSVKSCYNVLLENRHVVDFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNF8</accession>
    <name>A0A392PNF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Structural maintenance of chromosomes domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FLX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088952">
        <property type="protein sequence ID" value="MCI13618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009908">
        <property type="term" value="P:flower development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040353">
        <property type="entry name" value="FLX/FLX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33405">
        <property type="entry name" value="PROTEIN FLX-LIKE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33405:SF18">
        <property type="entry name" value="PROTEIN FLX-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0217">Developmental protein</keyword>
    <keyword evidence="3" id="KW-0221">Differentiation</keyword>
    <keyword evidence="5" id="KW-0287">Flowering</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI13618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="12345" checksum="47FEB5A16A8FE4EB" modified="2018-12-05" version="1" fragment="single">DTFEYEKSKNVELVDQLKAKEKKLIAMAREVEMLRSEILNAEKRIHAPNLFGAATPADGSGPFLDHYGRAHGQMGIGQVGESMVPVVDSNGVAVVNSTDGSGAGWVGTYDPSVAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQH1</accession>
    <name>A0A392PQH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein GIGANTEA</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087136">
        <property type="protein sequence ID" value="MCI13165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042752">
        <property type="term" value="P:regulation of circadian rhythm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048586">
        <property type="term" value="P:regulation of long-day photoperiodism, flowering"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026211">
        <property type="entry name" value="GIGANTEA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36319">
        <property type="entry name" value="PROTEIN GIGANTEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36319:SF1">
        <property type="entry name" value="PROTEIN GIGANTEA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10578" checksum="6565FF3A38E40601" modified="2018-12-05" version="1" fragment="single">VSLLWHKLIASPETQPCSESTSAQQGWRQVVDALCNVVSAAPAKAATAVVLQAEKELQPWIAKDDDLGQKMWRINQRIVKLIVELMRNHDSSESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PV51</accession>
    <name>A0A392PV51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098815">
        <property type="protein sequence ID" value="MCI15971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PV51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5701" checksum="483FCF158F7CAE76" modified="2018-12-05" version="1" fragment="single">MTREVAVPHERKQGKARKKVKVLQSAVNRRWWPKNERRRSEERMASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4D0</accession>
    <name>A0A392Q4D0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein IQ-domain 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108580">
        <property type="protein sequence ID" value="MCI18115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4658" checksum="85EC50AF855B4223" modified="2018-12-05" version="1" fragment="single">GTLAPEKLSALKSNGVENGIQNGNLVLVETIAATRIQTAFRAYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMJ0</accession>
    <name>A0A392QMJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010145581">
        <property type="protein sequence ID" value="MCI25157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QMJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050795">
        <property type="entry name" value="Asn_Synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772">
        <property type="entry name" value="ASPARAGINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772:SF45">
        <property type="entry name" value="ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI25157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7974" checksum="DA542E2941AB19A2" modified="2018-12-05" version="1" fragment="single">MTDVPFGVLLSGGLDSSLVASITSRYLATTKAAEQWGSKLHSFCVGLEGSPDLKAGKEVADYLGTVHHEFTFTVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQF4</accession>
    <name>A0A392QQF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Embryo defective 2737 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151283">
        <property type="protein sequence ID" value="MCI26102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36404">
        <property type="entry name" value="EMBRYO DEFECTIVE 2737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36404:SF1">
        <property type="entry name" value="EMBRYO DEFECTIVE 2737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5203" checksum="8EBC6439196B737F" modified="2018-12-05" version="1" fragment="single">ALISIDPDRARDDPVVVKNVPYFKAKKALEEEVMKLDPPPRPSNWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QTQ9</accession>
    <name>A0A392QTQ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156163">
        <property type="protein sequence ID" value="MCI26916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QTQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF57">
        <property type="entry name" value="OS12G0499874 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14705" checksum="694E10131893FEF5" modified="2018-12-05" version="1">MLNLRGVFKTKKLSPRYIGPFQIIERIGEVAYRLALPLAMSGMHDVFHVSQLRKFVPDSSVTVDLEAIELELNMTFQPQPIQIVSRDVRKLRNRSIPIVKVIWEGSPDGEATWELESEMLRHYPQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUD0</accession>
    <name>A0A392QUD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160428">
        <property type="protein sequence ID" value="MCI27607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13291" checksum="5BD29CA089F59C2E" modified="2018-12-05" version="1" fragment="single">DMPRRVEHEVVSTEERDPLFNSPGIDLAAIPPAVTVNSGQSGIQVLMDEQFLQDVEGFLAARHDPGGRRLEAEKLFEIQQDLGLSFHPKEQPPVDILMKMEDREICELAKWQESNGPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0R4</accession>
    <name>A0A392R0R4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010170555">
        <property type="protein sequence ID" value="MCI29145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0R4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6128" checksum="C63ADFF3374EF1F6" modified="2018-12-05" version="1" fragment="single">SLSAGPKVSLMGRVEQPTKDDCQDFSLDGGRDRSWSSSWAKLFRLSGISLDEHVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4X2</accession>
    <name>A0A392R4X2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein kinase KIPK-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188712">
        <property type="protein sequence ID" value="MCI31641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4X2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10037" checksum="E4BD4733482C6B30" modified="2018-12-05" version="1" fragment="single">MGSFSGTCEIVEAREDLNTAKDAGIYQSSSGYSVSEKNQKLPALKLGFKDNLDNDINKLFESITLKSSSRDLSFLPDGTSPNMRSALKKPMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5E7</accession>
    <name>A0A392R5E7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cyclic nucleotide-gated ion channel 20 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186315">
        <property type="protein sequence ID" value="MCI31324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5E7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651:SF38">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8449" checksum="474EE9BCBB6403D9" modified="2018-12-05" version="1" fragment="single">EGDACGEELLRWYLEQSSESKEGKKVKLQGQGLTSDRTVRCLTNVEAFSLRTKDIEEVTTLFAKFLRSPRVQGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R620</accession>
    <name>A0A392R620_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF4283 domain protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192367">
        <property type="protein sequence ID" value="MCI32058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="124" mass="13564" checksum="5445B2959F9E85BA" modified="2018-12-05" version="1" fragment="single">VKIVEEWGYALGEDTCLFEDDGASEASQSDHDEGHGDPEVSRHVDALVEQFAEGLEEEDDXGSQENLQLSNNRVVDEVVSVEEPSNVGEAVVTQPVMDEIVLRFVLRRKALDTQSALGGMRGHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R706</accession>
    <name>A0A392R706_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Katanin p60 ATPase-containing subunit A1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188102">
        <property type="protein sequence ID" value="MCI31560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R706"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015630">
        <property type="term" value="C:microtubule cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051013">
        <property type="term" value="P:microtubule severing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050304">
        <property type="entry name" value="MT-severing_AAA_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23074">
        <property type="entry name" value="AAA DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23074:SF19">
        <property type="entry name" value="KATANIN P60 ATPASE-CONTAINING SUBUNIT A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5642" checksum="412CFD93BCCA9F56" modified="2018-12-05" version="1" fragment="single">MVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELQVQVDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R9I9</accession>
    <name>A0A392R9I9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010203062">
        <property type="protein sequence ID" value="MCI33273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R9I9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3962" checksum="36D2056649B987B3" modified="2018-12-05" version="1">MGRDPPQSTLDTATWCIVGQTALKAASSKEAKHESVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC42</accession>
    <name>A0A392RC42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010211053">
        <property type="protein sequence ID" value="MCI34151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13074" checksum="7708AC5DB4EE7B29" modified="2018-12-05" version="1" fragment="single">MAQRKPSFRFRIPSWLSGTPESMSRRPKGSSKSTAQSDTNVPIQRPSRPSLITPAELPPIPXXXXXXXXXEPLNQSPPRPTQPMPLSTSVIVETTNSKPPSPSISSNHDNSPPSPSHAASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCC0</accession>
    <name>A0A392RCC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204308">
        <property type="protein sequence ID" value="MCI33430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5327" checksum="EF08B1AC1859ECFA" modified="2018-12-05" version="1" fragment="single">MTLEEAYIEFMGDLEEYYEEEKAQIKDRAESSQRKLPTKQKDPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIT8</accession>
    <name>A0A392RIT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010225989">
        <property type="protein sequence ID" value="MCI35690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5163" checksum="0CF924F91D39771F" modified="2018-12-05" version="1" fragment="single">MASSSQERIEVPLAGIWKDFAGDSDGDRFVPEPHGSKEDKDVWEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQD4</accession>
    <name>A0A392RQD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010260612">
        <property type="protein sequence ID" value="MCI38841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="14159" checksum="F233E3F1D446108A" modified="2018-12-05" version="1" fragment="single">FMRLMKEEGVIITRDDIAEVYPLKERKDFSDSEEDLPASEGKDIAAAATPKRKRGGKEKVEGVVGKKKITKKQRTQKKKASRAVRKLVIQEEDDEETDEEPLLCKRKRTETDKDQPEPKRMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU11</accession>
    <name>A0A392RU11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010276255">
        <property type="protein sequence ID" value="MCI40128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8981" checksum="C9732CC942CDBF20" modified="2018-12-05" version="1">MLLPTIILTSEVSCGRYLRHPISSLRTGIDSFGHEQQKDAIDDISCNPNEEEDDSEANNLMIEKSNRGFKNSQTCIIPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU41</accession>
    <name>A0A392RU41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vesicle-associated protein 1-2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010273103">
        <property type="protein sequence ID" value="MCI39889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7118" checksum="130EF6DB17FE8D45" modified="2018-12-05" version="1" fragment="single">HNDAPPNMQGEDKIIVEVIYVRDGAIVKNITPEMFEKESGYEVKECEVIVVYGVSPIPPSSVQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVD6</accession>
    <name>A0A392RVD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Reticuline oxidase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010271388">
        <property type="protein sequence ID" value="MCI39760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012951">
        <property type="entry name" value="BBE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32448">
        <property type="entry name" value="OS08G0158400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08031">
        <property type="entry name" value="BBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Berberine/berberine-like" evidence="3">
        <location>
            <begin position="12"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI39760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10278" checksum="A3C7508A09FB5F7F" modified="2018-12-05" version="1" fragment="single">MTPYVSKFPREAYVNYRDLDLGMNKKNSTSFIQATSWGNMYFKDNFNRLVKIKTKVDPENVFRHEQSIPPLPVSAMKLKDKKCKSWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWP0</accession>
    <name>A0A392RWP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Wall-associated receptor kinase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010287123">
        <property type="protein sequence ID" value="MCI41051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.25.10">
        <property type="entry name" value="Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33491">
        <property type="entry name" value="OSJNBA0016N04.9 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57196">
        <property type="entry name" value="EGF/Laminin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6509" checksum="780E608A0D06AA20" modified="2018-12-05" version="1" fragment="single">MVVNWAVTNESCQIAQTMDSYACKENSECIDNDPDYEGYRCKCLEGFEGNSYLPGGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYI7</accession>
    <name>A0A392RYI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Periodic tryptophan protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295069">
        <property type="protein sequence ID" value="MCI41683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027145">
        <property type="entry name" value="PWP2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858:SF0">
        <property type="entry name" value="PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5195" checksum="D4A9ECF611C2CCED" modified="2018-12-05" version="1">MPDFVCIHLLSISKEKITTALFNDLGNWLSFGCAKLGQLLVWEWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYT5</accession>
    <name>A0A392RYT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010290543">
        <property type="protein sequence ID" value="MCI41302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8552" checksum="E5C6744C092797FC" modified="2018-12-05" version="1" fragment="single">TQPPSASTGGSHGITPDAVAFWSERSPSMLFLHRSELELVVVLLHAICRSARDGSRESNHRKPGHDSTANKATGCITITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6U8</accession>
    <name>A0A392S6U8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010326304">
        <property type="protein sequence ID" value="MCI44117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6U8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9775" checksum="EF69189D16FD6368" modified="2018-12-05" version="1" fragment="single">MQSGCFLCVSVMATARTTFFSSDDVVVLKKYFSKLEHERWSAPGTHLLVVYTVDFSLATIAKLTNFFSTRDIESTVGKVKLPSSTMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S7V5</accession>
    <name>A0A392S7V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010335098">
        <property type="protein sequence ID" value="MCI44779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S7V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10104" checksum="0DD16FCE8A7C4952" modified="2018-12-05" version="1" fragment="single">MENWREQFNALRSDVDQMADKLDRVLNVLAKLNFHPQHVVGLNATTIGANPSANLSSSNVTWPLFGLPVGCTPSRYMHPSNKGFAAAQVIQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S927</accession>
    <name>A0A392S927_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340626">
        <property type="protein sequence ID" value="MCI45189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S927"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7490" checksum="F1DA3267D44AE519" modified="2018-12-05" version="1" fragment="single">PILDDNGQQKTSAKLVDTKRLLGCKTPEEVASFWRNMTSVQARVRAAKNTKKKTSDTVSAGTPSGQASPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SB18</accession>
    <name>A0A392SB18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chalcone synthase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010338937">
        <property type="protein sequence ID" value="MCI45046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SB18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030639">
        <property type="term" value="P:polyketide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001099">
        <property type="entry name" value="Chalcone/stilbene_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011141">
        <property type="entry name" value="Polyketide_synthase_type-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877">
        <property type="entry name" value="HYDROXYMETHYLGLUTARYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877:SF10">
        <property type="entry name" value="TYPE III POLYKETIDE SYNTHASE B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00195">
        <property type="entry name" value="Chal_sti_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chalcone/stilbene synthase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7560" checksum="A36D0EA13976CFF0" modified="2018-12-05" version="1" fragment="single">MNEEILKKYPELVVEGASTVKQRLEICNKAVTQMAIEASQVCLKNWGRPLSDITHVVYVSSSEARLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHH1</accession>
    <name>A0A392SHH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010370627">
        <property type="protein sequence ID" value="MCI47306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3536" checksum="478C6AA8EB66AD57" modified="2018-12-05" version="1" fragment="single">MVRGCCGGHGSGCCCDDFGAGAVSMLLVSGWGDGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJH5</accession>
    <name>A0A392SJH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010380487">
        <property type="protein sequence ID" value="MCI48026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="11111" checksum="C1795100A6F13FBB" modified="2018-12-05" version="1" fragment="single">MFVDSVRHFKERFFIVRPLTELAIDSLFESEFVLNDDGSVRLDEEGVEMTRLVSRFPLCWSREHFDKPAEYYLTKEETMSPEELAGLEKLQAYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQX6</accession>
    <name>A0A392SQX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Plasma membrane ATPase 4</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010414674">
        <property type="protein sequence ID" value="MCI50320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.890">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3571" checksum="AF3EBED505F205F5" modified="2018-12-05" version="1" fragment="single">LRELHTLKGHVESVVKLKGLDIDTIQQHYTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSH9</accession>
    <name>A0A392SSH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010434547">
        <property type="protein sequence ID" value="MCI51609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2534" checksum="2A878E2DAA5BCAC0" modified="2018-12-05" version="1" fragment="single">MGFSGYVAASDWCRLRPATRCGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SW90</accession>
    <name>A0A392SW90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010445603">
        <property type="protein sequence ID" value="MCI52335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SW90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="76"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="33"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI52335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10872" checksum="D00E455DA670EA0E" modified="2018-12-05" version="1" fragment="single">FQVLVEKCQEIEDMRSKRVNRQGSFSAGGPSRPSHQSQNRGRQGTRHYNRPQNNHGSSRSANQGTRGNPSGQKLTCYRCGEEGHYANECGNPRLTCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SWV9</accession>
    <name>A0A392SWV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010446196">
        <property type="protein sequence ID" value="MCI52366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SWV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4784" checksum="2D940A276FC2C33F" modified="2018-12-05" version="1" fragment="single">YRERYAAPGSSSIAPASAAAPSSVAVPASAAPPNLHLCRAEKNEIAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SXU2</accession>
    <name>A0A392SXU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010460318">
        <property type="protein sequence ID" value="MCI53247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SXU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8975" checksum="87F70C90701B5B24" modified="2018-12-05" version="1" fragment="single">DNILAEIKLLPWTGSMQPCLFYDRQIVPTQSPPPKPSDCAVSNHLLPPKPPNGGDVQNYMLPPPPKPPDLSFQLKKGEFQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYR2</accession>
    <name>A0A392SYR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-protease polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010466131">
        <property type="protein sequence ID" value="MCI53612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9335" checksum="D1351497E0BE01A3" modified="2018-12-05" version="1" fragment="single">RNFTQNTNRSNGDQRKQITEEKVSQSKGVQCHECKGYGHIRTECATYLKKQNRGLIVSWSDEEESKEDEESETAKRITALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T524</accession>
    <name>A0A392T524_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010503086">
        <property type="protein sequence ID" value="MCI55872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T524"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9146" checksum="388D6E22D0E1B9FF" modified="2018-12-05" version="1" fragment="single">MASASHNQRDSDDDTVPHSPPREFDPILTPVGNNQEQAPVDNTGDPRDGRETSFSSDEDGDGAPILTERQREKRPLFTQDSPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5F7</accession>
    <name>A0A392T5F7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposable element Tf2 155 kDa protein type 3</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010497755">
        <property type="protein sequence ID" value="MCI55525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5F7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6928" checksum="41FA1891EEB94FD7" modified="2018-12-05" version="1" fragment="single">MWAEWSYNTSQHSGTTKTPFEVTFGKPPPTIPQYLEGTSSIAAVDELLETREIMLADLRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T706</accession>
    <name>A0A392T706_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010503898">
        <property type="protein sequence ID" value="MCI55930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T706"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="7244" checksum="F0C04C2D05414AF2" modified="2018-12-05" version="1" fragment="single">ARIRERDGRIRRSVLEHEDFLQRQAEQHQDEEPVHVVQQEEPVHVMQLSCGLEDRLIRVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9T9</accession>
    <name>A0A392T9T9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010535258">
        <property type="protein sequence ID" value="MCI57798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9T9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8143" checksum="B0E8B7A58C6BA37F" modified="2018-12-05" version="1" fragment="single">EMLEDLDNDESLSEAMVLLGKQFNRIMKRMDKRPKFNVPSTKLDISKPIANQKRTRGDDKLTPSKGVQCHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9Z6</accession>
    <name>A0A392T9Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010533215">
        <property type="protein sequence ID" value="MCI57682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2264" checksum="16CA9A0C90BD281F" modified="2018-12-05" version="1" fragment="single">GGGGGGGEDNGFGEELVIEVSTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TA86</accession>
    <name>A0A392TA86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010538678">
        <property type="protein sequence ID" value="MCI57999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TA86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="6776" checksum="14A47DF8DA252080" modified="2018-12-05" version="1" fragment="single">TPEETAHISIQIPKKRGGATAESDTTNAPSNPIKKKRATRSSTGSDLLQGGSAQNLTAGSDVVAQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJQ3</accession>
    <name>A0A392TJQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010576835">
        <property type="protein sequence ID" value="MCI60175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJQ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2004" checksum="A74BFA3E66976E4D" modified="2018-12-05" version="1" fragment="single">VLLASAPFQMKVALAAVQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLR6</accession>
    <name>A0A392TLR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010598987">
        <property type="protein sequence ID" value="MCI61387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9602" checksum="9653726CC7D53290" modified="2018-12-05" version="1" fragment="single">DDHTAAIQTSPHREHNTVLSPVRNTEQLVPETDPRDGLETPLSSEDGEDLQVLTERQVGKRPQETQEILVDNAQPIVPATSADIAAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNW6</accession>
    <name>A0A392TNW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010617095">
        <property type="protein sequence ID" value="MCI62334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8201" checksum="6A5B807B1281E4B0" modified="2018-12-05" version="1" fragment="single">VGERSVVIPSPSYNAGHRESQPSPARNRNTGSAGGCVVDAANAADAVEEVKVVLVMLPLPVLSLNLDVLSERIIVQVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTX6</accession>
    <name>A0A392TTX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010657809">
        <property type="protein sequence ID" value="MCI64522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3862" checksum="7416CACFD25A0783" modified="2018-12-05" version="1" fragment="single">MPETQVTTTLEGYNHQDYCHHQSKTVRKTADLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TU74</accession>
    <name>A0A392TU74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative WRKY transcription factor 72-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010636281">
        <property type="protein sequence ID" value="MCI63395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TU74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="39"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI63395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8497" checksum="ECE1FB0235A265A9" modified="2018-12-05" version="1" fragment="single">MGEVKEENERLKMMLSRVEKDYNSLQLRFFDIVNKEVTNKGVDDSSTSHDEIDEEPELVSLCLGRSPNEHKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYE6</accession>
    <name>A0A392TYE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010690615">
        <property type="protein sequence ID" value="MCI66193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7568" checksum="698B342633809ADE" modified="2018-12-05" version="1" fragment="single">NNKKTAASSKKTTKPSSSKGESSRTSRASPSLREKKCESSPKAQQEASSSESSSTDSDYAEFLLTYDENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZR7</accession>
    <name>A0A392TZR7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010685401">
        <property type="protein sequence ID" value="MCI65934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="47" mass="5481" checksum="ED659D3120D53CDE" modified="2018-12-05" version="1" fragment="single">MGCAEEHKITLGTYVLREEANQWWKNPKLRLGAGGIVITWEMFRAEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U207</accession>
    <name>A0A392U207_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010717875">
        <property type="protein sequence ID" value="MCI67483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U207"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5532" checksum="50BBDCC7C9E5C33E" modified="2018-12-05" version="1" fragment="single">MLRLTNPFLEEVVEKQQTDTRLVKYKALIEQGKKLDIEIDENRVMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U677</accession>
    <name>A0A392U677_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010712430">
        <property type="protein sequence ID" value="MCI67245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U677"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6802" checksum="D8F0F4BB12A7C54D" modified="2018-12-05" version="1" fragment="single">GAFPANLLEDGEGNPILDDNGWQKTSAKLVDTKRLLGCKTPEEVASFWRMFALRLTCLFIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8P3</accession>
    <name>A0A392U8P3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010764454">
        <property type="protein sequence ID" value="MCI69863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8P3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="70" mass="7898" checksum="FDFCFCBB0FE003E2" modified="2018-12-05" version="1" fragment="single">SGIMAAAARTNAQIVEALDALTNIVARDNQPGRDGEMRLERFMKQKPPTFTRGYNPDGAYKWLEELEIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U950</accession>
    <name>A0A392U950_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010745493">
        <property type="protein sequence ID" value="MCI68916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U950"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8745" checksum="ECF627059B09DC32" modified="2018-12-05" version="1" fragment="single">TNGADKWTIFVDGASNATGAVARIILENENGILIEVSLALSFPTSNNQAEYEAFLAGLRLPEDMQAKEIKIYTDSQLVASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UA13</accession>
    <name>A0A392UA13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010774043">
        <property type="protein sequence ID" value="MCI70349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UA13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6925" checksum="7B79767CF9A2F9C8" modified="2018-12-05" version="1" fragment="single">MEERVEEEPFEPGEQWYEESAEEIEVTYTPDEVLVHEMDELDCQLLNMKEYDVRTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAV4</accession>
    <name>A0A392UAV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010777829">
        <property type="protein sequence ID" value="MCI70532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7293" checksum="53DB68FAE95FED39" modified="2018-12-05" version="1" fragment="single">RRRSPSQHSYPLSSFFVPINSVKMRLSPVVRLTLASRHHHVSTLQGWFKQSPPPWTALDYLPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC48</accession>
    <name>A0A392UC48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010766715">
        <property type="protein sequence ID" value="MCI69996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6275" checksum="D860D48D4E21B5FD" modified="2018-12-05" version="1" fragment="single">MAPFEALYGRKCRTPLCWFESGESAVLGPEIVQQATEKIKMIQEKMRASQSRQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCA0</accession>
    <name>A0A392UCA0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010790578">
        <property type="protein sequence ID" value="MCI71151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6567" checksum="00BDA4280AB22D82" modified="2018-12-05" version="1" fragment="single">MDFGCSYHMCSMKEYFETVELVEGGVVHLGNGKACKVQRMGSVCLTTFANCGFLFTRCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEA1</accession>
    <name>A0A392UEA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010782479">
        <property type="protein sequence ID" value="MCI70760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5931" checksum="0E2BD5D9B8F5562B" modified="2018-12-05" version="1" fragment="single">MMKTFMTTPVKTAAELELVKVVTNSAEVACVYCDGGHLFEDCPGNPVCCESEETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEG1</accession>
    <name>A0A392UEG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010806908">
        <property type="protein sequence ID" value="MCI71929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6138" checksum="0D5F48B79B0D40B7" modified="2018-12-05" version="1" fragment="single">ERMAHRTSQLEGCFRKALSLARRATSYGALHTFIVHHARRAEQVARRAGAKSIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEL3</accession>
    <name>A0A392UEL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010807917">
        <property type="protein sequence ID" value="MCI71979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4474" checksum="27EB975241AF7942" modified="2018-12-05" version="1" fragment="single">MLGRTLAFRIKWQKEWKQGSVLECKDIKVLVDRLQKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFG1</accession>
    <name>A0A392UFG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010790630">
        <property type="protein sequence ID" value="MCI71156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4691" checksum="362B1B6959624E85" modified="2018-12-05" version="1" fragment="single">MVAWTSTSVLGVAIVSWITVLLLPAFLVLASLDNKSALEFRSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI62</accession>
    <name>A0A392UI62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010835677">
        <property type="protein sequence ID" value="MCI73303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6925" checksum="A154E3B9A135B35C" modified="2018-12-05" version="1" fragment="single">SNSELPRSATYYLAQRAVKNLVPRFAQREIRRSESNTRNQAQARNLSWPRPISIPTTNDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI74</accession>
    <name>A0A392UI74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger protein CONSTANS-LIKE 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010834624">
        <property type="protein sequence ID" value="MCI73261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3265" checksum="8F8ACEBE18662CFA" modified="2018-12-05" version="1" fragment="single">MEVGVVPDGNAVSEISNCGYGKAVAADREARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJJ0</accession>
    <name>A0A392UJJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010828099">
        <property type="protein sequence ID" value="MCI72927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3941" checksum="67BC473CCE324510" modified="2018-12-05" version="1" fragment="single">LPPHQRQSEQKNYHHPFSEDSPSRSDPVPDNSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UP99</accession>
    <name>A0A392UP99_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010883539">
        <property type="protein sequence ID" value="MCI75473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UP99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="48" mass="5349" checksum="9470EDA93C3667D7" modified="2018-12-05" version="1" fragment="single">MTKARICDEDGKAKSSYYKAMNDRKGKSQDHGKPYDNNGNGRKKQGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQM3</accession>
    <name>A0A392UQM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010893440">
        <property type="protein sequence ID" value="MCI75891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5085" checksum="F0BB96685EB21EAE" modified="2018-12-05" version="1" fragment="single">MVYREKGAVDVKFDDIADILPGKEIVCVKVKILRLWKVPALSSIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT34</accession>
    <name>A0A392UT34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010871426">
        <property type="protein sequence ID" value="MCI74935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3521" checksum="CED6BD6D78327A8D" modified="2018-12-05" version="1" fragment="single">AKQELWNSLSVKIQLWGGRGYVSAGTLMLSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UV10</accession>
    <name>A0A392UV10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010978807">
        <property type="protein sequence ID" value="MCI79667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UV10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2274" checksum="EE90996FA05624DB" modified="2018-12-05" version="1" fragment="single">TTAVASVTAFVHCVPGISAKNEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW23</accession>
    <name>A0A392UW23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010971197">
        <property type="protein sequence ID" value="MCI79322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3888" checksum="8EFBB39D4BC56E58" modified="2018-12-05" version="1" fragment="single">MSSLMAKELELTENFRDLSLVCQRTTRSVKVGML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXJ7</accession>
    <name>A0A392UXJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011002135">
        <property type="protein sequence ID" value="MCI80736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4522" checksum="B1DC2D4D33C8E140" modified="2018-12-05" version="1" fragment="single">MHVWFNCQFIRGSWNAEGLNAVVQQRLQRCVSTAELLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYJ6</accession>
    <name>A0A392UYJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011010663">
        <property type="protein sequence ID" value="MCI81088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6580" checksum="B7011D011CD8914D" modified="2018-12-05" version="1" fragment="single">IPRPILDGDFELVPLGEDPSSGVKIGTGLPYLARKQLKACLRENADLFAWSAAEMPGLDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V236</accession>
    <name>A0A392V236_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011041524">
        <property type="protein sequence ID" value="MCI82364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V236"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6903" checksum="098BC389003666C4" modified="2018-12-05" version="1" fragment="single">PVNNGFCRFGFLRELSHSSLCHVLHVGIDVEVMACHRRVDSWHFLWRGGKNFYVGLEASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4B3</accession>
    <name>A0A392V4B3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011034425">
        <property type="protein sequence ID" value="MCI82079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4B3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8213" checksum="A4643E97397C86E0" modified="2018-12-05" version="1" fragment="single">ITPARNNQEEIPANNAGDPRDREEASPFTEDKDEVQEITEQLLGKHPQFTQEKPMDKTQPIAPSSNADIAEVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5R4</accession>
    <name>A0A392V5R4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011071195">
        <property type="protein sequence ID" value="MCI83614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5R4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8187" checksum="6711BC356CBCB6BA" modified="2018-12-05" version="1" fragment="single">EGVFKAAQHSWENALAQIKVANPGLEFSTEGMGMLRKVVDGQIIIPEQYRQIEADDEEEEEQEEEDNGEEGHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VC20</accession>
    <name>A0A392VC20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011080910">
        <property type="protein sequence ID" value="MCI84020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VC20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4496" checksum="69CB94FC6E89DC96" modified="2018-12-05" version="1" fragment="single">AEEGAVNLVGATKHPMVVRGMIFMRAEGILRDEGEVQLVGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJQ2</accession>
    <name>A0A392VJQ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ribose-5-phosphate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.6</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>aldehydo-D-ribose 5-phosphate = D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14657"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58273"/>
            <dbReference type="EC" id="5.3.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate degradation; pentose phosphate pathway; D-ribose 5-phosphate from D-ribulose 5-phosphate (non-oxidative stage): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ribose 5-phosphate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.6" evidence="4"/>
    <dbReference type="EMBL" id="LXQA011160164">
        <property type="protein sequence ID" value="MCI87201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJQ2"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004751">
        <property type="term" value="F:ribose-5-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009052">
        <property type="term" value="P:pentose-phosphate shunt, non-oxidative branch"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050262">
        <property type="entry name" value="Ribose-5P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004788">
        <property type="entry name" value="Ribose5P_isomerase_type_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43748">
        <property type="entry name" value="RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43748:SF3">
        <property type="entry name" value="RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06026">
        <property type="entry name" value="Rib_5-P_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI87201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7588" checksum="2B5DCE9499A99601" modified="2018-12-05" version="1" fragment="single">NPRLDLAIDGADEVDPYLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVTGLGGSGLAMPVEVVQFCWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVF3</accession>
    <name>A0A392VVF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011271770">
        <property type="protein sequence ID" value="MCI91432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7617" checksum="45925BA2AE3A8533" modified="2018-12-05" version="1" fragment="single">GEENGEADEGQVEENGETDKGQEEENGEIDNGRGQVEENGETDEGQEEKNNENEFEDGMADSDDFLYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVL6</accession>
    <name>A0A392VVL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011287140">
        <property type="protein sequence ID" value="MCI91967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7333" checksum="F053318EFE0BEF6F" modified="2018-12-05" version="1" fragment="single">VDTITDPKLDWVGPEPRGIASVITSTALGVHTIVEDREEGQERNWDVYCPTEGRHICSEFSEDGFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWH4</accession>
    <name>A0A392VWH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011309262">
        <property type="protein sequence ID" value="MCI92748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5228" checksum="6ECEE2DDCA4D2919" modified="2018-12-05" version="1" fragment="single">MCRGMVELRLPPLTALYSVTACWSVWRRCGLCRLSGHNYDVCPNAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VY87</accession>
    <name>A0A392VY87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011320969">
        <property type="protein sequence ID" value="MCI93156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VY87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6993" checksum="4AEB42701EC640A9" modified="2018-12-05" version="1" fragment="single">MDEQDDEDLEIVVDLMDEQDDQEYLDNGFDLNILADNGLDLNKFPDSEDDSSDEKEHKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4M6</accession>
    <name>A0A392W4M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011382156">
        <property type="protein sequence ID" value="MCI95277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="2093" checksum="AA8A33CB73419897" modified="2018-12-05" version="1" fragment="single">MCECFLRYETANEPTANT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5V2</accession>
    <name>A0A392W5V2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011352431">
        <property type="protein sequence ID" value="MCI94295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5V2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2804" checksum="5C28C97E2CCEAAF1" modified="2018-12-05" version="1" fragment="single">MGVLFSYRQRSLHPWRATTVHSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W665</accession>
    <name>A0A392W665_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397689">
        <property type="protein sequence ID" value="MCI95827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W665"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6011" checksum="5CC014CEC9902F68" modified="2018-12-05" version="1" fragment="single">CLEQPLSKYQSSLDEALKEVWAIKAMPLPLEVEATSSFLGFHSFCVKTTMGSGFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WBU1</accession>
    <name>A0A392WBU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011419306">
        <property type="protein sequence ID" value="MCI96611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WBU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4926" checksum="BA5C8F3301A40305" modified="2018-12-05" version="1" fragment="single">MMWQRDMIISVSFEQLSKLRTNHLTHPLAAGVMSVIWRRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC88</accession>
    <name>A0A392WC88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011412640">
        <property type="protein sequence ID" value="MCI96360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3858" checksum="1B2185597EC49AC0" modified="2018-12-05" version="1" fragment="single">RCISKAGGELTTDEWEGSSRIVEGTCGGVCIVCKLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WHB2</accession>
    <name>A0A392WHB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011442967">
        <property type="protein sequence ID" value="MCI97430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WHB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7869" checksum="51C91B82E9748BB8" modified="2018-12-05" version="1" fragment="single">EKEYSATKEKLEKDIKDLKAEHDLKLEQLGKEKEEKWARDRKTFTDEIAHLRAQVATQKDQLASSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ24</accession>
    <name>A0A392MZ24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Formation of crista junctions protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MICOS complex subunit Mic60 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023497">
        <property type="protein sequence ID" value="MCH92806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061617">
        <property type="term" value="C:MICOS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042407">
        <property type="term" value="P:cristae formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019133">
        <property type="entry name" value="MIC60"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15415:SF7">
        <property type="entry name" value="MICOS COMPLEX SUBUNIT MIC60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15415">
        <property type="entry name" value="MITOFILIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09731">
        <property type="entry name" value="Mitofilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="4" id="KW-0999">Mitochondrion inner membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH92806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10272" checksum="551178EF0A2442ED" modified="2018-12-05" version="1" fragment="single">INALCMAFYARSEEARQSHAAQNFALRALALEDALSKGLPIQKEIESSQSYLEGIDKDSVLDLVLASLPEDTRNNGTDTQLQLKQKASCVIVCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ27</accession>
    <name>A0A392MZ27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022053">
        <property type="protein sequence ID" value="MCH92169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025836">
        <property type="entry name" value="Zn_knuckle_CX2CX4HX4C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF178">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14392">
        <property type="entry name" value="zf-CCHC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="2">
        <location>
            <begin position="133"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Zinc knuckle CX2CX4HX4C" evidence="3">
        <location>
            <begin position="275"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="390" mass="44471" checksum="1EFBABB077E7F61F" modified="2018-12-05" version="1" fragment="single">MASSMNTASASRTTQATNNHHVASEGTNQRPSKVPKLSIPQPNLCIQIPEFMGPNPTFNHHEENQYFQYNSSKLQQEEVIHQDQANIRQENHRPQSSHPRNTAEASFTNAMPQSPGDGPFCMYKEAHIKEGIQQCKNSLIGKLFSNKPIIKPIIQNTLMGIWGNPKGFTITEIEGGLYHLTMDQDKDIQRAVKGNPWIIRNSWFMVHLWDRKLNPTNIEFNFVPIWIQLWGLPIHCKTITMGKHLGSQLGKVEDAALYDYPQQARIVKIKVLLNIEEPIRPGMFIGNPKDGITWVDFRYENMPMFCFDCGLVGHNEDNCISPTQAQPEGYVNPRGPWLRSNIYGKRVNDKRDKRFNSNPMQSMSGGQFSPIPKAMLEMLAKMKIEEENEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGA7</accession>
    <name>A0A392NGA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035314">
        <property type="protein sequence ID" value="MCH97574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8173" checksum="DE4B31543CB7FDE2" modified="2018-12-05" version="1" fragment="single">MWEGELPLGAAAEVEELEEILMDVYPRVDTKDWRRRIPEPIGSWSNFLKVGSLVKSNKGNEIHHLIWLATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIU9</accession>
    <name>A0A392NIU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040104">
        <property type="protein sequence ID" value="MCH99361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8713" checksum="20ADB75E225AD2DF" modified="2018-12-05" version="1">MKLSPKAWRSEKLKSCTLEPGHGRAWLATVLPGLAEALKTRPEALPRLVLVWPRPWQVAGSAESKISLWLFISPFIGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJ23</accession>
    <name>A0A392NJ23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039386">
        <property type="protein sequence ID" value="MCH99105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJ23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9914" checksum="4CEC8A8FCB4AD196" modified="2018-12-05" version="1" fragment="single">GLYEEMYRHGYHFEGLALSVSGTGLSKNRLALSGEVYRHDNHFEGLVFYHPKARSQFAHVFPLSSPIIPFPLPKSIPVTRKGTLNFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWV7</accession>
    <name>A0A392NWV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">40S ribosomal protein SA</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053034">
        <property type="protein sequence ID" value="MCI03710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7745" checksum="DCF585C6FFF45A6D" modified="2018-12-05" version="1" fragment="single">VDLFFYREPEDAKEQEEDDGPAPDYAIADFNAASIPTDGXWPSAIDQPWTDAVPEPISAAPAVNWSAPEAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZG2</accession>
    <name>A0A392NZG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase L2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057795">
        <property type="protein sequence ID" value="MCI05183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004364">
        <property type="term" value="F:glutathione transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044629">
        <property type="entry name" value="GSTL1/2/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44328">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44328:SF11">
        <property type="entry name" value="GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="GST C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15934" checksum="67A5C9C2DA26A918" modified="2018-12-05" version="1" fragment="single">ICWKQGLQDKIELVPIDLQDRPSWYKDKVYPANKVPSLEHNNEVRGESLDLIKYIDTHFEGPSLFPNVPDDKEFAEELLSYTDTFYKTVVSSFKGGDVTEAGTAFDYLETVLSKYDNGPFFLGQFSLVSIFILIHSNDTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1C4</accession>
    <name>A0A392P1C4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">H(+)-transporting two-sector ATPase</fullName>
            <ecNumber evidence="3">7.1.2.2</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + H2O + 4 H(+)(in) = ADP + phosphate + 5 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010059950">
        <property type="protein sequence ID" value="MCI05851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1C4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042776">
        <property type="term" value="P:proton motive force-driven mitochondrial ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050053">
        <property type="entry name" value="ATPase_alpha/beta_chains"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15184">
        <property type="entry name" value="ATP SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15184:SF80">
        <property type="entry name" value="ATP SYNTHASE SUBUNIT BETA-1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATPase F1/V1/A1 complex alpha/beta subunit nucleotide-binding" evidence="10">
        <location>
            <begin position="42"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI05851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10176" checksum="C0C9E085B96DF120" modified="2018-12-05" version="1" fragment="single">MNVIGEPIDEKGEFKTEHYLPIHREAPAFVEQATEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3W6</accession>
    <name>A0A392P3W6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062764">
        <property type="protein sequence ID" value="MCI06708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3W6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008390">
        <property type="entry name" value="AWPM-19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33294">
        <property type="entry name" value="AWPM-19-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33294:SF5">
        <property type="entry name" value="AWPM-19-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05512">
        <property type="entry name" value="AWPM-19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8612" checksum="611AB3AD1E2597D4" modified="2018-12-05" version="1">MGLACKQIHIGGHRGWRLRMVEAFIIILTFTQLLYLLLIHAGLFNNRYGPGYRDTDYGVGGAATGDPMHKGAPVGGTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4V6</accession>
    <name>A0A392P4V6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Sodium-coupled neutral amino acid transporter 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064169">
        <property type="protein sequence ID" value="MCI07091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031090">
        <property type="term" value="C:organelle membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015179">
        <property type="term" value="F:L-amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950">
        <property type="entry name" value="AMINO ACID TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22950:SF643">
        <property type="entry name" value="AMINO ACID TRANSPORTER AVT6A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="9">
        <location>
            <begin position="50"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI07091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="16106" checksum="B2F99B95A9A8FDAE" modified="2018-12-05" version="1">MTIGSLAPKTEKKKSSRKNKNKAIVSENAPLLPKSQAHESDSGFDDFNGASFSGAVFNLATTIIGAGIMALPATLKQLGLIPGLAAILIMAFLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALAQICVIVNNXXXXXXXXXXXXXRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P540</accession>
    <name>A0A392P540_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Butyrate-CoA ligase AAE11 peroxisomal-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063400">
        <property type="protein sequence ID" value="MCI06882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P540"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031956">
        <property type="term" value="F:medium-chain fatty acid-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.30:FF:000008">
        <property type="entry name" value="2,3-dihydroxybenzoate-AMP ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859">
        <property type="entry name" value="ACYL-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859:SF2">
        <property type="entry name" value="BUTYRATE--COA LIGASE AAE11, PEROXISOMAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding enzyme C-terminal" evidence="7">
        <location>
            <begin position="99"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="200"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI06882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="25034" checksum="92EDCC272D7ADAB2" modified="2018-12-05" version="1">MLKARQGVSVLTLADVDVKNLKTMESVARDGETMGEIVLKGSGIMMGYFKDNEATAKAFGDGWFRTGDVGVIHKDGYLEIKDRSKDVIISGGENISSVEVENVLYMHPKILEAAVVAMPHPKWGESPCAFVSLKKNEDGKKSDFFTVTEDEIIGHCRKNLPHFMVPKKVVFMEELPKNGNNKIPKNELRVKAKSFVVNDEENKNKKTNNQVNQNNHQILAMSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6E4</accession>
    <name>A0A392P6E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ty-3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063854">
        <property type="protein sequence ID" value="MCI07009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="105"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="219" mass="24865" checksum="F879106A2C47E91A" modified="2018-12-05" version="1" fragment="single">KDWNSHMKHLREVLELLRIHSLYANKKKCNFAQKSVEYLGHLVTGEGVAVDPNKVISVLQWPQPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKDNFKWNEQAQLAFEVLKAKLTSAPVLALPDFSKSFVIECDASGTGLGAILMQDKRPVAYFSKALGVRNLTKSAYEKELMAVVLAIQHWRPYLLGRKFVVSTDQKSLKQLMQQKIVTAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PB97</accession>
    <name>A0A392PB97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072431">
        <property type="protein sequence ID" value="MCI09378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PB97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="74"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="23279" checksum="9BB26D4304741FA4" modified="2018-12-05" version="1" fragment="single">MPSKELPFLFCYFDSKGEFSDLFNQLGAFISLLQRCWLRDLQRWNLRKPMIRLIGDSLNICSKGVVFAKKWIGWMRVCVFAGNLSVLVNGSTTPEINIQRGLKQGDPLAPFLFLLVVEGFSGVMRKVVDLNLFKGFTIGEEPILISHLQYADDTLCIGEASVGNLWTLKAILRGFELASGLKVNFWKSGLCGANVSTTFLEIACIFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PI70</accession>
    <name>A0A392PI70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079773">
        <property type="protein sequence ID" value="MCI11337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16627" checksum="48BD570D2C1E5147" modified="2018-12-05" version="1">MGIKEKVVKPLNPLQIRYEEHLYCKGFPVISEADDEEVIQFFMEGLKKETGIDVPRDMKARRKKIEEKEEEKKEEKKEEKKEKKKEVKIAEKKEVAKKEVSRKRKAEXVKLDEEEARSKKKHKKKVSKDDSGTESDDRTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLA7</accession>
    <name>A0A392PLA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Homeobox-leucine zipper protein ATHB-14-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082711">
        <property type="protein sequence ID" value="MCI12086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044830">
        <property type="entry name" value="HD-Zip_III"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45950:SF7">
        <property type="entry name" value="HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13192" checksum="9C95373544BBD967" modified="2018-12-05" version="1" fragment="single">ALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAVNSSPNKFLGSNYSTMFPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLH8</accession>
    <name>A0A392PLH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085057">
        <property type="protein sequence ID" value="MCI12654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12742" checksum="2C980CE0785A0A56" modified="2018-12-05" version="1">MHRLAQFPRLRLKESYLHPRSRGGAIDSVGIAMPPSLRPLWGGLQPAVPICFPVQFNTVDRRRHRVIHIHDSSRKGQFSGPCFHDSWHRKGQTRLDGRRQCCLKPAKKSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNG4</accession>
    <name>A0A392PNG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative RING/FYVE/PHD zinc finger protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089029">
        <property type="protein sequence ID" value="MCI13643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11665" checksum="B1A0F6407A60A5F6" modified="2018-12-05" version="1">MSMKGSHECCEQFEVGIPSLELALGGEMKQSKNGTLPFLAGKADKKNNQEKTPDCLETKQEDDDSIAASLSLSLSFPSSNKESTIPASKDEHHMNSSLLLFGRFTDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRV0</accession>
    <name>A0A392PRV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092311">
        <property type="protein sequence ID" value="MCI14412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009881">
        <property type="term" value="F:photoreceptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.20">
        <property type="entry name" value="PAS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="PYP-like sensor domain (PAS domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0157">Chromophore</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0600">Photoreceptor protein</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0716">Sensory transduction</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="5">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI14412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15704" checksum="52DC64908631D03F" modified="2018-12-05" version="1" fragment="single">NPSAENLYGHTAEEVLGHDGIEVLVDPSEFDLASDIFNRVKMGESWTGQFPVKNKMGDKFVVVATNTPFYDDDGSLIGVICVSSDSRPFLENIVPFSVGKKEEKDSGVNFPRIAITNKLGLDPQQPLQNALASKISNLVCFKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTM6</accession>
    <name>A0A392PTM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">31 kDa ribonucleoprotein chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096484">
        <property type="protein sequence ID" value="MCI15443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901259">
        <property type="term" value="P:chloroplast rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050502">
        <property type="entry name" value="Euk_RNA-bind_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48025">
        <property type="entry name" value="OS02G0815200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48025:SF9">
        <property type="entry name" value="OS02G0815200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="25"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI15443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10020" checksum="48C76151EE91DC67" modified="2018-12-05" version="1" fragment="single">MGRHLRVNFSDKPKPKESLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTU9</accession>
    <name>A0A392PTU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094076">
        <property type="protein sequence ID" value="MCI14870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16891" checksum="65E4F652018C2F4B" modified="2018-12-05" version="1" fragment="single">MEDVYSLLINSFKEQKSISSALDWFSALWKARRLNHPLCCSPISESFIPHLSEQLHQRSSTLFKDASDERYFVEKLSKDEASTFGLAYAHLERSRQEASTGDVDEALMQALKSHEHFSKIVSETQEITFKGVEACLVENREIDFKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVG2</accession>
    <name>A0A392PVG2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094332">
        <property type="protein sequence ID" value="MCI14925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="77"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18736" checksum="5BF6A3BF048A6DD4" modified="2018-12-05" version="1" fragment="single">MPHWPTLDGIQFAEVSTEDNPCLSAPFSMEEVEVGLASYDGNKSPGPDGFNFSFFKLTWSILKDDVLVMFQQFPLGIGDFRSISLLGSLYKLVAKVLASRLATVMDKLISRNQLAFIKGRHLVDRVVAVNEIIDLAKKFGKDCLIFKVDFEKAYDLVLRRSGVVGFVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW59</accession>
    <name>A0A392PW59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaJ</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097521">
        <property type="protein sequence ID" value="MCI15680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PW59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030544">
        <property type="term" value="F:Hsp70 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044713">
        <property type="entry name" value="DNJA1/2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43888">
        <property type="entry name" value="DNAJ-LIKE-2, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11261" checksum="EB2761BD9D925C92" modified="2018-12-05" version="1">MPIYQRPFMKGKLYIHFTVEFPETLTPDQVKGLEAVLPAKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQQQEAYDEDDDMPGGAQRVQCAQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXA6</accession>
    <name>A0A392PXA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102007">
        <property type="protein sequence ID" value="MCI16691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4414" checksum="7424B92A8708CB49" modified="2018-12-05" version="1" fragment="single">MISLLANLVKSSGLVRLELKSEDRQKRRYVASRQGPTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZ34</accession>
    <name>A0A392PZ34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102517">
        <property type="protein sequence ID" value="MCI16809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZ34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12090" checksum="BB9DFF65B6101F41" modified="2018-12-05" version="1" fragment="single">PPVAHSASSRDVLRTSVPQVIEVTGSESPSTFGWTARNNRVRQELSRARIRAIENSLENGQGWVPPSSAHRKTWEEEIYFFLLQSSRTANLDGASSSSYATGTHREGFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1S9</accession>
    <name>A0A392Q1S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105801">
        <property type="protein sequence ID" value="MCI17526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="19"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9292" checksum="31594A5E5DE69E2E" modified="2018-12-05" version="1">MASTSGATKRSPSPPQSQPQPQSSPRDPFQPKTNRPPRFEQDLKLIHGFELQEDALKILYLTDCTKILSVVGMMSFSSTLSLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q285</accession>
    <name>A0A392Q285_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108089">
        <property type="protein sequence ID" value="MCI18012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7739" checksum="99489607AAC813E5" modified="2018-12-05" version="1" fragment="single">VALLHYVSASGPIPRAAGXXXXXXXXXXXXXXXRETLVQFSLLFSSDGVSHKALSDFLGSELAKVLRALSRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2F4</accession>
    <name>A0A392Q2F4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">AP2-like ethylene-responsive transcription factor ANT</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108435">
        <property type="protein sequence ID" value="MCI18082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q2F4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32467">
        <property type="entry name" value="AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32467:SF235">
        <property type="entry name" value="AP2_ERF DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="7">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="136"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI18082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="199" mass="22194" checksum="32A82BFA0E2CD344" modified="2018-12-05" version="1" fragment="single">TQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLSIDLARRNKEVVDTTQHIDQNKPNSSAYDNNTQEAILMQKNMVLYQSSQQQNQPRIENERTHQSFSSVSFDNMFHQEVVEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGIMPSTGSKLLATNAPNSNVNSWDPSHHLRTQMPVFAAWTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6R0</accession>
    <name>A0A392Q6R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Auxin response factor 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115462">
        <property type="protein sequence ID" value="MCI19577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6R0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009725">
        <property type="term" value="P:response to hormone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044835">
        <property type="entry name" value="ARF_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384:SF136">
        <property type="entry name" value="AUXIN RESPONSE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384">
        <property type="entry name" value="AUXIN RESPONSE FACTOR 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02362">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="6">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI19577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12590" checksum="BDDCD569FD8180D7" modified="2018-12-05" version="1" fragment="single">MNAGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKSSSNFSSISGQQLNLGSLTDIVNALSTRCAFNIHYNPRIGSSEFIIPMHKFLKSLDYSYSVGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QI09</accession>
    <name>A0A392QI09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133178">
        <property type="protein sequence ID" value="MCI22935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QI09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12113" checksum="DEFA5064897DDEA9" modified="2018-12-05" version="1" fragment="single">MVCLRTARTPYSRPAQPPPHVLCTPDPPGSQLLVPNRLSLFVFSTTRFIISGARKVLLSFFDLNSSSSSSSSSSSATSTSSSFSYADSLAATNARDILKVPDDISSYHIIQGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKY2</accession>
    <name>A0A392QKY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cation/H(+) antiporter 15-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010142189">
        <property type="protein sequence ID" value="MCI24567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098662">
        <property type="term" value="P:inorganic cation transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006885">
        <property type="term" value="P:regulation of pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057290">
        <property type="entry name" value="CHX17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050794">
        <property type="entry name" value="CPA2_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468">
        <property type="entry name" value="CATION/H + ANTIPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32468:SF74">
        <property type="entry name" value="CATION_H(+) ANTIPORTER 21-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23259">
        <property type="entry name" value="CHX17_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation/H(+) antiporter C-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF23259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI24567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20270" checksum="FBEE23D3DCC672B4" modified="2018-12-05" version="1" fragment="single">GGVDDREALSYAWRMSRNMEVKLTVVRLVWDSPDDEFDELDREYLRAFVYQTNDTPTVRYLEKVVKDEKETVRLLNRIGNKGFDLYIIGRGHGRKMPLAQTLDPVLDEPVFGPLGDTLTDLNSAAKTSILIFQKQAESNDSKKHEYNASATSSQFLDGVMDQQQQVYTPAVSFGPNFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLI2</accession>
    <name>A0A392QLI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010143561">
        <property type="protein sequence ID" value="MCI24787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11065" checksum="C70759041FC0414B" modified="2018-12-05" version="1">MWDSSEVEVWSSTSREHVLWCHGRFLKSDEEFFLANVYAPCEQGVTQTLWDSLSGRIQLLNGERVCVCGDFNAVRSIEERRSSREGPRSSDHIPFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPS7</accession>
    <name>A0A392QPS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010147746">
        <property type="protein sequence ID" value="MCI25536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="24"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14338" checksum="06BB0DF9C69026B1" modified="2018-12-05" version="1" fragment="single">MQTSLYTSVRDDKLVWKLEQDGVYSVCSAYKQCVNVAGYQDRHGVAGQWDNIWRAKIPPKVKNLIWRIGRDILPTRKKLTSRGVQCPMHCDACNDGDEDSMHVLFLCTRSIQCWQRAGLWAHISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPY3</accession>
    <name>A0A392QPY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010150952">
        <property type="protein sequence ID" value="MCI26037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7768" checksum="265BA2007DACA0C7" modified="2018-12-05" version="1">MKQEHIYSRARALRRDCRALRSQQKQKLLQHSTGALRHEPGAPCAINSNNTRFSSSSIFQGKSQQEPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSB7</accession>
    <name>A0A392QSB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153140">
        <property type="protein sequence ID" value="MCI26416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="19228" checksum="00368B07D52FA9CA" modified="2018-12-05" version="1" fragment="single">ITIVEEWGTTLGDDCLFDDETASEACHSDDEVAQCDPEASNNVDMFVAKIAEDLEAELEEEERPAQCVEADGKAQRQQADIANKEVGSESENEQIQCFGSQDRDSQVDPVIPSQDIPRESSAGDKEHEVLSLVHGEPCVGNPDKARGVPGKDPGSEEMRGSDAQLISRKRTQSCPPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX10</accession>
    <name>A0A392QX10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative heat shock protein 70 (HSP70)-interacting protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168739">
        <property type="protein sequence ID" value="MCI28893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044517">
        <property type="entry name" value="PHOX1-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46183">
        <property type="entry name" value="PROTEIN CLMP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46183:SF8">
        <property type="entry name" value="PROTEIN CLMP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17065" checksum="E0A35241204B207E" modified="2018-12-05" version="1" fragment="single">MKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQXLRAAFGHRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGANSAVGSVVSPNSKIDKSQNVLLSNENGPETKTQLPKVVLKPFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYK6</accession>
    <name>A0A392QYK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167142">
        <property type="protein sequence ID" value="MCI28660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5587" checksum="3FFE916C30947680" modified="2018-12-05" version="1" fragment="single">MPFEQHNPGAFIYKLGSIPGPARIAFCKAAAHIRPQAIAGSARIRPEAVTVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYQ0</accession>
    <name>A0A392QYQ0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010170299">
        <property type="protein sequence ID" value="MCI29099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000294">
        <property type="entry name" value="Serine/threonine-protein kinase OXI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45637">
        <property type="entry name" value="FLIPPASE KINASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI29099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10319" checksum="8C3731A1DB5231F8" modified="2018-12-05" version="1" fragment="single">MKAYNLYENNFTLCYLLFYVAEVLLALEYLLMLGILYRDLKPKNVSVREDGHIMLSDFDLSLRCSVSPTLVKSSNPIAETKSSGYCIQPAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1W8</accession>
    <name>A0A392R1W8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010180684">
        <property type="protein sequence ID" value="MCI30578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1W8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9364" checksum="1513E906CA4FFD5A" modified="2018-12-05" version="1">MASASHNQGDVDHDTVPPSPPREYNTVLSPVANNQEPSPVDNTGDPRDGRETSLSSDDGEGVQILTERQLEKRPQSTQEIPVDSVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R271</accession>
    <name>A0A392R271_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181380">
        <property type="protein sequence ID" value="MCI30678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="17"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10192" checksum="0605A185F5159746" modified="2018-12-05" version="1" fragment="single">PNVIDMLLWRSWHSYVFTVKGAYQSLMHAEEVVEPVLSSTALVWNKVVPAKVSIFXXXXXXXXIPTHDNLFKRGVVWRSPVVRDSECFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R442</accession>
    <name>A0A392R442_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010183876">
        <property type="protein sequence ID" value="MCI30999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R442"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6212" checksum="702A587081154AB4" modified="2018-12-05" version="1">MMDVSEVEESFFAASDAKLENQSDYQSFVGPVVIDAGLGREDHGLISGNCDRDEAGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4E3</accession>
    <name>A0A392R4E3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010184676">
        <property type="protein sequence ID" value="MCI31099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4E3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051707">
        <property type="term" value="P:response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001023">
        <property type="entry name" value="Os07g0541700 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000621">
        <property type="entry name" value="Putative L-type lectin-domain containing receptor kinase VII.2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050528">
        <property type="entry name" value="L-type_Lectin-RKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27007">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0430">Lectin</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="14"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI31099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="156" mass="17854" checksum="69220604670B35EF" modified="2018-12-05" version="1" fragment="single">RISFEEIHAATRGFSEENLIAVGGNGKVYKGILQGIEVAVKRIPQEREDGMREFLAEVSSIGRMKHRNLVGLRGWCKKEKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7V0</accession>
    <name>A0A392R7V0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190678">
        <property type="protein sequence ID" value="MCI31860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7V0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8308" checksum="90FD738EB9936412" modified="2018-12-05" version="1" fragment="single">APFSSPQAKSRSLRTGTTTNLRPRRQNLAPGEISRSILASVIRPRRQFLRLGRFFQNQSCYPLRSFASGANSMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF55</accession>
    <name>A0A392RF55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217691">
        <property type="protein sequence ID" value="MCI34847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019557">
        <property type="entry name" value="AminoTfrase-like_pln_mobile"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10536">
        <property type="entry name" value="PMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotransferase-like plant mobile" evidence="1">
        <location>
            <begin position="23"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="14036" checksum="40EEDDBE0F4C482B" modified="2018-12-05" version="1" fragment="single">AALAAELLGVDYEFALEETSGKRGGYFTQQWLYECYQRNTHYYVRYDCAIREYMLLLVGHTILTDKSYTRVDAKWLPMFRDLSACHRFSWTTTALVSLYDNLNDASMFTTKSLAGYAILLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFK1</accession>
    <name>A0A392RFK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222907">
        <property type="protein sequence ID" value="MCI35393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9193" checksum="E66CF867F39E0065" modified="2018-12-05" version="1" fragment="single">MPLTTGTKPRTVLKFSTPLVGVTLHTFVASTVVAPTSASNDLRSYFLLSSRSYCVLTARPPWSASVLNRNTLPTMHDTELIRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGF1</accession>
    <name>A0A392RGF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010226059">
        <property type="protein sequence ID" value="MCI35698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2371" checksum="7B1FC0A5078DC75B" modified="2018-12-05" version="1" fragment="single">PSTPAAEDSGGPSEKELCLKLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKR0</accession>
    <name>A0A392RKR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serrate RNA effector molecule-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010237302">
        <property type="protein sequence ID" value="MCI36782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016604">
        <property type="term" value="C:nuclear body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031053">
        <property type="term" value="P:primary miRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039727">
        <property type="entry name" value="SE/Ars2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021933">
        <property type="entry name" value="SERRATE/Ars2_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13165">
        <property type="entry name" value="ARSENITE-RESISTANCE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13165:SF0">
        <property type="entry name" value="SERRATE RNA EFFECTOR MOLECULE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12066">
        <property type="entry name" value="SERRATE_Ars2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SERRATE/Ars2 N-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6486" checksum="0C7DA5703041790B" modified="2018-12-05" version="1" fragment="single">IQELEDDILPSEAERRYQEYKSEYVTTQKRAYFNAHKDEAWYAIFPTAEILIDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQC9</accession>
    <name>A0A392RQC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010248206">
        <property type="protein sequence ID" value="MCI37775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051714">
        <property type="entry name" value="Znf_CCHC_NABP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23002">
        <property type="entry name" value="ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="39"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="59"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="13"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI37775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12752" checksum="85779A1CA79334C1" modified="2018-12-05" version="1" fragment="single">QNRGRQGTRPYNRPQNNRGSNRSANQGTRGNQVREKQTCYKCGEEGHYANECGNQGPTCFNCKNPGHFVRDCKAPRVEPPATVTQGGRPTTKGRVCCMGTEVSGQAGNAIHEDCQIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZV6</accession>
    <name>A0A392RZV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010294327">
        <property type="protein sequence ID" value="MCI41614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7716" checksum="B4FC6611410586DD" modified="2018-12-05" version="1" fragment="single">GSPLTVHVTEPLQLPVVQLKYLVPGTILHRVRPQIRPLAKPEGSLIVDFSPDFKTIPVSGILEAGTAAVHTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0P8</accession>
    <name>A0A392S0P8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mitochondrial protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301943">
        <property type="protein sequence ID" value="MCI42229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0P8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="95" mass="11083" checksum="D307D23D55E4EE7D" modified="2018-12-05" version="1" fragment="single">GPQRTARKVLDSGFFWPTLFKDAFETYRNCEQCQRAGTNITRKSEMPQQPMLFCEVFDVWGIDFMGPFPVSFGFLYILLVDYVSKWVEAIPTRTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S184</accession>
    <name>A0A392S184_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010306616">
        <property type="protein sequence ID" value="MCI42608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S184"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6748" checksum="3F91E0317F50D559" modified="2018-12-05" version="1" fragment="single">LARKYFSRAPLEQMDFIASTICSFSRTLPVSQALLSPLQLYQPQLSPLAMSLVTQSLYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S315</accession>
    <name>A0A392S315_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010306490">
        <property type="protein sequence ID" value="MCI42594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S315"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6912" checksum="01977F272B69EBB5" modified="2018-12-05" version="1" fragment="single">RLSKLGQSRMITLGEDLQRIIPLHTIFNSGKLHNFNVVNLGSVMMELSLSSLLITANISFIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5Y4</accession>
    <name>A0A392S5Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010319606">
        <property type="protein sequence ID" value="MCI43594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7474" checksum="D423C2B0C84949FB" modified="2018-12-05" version="1" fragment="single">MVNQVEALCLKGESVKALNNNLHGLQVARDAPKITHLLFADDSLLFARANQKEADSINRALHSYQIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8N7</accession>
    <name>A0A392S8N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin-protein ligase XBAT31-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010335756">
        <property type="protein sequence ID" value="MCI44822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8619" checksum="4C1906A3E8B5E936" modified="2018-12-05" version="1" fragment="single">MKHRHGSCASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANKEREQNILKGKVYSLPSPSQSDCVDDNISE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDH3</accession>
    <name>A0A392SDH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010354606">
        <property type="protein sequence ID" value="MCI46244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF1">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12585" checksum="A5C4652C0263F6F7" modified="2018-12-05" version="1" fragment="single">REVLEEFPDEKLLMVQERPWFPDMANYKASGVIPDDLRWHQKKKFLREANQYVWDDPYLFKIGADNLLRRCVTKEEATSIMWHCHNAPYGGHYNGARTAAKVLQSGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIQ5</accession>
    <name>A0A392SIQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010391095">
        <property type="protein sequence ID" value="MCI48751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4970" checksum="54681C98E5E18993" modified="2018-12-05" version="1" fragment="single">QESQISEIIQAQKIMAAKQDGMAAKQDAMSADLKAILAILSQNRNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJ60</accession>
    <name>A0A392SJ60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010389926">
        <property type="protein sequence ID" value="MCI48679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJ60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5808" checksum="906A5E3027BB0C74" modified="2018-12-05" version="1">MIQEKTRASQSRQKSYADKRRKDVEFQEGDHVFLRVTSTTGIGRALNPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKV0</accession>
    <name>A0A392SKV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010402036">
        <property type="protein sequence ID" value="MCI49493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8245" checksum="9691ACA1D8A4A56A" modified="2018-12-05" version="1" fragment="single">MYVPLSVPVTTSDKATPETVDESVKEKIVTSVDAVQDGEASKDRSNPTAAAQDVEASKALSNPNDAAITESFGSSSESKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPX9</accession>
    <name>A0A392SPX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010413763">
        <property type="protein sequence ID" value="MCI50254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9373" checksum="E9EAD277E2DF96A2" modified="2018-12-05" version="1" fragment="single">MTNAEASVPAQNVFPDTHEQAVIPEKEKSRDQGMIGNDTDDNTGVISKSDENLKTASEHIEKTVSVDKNNDADENVIDVDNFIVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS66</accession>
    <name>A0A392SS66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Structural maintenance of chromosomes protein 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010429402">
        <property type="protein sequence ID" value="MCI51272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6495" checksum="7758FBCE2DB7284B" modified="2018-12-05" version="1" fragment="single">MEHVEQISIQVQQLKKKLAWSWVYDVDKKLEAQNVTIEKLKSRVPTCQAKIDKQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SU45</accession>
    <name>A0A392SU45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430948">
        <property type="protein sequence ID" value="MCI51386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SU45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2824" checksum="CF2F56AC07D90F88" modified="2018-12-05" version="1" fragment="single">VYENNFSSVEAKSPFGSTKGRGGEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SWU3</accession>
    <name>A0A392SWU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010461452">
        <property type="protein sequence ID" value="MCI53321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SWU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8744" checksum="551F046D20CF6E28" modified="2018-12-05" version="1" fragment="single">DNARLRCCRAFSHSSVHSNADSFLNSLNNGNACWADFATKRDRAVNIPFNDCIDFFESGVGNSKKALHLSGLASIPRSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SXX8</accession>
    <name>A0A392SXX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010467044">
        <property type="protein sequence ID" value="MCI53673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SXX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3399" checksum="B017F09A74C603DC" modified="2018-12-05" version="1" fragment="single">VCQRVAHASGEKRSSFCQLRIAQVLLARCAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYI7</accession>
    <name>A0A392SYI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010464682">
        <property type="protein sequence ID" value="MCI53532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8379" checksum="8682B58C8E8CBFC8" modified="2018-12-05" version="1" fragment="single">MRSDGETSTHKQTKTIGGPKTQTQPFRRGLHKLRNLNPPAKKPRTRPTNSSMKPQLEIGARLSGGAEDGSHSSHHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T144</accession>
    <name>A0A392T144_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010486023">
        <property type="protein sequence ID" value="MCI54833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T144"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7254" checksum="CCD97AC918C26835" modified="2018-12-05" version="1" fragment="single">MDWEIWDKFLRSVDLSGDVIGIVWRNLGSCRRFVLMSADFEWWWRENGGVTVDVEMEGETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4H0</accession>
    <name>A0A392T4H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010492249">
        <property type="protein sequence ID" value="MCI55195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4977" checksum="EF6C453C1925AA80" modified="2018-12-05" version="1" fragment="single">FWMGFELKPPQNIMFCVRSPGEDHDVARRDVATMSPVLARSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9T8</accession>
    <name>A0A392T9T8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010536349">
        <property type="protein sequence ID" value="MCI57861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7518" checksum="0EED382C6C8F82B3" modified="2018-12-05" version="1" fragment="single">CLREELGGLGVRQLREFNTALLGKWCWRMLTDKTGLWYRVLRARYGEEAGRVSVGGGGQSGSSWWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAJ6</accession>
    <name>A0A392TAJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010537082">
        <property type="protein sequence ID" value="MCI57912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI57912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8378" checksum="A0B25F3CB240DEFC" modified="2018-12-05" version="1" fragment="single">MSLTQLTRKNQPFVWDKNCEERFQELKRRLMSTPVLVLPNANEPFEVYCDASQMGLGGVLMQKGKVVAYASRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCD3</accession>
    <name>A0A392TCD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010535424">
        <property type="protein sequence ID" value="MCI57806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10379" checksum="262FBA549186ED12" modified="2018-12-05" version="1" fragment="single">NNRSFAEVVQKDNIVQGKADPRRRDNHSVKETDLIRFNVEQEELIKLSKLYVGEVEHPGSTYNVQDALHAEGYFGIKVTPLGANLALLEEQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDB2</accession>
    <name>A0A392TDB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010542412">
        <property type="protein sequence ID" value="MCI58210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6626" checksum="08337C9C1CD4D8B4" modified="2018-12-05" version="1" fragment="single">MRTTKATGTTGMTDAEGEDGTQKTPLPMNTGVAVTTTMRTDMEEGEAVTLEKLHSPPGFWNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEI1</accession>
    <name>A0A392TEI1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010552032">
        <property type="protein sequence ID" value="MCI58807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8993" checksum="2119F6DAE2338640" modified="2018-12-05" version="1" fragment="single">MILEEGHRSSLSIHPGVTKMYNDLKKMFSWPGMKREIAEFVYACLTCQKSKVEHQKSSGLLQPMFILEWKWDSIAMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGE2</accession>
    <name>A0A392TGE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010577175">
        <property type="protein sequence ID" value="MCI60193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3974" checksum="0F9804DE796695F9" modified="2018-12-05" version="1" fragment="single">GKGKKTHSPRDEEPVRKKRSTRGQASGEGGSSQQQPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THL8</accession>
    <name>A0A392THL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575244">
        <property type="protein sequence ID" value="MCI60094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2887" checksum="A98067C56402129C" modified="2018-12-05" version="1" fragment="single">LMRDGLSGAGAARIPSSKRYTHPTKCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ06</accession>
    <name>A0A392TJ06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010581072">
        <property type="protein sequence ID" value="MCI60417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9100" checksum="84D21306024C34C8" modified="2018-12-05" version="1" fragment="single">KVAAALGASGSTPSGTPSGQGSPARSIEIIEKRGRDGDLEDVSSRKNPRLDTVGGSAGPHRLTPRHPTEDFVLPPAFGHSPLFDGQTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJG4</accession>
    <name>A0A392TJG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010593866">
        <property type="protein sequence ID" value="MCI61118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="53"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9274" checksum="14DBF4046787D07C" modified="2018-12-05" version="1" fragment="single">NPMEFIENVVNIMGDLSSFGGVSTEELQRRSLGHVLKGLLLTYLMSSRQEQEVTEVKNKMKVVDENLAGIEKEYAATKEKLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN05</accession>
    <name>A0A392TN05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010607392">
        <property type="protein sequence ID" value="MCI61837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6519" checksum="D4A04CC9714C78A7" modified="2018-12-05" version="1" fragment="single">MKIEELQSSLEAHELMVFDRGSERSNQHALQAQTNKKYGNSKNVKKKGKGKTNWSNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP26</accession>
    <name>A0A392TP26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010622862">
        <property type="protein sequence ID" value="MCI62658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="9"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9999" checksum="DC774A1A476825C6" modified="2018-12-05" version="1" fragment="single">IGVDGVAIVWDTFKREFLRKYFPADVKNKKVIEFMELKQGNLPVAEYSAKFEALCVFSPHYNTVEVEEDKCVKFESGLRPDIKLLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP88</accession>
    <name>A0A392TP88_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Arabinogalactan peptide 23-like</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010625702">
        <property type="protein sequence ID" value="MCI62802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044702">
        <property type="entry name" value="AGP23/40"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34672:SF2">
        <property type="entry name" value="ARABINOGALACTAN PROTEIN 23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34672">
        <property type="entry name" value="POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017193247" description="Arabinogalactan peptide 23-like" evidence="2">
        <location>
            <begin position="23"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI62802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="61" mass="5952" checksum="BD479C87FF68AA19" modified="2018-12-05" version="1" fragment="single">MDMKKVTFAVLVAAASMSAVMATTPEVSVSAPAPGPGSSSASTTVVGSLVGASLLSFFALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW70</accession>
    <name>A0A392TW70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010661109">
        <property type="protein sequence ID" value="MCI64687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7069" checksum="C2F724170B9B9DBE" modified="2018-12-05" version="1" fragment="single">QEINTNAQRNAHLAIPLRSKICSTRTFPFQAAKERGCVRMDRGMRASPSALKKGPVQTSGLIATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZX9</accession>
    <name>A0A392TZX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein 16</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010686337">
        <property type="protein sequence ID" value="MCI65984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4094" checksum="DD642C60836F80D4" modified="2018-12-05" version="1" fragment="single">MVVSRDGKWLASFTHDGRLLVTTSDLTDVIIERECE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U159</accession>
    <name>A0A392U159_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010690930">
        <property type="protein sequence ID" value="MCI66210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U159"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4612" checksum="3FF4DE0E80DC3B29" modified="2018-12-05" version="1" fragment="single">MIVAEYAAKFESLSVFSPYYNTPEAEYDKCTKFESGLRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6F7</accession>
    <name>A0A392U6F7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag protease polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010727807">
        <property type="protein sequence ID" value="MCI67976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6F7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6773" checksum="9C8F4AC19C14B8DC" modified="2018-12-05" version="1" fragment="single">MERTNQSLEDLLRAYVLDDRGSWDDVLPLIEFTYNNSYHASIGMALYEALYGRRCQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8Y2</accession>
    <name>A0A392U8Y2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010766192">
        <property type="protein sequence ID" value="MCI69969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8Y2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4892" checksum="9B5A78ACF2522AFE" modified="2018-12-05" version="1" fragment="single">MSQLKMEGEQLSPSCSNQLEMLNIKEENKALWVRRWGKNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC58</accession>
    <name>A0A392UC58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010766920">
        <property type="protein sequence ID" value="MCI70006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4680" checksum="46A13FD55855AC94" modified="2018-12-05" version="1" fragment="single">CGSPPQYYTYTTQPAVSATVVNVCAVVPALEKDCCAVVPTMEGCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UH62</accession>
    <name>A0A392UH62_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010788809">
        <property type="protein sequence ID" value="MCI71065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UH62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="43" mass="4989" checksum="13A37650B4F8FA68" modified="2018-12-05" version="1" fragment="single">MNTKQVKESLKERAEVFVMFASLKLESEVKMEELPVVCEFPDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJS3</accession>
    <name>A0A392UJS3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832002">
        <property type="protein sequence ID" value="MCI73138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4159" checksum="3EBA9664C3B26035" modified="2018-12-05" version="1" fragment="single">VMAQRALADAMELMANAIAQEAVSRTADRVAQEARRGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULL5</accession>
    <name>A0A392ULL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010843270">
        <property type="protein sequence ID" value="MCI73647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6353" checksum="A9945C0EBD4BC84F" modified="2018-12-05" version="1" fragment="single">DARKLELPLFVAQRAGVLAQRAVEALGSWIGSGLGAMCGPGWCNARFGEQVWLWPLSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPS8</accession>
    <name>A0A392UPS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010883145">
        <property type="protein sequence ID" value="MCI75452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3221" checksum="7A9B02C6EA51FA42" modified="2018-12-05" version="1" fragment="single">VRALVGSDPRYAIISMADELSEKANKEVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UU62</accession>
    <name>A0A392UU62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Maturase K</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010880061">
        <property type="protein sequence ID" value="MCI75325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UU62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6675" checksum="10C95084AA39CDBD" modified="2018-12-05" version="1" fragment="single">MTSRMLKWSLELAEFEIHYESRKALKAQVLADFVAEMTNPSTPEKNKWTIFVDGSSNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUZ2</accession>
    <name>A0A392UUZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative carboxylesterase 18-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDXG' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010982346">
        <property type="protein sequence ID" value="MCI79838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha/beta hydrolase fold-3" evidence="2">
        <location>
            <begin position="3"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI79838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6236" checksum="A12B54C09A6F52C5" modified="2018-12-05" version="1" fragment="single">MARTDWLWKVFLPEGSDRDHGAANVSGPNAEDLSGLEYPDTLVFVGGFDPLNDWQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V3F5</accession>
    <name>A0A392V3F5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011019804">
        <property type="protein sequence ID" value="MCI81465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V3F5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4475" checksum="C6AB8ECBF719B736" modified="2018-12-05" version="1" fragment="single">SESSDSEGSDSEDCTSSDSEGSDSEDCTSSELLTLKTVQVLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4L3</accession>
    <name>A0A392V4L3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011060578">
        <property type="protein sequence ID" value="MCI83164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4L3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5387" checksum="2C0BE54ED3CDB100" modified="2018-12-05" version="1" fragment="single">MGDSLQDITVQVEQTVHQIQQNKVLHDDVQPVVQLDVIQCDTSLDESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6Q7</accession>
    <name>A0A392V6Q7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011035971">
        <property type="protein sequence ID" value="MCI82140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6Q7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6436" checksum="5527F6E4F91634AB" modified="2018-12-05" version="1" fragment="single">AAPSRSSLRRSNSSLSISSFTSPSIGISVLKDVDPVSTGITASVPYVKRKCVSPVVECGVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJX6</accession>
    <name>A0A392VJX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011187362">
        <property type="protein sequence ID" value="MCI88217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5820" checksum="039C3329046768DA" modified="2018-12-05" version="1" fragment="single">TRGVGTLEDASSSSRNAAREEQKVETLKVIAFSYIYSLYTGTAPASPRDTPLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLB1</accession>
    <name>A0A392VLB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011185787">
        <property type="protein sequence ID" value="MCI88169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6662" checksum="A2415EC503B90095" modified="2018-12-05" version="1" fragment="single">MACCAVHSAAAGFLSVSCAARRMKWRGAQLENSKQNVHNGYLRVAQGIWRGAPARGFEEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUI6</accession>
    <name>A0A392VUI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011289894">
        <property type="protein sequence ID" value="MCI92064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45643">
        <property type="entry name" value="REVERSE TRANSCRIPTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45643:SF11">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5177" checksum="B5545AAFE2655A65" modified="2018-12-05" version="1" fragment="single">WMKEISFLGHVISGEGIDVDPAKVEAVLQWSTPEYVTEIRSFLGLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYL4</accession>
    <name>A0A392VYL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutamine-dependent NAD(+) synthetase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011275235">
        <property type="protein sequence ID" value="MCI91550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090:SF9">
        <property type="entry name" value="GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017262938" evidence="2">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI91550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4295" checksum="7E7F53B3D23799F6" modified="2018-12-05" version="1" fragment="single">MVLAFMLATLLPWVNNKPGIYLVLGSSNVDEGLRGYLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0N9</accession>
    <name>A0A392W0N9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011295296">
        <property type="protein sequence ID" value="MCI92260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0N9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1821" checksum="C2269E4033E457A9" modified="2018-12-05" version="1" fragment="single">TRNIPRKAAPGAEKAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6N9</accession>
    <name>A0A392W6N9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011411139">
        <property type="protein sequence ID" value="MCI96304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6N9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4959" checksum="A863A94D4AD33E05" modified="2018-12-05" version="1" fragment="single">VIIDAIPSKEVKPKVAINSNKQPNVEEKPVKKQPKVDAKPAKEQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7J2</accession>
    <name>A0A392W7J2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011419983">
        <property type="protein sequence ID" value="MCI96638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="40" mass="4718" checksum="230BB9069511454C" modified="2018-12-05" version="1" fragment="single">IVQGKDETLRDYIERFTREEVKVNGVDDKFKCEELIAAEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9P3</accession>
    <name>A0A392W9P3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011415345">
        <property type="protein sequence ID" value="MCI96462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9P3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7495" checksum="C2169576F4C7C54F" modified="2018-12-05" version="1" fragment="single">LSWHDGPVSYHDRVKLLKKLTVGNSSSWHYVPVSYHDAAPDFEKMAVTHRTTMDLIVARWPADFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N0S7</accession>
    <name>A0A392N0S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024369">
        <property type="protein sequence ID" value="MCH93193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N0S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019005">
        <property type="term" value="C:SCF ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031146">
        <property type="term" value="P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057207">
        <property type="entry name" value="FBXL15_LRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006553">
        <property type="entry name" value="Leu-rich_rpt_Cys-con_subtyp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318:SF106">
        <property type="entry name" value="F-BOX_LRR-REPEAT PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13318">
        <property type="entry name" value="PARTNER OF PAIRED, ISOFORM B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25372">
        <property type="entry name" value="DUF7885"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00367">
        <property type="entry name" value="LRR_CC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box/LRR-repeat protein 15-like leucin rich repeat" evidence="1">
        <location>
            <begin position="84"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="24848" checksum="57E5981718452108" modified="2018-12-05" version="1" fragment="single">KCRRLQHLDLQNADFLNDQHVVQLSSFLGDLVFINLSCCHKLTKSAFFTLAKNCPSLSEIKMEKIGGKIVGNSVSLAEFGVHPQLKSLYLGNNSWLSDEIITMFASIFPNLQLLDLNSCNRIFEGICHVLRRCCKIRHLNLADCSKVKLLGMNFVVPKLEVLDLSNTDVDDETLYVISKNCCGLLQLLLEQCNHVTEKGVKRARKLHTTKRPWISSSLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6L2</accession>
    <name>A0A392N6L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029834">
        <property type="protein sequence ID" value="MCH95440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9292" checksum="FA4834B1576FA0F8" modified="2018-12-05" version="1">MLVQNPNFRLHLSLAAAEKQNNNIYARTRAWRRPGHAWRSHQAANMHAIAPGATTPAPSAGSEENIVFLASSIRFQGKTQQSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NBQ1</accession>
    <name>A0A392NBQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Xylosyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032609">
        <property type="protein sequence ID" value="MCH96545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NBQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015020">
        <property type="term" value="F:glucuronosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044610">
        <property type="entry name" value="GLCAT14A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719:SF5">
        <property type="entry name" value="BETA-GLUCURONOSYLTRANSFERASE GLCAT14B-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45719">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="16345" checksum="4DE81FE717104785" modified="2018-12-05" version="1" fragment="single">DQRAKPVIIDPALYSVNKSDVFWVTEKRSVPTAYKLFTGSAWMMLSRQFVEYILWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLTAEHYQSMVESNAPFGRKFGRNEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLX1</accession>
    <name>A0A392NLX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Frigida-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043158">
        <property type="protein sequence ID" value="MCI00422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31791:SF37">
        <property type="entry name" value="A_TM021B04.7 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31791">
        <property type="entry name" value="FRIGIDA-LIKE PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="51"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="179"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="22"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="296" mass="35758" checksum="C8C0CE65F92C41D1" modified="2018-12-05" version="1">MPTTSKKKEKKQHQQQHNLASRAKEFESKEKEFEGRAIELELTEKRLKGRMKDVKSKEKQFEVRAKELESKEKLFESRMKEVELKEKEIEGQMQKLKSKRDEFEGQVKEFELEKKHFESKVKELKSKEMQFGGRVKVLESKEKEVVFEDEVKELGTKMEHFEGWVKELSTKHRFFESRVKELGSKLKQHEGRVKEFQSKEEELKGRVREFESKEKEFEGRVKEFESKEMEFKDRVREFEVKRMEMHLKELKSKENLLEAQVKDLESMQNEFDGELKEIELRENQYEALMKSFQRGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPJ9</accession>
    <name>A0A392NPJ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF7148 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045814">
        <property type="protein sequence ID" value="MCI01314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055572">
        <property type="entry name" value="DUF7148"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36352">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36352:SF1">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23650">
        <property type="entry name" value="DUF7148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7148" evidence="1">
        <location>
            <begin position="78"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13081" checksum="296262C10D5E3115" modified="2018-12-05" version="1" fragment="single">EGKDMTMVSGSSIRQQSVCSSVKLRGTRLNFHLPLPSQHSLIPIYHNNTHPSPVLRTRFHLTVVVPKASAGSYSPANDDGVSLGTMKLPINLDLQRFDSLLFQVKPFTPFFIAISYVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQB1</accession>
    <name>A0A392NQB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ras GTPase-activating protein-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046573">
        <property type="protein sequence ID" value="MCI01602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00780">
        <property type="entry name" value="NTF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002075">
        <property type="entry name" value="NTF2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018222">
        <property type="entry name" value="Nuclear_transport_factor_2_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039539">
        <property type="entry name" value="Ras_GTPase_bind_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10693:SF45">
        <property type="entry name" value="NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN WITH RNA BINDING (RRM-RBD-RNP MOTIFS) DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10693">
        <property type="entry name" value="RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02136">
        <property type="entry name" value="NTF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50177">
        <property type="entry name" value="NTF2_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="NTF2" evidence="3">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="82"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI01602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16188" checksum="E8221D8D50206572" modified="2018-12-05" version="1" fragment="single">EIDKKIQSLDYTSFRVEVLSADAQPSYNSGVMVVVTGCLTGTDNVKRKFAQSFFLAPQDKGFYVLNDVFRYVDAYKSVDIEPVPANDADESAPSEAFTPDPEPIHVAEDIPPSQPVIADTDTNISKEVSLPLENGKLSVTENVIPVNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6V9</accession>
    <name>A0A392P6V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065588">
        <property type="protein sequence ID" value="MCI07484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3189" checksum="3D2AF1AE3AF3490B" modified="2018-12-05" version="1" fragment="single">FDLARLVSFLSGFKFGSSGTTTVAVVVVGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9X3</accession>
    <name>A0A392P9X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">2-oxoglutarate dehydrogenase mitochondrial-like-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069543">
        <property type="protein sequence ID" value="MCI08584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045252">
        <property type="term" value="C:oxoglutarate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152:SF4">
        <property type="entry name" value="2-OXOADIPATE DEHYDROGENASE COMPLEX COMPONENT E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="2-OXOGLUTARATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Transketolase-like pyrimidine-binding" evidence="5">
        <location>
            <begin position="7"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI08584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8736" checksum="9DBB514D6266B740" modified="2018-12-05" version="1">MIETGEDIDWGFAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVVHDQTTWDKYCPLDHVTMNQNEEMFTVSNSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBK1</accession>
    <name>A0A392PBK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase SRPK1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071101">
        <property type="protein sequence ID" value="MCI09017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7042" checksum="90E22A76F383FF22" modified="2018-12-05" version="1" fragment="single">VTIKDPEKNMSSEILIPSASAAVGDQGTSDKNESSSKAPFFNGDSTLFTWWKSRMYSHIMGIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PD86</accession>
    <name>A0A392PD86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074919">
        <property type="protein sequence ID" value="MCI10068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PD86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="29420" checksum="9681A4F0DC58DCB0" modified="2018-12-05" version="1" fragment="single">NTPIIPSYCANLAQNSSSNCLGSQGFAGRFRNPSKPNLHDQKNFRYHPYEEGSDHKNNSLVFNDFDPLSRVDMNSFCNLENCVAPIATPPIRPSGNANLDSTHESIIPSYRANLAQNSSSSCLGSQGFANNFRNPSKPNLHNQKNFRYHPYGEGSNHKNNSLVLNDFDPLSRVDMNSFRNLKNYVPPIATPPPICPSGSANLDLTCERTTEHRNLKNNVAPIATPPPIHPSGNANLDLTLETTTEHCMFDLRNTDAWKRLTASPDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGI6</accession>
    <name>A0A392PGI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079222">
        <property type="protein sequence ID" value="MCI11198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="8">
        <location>
            <begin position="2"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI11198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="14613" checksum="039BDDEB8C871BC3" modified="2018-12-05" version="1" fragment="single">AFSSRGPNALNPEILKPDVTAPGLNILAAWSPAAGNMFNILSGTSMACPHVTGIATLVKAVHPSWSPSAIKSAIMTTATILDKRHRPISVDPEQTRANAFDYGSGFLNPLRVLNPGLIYDSEPTDFITFLCSLGYDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNK4</accession>
    <name>A0A392PNK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Actin-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the actin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089202">
        <property type="protein sequence ID" value="MCI13683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005856">
        <property type="term" value="C:cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.640.10:FF:000047">
        <property type="entry name" value="Actin, alpha skeletal muscle"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000404">
        <property type="entry name" value="Major actin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004000">
        <property type="entry name" value="Actin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11937">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00022">
        <property type="entry name" value="Actin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00268">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI13683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="22410" checksum="76C19E3638AAC36F" modified="2018-12-05" version="1" fragment="single">IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTXXXXXXXXXXXXXXXXXXXXEIVRDVKEKLAYIAIDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRB9</accession>
    <name>A0A392PRB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Small RNA degrading nuclease 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091390">
        <property type="protein sequence ID" value="MCI14197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3809" checksum="FEBD9465A76DAB97" modified="2018-12-05" version="1" fragment="single">MLYMPGLDAALYLSLSKALPDLKQSCGKPRPVLAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTJ3</accession>
    <name>A0A392PTJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative linoleate 9S-lipoxygenase 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096360">
        <property type="protein sequence ID" value="MCI15411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034440">
        <property type="term" value="P:lipid oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.245.10">
        <property type="entry name" value="Lipoxygenase-1, Domain 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000907">
        <property type="entry name" value="LipOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013819">
        <property type="entry name" value="LipOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036226">
        <property type="entry name" value="LipOase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11771">
        <property type="entry name" value="LIPOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00305">
        <property type="entry name" value="Lipoxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48484">
        <property type="entry name" value="Lipoxigenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51393">
        <property type="entry name" value="LIPOXYGENASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoxygenase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI15411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9131" checksum="6DA5BA7D59B61BA9" modified="2018-12-05" version="1" fragment="single">MHINALTRLILINSGGILEKILFPGETCMQITCDLYKDWKFTEQGLPSDLIKRGMAVEDTNENNPTGIQLLMLDYPYAIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PU64</accession>
    <name>A0A392PU64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ROOT HAIR defective 3 GTP-binding family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094002">
        <property type="protein sequence ID" value="MCI14846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PU64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016320">
        <property type="term" value="P:endoplasmic reticulum membrane fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008803">
        <property type="entry name" value="RHD3/Sey1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046758">
        <property type="entry name" value="Sey1/RHD3-like_3HB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45923">
        <property type="entry name" value="PROTEIN SEY1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45923:SF2">
        <property type="entry name" value="PROTEIN SEY1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20428">
        <property type="entry name" value="Sey1_3HB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sey1/RHD3-like three-helix bundle" evidence="1">
        <location>
            <begin position="3"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10091" checksum="853174FCA85740B1" modified="2018-12-05" version="1" fragment="single">DGDKDNIEKTLAVALLDTSGNPIRSITAADPLATSSWEKIPSSKTLITPVQCKSLWRQFKMETEYSVSQAISAQVQCFPFKRDFEGSFYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUK8</accession>
    <name>A0A392PUK8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">histidinol-phosphate transaminase</fullName>
            <ecNumber evidence="3">2.6.1.9</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-histidinol phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010097924">
        <property type="protein sequence ID" value="MCI15781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42885:SF2">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42885">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI15781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7455" checksum="B9450F4CF3B4631A" modified="2018-12-05" version="1" fragment="single">MEALGSIQFPYVYPDPESRRLREALAQDSGLESEYILVGCGADELIDLIMRSKEARLQLECGTHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZD9</accession>
    <name>A0A392PZD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103010">
        <property type="protein sequence ID" value="MCI16919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZD9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039278">
        <property type="entry name" value="Red1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21563:SF3">
        <property type="entry name" value="ZINC FINGER C3H1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13111" checksum="03FA56189D28732A" modified="2018-12-05" version="1" fragment="single">MEVVPYNFQLAFAVCKLLSKDYSSSDLNSTSLWFWACSTLVNAIMDAIPIPPEYVWLEAAAFLQNDMGIEAISQKFYKRALSVYPFSIMLWKCYYKLFLSIGDANNILEEAKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1G5</accession>
    <name>A0A392Q1G5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dentin sialophosphoprotein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105309">
        <property type="protein sequence ID" value="MCI17406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36308">
        <property type="entry name" value="DENTIN SIALOPHOSPHOPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36308:SF1">
        <property type="entry name" value="DENTIN SIALOPHOSPHOPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21065" checksum="6E26DC7E8F5F748C" modified="2018-12-05" version="1" fragment="single">MQDDQWQGSDTKIPDIGVTDEEDDSWNDFTGSGSAXDPSGIISSSNISSHTGNFEFSADLSDTKTAEGVNSSSNRDFGWMEGDQQQDNDNKTTDNFGSDEVSFSFDAWNVSNSEITGETGKFETTEDPNDTKIAEIAFASSSNFDWMQNDPWQGSNNKAIGIMTTNEVADSFDAWNDFTGSVISQNPSSSVSHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2Q2</accession>
    <name>A0A392Q2Q2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109827">
        <property type="protein sequence ID" value="MCI18368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14982" checksum="B50E3FE5B3EFE52D" modified="2018-12-05" version="1" fragment="single">ATKERLEREIKEVKELSKGKDEKWAKDKKTFTDEIVHLRGQVATHKDQLASSLKEKEDAASQRDALSGEKAVLEEMIEGLQVEVGARYYYGFQFALEQLKIVFPDLDESKLGEXDALNKIVDGKLVPFTSDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3D4</accession>
    <name>A0A392Q3D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese-like domain-containing protein 4 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111016">
        <property type="protein sequence ID" value="MCI18614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="entry name" value="Rhodanese-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044240">
        <property type="entry name" value="STR4-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47377">
        <property type="entry name" value="RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47377:SF1">
        <property type="entry name" value="RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12041" checksum="97F0FAE437FE6E09" modified="2018-12-05" version="1" fragment="single">SVVNVNNGEFANALTYEEALGLSPSASSGGDIDVNGFVDSVIGFATENPLILAGGVAILAVPLILSQILKKPKPWGVESAKNAYAKLGADGNAQLLDIRGLAEIRQVGGPNVGGLKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4K2</accession>
    <name>A0A392Q4K2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111987">
        <property type="protein sequence ID" value="MCI18827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34630:SF100">
        <property type="entry name" value="OS02G0118900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34630">
        <property type="entry name" value="OS11G0677101 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14180" checksum="9B793795848643BF" modified="2018-12-05" version="1" fragment="single">EALLPISLVELIIVNNEMKAFDVSGLRRLSSLKELKFMKCEELESLPENCLPSLLKSLQFWQCSRLESLPGNCLPSLKSLQFWFCEKLELLPEDNLPDSLEMLYIYGCPLLEERGAKCMVANCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q969</accession>
    <name>A0A392Q969_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Feruloyl CoA ortho-hydroxylase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119697">
        <property type="protein sequence ID" value="MCI20409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q969"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050295">
        <property type="entry name" value="Plant_2OG-oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47991">
        <property type="entry name" value="OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00682">
        <property type="entry name" value="IPNSYNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0847">Vitamin C</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="4">
        <location>
            <begin position="2"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI20409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16830" checksum="669D644280B303F2" modified="2018-12-05" version="1" fragment="single">MGAMILSFNYYPACPEPELVAGVCPHSDISSITVLLQDDIGGLYVRGKDDDSWINVPPVKGALVINIGDVLQIMSNGRYKSIEHRVVANRNKTRISMPIFVNPAPDIVIGPLPEILENGDEPQYKQVVFSDYFKYFFSKGHDGKKTIEFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBB4</accession>
    <name>A0A392QBB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flowering time control protein FCA-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010125832">
        <property type="protein sequence ID" value="MCI21611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11340" checksum="09423CCE2F74FCF9" modified="2018-12-05" version="1" fragment="single">PLPNFCDPNTGGSIMHNGPHHSRLPHQQVNAHMPNWEPGATVVQQQFLPQHAHSHLASMPLRPIQAPTLPSQPFNTEVQRQFHPADLPVRNIEQQLSSQVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCC1</accession>
    <name>A0A392QCC1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Non-specific lipid-transfer protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the plant LTP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124572">
        <property type="protein sequence ID" value="MCI21380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01960">
        <property type="entry name" value="nsLTP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.110.10">
        <property type="entry name" value="Plant lipid-transfer and hydrophobic proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036312">
        <property type="entry name" value="Bifun_inhib/LTP/seed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016140">
        <property type="entry name" value="Bifunc_inhib/LTP/seed_store"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000528">
        <property type="entry name" value="Plant_nsLTP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33076">
        <property type="entry name" value="NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00234">
        <property type="entry name" value="Tryp_alpha_amyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00382">
        <property type="entry name" value="LIPIDTRNSFER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00499">
        <property type="entry name" value="AAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47699">
        <property type="entry name" value="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017425535" description="Non-specific lipid-transfer protein" evidence="5">
        <location>
            <begin position="28"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Bifunctional inhibitor/plant lipid transfer protein/seed storage helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI21380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13477" checksum="4D77A6D9CC98415B" modified="2018-12-05" version="1">MGYSTMTIRFVCLAIVCLVTFGPKAEAAVSCGQVVNNLTPCVSYIIYGGNAVPVQCCNGVRSLNNMAQTTPDRRAVCNCIKNAVTSSGFTYTRFNLDIVAGLPSKCGVNIPYQISPNTNCNRYYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE43</accession>
    <name>A0A392QE43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010131431">
        <property type="protein sequence ID" value="MCI22611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12354" checksum="87594B8311144C42" modified="2018-12-05" version="1" fragment="single">MMSGVRGIWEEERIFRLPMQNSKFTSWRNAPSKSVQRAETRATLHFLRFQRCNAPASCAPCATTRDFPSLFSKSTAQCVSTCARVRGFSSSCKINGTTRHVPALLAQRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QF81</accession>
    <name>A0A392QF81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Eukaryotic translation initiation factor 6-2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130875">
        <property type="protein sequence ID" value="MCI22512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:cytosolic ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.75.10.10">
        <property type="entry name" value="L-arginine/glycine Amidinotransferase, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002769">
        <property type="entry name" value="eIF6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10784">
        <property type="entry name" value="TRANSLATION INITIATION FACTOR 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01912">
        <property type="entry name" value="eIF-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55909">
        <property type="entry name" value="Pentein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI22512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9029" checksum="A21E7C208969DC63" modified="2018-12-05" version="1" fragment="single">MPEDSXXXXXXXXXCALSNRGGLIHPNTSRKVLDELSAALEVPLEPGTVNRGSVCLNPGMTVNDWTAFCGSSTTRAELRVIDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHX7</accession>
    <name>A0A392QHX7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136398">
        <property type="protein sequence ID" value="MCI23497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="1">
        <location>
            <begin position="1"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="187" mass="20896" checksum="CD3FDFBD8F85419F" modified="2018-12-05" version="1" fragment="single">MVRGRALGFDRDAINEYLGNPYQLQGDDGLCPYGHVLAKGNWNVQAMTEKLLILGCTFRCNRVNQPLRAMRDEMKVKVQLVLLFILYNLLPRSHLSDAPMNIAGLLYMVTAGTDVDIARVISNEMKAIACSGVTDLARPKCPLAYPALIMGLIKKVRILIPPLVHEHLGVIDDRHVVRHCKAKQPEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QTI6</accession>
    <name>A0A392QTI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154005">
        <property type="protein sequence ID" value="MCI26555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QTI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3431" checksum="6033CFE961A52C11" modified="2018-12-05" version="1" fragment="single">EKKLIDLETNGDGVKVEDDSIVEEKVDLAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYM9</accession>
    <name>A0A392QYM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aspartic proteinase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172694">
        <property type="protein sequence ID" value="MCI29451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001461">
        <property type="entry name" value="Aspartic_peptidase_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033121">
        <property type="entry name" value="PEPTIDASE_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47966">
        <property type="entry name" value="BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47966:SF28">
        <property type="entry name" value="OS01G0290000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00026">
        <property type="entry name" value="Asp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51767">
        <property type="entry name" value="PEPTIDASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase A1" evidence="2">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI29451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6139" checksum="ABD0E647A241E08D" modified="2018-12-05" version="1" fragment="single">MPSIYWSIIKSQGGELVFGGVDPKHFKGKHTYVPVTEKGYWQIEMGDFFIGGSST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYQ3</accession>
    <name>A0A392QYQ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172532">
        <property type="protein sequence ID" value="MCI29438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYQ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4955" checksum="FDBACC4F4DE17968" modified="2018-12-05" version="1">MADHFWFPGEHWRDSASSSLPLARPRSATTQEQARSLMLAARLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZ27</accession>
    <name>A0A392QZ27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173709">
        <property type="protein sequence ID" value="MCI29601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZ27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3479" checksum="8356C05EE889F469" modified="2018-12-05" version="1" fragment="single">FCYGGSMSWNMVFSWLDGPSYLGYYPSLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2Y6</accession>
    <name>A0A392R2Y6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010179739">
        <property type="protein sequence ID" value="MCI30452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2Y6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="15405" checksum="2EB6BE6EF4AEB4B2" modified="2018-12-05" version="1">MGTLSILPELGEENRLKVLTQTRWQEKLRIKMKNMRWTRKQRRENKGTSQTEFTDTAQMKKRIRLKYQKRTVRRFLEHCELAAINRRRLEWCSYCIDGDYENCEGAVGEAQEEDDKRTYPTQYGGHASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4V3</accession>
    <name>A0A392R4V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188545">
        <property type="protein sequence ID" value="MCI31621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10437" checksum="0985DC81F7D8464C" modified="2018-12-05" version="1" fragment="single">FPEREFSGIAAFVGSIRKKTSPSALGTPGQVSISKVKVLIKLNASPVPLSQMDIGFVYKTRPTFAPTPSVTLVSDKTPAGVILALPWRVILGSPGLNFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6P2</accession>
    <name>A0A392R6P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010193947">
        <property type="protein sequence ID" value="MCI32261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1339" checksum="8E0B15B443F734C1" modified="2018-12-05" version="1" fragment="single">MLSCCGTARVAGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7Q9</accession>
    <name>A0A392R7Q9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable magnesium transporter</fullName>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+).</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Early endosome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NIPA (TC 2.A.7) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194190">
        <property type="protein sequence ID" value="MCI32289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7Q9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005769">
        <property type="term" value="C:early endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008521">
        <property type="entry name" value="Mg_trans_NIPA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12570:SF74">
        <property type="entry name" value="MAGNESIUM TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05653">
        <property type="entry name" value="Mg_trans_NIPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0967">Endosome</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="32"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI32289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8867" checksum="6F3C5D3340ED8555" modified="2018-12-05" version="1" fragment="single">MGMLGCLLCIVGSTEIVLHAPQEKALNSVLEIWLLAVQPAFLLYTASAIAVAFFLILYCAPRYGQTNIFIYIGICSIIGSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCC4</accession>
    <name>A0A392RCC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase related protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212363">
        <property type="protein sequence ID" value="MCI34288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13332" checksum="11AE875F0B3ABE80" modified="2018-12-05" version="1" fragment="single">MLVDREGLWFRVLAARYGVERGRLRGGGARGSSWWRELVRIPDGEGELGGGWFGEHISKRVGDGSDTFFWTDPWMDETSLCERFGRLYDLAENKSVSVVEMFSLGWGAGGEAWVWRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RDY1</accession>
    <name>A0A392RDY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcium-transporting ATPase plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010216949">
        <property type="protein sequence ID" value="MCI34771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RDY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF453">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9722" checksum="7DF3FD7EB0A28315" modified="2018-12-05" version="1" fragment="single">AIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RK67</accession>
    <name>A0A392RK67_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010236006">
        <property type="protein sequence ID" value="MCI36649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RK67"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7149" checksum="489AB1A738FE2994" modified="2018-12-05" version="1" fragment="single">VCSTRLVRGGGCVLSGMELCRVLILGLDLHICWLEFLSALWRWLDLIYTVVICSSPFPLQIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RS00</accession>
    <name>A0A392RS00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010254898">
        <property type="protein sequence ID" value="MCI38365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RS00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6478" checksum="A46BD2513EBE943C" modified="2018-12-05" version="1" fragment="single">APSSEKKPKTTPQPPAPNVSLVDLDSRYSKKENKEEKKLRKKKEGLSKRPKKFLAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSB5</accession>
    <name>A0A392RSB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010262395">
        <property type="protein sequence ID" value="MCI38994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10266" checksum="FC98FB661EAE8C83" modified="2018-12-05" version="1" fragment="single">ELAAHAPAWKRGRHRQEPPPVQGKHDAEAGGSRSRARSRLGQAHVQVPDAGDVDVASKYLNDDAEWSEEHEPRHEAPVEPPPAAPLQPPHVESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSW2</accession>
    <name>A0A392RSW2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010258550">
        <property type="protein sequence ID" value="MCI38685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF153">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="1">
        <location>
            <begin position="34"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="14305" checksum="8E9EC08BFF0BC05A" modified="2018-12-05" version="1" fragment="single">VTMADPNLEGLSLQGEEEEGFSFDFDEEGDEQLDFRWCLVGRFLCDRPVHFNSMKVRMANLWSPVMGVKIKEAKPGLFLFHFSHPLDMEGVIKGGPWTFDNNMLIMEQVQLGMQIEQIPLYYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTB4</accession>
    <name>A0A392RTB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010267462">
        <property type="protein sequence ID" value="MCI39452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF395">
        <property type="entry name" value="TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN, DYW DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI39452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6965" checksum="D4705F785918E9E7" modified="2018-12-05" version="1" fragment="single">MHKYCQNGHYDDALRLFEDMKSSNMKPDSFILCTVLSACGHAGNLSYGRTIHEFVKDNGLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWL4</accession>
    <name>A0A392RWL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010286693">
        <property type="protein sequence ID" value="MCI41018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10184" checksum="F9F718C1D3B1325C" modified="2018-12-05" version="1" fragment="single">PSLYALPTPALTDDETWVLTVGLVVDREQSGWVEDSMEVDSTEDGKGYETVLDVEFDFDPETYLPEGELNRLPESWNWVAGLELPFVFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RX68</accession>
    <name>A0A392RX68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010289576">
        <property type="protein sequence ID" value="MCI41231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RX68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="5860" checksum="A2DCC02F1EA11319" modified="2018-12-05" version="1" fragment="single">MGVRQSSISSVVMTSFVVSALAEDMISCITVLLLPGLFVLASFDSKSALEFCSLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYG3</accession>
    <name>A0A392RYG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010292315">
        <property type="protein sequence ID" value="MCI41439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5879" checksum="B976B43801A3D5EE" modified="2018-12-05" version="1" fragment="single">GGMARCTGHQASAQDVSGYCALRRFMWRVAHLHLIITRVAQEAWRGVQVRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1K3</accession>
    <name>A0A392S1K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010308106">
        <property type="protein sequence ID" value="MCI42728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7209" checksum="D1E31BF089F7FB28" modified="2018-12-05" version="1" fragment="single">AVAYEHDPLVLLLQEQLATQKAEQEQIKEDVKNLTEGQHHVLKTQEDIRSKLDAILAHISRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2T8</accession>
    <name>A0A392S2T8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Copia protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010308467">
        <property type="protein sequence ID" value="MCI42752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2T8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="82" mass="9409" checksum="6CF8659C1C746BB6" modified="2018-12-05" version="1" fragment="single">MELLDTPKGLILHQAKYATEIFRKFEMLDCNSSVTPADTRLKLEVDETSDTVDSTMFRQLISSLRYLCQTRPDISYAIGYVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3K3</accession>
    <name>A0A392S3K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MEI1 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010306435">
        <property type="protein sequence ID" value="MCI42590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="9119" checksum="AD425E7D8A8C892A" modified="2018-12-05" version="1" fragment="single">MLVDYAASRKLYEKRIQNEIDELKRRMKDLQIEYSKIGVDLKSKLGPLYKAMEAFSEIVKERYFVKYLNDPARKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4T9</accession>
    <name>A0A392S4T9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010323893">
        <property type="protein sequence ID" value="MCI43933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4T9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="2">
        <location>
            <begin position="2"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI43933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10885" checksum="DDBD751146C7D9F3" modified="2018-12-05" version="1" fragment="single">REQRRKLDPKSEEGIFLGYSISSRAYRVYNSRTKVIMESINVVIDDSPSPNVADVEADAEASHQQSEEVASEKESEPNLEVTDPEPEPAPVSKAPSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5V5</accession>
    <name>A0A392S5V5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Protein ELF4-LIKE 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EARLY FLOWERING 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010321827">
        <property type="protein sequence ID" value="MCI43777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5V5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009649">
        <property type="term" value="P:entrainment of circadian clock"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042753">
        <property type="term" value="P:positive regulation of circadian rhythm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048511">
        <property type="term" value="P:rhythmic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040462">
        <property type="entry name" value="EARLY_FLOWERING_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009741">
        <property type="entry name" value="EARLY_FLOWERING_4_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33469">
        <property type="entry name" value="PROTEIN ELF4-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33469:SF16">
        <property type="entry name" value="PROTEIN ELF4-LIKE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07011">
        <property type="entry name" value="Elf4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0090">Biological rhythms</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein EARLY FLOWERING 4" evidence="6">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="51"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI43777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8874" checksum="B7D00A72CA22D5F8" modified="2018-12-05" version="1" fragment="single">NRVLINEINQNHESKVPDNLSRNVGLIKELNNNIRRVAQLYSDLSTSFTKSIDVSSEGDSSGAVKSEEKSSHKRHRPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8F2</accession>
    <name>A0A392S8F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein SUPPRESSOR OF GENE SILENCING 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340278">
        <property type="protein sequence ID" value="MCI45161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031047">
        <property type="term" value="P:regulatory ncRNA-mediated gene silencing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2890">
        <property type="entry name" value="XS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005380">
        <property type="entry name" value="XS_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038588">
        <property type="entry name" value="XS_domain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46619:SF3">
        <property type="entry name" value="RNA RECOGNITION MOTIF XS DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46619">
        <property type="entry name" value="RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03468">
        <property type="entry name" value="XS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XS" evidence="2">
        <location>
            <begin position="28"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI45161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7372" checksum="C56A38B94174E7BE" modified="2018-12-05" version="1" fragment="single">MGWNHSKPPDNSKAYQYLSADEAEANQDDLIMWPPLVIIHNTNTGKSRDGKMEGLGNKWMDGKIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBP1</accession>
    <name>A0A392SBP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010342347">
        <property type="protein sequence ID" value="MCI45305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6393" checksum="F3E1A522D9DAE471" modified="2018-12-05" version="1" fragment="single">VFRVPSSSSVSVVPVVAIVVVTLAIRILVAVWSRGMGSVVDTTVVTICVYDGVGSCTVLSGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDA9</accession>
    <name>A0A392SDA9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010349828">
        <property type="protein sequence ID" value="MCI45865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDA9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF84">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9278" checksum="2977CB8FD04B376D" modified="2018-12-05" version="1" fragment="single">MSRLDRFLLTEEWCLTWPNCMQVSQLRGLSDHCPLVLEANEENWGPRPPRMLKCWKDIPGYNLFVRDKWNSLQVDGWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGD6</accession>
    <name>A0A392SGD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010366274">
        <property type="protein sequence ID" value="MCI47030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8090" checksum="2B8A52175E791C0F" modified="2018-12-05" version="1" fragment="single">NGSPSEEINIQRGLKQGDPLAPFLFVLVAEGLGGLMKQAVATNRFSGFRIGNGGVTISHLQYADDTLCIGDASIDNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SI61</accession>
    <name>A0A392SI61_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010388594">
        <property type="protein sequence ID" value="MCI48588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SI61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8192" checksum="5B35EB0584267C41" modified="2018-12-05" version="1" fragment="single">MKEELLQFEKNEVWELVPAPQDHSIIGTRWVFRNKLDENGKVTRNKARLVAQGYNQQESIDYDETFAPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJ15</accession>
    <name>A0A392SJ15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein argonaute PNH1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010379313">
        <property type="protein sequence ID" value="MCI47945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJ15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4502" checksum="B09FFE9B97DC3A86" modified="2018-12-05" version="1" fragment="single">MRLPVYDGGRNLYTAGSLPFTHKEFNIVVLNEDDEGASSST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SL19</accession>
    <name>A0A392SL19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010388087">
        <property type="protein sequence ID" value="MCI48556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SL19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="3821" checksum="55C7D3892FD760B0" modified="2018-12-05" version="1" fragment="single">VHACASVIWDLCAGTSTSGENGTSDSRSVIASHGKCRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMW1</accession>
    <name>A0A392SMW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010413262">
        <property type="protein sequence ID" value="MCI50223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10285" checksum="1E6ED766A0A04F62" modified="2018-12-05" version="1" fragment="single">MAPYQMSASELKELKKQLEELLEKKFIRPSVSPWGALVLLVKKKDGSMRLYVDYCQLNKATIKNKYPLPRINDLMDQLVGARVFSKIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPB0</accession>
    <name>A0A392SPB0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010420672">
        <property type="protein sequence ID" value="MCI50711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPB0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9488" checksum="A694AAA88F9EC1C5" modified="2018-12-05" version="1">MEWAVLKQSLKTKDADLLAIKTKMGTSYLEGFDFAAAQAKVVVPSEHHEYLKEIDVVKVIQDGRLVDQAAPAFVQGDPTGSDVALKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SY30</accession>
    <name>A0A392SY30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DEAD-box ATP-dependent RNA helicase 20-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010468276">
        <property type="protein sequence ID" value="MCI53748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SY30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017411832" evidence="2">
        <location>
            <begin position="20"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="19"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI53748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8215" checksum="5E8E8D6AC788BCD9" modified="2018-12-05" version="1" fragment="single">MMSLLLLLLFLLLSDSGLGGASAPASATAAAPSTRESGSGGSPRKVNLDGLPHFEKNFYNESPSVRAMTESEVNDYRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2M3</accession>
    <name>A0A392T2M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010482276">
        <property type="protein sequence ID" value="MCI54627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9323" checksum="1175B306CCDA5696" modified="2018-12-05" version="1" fragment="single">LFTSPCVAEELLLDMFGREDRIGFSKLSRKLPDLSNEAAMWDPRCPVYRGLSGLVEDTSNLVDAAIALISPHLLNKKYRTVSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6Z3</accession>
    <name>A0A392T6Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510044">
        <property type="protein sequence ID" value="MCI56294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6576" checksum="E5E207B6F9DFE4AC" modified="2018-12-05" version="1" fragment="single">ARDHQPGREDEARLEHFMKHKPPTFTRGYNPEGAVKWLEKVEIIFEAMRGWEPAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7D8</accession>
    <name>A0A392T7D8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010516374">
        <property type="protein sequence ID" value="MCI56702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7D8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5083" checksum="95018B7A5B3E0419" modified="2018-12-05" version="1" fragment="single">MKSSLHDCFLPLPPPPPLVGGEGEISRLLPLIEGMEGEFLCPLPLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8F4</accession>
    <name>A0A392T8F4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010526893">
        <property type="protein sequence ID" value="MCI57319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8F4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6675" checksum="86FE026A8D36A4B1" modified="2018-12-05" version="1" fragment="single">MKQVVKKEIIKWSDVGVIYPISDSVWVSPVQCVPKKGGIIVVANEKNKLIPTKAVTGWRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9K4</accession>
    <name>A0A392T9K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010533535">
        <property type="protein sequence ID" value="MCI57708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2382" checksum="F86BED9A1CC4E48F" modified="2018-12-05" version="1" fragment="single">MLSHGAPSHGPSIPDIIDGSKQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9X5</accession>
    <name>A0A392T9X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BAG family molecular chaperone regulator 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010532715">
        <property type="protein sequence ID" value="MCI57652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9X5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7166" checksum="7C6FF028A2742570" modified="2018-12-05" version="1" fragment="single">MVPIQFRNSPYPLVWIPPEYYGDKQPKIPTKAEVEGHEDKVAQDKKLTGAENVNATVQPEFEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBV6</accession>
    <name>A0A392TBV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010549154">
        <property type="protein sequence ID" value="MCI58611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5750" checksum="476B6C2BD899E875" modified="2018-12-05" version="1" fragment="single">MEDILFTRAKTLQERNINDERFDVDNYMAVKSVDNNGYYHSESYNDLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEF7</accession>
    <name>A0A392TEF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010564874">
        <property type="protein sequence ID" value="MCI59509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3651" checksum="0486362B9C39DCD5" modified="2018-12-05" version="1" fragment="single">MQQITEGYGWMDFNNMIDDCNISWVEEFYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR11</accession>
    <name>A0A392TR11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631110">
        <property type="protein sequence ID" value="MCI63104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2446" checksum="4F034CC81E3BD34A" modified="2018-12-05" version="1" fragment="single">MVVLKSKDSWRQAVLREDRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRL8</accession>
    <name>A0A392TRL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631030">
        <property type="protein sequence ID" value="MCI63097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3038" checksum="7FC1B13CC269E486" modified="2018-12-05" version="1" fragment="single">MFLENTISEQTSSPSWQARKGKAETNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW30</accession>
    <name>A0A392TW30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Deoxycytidine kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010647746">
        <property type="protein sequence ID" value="MCI64025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019136">
        <property type="term" value="F:deoxynucleoside kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050566">
        <property type="entry name" value="Deoxyribonucleoside_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10513:SF35">
        <property type="entry name" value="DEOXYADENOSINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10513">
        <property type="entry name" value="DEOXYNUCLEOSIDE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8069" checksum="843243CE3A2E7B25" modified="2018-12-05" version="1" fragment="single">MVEYLQSSVGIIHKNHAESITTFIKKSVDEELDDTSSGNQPLQKKRLTFCVEGNISVGKTTFLQRIANETIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWW2</accession>
    <name>A0A392TWW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein VERNALIZATION INSENSITIVE</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010659390">
        <property type="protein sequence ID" value="MCI64596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040029">
        <property type="term" value="P:epigenetic regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010048">
        <property type="term" value="P:vernalization response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044514">
        <property type="entry name" value="VIN3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46286:SF1">
        <property type="entry name" value="VIN3-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46286">
        <property type="entry name" value="VIN3-LIKE PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6538" checksum="DA97CDC0952E170A" modified="2018-12-05" version="1" fragment="single">MVQEAKAKLEKEVGPVNGVSSKMVRGIVSRLPIASDVQKLCSLAIEKADELLATDDNPESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZV6</accession>
    <name>A0A392TZV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679476">
        <property type="protein sequence ID" value="MCI65646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF486">
        <property type="entry name" value="RLK (RECEPTOR-LIKE KINASE) PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6929" checksum="8D8C65998EA2A5E8" modified="2018-12-05" version="1" fragment="single">MIGNLLYLTASKPDIAFAVGDCVRYQANPKASHLLQIKRIMKYVNETCDYGMLYTHGGGYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5K7</accession>
    <name>A0A392U5K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010742372">
        <property type="protein sequence ID" value="MCI68759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8232" checksum="18B24CB6D4AE83E1" modified="2018-12-05" version="1" fragment="single">MDKLKSKLSKEFETKNLGAVKKILGMEIRREWINRKLFLSQKGYLERVVERFGVKGAKSVVTPLAPHFRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5M9</accession>
    <name>A0A392U5M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010743820">
        <property type="protein sequence ID" value="MCI68833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5M9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6348" checksum="A6B73C061FBC98BF" modified="2018-12-05" version="1" fragment="single">MTVEELQSSLEAYEQRLNERSEKVNGEIALQSQINNPKKGKGNGMETKEEVDIIIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7L9</accession>
    <name>A0A392U7L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010742756">
        <property type="protein sequence ID" value="MCI68774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7L9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5283" checksum="0303016547575F11" modified="2018-12-05" version="1" fragment="single">GMCYLYICFPVGDPCFVCHICGLLPPLDDGAAPDVAGREDGEDFVEYAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U964</accession>
    <name>A0A392U964_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MATH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010746554">
        <property type="protein sequence ID" value="MCI68970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U964"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.210.10">
        <property type="entry name" value="Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008974">
        <property type="entry name" value="TRAF-like"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MATH" evidence="1">
        <location>
            <begin position="12"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5291" checksum="454DEACBDDFBB810" modified="2018-12-05" version="1" fragment="single">EVGDMKHEHSSVEKFTWKVENLLRFNQGIYSEPFILGSYPWYDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UES9</accession>
    <name>A0A392UES9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010809433">
        <property type="protein sequence ID" value="MCI72049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UES9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5155" checksum="113E7CFA0CE4BE17" modified="2018-12-05" version="1" fragment="single">IFSDLLHPRERGVAREIDAPLLNNALPLDDFIVVFLRGVKEAVIVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHE2</accession>
    <name>A0A392UHE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010829794">
        <property type="protein sequence ID" value="MCI73023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9363" checksum="47588A077D2CF027" modified="2018-12-05" version="1" fragment="single">QHQVPPHIPQQHQYSDFKLGMTATLYEQHYRMDWGLPRLSPPLMAATQDYIAQTLIPSHYQQYPQQTDLTGHFQRQTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJG0</accession>
    <name>A0A392UJG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010843942">
        <property type="protein sequence ID" value="MCI73681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2637" checksum="79283289FA7553BE" modified="2018-12-05" version="1" fragment="single">IMARRGNAQMAEALATLAGIVARDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKI0</accession>
    <name>A0A392UKI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010852588">
        <property type="protein sequence ID" value="MCI74061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3735" checksum="4446CE62A009D2E7" modified="2018-12-05" version="1" fragment="single">GVRRSPAAVFCSCCLLPAQCAGRAAHCAETIGKCHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL59</accession>
    <name>A0A392UL59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAC domain-containing protein 100-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010859313">
        <property type="protein sequence ID" value="MCI74373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5442" checksum="D0EB628B9A09B5AF" modified="2018-12-05" version="1" fragment="single">MEQFSSNQSQDTGLSNDTSSAVSKQDMGRNRTMYEDLEGPSSVAPLSDLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UNH7</accession>
    <name>A0A392UNH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010851012">
        <property type="protein sequence ID" value="MCI73996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UNH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6401" checksum="42021068EACC32FB" modified="2018-12-05" version="1" fragment="single">MEYREKFEMMVASLRKEDRGMLDSIFLNGLKEKLQDELRLYDHCDLADMMDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPG3</accession>
    <name>A0A392UPG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC1 family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010843452">
        <property type="protein sequence ID" value="MCI73655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7616" checksum="1D37B8107B6E9392" modified="2018-12-05" version="1" fragment="single">MDTASSHLIYRGIDPLLRSSYSHRHNNLPLRRHSKRISAVATDPKPAPVTTVNGSSSRSPPTKPVNGVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ12</accession>
    <name>A0A392UQ12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010889936">
        <property type="protein sequence ID" value="MCI75739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3504" checksum="45CF4C7136C10173" modified="2018-12-05" version="1" fragment="single">MALPTPNASVINPPPPGNQLVFLNVGSQIYIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTY8</accession>
    <name>A0A392UTY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010970274">
        <property type="protein sequence ID" value="MCI79277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8511" checksum="798A5737BC15551E" modified="2018-12-05" version="1" fragment="single">CHVIYAIMRGEPIEIGEMIARYIGHPFVITTLCQLEDVPTWEDTDEIAPAERPLDRTFFQRAVRDLQAAQAAAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYT3</accession>
    <name>A0A392UYT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011012626">
        <property type="protein sequence ID" value="MCI81176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5926" checksum="CFA11301146251BB" modified="2018-12-05" version="1" fragment="single">MGVEEKKIAIAVWMEERRSQLLVAKNPVAVCPLKSCEELRTFTNHLALPFNGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V087</accession>
    <name>A0A392V087_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011024826">
        <property type="protein sequence ID" value="MCI81676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V087"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2803" checksum="564ED99E8513D791" modified="2018-12-05" version="1" fragment="single">LPPLDDGAAPAAAVREDGEDFMEYPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2P3</accession>
    <name>A0A392V2P3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011046497">
        <property type="protein sequence ID" value="MCI82558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2P3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3829" checksum="5FCFE87B02FBC257" modified="2018-12-05" version="1" fragment="single">NSAGCLLPIARARHTLRGALEAVALAHFVLHFVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4Q7</accession>
    <name>A0A392V4Q7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011061856">
        <property type="protein sequence ID" value="MCI83214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4Q7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6275" checksum="F1E978253817FA52" modified="2018-12-05" version="1" fragment="single">GGDKGAPAVDAHLGATSLPPLAASSASPSFWDPLFNPVEFIERQLCMIGDTVASPPLPLMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8U5</accession>
    <name>A0A392V8U5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011053350">
        <property type="protein sequence ID" value="MCI82860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5677" checksum="DA09EE41F7F7B5A6" modified="2018-12-05" version="1" fragment="single">MLCGINAARSCRSRKSLVLVYDGAKSKQYTGASLIDDCVRNCSRKSLKPIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9K4</accession>
    <name>A0A392V9K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011104292">
        <property type="protein sequence ID" value="MCI84998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4099" checksum="21D9BC601DF07692" modified="2018-12-05" version="1" fragment="single">PAHSEADVPEALLQSLDFRGKTFRVCLLLLESVSQDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VDJ8</accession>
    <name>A0A392VDJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011105634">
        <property type="protein sequence ID" value="MCI85041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VDJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6384" checksum="DA5D7652D0BD571D" modified="2018-12-05" version="1" fragment="single">MCESYLNFEKLDCKEEFHKMKGAHTGFKKLMDLYLDNLNLAQKVENDKEAEDDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VK08</accession>
    <name>A0A392VK08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011200012">
        <property type="protein sequence ID" value="MCI88696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VK08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5798" checksum="B21519EEDC424E1A" modified="2018-12-05" version="1" fragment="single">ENIRNPKVPRFSDRKRQKATGIRYFLASARESDGTPLARWHARWASKPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VS15</accession>
    <name>A0A392VS15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011227768">
        <property type="protein sequence ID" value="MCI89781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VS15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017427071" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4072" checksum="C67824B91797BC46" modified="2018-12-05" version="1" fragment="single">GSCAARNAVVLVVLFFCHLRRAQGVAAPRAGSSCAARRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VT60</accession>
    <name>A0A392VT60_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retroviral polymerase SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011251253">
        <property type="protein sequence ID" value="MCI90683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VT60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="1">
        <location>
            <begin position="3"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3068" checksum="459C416BD4524428" modified="2018-12-05" version="1" fragment="single">TGAYRLYNPTSDKIVISRDVKVLENES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWB8</accession>
    <name>A0A392VWB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011282553">
        <property type="protein sequence ID" value="MCI91793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3699" checksum="92B7ADD6FD679E08" modified="2018-12-05" version="1" fragment="single">MFTHPPPHLILYISVVDPAGIPVERPVSVPCPYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1I8</accession>
    <name>A0A392W1I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011319071">
        <property type="protein sequence ID" value="MCI93081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="17"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7672" checksum="2098015B705F8831" modified="2018-12-05" version="1" fragment="single">EKEEKWAKDRKTFTDEIAHLRAQVATQKDQLASTLKEKEDAAFQRDALSEEKAALEELVEGLQVEVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA76</accession>
    <name>A0A392WA76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011439465">
        <property type="protein sequence ID" value="MCI97297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3019" checksum="F51773C22269DB94" modified="2018-12-05" version="1" fragment="single">MVEKAILGVIPPIVGGVIPPETYDLLQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WB79</accession>
    <name>A0A392WB79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011457058">
        <property type="protein sequence ID" value="MCI97874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WB79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6949" checksum="54F348E652CDC4D6" modified="2018-12-05" version="1" fragment="single">STCPVRENLFLPEDRRGPLQFERQLIGYFCTMLIGSVMRSTDIFAFFSRSACTPVGSDVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MUZ3</accession>
    <name>A0A392MUZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cyclin-SDS-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020257">
        <property type="protein sequence ID" value="MCH91360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MUZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039361">
        <property type="entry name" value="Cyclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004367">
        <property type="entry name" value="Cyclin_C-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10177">
        <property type="entry name" value="CYCLINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02984">
        <property type="entry name" value="Cyclin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclin C-terminal" evidence="3">
        <location>
            <begin position="36"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11946" checksum="2528A163CFF503B4" modified="2018-12-05" version="1" fragment="single">VGQKNFYIEKTAYSRCEVVAMEWMVQEVLEFECFHPTIYNFLCFYLKAANADAVVEKKVTCLALLALAGPGQLCYWPSTIAAAVVILACLELNQKASHKVIGVITVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXG1</accession>
    <name>A0A392MXG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020818">
        <property type="protein sequence ID" value="MCH91629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH91629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="14357" checksum="786D0CC154E96716" modified="2018-12-05" version="1" fragment="single">MGIWESNRWVWQLNWTAELTVMETAIAQELHVLLQHFRPRMDSTDRRRWIPGTAGLFSIKSAFTHLQNRFVLDDIYTSTMKALQKLWLNNVPSKSIFKWMGTNSIPFEGVQQHFSWFGELAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N163</accession>
    <name>A0A392N163_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025180">
        <property type="protein sequence ID" value="MCH93536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N163"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7757" checksum="194EB330B1C9D4A8" modified="2018-12-05" version="1">MEEEGRECFQEMDEQWYQEEVDVLLCGETERNRCLGVGNQVGQPLVVDKGLLPIVSGPCVNEPDFNQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6R3</accession>
    <name>A0A392N6R3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Legume lectin beta domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027899">
        <property type="protein sequence ID" value="MCH94678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6R3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd06899">
        <property type="entry name" value="lectin_legume_LecRK_Arcelin_ConA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016363">
        <property type="entry name" value="L-lectin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001220">
        <property type="entry name" value="Legume_lectin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050258">
        <property type="entry name" value="Leguminous_Lectin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401">
        <property type="entry name" value="CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32401:SF49">
        <property type="entry name" value="OS10G0129200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00139">
        <property type="entry name" value="Lectin_legB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002690">
        <property type="entry name" value="L-type_lectin_plant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2 5" id="KW-0430">Lectin</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Legume lectin" evidence="4">
        <location>
            <begin position="8"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="28415" checksum="C29008E0D72A847D" modified="2018-12-05" version="1" fragment="single">TKVNSENSVSFNYPKFTPSNSGLTLQGSAKVSDSGVLELTRRTGSDRNVGRVVYTNPIPIWDKKTDNLASFVSSFSFIMETIAGSSPAQGIIFFLTDPSGFQIPSHSFVGKLGVVDANRADNNFVGVEFDVYSNPWDPNYTHIGINPYGLYSSKLVKWNYVSGSLVNVKIIYDSHSTTLSVVAIDNRGQISTISLMVDLRCLLSETAVIGLSGSSGISRSSGNEQLHNIHSWSFTSTLDPTIRLMSSNIINNITVTDASYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR63</accession>
    <name>A0A392NR63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048900">
        <property type="protein sequence ID" value="MCI02368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NR63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9212" checksum="5516FFAC9CBCB223" modified="2018-12-05" version="1" fragment="single">MKLVNCKSIIEIVAKEGDEPNEGEMPFMELSILTLGTLPKLGSFYSGSFTLNFSSLKEMSFTQCNSTKVFRLGDKVPDELKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRF9</accession>
    <name>A0A392NRF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045110">
        <property type="protein sequence ID" value="MCI01065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="8">
        <location>
            <begin position="200"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI01065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="319" mass="36979" checksum="81BD48D0C14CA4DD" modified="2018-12-05" version="1" fragment="single">MGLGGVLMQRGKVVAYASRQLKKHERNYPTHDLELAAIVFTLKIWRHYLYGSRFEVFSDHQSLKYLFDQKELNMRQRRWLEFLKDYDFKLSYHPGKANVVADALSRKSLHMSSLMAKELDLIEEFRDLSLVCEVTPRSVRLGMLKLTNAFLEEVKECQKRDQKLMEKLVLIREGQEVDFGVDENGVVRYHGRVCVPDVPELRKMILEEGHRSGLSTHPGVAKMYQDLKKLFXWPGMKKQIXEFVYACLVCQKSKIEHQKPSGLLQPLFVPEWKWDSISMDFVGGLPRTARGNEVIWVIVDCLTKSAHFIAIKTGMLVPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUI6</accession>
    <name>A0A392NUI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052324">
        <property type="protein sequence ID" value="MCI03491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14577" checksum="7267A5DE22D6CB79" modified="2018-12-05" version="1" fragment="single">MSSKTSHFARGKLRTFFQTVSNNNPRLVTVALCIPVRLRMVVMYWYSDDPSSSAPVAAREPLVVPRVASVYFWREQLNNCDMFLASWTSSFTCALVVDDDGRRMNDSSCLFLIDDDCGGLLLIRGLKFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVL9</accession>
    <name>A0A392NVL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative serine/threonine-kinase GCN2-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051306">
        <property type="protein sequence ID" value="MCI03146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.110.10">
        <property type="entry name" value="Ubiquitin Conjugating Enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040213">
        <property type="entry name" value="GIR2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006575">
        <property type="entry name" value="RWD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016135">
        <property type="entry name" value="UBQ-conjugating_enzyme/RWD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12292">
        <property type="entry name" value="RWD DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05773">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54495">
        <property type="entry name" value="UBC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50908">
        <property type="entry name" value="RWD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RWD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9502" checksum="0BF04416A9E8B143" modified="2018-12-05" version="1" fragment="single">CLPGYPFKCPKLQITPEMGLSETDANKLLSLLLDQASLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESVSLLLLTYYFSVKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1Z6</accession>
    <name>A0A392P1Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Coatomer subunit gamma-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060453">
        <property type="protein sequence ID" value="MCI06018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030126">
        <property type="term" value="C:COPI vesicle coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005793">
        <property type="term" value="C:endoplasmic reticulum-Golgi intermediate compartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006888">
        <property type="term" value="P:endoplasmic reticulum to Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006891">
        <property type="term" value="P:intra-Golgi vesicle-mediated transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002553">
        <property type="entry name" value="Clathrin/coatomer_adapt-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017106">
        <property type="entry name" value="Coatomer_gsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10261">
        <property type="entry name" value="COATOMER SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10261:SF6">
        <property type="entry name" value="COATOMER SUBUNIT GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01602">
        <property type="entry name" value="Adaptin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Clathrin/coatomer adaptor adaptin-like N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="19133" checksum="322293E4D6EEC777" modified="2018-12-05" version="1">MYRANAIRVLCRITDGTLLAQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQVRRKFGYFVILDHSVNYGLLAGLELEWDLTDEYNRWEMEMKLQKTITKQLELPRVSHAVMLTEFMHTLYPTIKGLEEAQFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2Z9</accession>
    <name>A0A392P2Z9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057834">
        <property type="protein sequence ID" value="MCI05195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45613:SF195">
        <property type="entry name" value="OS01G0151900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45613">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="23"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="94"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="198"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI05195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="264" mass="30591" checksum="87F17DDD4D9FBAB3" modified="2018-12-05" version="1" fragment="single">VLGNTHEAKRLWKDIIAYKCKPDIFTYATFIKAMTKKGKLGTALKLFNGMWKDEXXXXXXXXXXXXXXXLCFKKRIPEALQVFHDMKERGCLPNVATYNSLIKHLCKIRRMDKVYELVDDMERRRGDCLPNDVTYSYLLNSLKAPEEVPGVLERMERNGCTMSDDVYNLVLRLYMKWDDLDGLRKTWDGMERNGLGPDRRSYTVMIHGHYENGRTKDAMRYFKEMTSKGMVPEPRTEKLVISMNGQLKETTGKQEGIEVEASNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P716</accession>
    <name>A0A392P716_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066889">
        <property type="protein sequence ID" value="MCI07848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000003">
        <property type="entry name" value="Transposon Ty3-G Gag-Pol polyprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="247" mass="28017" checksum="E5553BF62CC1E242" modified="2018-12-05" version="1" fragment="single">MSEEDIPKTSFRTHQGHYEYRVMPFGLCNAPSTFQAAMNGILQPFLRRFVAVFFYDILVYSSNLEDHVEHLDSVFSTLLTEQFYLKQSKCLLAQRQLEYLGHIISGQGVQADPSKVTAMVQWPTPTSVTALRGFLGLTGFYRKFIRNYASIASPHTQLLRKDSFLWSSEAQVAFEALKVAMTRAPILASPXVIFTDHQSLKQLITQVIQTPEQQIYLSKLLGFDFTIQYKSGKSNVVADALSRIDHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7L2</accession>
    <name>A0A392P7L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066582">
        <property type="protein sequence ID" value="MCI07764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="92"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="231" mass="25462" checksum="5322851110C15275" modified="2018-12-05" version="1" fragment="single">GPLIDKLDNMINKTRGGQGGVDSPNLSSNDSSPCEIEGSHLDVSHPPKVKQMKQRRPQINFPXLLGPKCLRLVGVINNSCMVQRRRXEKDSTSTSSESQIQSSDGGVTVPDVGETSKSVDVQRSVRVASEQLQNQQGLDLSVCLPFHNEPTTDSGVRFILGEDSLKDVDGFIAARDSPLVIELEAQRLLNVQQELGMNFDREEELPVNRMSNMEVRDIGELLKCQEPNGFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBJ6</accession>
    <name>A0A392PBJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069797">
        <property type="protein sequence ID" value="MCI08656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="109"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="23849" checksum="4E5D387F42CC0F0A" modified="2018-12-05" version="1">MATSDLRKLAFSHEVKGLVLNHLVSARQEKEVVNVNSKVECMEKTASEVKARHATEKGKLSAEIGXXRHATEKGKLSAEIGGLKKAREDDAVAAKKEYDVVVGEMDGLKKRYIEEKALLEKKIQLLNLTRNAFMVSCFQTGRDVWDLQGEIEDLEETNDGLKHSMADKYIEGFWSSIDQVKALFLDLDPGTLAQVDVLNKVEDGKLVSRIPRAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PH04</accession>
    <name>A0A392PH04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cathepsin 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075222">
        <property type="protein sequence ID" value="MCI10165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PH04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6723" checksum="32EC1774FCD87FA4" modified="2018-12-05" version="1" fragment="single">MVLSPQDIYQSLVKSREEDEVGKSLQNAFAWMKYGGCVSEESCPYRETWQPLDDPPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PH43</accession>
    <name>A0A392PH43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromatin modification-related protein EAF7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079970">
        <property type="protein sequence ID" value="MCI11388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PH43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="130"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="145" mass="16936" checksum="04DB357D5AB4E30A" modified="2018-12-05" version="1" fragment="single">MIDPSMRQLKRNKSSPEPMPRREPVAKPEVLTNGNHGPSHAAQQQNFGISSPESFDSDDDDDEYDNTDNLDRSGRRRRKPKRYSGNEFVEEVSDYEAEFDSDDDIVGEVVYDEEYLKKRKQRRKHSSSSEGDEEYQWDDDNVEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIG5</accession>
    <name>A0A392PIG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081833">
        <property type="protein sequence ID" value="MCI11871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12921" checksum="E2CD7E6B5F19C325" modified="2018-12-05" version="1" fragment="single">SISNLFKSLDASWSTFLTNIATVVILHVLHSIWMTRNGIRFNNTKVTAHAAKMKILTLIKHSAQLAARLSADAEVQVLQKLFLVHRPTPTITVKMVLWKSPIIGLDEGEYERLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIT7</accession>
    <name>A0A392PIT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Light-regulated protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081237">
        <property type="protein sequence ID" value="MCI11714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009856">
        <property type="entry name" value="Lir1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36762">
        <property type="entry name" value="LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36762:SF2">
        <property type="entry name" value="LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07207">
        <property type="entry name" value="Lir1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8576" checksum="15DDE8530C9BFA07" modified="2018-12-05" version="1" fragment="single">VFPAEACETVGGEACLADMYPEVKLQPEATKDTPKAASSENTEREYLEYNDPKTVFQAEACDDLGGTFCEPDYQKGVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK99</accession>
    <name>A0A392PK99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA-directed RNA polymerase II subunit RPB3-A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084385">
        <property type="protein sequence ID" value="MCI12498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="entry name" value="RNA polymerase, RBP11-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="RBP11-like subunits of RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="DNA-directed RNA polymerase RpoA/D/Rpb3-type" evidence="3">
        <location>
            <begin position="2"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI12498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6947" checksum="4694AF80ADDE6D06" modified="2018-12-05" version="1" fragment="single">LVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPG2</accession>
    <name>A0A392PPG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085604">
        <property type="protein sequence ID" value="MCI12795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017255177" evidence="1">
        <location>
            <begin position="30"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6779" checksum="2F9CE9ED97906A9E" modified="2018-12-05" version="1">MXSCLKMVLKLVVLLFAVMSTLLLGGAQGTEISKDEQRACLPYLPCYRPAPCCKPPSGKATQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPY4</accession>
    <name>A0A392PPY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091209">
        <property type="protein sequence ID" value="MCI14163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10764" checksum="2D608DD61DA526C7" modified="2018-12-05" version="1" fragment="single">TNIASSSTNPIISLSPPDFLLVDIQGIVHAPANVDVANCSFNTIDDETLDLMDFGNESDLGFVENLPCVEGDDELAENPKKVGDENKHHTLEIAKRNGVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR44</accession>
    <name>A0A392PR44_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091099">
        <property type="protein sequence ID" value="MCI14127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="1">
        <location>
            <begin position="2"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14097" checksum="BB8243B59218DC86" modified="2018-12-05" version="1" fragment="single">DDLTTPAQVVLLLILYNLKPRSHTSSATMDCVALLYYILANLQVDIARVIANEMKGIAESGIRSGAKPVLAYPDLIMRLCLEARMTIPAQIFEVISGPINDAYINRYCKGKRNRQRQQAPQEQQAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR54</accession>
    <name>A0A392PR54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091364">
        <property type="protein sequence ID" value="MCI14192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI14192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="22956" checksum="CF0F32E5A52817E7" modified="2018-12-05" version="1">MQDGAVVAYASWQLKTHEENYPTHDLEFAAIIFALKIWRHRLFGVQFDLYSDHKSLKYLFDQRELNMRQRRWMEYLKDFDFSLNYHPGKANVVVDALSRKALYASELLIYQCDLYEKFRDLNLNVMYRKGEVKLNIIELSCDLRSMISRAQAYDQDLRSRVGKPEFTVADDGVIQFKGITCVPNDEQLKRLILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3U6</accession>
    <name>A0A392Q3U6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109183">
        <property type="protein sequence ID" value="MCI18236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3U6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11149" checksum="EA4DF3651FEE1690" modified="2018-12-05" version="1" fragment="single">YLRWWKASSTEGKGTCKNVSTTTLKYELSELRVSRVLIRMRIYRQSSCMDMHEEWQFHNMSGVENSTLQERIVLAVVESFMHGGERYLQNSNAQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4N2</accession>
    <name>A0A392Q4N2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA recognition motif</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113101">
        <property type="protein sequence ID" value="MCI19068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4N2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14975" checksum="554D057A0452F37A" modified="2018-12-05" version="1" fragment="single">MKGKRFGFIRFSKVRDVRKMVKALNHVWFGSFKIWANEARFSPQLKVSKDAEVGQNLMRENGGLDDLLVKKGRRTNMEDGVKNGSFAEAVKGKELVGTTNNKWCPVANHKAAGEGEGGWRTYTSSVADLAWAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q991</accession>
    <name>A0A392Q991_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">F-box-like/WD repeat-containing protein TBL1XR1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119784">
        <property type="protein sequence ID" value="MCI20429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q991"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045183">
        <property type="entry name" value="Ebi-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22846:SF2">
        <property type="entry name" value="F-BOX-LIKE_WD REPEAT-CONTAINING PROTEIN EBI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22846">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI20429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4798" checksum="0D789B42CFAB76F6" modified="2018-12-05" version="1" fragment="single">PTLDVDWRSNTSFASSSTDNMIYVCKIGETRPVQTFAGHQVHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9P0</accession>
    <name>A0A392Q9P0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121979">
        <property type="protein sequence ID" value="MCI20854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9P0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000026">
        <property type="entry name" value="BTB/POZ domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.710.10">
        <property type="entry name" value="Potassium Channel Kv1.1, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000210">
        <property type="entry name" value="BTB/POZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011333">
        <property type="entry name" value="SKP1/BTB/POZ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24413">
        <property type="entry name" value="SPECKLE-TYPE POZ PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00651">
        <property type="entry name" value="BTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54695">
        <property type="entry name" value="POZ domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BTB" evidence="3">
        <location>
            <begin position="2"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI20854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13536" checksum="AD66CF386E53BDE7" modified="2018-12-05" version="1" fragment="single">RAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAIVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYTELVDSNPRLVVEIYEAYLSKQVNTAATLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QB68</accession>
    <name>A0A392QB68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Werner syndrome ATP-dependent helicase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124636">
        <property type="protein sequence ID" value="MCI21394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QB68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051132">
        <property type="entry name" value="3-5_Exonuclease_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620">
        <property type="entry name" value="3-5 EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13620:SF59">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI21394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19678" checksum="2855F5AFE028BB22" modified="2018-12-05" version="1" fragment="single">MAYIVLAEAPQQNLKRYGVYVGEASIPAAYAYHQGNSTKPLIIVTVTATASTVTQWLSTLLHRHRETLRAHHLVVGLGVQWTHPNNNNNNNNNPNPSTADTLQLCIGFWNDGDRWRLSRSDHCLELFRYPMDLRYKAVRICNEDLSLAKLDEIASKCLGFQVEQKREIGMSNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QB78</accession>
    <name>A0A392QB78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124680">
        <property type="protein sequence ID" value="MCI21404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QB78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008479">
        <property type="entry name" value="DUF760"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33598">
        <property type="entry name" value="OS02G0833400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33598:SF4">
        <property type="entry name" value="OS02G0833400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05542">
        <property type="entry name" value="DUF760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="7114" checksum="94E44F8EB38CB16E" modified="2018-12-05" version="1" fragment="single">VAENLAQLMYSVMMTGYMFRNAQYRLELQESLEQVALPDVQDKKVHHFSSLSFWDVVQKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QC60</accession>
    <name>A0A392QC60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CCHC-type integrase</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123362">
        <property type="protein sequence ID" value="MCI21116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QC60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="9"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI21116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11259" checksum="7A6973F3BC784DCD" modified="2018-12-05" version="1" fragment="single">TAPVLILPDAKESFVVYCDASKMGLGGVLMQKGQVVAYASRQLKIHEMNYPTHDLELAAVVFALKVWRHYLYESRFEVFSDHKSLKYFFDQKELNMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCA5</accession>
    <name>A0A392QCA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Kinetochore protein NDC80-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122282">
        <property type="protein sequence ID" value="MCI20905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055307">
        <property type="entry name" value="NDC80_plants"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46681">
        <property type="entry name" value="KINETOCHORE PROTEIN NDC80 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46681:SF1">
        <property type="entry name" value="KINETOCHORE PROTEIN NDC80 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="55"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="16313" checksum="DC2B481C6AA19F59" modified="2018-12-05" version="1" fragment="single">AELERLRTAPSQKELLEKEKGVLEGDVNKFHKIIEEFGSRIEPLERVLVEKEKQLEAKVVESEKICEENEELKRKVELQTFNIRDVERMKKELQAAERDAGEAELARNAWEEKCWEVDSTIAHKIKDLEALLIDCNQALK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDU8</accession>
    <name>A0A392QDU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128474">
        <property type="protein sequence ID" value="MCI22069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6293" checksum="E0EFA02859A2B664" modified="2018-12-05" version="1" fragment="single">RVFHITLKSQYVEDQFELDESPQLIDQVEPWLRNLHSVDSTEQAIFSSISRYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKY3</accession>
    <name>A0A392QKY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UPF0392 protein RCOM_0530710-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010145032">
        <property type="protein sequence ID" value="MCI25051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9083" checksum="96E063F9DD1564FD" modified="2018-12-05" version="1" fragment="single">MVESEEQNRSPVIRKKTSMMGSNSQNVISLISPRFKSAAAMAGWDEEALLLETLIVEDTPDRDSKQKRRFVLDSKSPLSNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMW3</accession>
    <name>A0A392QMW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149007">
        <property type="protein sequence ID" value="MCI25731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QMW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9141" checksum="BD8DB6BA8808AD8C" modified="2018-12-05" version="1">MDTASKIWKELKDQFYQGDVFRISDIQEEIYTLKQGVLQFDLILLLSAQGKKANILLNGDADFRHFVDCVEWNYLDIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSN1</accession>
    <name>A0A392QSN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153852">
        <property type="protein sequence ID" value="MCI26536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5762" checksum="77405C62041EA0E2" modified="2018-12-05" version="1">MLVVTDGYNCLPLYIRTRLWRQGIFSHRELPYQRPSTSMTTSSCTIRVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QTJ3</accession>
    <name>A0A392QTJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010157674">
        <property type="protein sequence ID" value="MCI27164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="166" mass="17579" checksum="F3BFFD2A36E546A6" modified="2018-12-05" version="1" fragment="single">MVTDAKPITIVPASGSTKKTTRSKSTVKKEKTVKVSESSPSVSIKSAVSKSKKKKPQSSTKRGLTMHDLYVSEDPFGTGNVVSDVDXSVKETTVSNVEPSVKISEQSEKSEVEKVIAETLGSQNPKSVETLETSKSVAKEVVDVTVPPSAAVNDQMDVSEKVSTGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6R5</accession>
    <name>A0A392R6R5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Subtilisin-like protease</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188087">
        <property type="protein sequence ID" value="MCI31556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6R5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI31556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9247" checksum="F30AB3E5CCFB2A57" modified="2018-12-05" version="1" fragment="single">MSKNIPTKWKGKCEIGQDFNTSMCNLKLIGARYFNKGVIASKPNVKISMNSPRDTQGHGSHTSSTVAGNYVNDASYFGYAKGVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6S1</accession>
    <name>A0A392R6S1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185558">
        <property type="protein sequence ID" value="MCI31225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6S1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9665" checksum="88CCDA4341E595C8" modified="2018-12-05" version="1">MWRNREIHDDNFHRPIDPMQQVLKITNDYYVSKSANNCVVERTRMLQNVGWKPPEEGRVKLNTDCACKDGRNAGCVCILRGSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAX5</accession>
    <name>A0A392RAX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010202095">
        <property type="protein sequence ID" value="MCI33174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2591" checksum="5F9D6E9287C74ADC" modified="2018-12-05" version="1" fragment="single">MALAAVPIEHGSPAECGGVDAVPANIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RBF3</accession>
    <name>A0A392RBF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Urease accessory protein UreG-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010208753">
        <property type="protein sequence ID" value="MCI33943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RBF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004400">
        <property type="entry name" value="UreG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31715">
        <property type="entry name" value="UREASE ACCESSORY PROTEIN G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31715:SF0">
        <property type="entry name" value="UREASE ACCESSORY PROTEIN G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0996">Nickel insertion</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW/HypB/UreG nucleotide-binding" evidence="7">
        <location>
            <begin position="37"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI33943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="12645" checksum="11B19A6EFCB35165" modified="2018-12-05" version="1" fragment="single">SHDGLAPHSHEPIYSPGFFSRRAQPLPNRDFNERAFTVGIGGPVGTGKTALMLALCQNLRDHYSLAAVTNDIFTKEDGEFLVKHKALPEERIRAVETGGCPHAAIREDISINLGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCJ3</accession>
    <name>A0A392RCJ3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212508">
        <property type="protein sequence ID" value="MCI34301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="88" mass="9426" checksum="015EFEA516B000BF" modified="2018-12-05" version="1">MGHFARDCRAPRAEPSTTVTQGGRPTTKGRVYYMGTEVSGQASNAIHEDCQIVGNTLTALIDIGATHSFISLDCAHRLKLLVCFAAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFT5</accession>
    <name>A0A392RFT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010215768">
        <property type="protein sequence ID" value="MCI34640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12774" checksum="726394FF0A9567B5" modified="2018-12-05" version="1" fragment="single">TWSKGVPPSEKKKKSLKRKEVSSSDSEYAVNEDVVATSGATVNGSSKKARTVPFVPVDNVSFHHENSASRWKFVYQRRVTIERNLSNDLLQCQDLVELIDAAGLMKTVKGLGKCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RG85</accession>
    <name>A0A392RG85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010225159">
        <property type="protein sequence ID" value="MCI35613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RG85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10890" checksum="9B8758731464AB22" modified="2018-12-05" version="1" fragment="single">MTRLVSRFPLYWTREHFDKPTEYYLTKEESMSSEELAGLEKLQAYVNGFVPARWVNRAGDPVLDAKGNEGWRNGLLIPRNCSAVRALPRSKFAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGM0</accession>
    <name>A0A392RGM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peroxisome biogenesis protein 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010218279">
        <property type="protein sequence ID" value="MCI34920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016558">
        <property type="term" value="P:protein import into peroxisome matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050168">
        <property type="entry name" value="AAA_ATPase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077">
        <property type="entry name" value="AAA-FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077:SF9">
        <property type="entry name" value="PEROXISOMAL ATPASE PEX6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5778" checksum="FE3DA69B230D56ED" modified="2018-12-05" version="1" fragment="single">MYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGP0</accession>
    <name>A0A392RGP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010216797">
        <property type="protein sequence ID" value="MCI34755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10073" checksum="D764001458FA7346" modified="2018-12-05" version="1" fragment="single">RAELVEKIRVLGQDVLDGVSFGFNNAVDQLKILNPTAELDTEELSMLKRVGNGQIIIPPEYAEMVEEEEEDEQENGEKGQEEEGHDESNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RHV1</accession>
    <name>A0A392RHV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010225270">
        <property type="protein sequence ID" value="MCI35624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RHV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7862" checksum="66C84A12E1B1B5C4" modified="2018-12-05" version="1">MQKNNPGMLRKRKVETSITGRMAHKSIEIGHPTEVRGRDIATSLITRPVDKAIAHTPKKGVTHQRDNTHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RL76</accession>
    <name>A0A392RL76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010240009">
        <property type="protein sequence ID" value="MCI37027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RL76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10196" checksum="EA62A01DDF4DE089" modified="2018-12-05" version="1" fragment="single">MVHDKLEGCLNEDWVKKEVMKPVDATSKTKGSKKPPKRSIKRKRFKCKLKMEEPKSDPKDMCSWLVAHKDAPLKKVNKRSWVESKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNT6</accession>
    <name>A0A392RNT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010242221">
        <property type="protein sequence ID" value="MCI37225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2500" checksum="30A8303897B0EF3C" modified="2018-12-05" version="1" fragment="single">MDVEEEIILDNALNEGSNNQDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTQ9</accession>
    <name>A0A392RTQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010261916">
        <property type="protein sequence ID" value="MCI38956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9369" checksum="59715B0BD770CEB9" modified="2018-12-05" version="1">MGRLDSPLRVTDRISPLLEGETVTSSSSCDELSRDSRKWIYPEEHVSEFEGARGGSSWMPDPSRIMGSLYRAGLLARHTEQMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVX3</accession>
    <name>A0A392RVX3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">IMP dehydrogenase/GMP reductase</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010283904">
        <property type="protein sequence ID" value="MCI40778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="106" mass="12407" checksum="B5553DC49554BC1F" modified="2018-12-05" version="1" fragment="single">WDTAPGYMRWYFRISHPYMMPLPQGDPPRPCEHEAIIEEEAQTEGPLATRLTTRINRMRQIARHLLDNGELPEGSRARRDVHDIWDAGNYAQQYRRRGGDRGFGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWC4</accession>
    <name>A0A392RWC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010275825">
        <property type="protein sequence ID" value="MCI40100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6806" checksum="2DB939A9156ABA3B" modified="2018-12-05" version="1">MGSGRHDNGNDDLKATVEELRRSNQELKDRMASIEQETQYVEEEKDEDVLESQPLAEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWL7</accession>
    <name>A0A392RWL7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010286840">
        <property type="protein sequence ID" value="MCI41031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF11">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7177" checksum="CCAF0F9240917D7B" modified="2018-12-05" version="1" fragment="single">WGLGAVCRDSDGELVAAATWEIPGCSDPDLAEACALYNAVILARDCCSRDVEFESDNSSIIALVKEGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWV8</accession>
    <name>A0A392RWV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010288098">
        <property type="protein sequence ID" value="MCI41121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11641" checksum="07EFFFC9FFE0392C" modified="2018-12-05" version="1" fragment="single">EVEPDQADHHHADVTEEGHSGDDGDDIVRDMDEEEMEREGDGGQAKVRRSAWVNHYEGKLEPEVFPGGPSDKTVWHDYGVPHIARCVYDEFVSENFIFILIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZB6</accession>
    <name>A0A392RZB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010298529">
        <property type="protein sequence ID" value="MCI41968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13081" checksum="A141D548F4AC5A9B" modified="2018-12-05" version="1" fragment="single">MMNTKQVNKSVKEHAELFAVFASLRLESGVKVEELPVVCEFPSVFPGDVSNLPPEREVEFSIDLVHETGPISMAPYRMSASELKELKKQLEELLEKKFIRLSVSPWGAPVLLVKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S529</accession>
    <name>A0A392S529_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010323780">
        <property type="protein sequence ID" value="MCI43928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S529"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="47"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI43928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11348" checksum="BB1C8D4A9AA6E92B" modified="2018-12-05" version="1" fragment="single">RGKPYDKRGKKPDEGGSSGGKGGGDRNFFKCGLPGHRFFECPKKDGKCLKCGDPGHKTDQCKKGVVCFNCKEEGHKSNVCNKSRVAWGKVFALDGGDAEADNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S7A2</accession>
    <name>A0A392S7A2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332490">
        <property type="protein sequence ID" value="MCI44569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S7A2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6869" checksum="536DBBA026709CD9" modified="2018-12-05" version="1">MVLEGQHQVRATYMGGNMVLIQSPCDGELAERHLDSNLWDSSPCLGGKQFQIGGRKVWGVPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8L6</accession>
    <name>A0A392S8L6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010338614">
        <property type="protein sequence ID" value="MCI45019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8L6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3471" checksum="71DF5705B5D2B673" modified="2018-12-05" version="1" fragment="single">MSGRPSSDLMGWSVRTTIVLARKYCRSLLDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAS7</accession>
    <name>A0A392SAS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone-lysine N-methyltransferase ATX5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010348312">
        <property type="protein sequence ID" value="MCI45769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7398" checksum="14EC18A47325BAB3" modified="2018-12-05" version="1" fragment="single">MIIKRNLKSQMPSLKRCKLADSVEEDNECSNIAPKKRKTSGYYYPLDLLGDVAAALIPASFHGLLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBB1</accession>
    <name>A0A392SBB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor E2FB-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010344735">
        <property type="protein sequence ID" value="MCI45474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7806" checksum="3BDDB932210B032C" modified="2018-12-05" version="1" fragment="single">CGFSLQTDADYWLLSDADVSITDMWRTEPGVEWNELDALQEDFCMAREHTTTPNHASNIGEASSASNPTVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBL6</accession>
    <name>A0A392SBL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010352213">
        <property type="protein sequence ID" value="MCI46059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5814" checksum="685CF96C5C66A118" modified="2018-12-05" version="1" fragment="single">MLQLTNLFLRKIKECQGTDKKLMEKLVLINEGKETDFGVDENGVIKYRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SCN7</accession>
    <name>A0A392SCN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010360169">
        <property type="protein sequence ID" value="MCI46628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SCN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5178" checksum="C207A644F92AFC64" modified="2018-12-05" version="1" fragment="single">HRLVDTITDPELDWVGPEPRVIASVITPTALGMYTIVEEDWEAVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFW7</accession>
    <name>A0A392SFW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010376926">
        <property type="protein sequence ID" value="MCI47778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2720" checksum="02F92A2734A0970F" modified="2018-12-05" version="1" fragment="single">MSSPDHGIRRLAYGTLDKFKNALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SN62</accession>
    <name>A0A392SN62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010407534">
        <property type="protein sequence ID" value="MCI49842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SN62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8676" checksum="F2D8B7C5C1DFCDEA" modified="2018-12-05" version="1" fragment="single">RITANTSRSFQTSFATCSLQRVVQRTPPGAFRHPSPPVRCSESCSEHLQELSEILRHTVAAATLSECLLENGGLRHYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRQ5</accession>
    <name>A0A392SRQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010420734">
        <property type="protein sequence ID" value="MCI50715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5604" checksum="C64D9C5FD4CE363A" modified="2018-12-05" version="1" fragment="single">MRLCFGGDKPTLEEYSDSDMARDIDSRKSTSGYMIKFARGVVAWQSRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS38</accession>
    <name>A0A392SS38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010435568">
        <property type="protein sequence ID" value="MCI51678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4231" checksum="82009413BFE82C6F" modified="2018-12-05" version="1" fragment="single">MASSSAPVVQNPLNPMDLPPIATIRKSLIYTGDVMQFNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZG7</accession>
    <name>A0A392SZG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010463558">
        <property type="protein sequence ID" value="MCI53465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2414" checksum="2756FCF610851066" modified="2018-12-05" version="1" fragment="single">MCKNRGGIFVEDNDDILEESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T436</accession>
    <name>A0A392T436_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010487664">
        <property type="protein sequence ID" value="MCI54926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T436"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="95" mass="10475" checksum="F26F08B2AF65F089" modified="2018-12-05" version="1" fragment="single">MKESHASLIAMMEKCLGKSVVVEDGSGSVVTKTAPVIQVSSEEVKETNSSSLREDAMTEFRHSAKRVELPSFDEDDPAGWISRAEVYFRVQGTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5D4</accession>
    <name>A0A392T5D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510524">
        <property type="protein sequence ID" value="MCI56321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3484" checksum="C3C773B7B9B3D1E7" modified="2018-12-05" version="1" fragment="single">AKAIDEGWATQLGILEATGQAVQDVRRLSSWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5I0</accession>
    <name>A0A392T5I0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Bromo-adjacent domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010511043">
        <property type="protein sequence ID" value="MCI56361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5I0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021916">
        <property type="entry name" value="DUF3527"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31390">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31390:SF30">
        <property type="entry name" value="TRANSCRIPTION FACTOR S-II, CENTRAL DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12043">
        <property type="entry name" value="DUF3527"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7143" checksum="172636CBDE6E2300" modified="2018-12-05" version="1" fragment="single">MVEEGHYAVDFHAQLSTLQAFSICVAILHGTSASSGGPGNEKNQQQLSKCSSLKMLLEDDVECLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCB6</accession>
    <name>A0A392TCB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010551030">
        <property type="protein sequence ID" value="MCI58749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6756" checksum="AF5D7FE767FB9F89" modified="2018-12-05" version="1" fragment="single">VMAQRSLADAMELMVNAMAQEAVSRTADSVALEARRGGEDELRLERFMNNKPPIFKGGYDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TE53</accession>
    <name>A0A392TE53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010542657">
        <property type="protein sequence ID" value="MCI58225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TE53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="11"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10617" checksum="E174DF748F6A8D97" modified="2018-12-05" version="1" fragment="single">ANQRLGAGGALITWARFKREFLTKYFPTDERNRKVVEFMELKQGNMSVSEYAAKFEELYHFAPHYNTVEAKEDKCVKFENGLRPDIKQLIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLU2</accession>
    <name>A0A392TLU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010590006">
        <property type="protein sequence ID" value="MCI60895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9192" checksum="393861FE0AD7E4BE" modified="2018-12-05" version="1" fragment="single">KFESGLRPDIKHLIGFSQIREFATLVDKSRICDDDGKAETSYYKALSDKRGNGQDRGKPYDNKGKKGFESSGGRKKNVGQCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNG9</accession>
    <name>A0A392TNG9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010619404">
        <property type="protein sequence ID" value="MCI62468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="13"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8620" checksum="41584B88DFBA36FA" modified="2018-12-05" version="1" fragment="single">MRCTEDDKTTLGSYMLREEANHWWKNARQRLGAGGMVITCEMFKREFWVKYFPADVRNKKVVEFLELKQGNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPT6</accession>
    <name>A0A392TPT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010607737">
        <property type="protein sequence ID" value="MCI61855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4330" checksum="146A15628EF3361D" modified="2018-12-05" version="1" fragment="single">MGLTTSRNSKERSFPDLGTHKTQTILQLSYCRSGHLHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQ46</accession>
    <name>A0A392TQ46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010634401">
        <property type="protein sequence ID" value="MCI63293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQ46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9672" checksum="59328C51F2AF277B" modified="2018-12-05" version="1" fragment="single">RRFQDGLRYELQDAVVPLGIRHFQVSVEKCQEIEDMINNQMNSQGNFSAGGPSRPSNLNQNCGRQGNKPYNRPQNNRGSNHSANQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRJ4</accession>
    <name>A0A392TRJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flagellar attachment zone protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010624506">
        <property type="protein sequence ID" value="MCI62746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0966">Cell projection</keyword>
    <keyword evidence="2" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="8"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10467" checksum="05484689F2C9F651" modified="2018-12-05" version="1" fragment="single">ESQLVGRVEEFESKKKKFEDQLKELVKEHESKQKQCDGRVVELVSKEKDYEGRLKELESREKDYEGRLKELESREKKLGEQMEEFES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXE8</accession>
    <name>A0A392TXE8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010678403">
        <property type="protein sequence ID" value="MCI65578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="15"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7975" checksum="8A072AB529BFD41B" modified="2018-12-05" version="1" fragment="single">MGCSEENKVTLGAYVLREEANHWWKNARQRLGAGGTVIAWEGFKREFLIKYFPADVRNRKVVEFMELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXN1</accession>
    <name>A0A392TXN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679505">
        <property type="protein sequence ID" value="MCI65648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2152" checksum="E08B6FD0761A3A8A" modified="2018-12-05" version="1" fragment="single">MGKVFTLSGEDAGQEDNLIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U320</accession>
    <name>A0A392U320_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010725499">
        <property type="protein sequence ID" value="MCI67863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U320"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5157" checksum="7A23E854918E1E56" modified="2018-12-05" version="1" fragment="single">MGSTIRPASSWVQRSDRRFMGSTIRPTGSWVKRSDCLIHGFSDQTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U552</accession>
    <name>A0A392U552_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010718699">
        <property type="protein sequence ID" value="MCI67526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U552"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4543" checksum="D53FE28CD7DD04EB" modified="2018-12-05" version="1" fragment="single">MTFHPNPRPQSRIPGPQKQLEAPIFHNRIPSKHDAQKQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7V4</accession>
    <name>A0A392U7V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010737702">
        <property type="protein sequence ID" value="MCI68510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6047" checksum="8851EA087F7B76D1" modified="2018-12-05" version="1" fragment="single">MVVVNTGITGQCRSAAAPISGAPPPTTSLRRVAAVLHRAGYRSYAVGHCCRCSLTFVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAK2</accession>
    <name>A0A392UAK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010763929">
        <property type="protein sequence ID" value="MCI69834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9172" checksum="CA810D5AEC503A26" modified="2018-12-05" version="1" fragment="single">SLYETAIVTEEDGSARLDEDGRPVMRRVARFPLSWSEEHFPTSTDSYLTKDEALSDGERAGLAKLQSYVEKFEPARYVTKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBQ0</accession>
    <name>A0A392UBQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010776600">
        <property type="protein sequence ID" value="MCI70468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8445" checksum="736B2ADD2CE50536" modified="2018-12-05" version="1" fragment="single">MELMANAMAQEAVSRTADRVAQEARRGGEDELRLERFMNNKPPIFKGGHDPEGDQTWLEGIERIFGAMRCQDEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHM3</accession>
    <name>A0A392UHM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010831311">
        <property type="protein sequence ID" value="MCI73099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8665" checksum="989B8DFE981741F9" modified="2018-12-05" version="1" fragment="single">AFILKAREKKNRPQATAVPDPLSQLVVDDPPSRGSKRKSQDETVRISIEIPKKGEDVAAEGDETNTLAPPTKKKRATRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI09</accession>
    <name>A0A392UI09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010831370">
        <property type="protein sequence ID" value="MCI73102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8827" checksum="E3E0DA6B3E57652B" modified="2018-12-05" version="1" fragment="single">MTEERKKLQEELGALQLSMTPVENEPEAARGLSTRVELVERIQVFGQDVLDGVKFGFDNAVDQLKVLNPRVELNTEGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIT2</accession>
    <name>A0A392UIT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010840816">
        <property type="protein sequence ID" value="MCI73539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6007" checksum="44BDB5DF1EF1A2B1" modified="2018-12-05" version="1" fragment="single">CNFNGGGRPPTPPPASGRQPPEPPPLFLRRFGSMKYNRMERSGIECGMKWSGMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V1C1</accession>
    <name>A0A392V1C1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011030757">
        <property type="protein sequence ID" value="MCI81917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V1C1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5799" checksum="687C9DE976D57DE5" modified="2018-12-05" version="1" fragment="single">MASSSAPVVNNPLNPLNLPPIASIGKSLIVAGDIMKYNFGLLKLRPEKMVDFES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4G3</accession>
    <name>A0A392V4G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011059341">
        <property type="protein sequence ID" value="MCI83114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8284" checksum="1A418744ACEC6CF1" modified="2018-12-05" version="1" fragment="single">DLVAWIVVARVVVGWIVVVRIVVAWVVVSRIVVVWIVVARIVVVWIVVARIVGVWIVVSRIVVVWIVVARIVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V506</accession>
    <name>A0A392V506_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011063304">
        <property type="protein sequence ID" value="MCI83277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V506"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6162" checksum="673BF91B59178272" modified="2018-12-05" version="1" fragment="single">QSMQADPSTLVLFHDHDHASGKPGQTVDDRCVHLHLHVSCPSFPVRVHGDDDGHPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6S7</accession>
    <name>A0A392V6S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011055709">
        <property type="protein sequence ID" value="MCI82969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2559" checksum="3E2A87690EBF3176" modified="2018-12-05" version="1" fragment="single">VVGATRIAVLFRAFWLLVPAQCAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAW3</accession>
    <name>A0A392VAW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavonol sulfotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093758">
        <property type="protein sequence ID" value="MCI84553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF55">
        <property type="entry name" value="RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="4"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6967" checksum="9F905947D33D5901" modified="2018-12-05" version="1" fragment="single">MENAIDVWNDLKERFSQGDLIRIAELQQEIYYLRQDPRSVTEFFSALKILWEELELY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VH47</accession>
    <name>A0A392VH47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011160761">
        <property type="protein sequence ID" value="MCI87227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VH47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="3815" checksum="0B027DC606443EEE" modified="2018-12-05" version="1" fragment="single">GQPIGQRRTTGGRNGGPPVSGTMVGGGAPAAGRCQPPSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJW7</accession>
    <name>A0A392VJW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011187117">
        <property type="protein sequence ID" value="MCI88207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7441" checksum="304CFFC45EDECD2B" modified="2018-12-05" version="1">MRRFGVSSVNCAPRRRGWRVAPAVRKCTRKARSSARCVASSGASRTFKVRHARRAEQVARRAGAKSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMH1</accession>
    <name>A0A392VMH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011198538">
        <property type="protein sequence ID" value="MCI88642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5112" checksum="35A06DE03590506A" modified="2018-12-05" version="1" fragment="single">MPFSSLPSVIPDSGRHRLVFPADLMTSSDSNGSSGSSDDCVVISSLAFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSC4</accession>
    <name>A0A392VSC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011268401">
        <property type="protein sequence ID" value="MCI91298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4441" checksum="189FBABE78D261A3" modified="2018-12-05" version="1" fragment="single">AGMREEFGNLRQDLAGVSSRIDRFEAFQRGDGHDNMNQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VT28</accession>
    <name>A0A392VT28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011249098">
        <property type="protein sequence ID" value="MCI90599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VT28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7623" checksum="36A1F1123AA4BD78" modified="2018-12-05" version="1" fragment="single">VLQQWLPSASKHHNDFYLLSLPALPFHNGYIFSTAEQLLPDSPRTLRNDHPILPPKCSPNKNFTSNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXD2</accession>
    <name>A0A392VXD2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011318197">
        <property type="protein sequence ID" value="MCI93048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1461" checksum="6F33087341C5A864" modified="2018-12-05" version="1" fragment="single">PQKVCLRGSVSSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4G8</accession>
    <name>A0A392W4G8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011362443">
        <property type="protein sequence ID" value="MCI94653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4G8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4094" checksum="CF90CC8DF8562184" modified="2018-12-05" version="1" fragment="single">PPPHAPLAQAPRPAPPDAVKILHVRIRYVEFYHLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6N8</accession>
    <name>A0A392W6N8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011367104">
        <property type="protein sequence ID" value="MCI94811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6N8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5760" checksum="F1D6B97D8D731E7D" modified="2018-12-05" version="1" fragment="single">MPRRPGRPKMGDRVATLEVTVEEIKGTLGVLLQQMQQLLQRSNSNNIPDGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC56</accession>
    <name>A0A392WC56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011439807">
        <property type="protein sequence ID" value="MCI97312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6152" checksum="81EE65F76E8FFA68" modified="2018-12-05" version="1" fragment="single">MAENVQNPPSPPQPRRTLGDYGQRNNGEIANLGFQTVNPVAFDIKNTVLSALKEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WJ66</accession>
    <name>A0A392WJ66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011452248">
        <property type="protein sequence ID" value="MCI97730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WJ66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5374" checksum="50A078D7471AF55C" modified="2018-12-05" version="1" fragment="single">MSSGVQKRTKVNKSQPCEQCPVQRAGGLVRRANGRSQNVPTKFACARRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXK5</accession>
    <name>A0A392MXK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA-binding protein with multiple splicing</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020391">
        <property type="protein sequence ID" value="MCH91418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10501">
        <property type="entry name" value="U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="125"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="17503" checksum="4FAC05ADCB969901" modified="2018-12-05" version="1" fragment="single">DTPSGLTSGNGMHNYIAQNNGHQMPNDTKTLGSAYDSYLRSAGLTSFNSGEAGVIGGVGLARGVGGIPGHSLGDPSVMGRPGGVGGPDLARNGRNVNFGGQLPINAVSRPGPETIPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8K7</accession>
    <name>A0A392N8K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031585">
        <property type="protein sequence ID" value="MCH96130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15140:SF6">
        <property type="entry name" value="TUBULIN-SPECIFIC CHAPERONE COFACTOR E-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15140">
        <property type="entry name" value="TUBULIN-SPECIFIC CHAPERONE E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="2">
        <location>
            <begin position="4"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23965" checksum="B0ABBBD5160DE735" modified="2018-12-05" version="1">MNFLESLNITAKAEEEILDLDFVSAPRYLRVINIKARLTRFPDWIPELEYLVKLMLGFSNFEHDPLDSLRKLPHLSRLNLWDDAFSGDSLHFKVGGFPKLKELDLTRLNKLSSISIDREALLALEHFRCHDNPQLKVLPKDLQNLENLKYLEFADMPAELVDSIDPNKDGPCHRIINHIPRVQVREKVESSFPKYELRPIPTQLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAN9</accession>
    <name>A0A392NAN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">REF/SRPP-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the REF/SRPP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031555">
        <property type="protein sequence ID" value="MCH96118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008802">
        <property type="entry name" value="REF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33732">
        <property type="entry name" value="REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33732:SF2">
        <property type="entry name" value="REF_SRPP-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05755">
        <property type="entry name" value="REF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="133"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="17696" checksum="57B57A95B84EB12E" modified="2018-12-05" version="1" fragment="single">VDEATKKFDEHAPPFAKQVANQAKGLIQEVTHKAEKAVNEAQSGGAKAAANYVATESKQIVLTGSVKLWSGLNQYPPFHAVAELAVPTVAHWSEKYNHVVKDISGKGYAVFGYLPLIPIDEIAKAFKQGEGKVSADHEKASKKDVSDEVGSSPAIALQPSKIYVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI83</accession>
    <name>A0A392NI83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040712">
        <property type="protein sequence ID" value="MCH99587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6922" checksum="73A18D05481EBE1E" modified="2018-12-05" version="1">MVLGFKIEKETICVGRRACLAIEEANRRSNGFVDVTAVLGKMFGSVDGEDLYLAAVVPEIANAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPG3</accession>
    <name>A0A392NPG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046999">
        <property type="protein sequence ID" value="MCI01757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10524" checksum="9CA106BA6618F376" modified="2018-12-05" version="1">MFLDMVNIVEWTFEFPLLQKEFIVSIHLXNFFKSLAPCIDKDKRSVEEEDDKVDSELDSDLSESSDADMFFRVKDLQKLHFSFRLFRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P040</accession>
    <name>A0A392P040_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058518">
        <property type="protein sequence ID" value="MCI05388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P040"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6096" checksum="4BC839B5B3967C0E" modified="2018-12-05" version="1" fragment="single">MVGSGPNVIHIVALNTGRVNPLWQAVKHILQCLLGTCHHGLLLQPSTALSKQSSRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1F6</accession>
    <name>A0A392P1F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNI-like superfamily protein isoform 2</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059072">
        <property type="protein sequence ID" value="MCI05572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="9912" checksum="0DD35AA2D269BE1F" modified="2018-12-05" version="1" fragment="single">LLNLCIGLIGRHLEDIVEDLNEIAICLPAEIKLAVAAIARRRKLLNDDILIALADTSWEILDVSGSDVSDFGMVKAAEVINTDLGFCLGLPX</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4E6</accession>
    <name>A0A392P4E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063458">
        <property type="protein sequence ID" value="MCI06898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6719" checksum="4E97B77918854220" modified="2018-12-05" version="1" fragment="single">RVVHGSFGSGRNNEMVNGRSTRAAELGSAVSTAVLNIKDQIDTPSKTEEHSLLVDQAINTHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P5V3</accession>
    <name>A0A392P5V3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PB1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062971">
        <property type="protein sequence ID" value="MCI06770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06410">
        <property type="entry name" value="PB1_UP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.90:FF:000058">
        <property type="entry name" value="Octicosapeptide/phox/Bem1p domain kinase superfamily protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.90">
        <property type="entry name" value="Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053198">
        <property type="entry name" value="Gynoecium_Dev_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000270">
        <property type="entry name" value="PB1_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31066">
        <property type="entry name" value="OS05G0427100 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31066:SF33">
        <property type="entry name" value="OS07G0556300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00564">
        <property type="entry name" value="PB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00666">
        <property type="entry name" value="PB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54277">
        <property type="entry name" value="CAD &amp; PB1 domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PB1" evidence="2">
        <location>
            <begin position="12"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="183"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="200"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="229"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI06770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="26619" checksum="948CFDBA67A6F1C4" modified="2018-12-05" version="1" fragment="single">MCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMTNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVSQNENPRAARLRLFLFPEGEDSRTNSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNXXXXXXXXXXXXXXKERNVLQQLDNVSNSDPGSPAPVVSSPFCSTSSASIPNLPPVKTKPENPVYEPDFKTSQIETETVLQPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG32</accession>
    <name>A0A392PG32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078679">
        <property type="protein sequence ID" value="MCI11053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="11581" checksum="A02927C0D9D64DA5" modified="2018-12-05" version="1" fragment="single">SLIGSGQPSRYYLLDPSSTLATTKGDQVVVDYLNDGSEGDTPLDDIVMVEVNVSAFADQTMTENQTLGVEVLGCAEIIKDTEGNDDISSVFTSILEPLDASPTTVCGGSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PH36</accession>
    <name>A0A392PH36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TraB domain-containing protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078824">
        <property type="protein sequence ID" value="MCI11092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PH36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046345">
        <property type="entry name" value="TraB_PrgY-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21530">
        <property type="entry name" value="PHEROMONE SHUTDOWN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21530:SF0">
        <property type="entry name" value="TRAB FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14175" checksum="786F5E63D6122155" modified="2018-12-05" version="1">MQKASSDDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGHMNGVIYALLADTGDLRFRDLAGKNSYDGGSGGWLDGLVKSLVRDTVIGIVLWALYELVKGASFPIFHDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHY8</accession>
    <name>A0A392PHY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">U-box domain-containing protein 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080085">
        <property type="protein sequence ID" value="MCI11414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.10.10:FF:000308">
        <property type="entry name" value="U-box domain-containing protein 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315:SF129">
        <property type="entry name" value="ARM REPEAT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23315">
        <property type="entry name" value="U BOX DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="repeat" description="ARM" evidence="3">
        <location>
            <begin position="165"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI11414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="27587" checksum="CBD026EB0CA6F73B" modified="2018-12-05" version="1" fragment="single">EDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEQELLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKSDGGGDGVVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAXXXXXXXXXXXXXXXXXKQNAACALLSLALVEENKSSIGASGAIPPLVSLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLS6</accession>
    <name>A0A392PLS6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086622">
        <property type="protein sequence ID" value="MCI13043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI13043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="247" mass="28279" checksum="D7EB7645980EE5D0" modified="2018-12-05" version="1" fragment="single">RICTSWGWGTIPMYQIAFEELGYRMPFTDLETAVFRHLRVCPSQLHPNSLGFLRAFEMTAAYLKIAPTLPLFFHTFGLQHSCPKGKKAKGKAPKGPRSESSKYGWVSLKQRKSLFKIFKESVRGFKEKFYGVRPITGNGWKTIVTRGPRKDEDGNVVRGPDGVPYEEDYANFHFQWNKGHYEISSNEFTYKRGELSTEEVEDYDRLVAFVESFPTNLLEDSEGNSLLDSEGRQRSSAKLVDTKRLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMD6</accession>
    <name>A0A392PMD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085652">
        <property type="protein sequence ID" value="MCI12807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="26"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="225" mass="26037" checksum="C11EFE5D35CC924A" modified="2018-12-05" version="1" fragment="single">DIIIQVQPIADALDRRKWKHATSGIFTVKSAYSAMQERRSVYPLDHHTTEALAHLWQNSVPSKVAIFGWRLLLGRLPTRESLYNKGIINTPLDTLCVLCSNEVEDIHHLFFLCNVSQQVWLKIFDWMGIDPMAFQDVSSHFLCFGQTCKGKNSKRYSHIIWLATTWCMWNNRNSIIFQDDSFDVTSLVDHIMYIAWFWFIGRVGENSGAIFSDWGTNPRACFQSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PN57</accession>
    <name>A0A392PN57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Regulator of nonsense transcripts UPF2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085961">
        <property type="protein sequence ID" value="MCI12880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PN57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035145">
        <property type="term" value="C:exon-exon junction complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000184">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039762">
        <property type="entry name" value="Nmd2/UPF2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12839">
        <property type="entry name" value="NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12839:SF7">
        <property type="entry name" value="REGULATOR OF NONSENSE TRANSCRIPTS 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5580" checksum="1413C4469B8C7C86" modified="2018-12-05" version="1" fragment="single">MQPPVMPEDGHTTRVTSGEEAVSSAAGKDSVVEPIWDDEDTRAFYECLPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNH2</accession>
    <name>A0A392PNH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087977">
        <property type="protein sequence ID" value="MCI13364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13220" checksum="196F9000CBC3068D" modified="2018-12-05" version="1" fragment="single">SLEERCSSRGGHRPFDHIPFNRFIDDNTLIDLPLCGRKYTWFKGDGLSMSRLDRFLLSGEWCLAWPNCTHVARMRGLSDHYPLILSANEEDWGPHPXXXGIPFRSLAGAVLCLKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNP2</accession>
    <name>A0A392PNP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PTI1-like tyrosine-protein kinase 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088236">
        <property type="protein sequence ID" value="MCI13434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052101">
        <property type="entry name" value="Plant_StressResp_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47983:SF44">
        <property type="entry name" value="PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47983">
        <property type="entry name" value="PTO-INTERACTING PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI13434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7916" checksum="2F094514B0E1D9FE" modified="2018-12-05" version="1" fragment="single">APDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWVSLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQP5</accession>
    <name>A0A392PQP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091210">
        <property type="protein sequence ID" value="MCI14164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6730" checksum="E634EF166C694DF8" modified="2018-12-05" version="1" fragment="single">MINYEHENDTISAEEALDTTSISETGFKQEKDIDDITSISETDFQPDKDTSELKYLLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWQ9</accession>
    <name>A0A392PWQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101271">
        <property type="protein sequence ID" value="MCI16528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11608" checksum="E006033984E6B0DE" modified="2018-12-05" version="1" fragment="single">MLSPWEGLVSPNWSLMVRISVELEPRSVEKPTMKSWVLRNQGMIMIHSFPFSRSNSKLNLYSHCVGVACLNKSSWMTGLMAENTRIRTGVAVVRNELVFQPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0Y9</accession>
    <name>A0A392Q0Y9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105962">
        <property type="protein sequence ID" value="MCI17562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0Y9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF498">
        <property type="entry name" value="DNAK FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11979" checksum="D8C5A04F128FF2EF" modified="2018-12-05" version="1" fragment="single">DLHIECSKLPVLFCDNQSALHIASNPVFHERTKHIEIDCHLVREKEQEGLLRLLPVSTQEQLTDFFTKAMPTPKFHNLLSKLGLLDVYQASACGRMLSISDAYGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q281</accession>
    <name>A0A392Q281_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">P-loop containing nucleoside triphosphate hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105094">
        <property type="protein sequence ID" value="MCI17355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q281"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044802">
        <property type="entry name" value="NADKc-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010488">
        <property type="entry name" value="Zeta_toxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153">
        <property type="entry name" value="CALMODULIN CALCIUM-DEPENDENT NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31153:SF19">
        <property type="entry name" value="P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06414">
        <property type="entry name" value="Zeta_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zeta toxin" evidence="3">
        <location>
            <begin position="11"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI17355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11416" checksum="3F09F2E2E7AD7A6D" modified="2018-12-05" version="1" fragment="single">SQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGASANAVVIEADAFKESDVIYKALCSRGHHDMIKTAELVRSLRHFSARTLHSIQFYHEYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5Y1</accession>
    <name>A0A392Q5Y1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113356">
        <property type="protein sequence ID" value="MCI19130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5Y1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="49"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11321" checksum="7C2760BEC3C4249F" modified="2018-12-05" version="1">MSAKLAAGFFEVSENVMLQALNVSPPPRAPVVEIMVLWKTPTISWLKVNTDGFVNLHSAASGGIFRDYMANFRGVYAQTIGNQTVLHAELMAIILAMEIANKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7G9</accession>
    <name>A0A392Q7G9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118000">
        <property type="protein sequence ID" value="MCI20074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7G9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="12"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="17191" checksum="7960183305EED1B8" modified="2018-12-05" version="1" fragment="single">FNSLLMEEEGLTWEQLKDALLERYGGHGEGDVYEQLTELRQTDTVDDYIVEFEYLTAQIPKLPDKQFLGYFLHGLKKEIRGRVRSLAVMGELSRGKLLQVTRAVEREVKGEDGSGYNRQARLGHGSSSKNGLHGSSRRDGSDWVFVKGSKGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9K7</accession>
    <name>A0A392Q9K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyl-CpG-binding domain-containing protein 9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117309">
        <property type="protein sequence ID" value="MCI19935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47162:SF8">
        <property type="entry name" value="METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47162">
        <property type="entry name" value="OS02G0192300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21639" checksum="082719AB4BA645BF" modified="2018-12-05" version="1" fragment="single">MDLDGDESIQMLLLEPCAPTENDILSCVASFSNEAYASEGLRPVAGSVQDITGNSFADNMNFSDEIGEILVEEQSPSSAWRVISQKLINSCKDICKKKGSLKFYCKHVESEMGLWDLRNGKSDTHFTSLDKFCGSPVSVSIPDTIYADNDLNGLYELLEKWLEQDRFGLDAEFVQELLEMNLGVQDSLQYELLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR56</accession>
    <name>A0A392QR56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153338">
        <property type="protein sequence ID" value="MCI26449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QR56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5357" checksum="60FC033CB6FBF276" modified="2018-12-05" version="1">MDNSIDLKTTTTMAVSDNHNTTTVIQTKTKEEGEVSSSTDGDVFFFSKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR77</accession>
    <name>A0A392QR77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149378">
        <property type="protein sequence ID" value="MCI25785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QR77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11074" checksum="A5ACC861E0ABA036" modified="2018-12-05" version="1" fragment="single">FETFKSKGSGETSNFKRFVQSKDMKEWVAPVSISAVKVLPATDNPHVYHYWPDRSLQCPYSRHFLWLWVELHVPHSTTVPPFEHGNLGQSDPASYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYN2</accession>
    <name>A0A392QYN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative mitochondrial-processing peptidase subunit beta-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167058">
        <property type="protein sequence ID" value="MCI28646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.830.10">
        <property type="entry name" value="Metalloenzyme, LuxS/M16 peptidase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050361">
        <property type="entry name" value="MPP/UQCRC_Complex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11851:SF149">
        <property type="entry name" value="GH01077P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11851">
        <property type="entry name" value="METALLOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="LuxS/MPP-like metallohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase M16 N-terminal" evidence="7">
        <location>
            <begin position="108"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="18"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="19"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="38"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI28646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="140" mass="15274" checksum="5A3C0B9F4817D5D5" modified="2018-12-05" version="1" fragment="single">MTINKLLTLVRRSTRRTPILSTIRSPSFSTSAAAPVTRSPPSPPPSPPPPNVMIYDRLAESVKAKLQRLENPDPRFLKYGSPKPEIRDHTQILSAPETRVTTLPNGLRVATESSLGGRTATVGVWIDAGSRFETEETNGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZ99</accession>
    <name>A0A392QZ99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative xyloglucan glycosyltransferase 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Golgi apparatus membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166749">
        <property type="protein sequence ID" value="MCI28595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZ99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32044">
        <property type="entry name" value="GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32044:SF80">
        <property type="entry name" value="XYLOGLUCAN GLYCOSYLTRANSFERASE 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="9">
        <location>
            <begin position="14"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI28595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13925" checksum="D59863173F0836BE" modified="2018-12-05" version="1" fragment="single">CQLDWPKDRLLVQVLDDSDDESIQWLIKAEVAKWSLKGVNIIYRHRKFRTGYKAGNLKSAMNCDYVKDYEFVAIFDADFQPCPDFLKQTIPHFKGNPDLALVQARWTFVNTDENLLTRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZX8</accession>
    <name>A0A392QZX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tropinone reductase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173329">
        <property type="protein sequence ID" value="MCI29549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045000">
        <property type="entry name" value="TR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42898:SF6">
        <property type="entry name" value="NADP-DEPENDENT MANNITOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42898">
        <property type="entry name" value="TROPINONE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI29549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4311" checksum="CE3723651CC9176F" modified="2018-12-05" version="1" fragment="single">MANTDSSNRSSRWSLKGFTALVTGGTRGIGHAVVEELAEFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2N6</accession>
    <name>A0A392R2N6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-directed RNA polymerase III subunit RPC4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010180231">
        <property type="protein sequence ID" value="MCI30517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2N6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7679" checksum="BAD379F289ADBC1B" modified="2018-12-05" version="1" fragment="single">YLNEEEFGEAAESRAYDESKANSAIELGLLEENPEASAFFMKLPPVIPMLKKVQDVKENVKRPGGPRGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R473</accession>
    <name>A0A392R473_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010184221">
        <property type="protein sequence ID" value="MCI31037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R473"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10748" checksum="4C0F70A00DC731A1" modified="2018-12-05" version="1">MFSRFQTLVAGLRVLNKGYTIADHVKKIIRSLPTKWRPMVTALKVSRDLNNTTLEELISSLRSHEIELEADEHQKKVKSVALKSSNDFEKVQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6K0</accession>
    <name>A0A392R6K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein FAM38B</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186899">
        <property type="protein sequence ID" value="MCI31410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005261">
        <property type="term" value="F:monoatomic cation channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071260">
        <property type="term" value="P:cellular response to mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050982">
        <property type="term" value="P:detection of mechanical stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042391">
        <property type="term" value="P:regulation of membrane potential"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027272">
        <property type="entry name" value="Piezo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031334">
        <property type="entry name" value="Piezo_cap_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167:SF47">
        <property type="entry name" value="DUF3595 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13167">
        <property type="entry name" value="PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12166">
        <property type="entry name" value="Piezo_cap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Piezo non-specific cation channel cap" evidence="1">
        <location>
            <begin position="27"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="15978" checksum="64219F4103237CB5" modified="2018-12-05" version="1" fragment="single">GNPTNIANPIKDASARVDISTSSGKLTLFETTLCEKISWEKLEARKSLDPQGYLSAYDESDIQLICCQSDASTLWLVPPVVQARFMKSLRWNMDITFSWEFTRDRPKGKEVVKYELKIQEQDLPTSYEVTNVFNGTSNGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6M2</accession>
    <name>A0A392R6M2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185183">
        <property type="protein sequence ID" value="MCI31175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6M2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5922" checksum="AFA3C6D221F9F4B6" modified="2018-12-05" version="1" fragment="single">QVSFGAQYDAGFLFALEQVKIFFPDLDEQLLGEADAMKKIEYGKLIDDVPPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6V3</accession>
    <name>A0A392R6V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194561">
        <property type="protein sequence ID" value="MCI32321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15529" checksum="06167E9BF13CD12F" modified="2018-12-05" version="1" fragment="single">MRQRRWMEYLKDFDFDLKYHPGKANVVTDALSRKTLHVSELMMYKCNLIENFRNLNLNIVDAEDGLVMNKLEISCDLRDKIVQAQMDDPDLQRRINNPEFFIATDGAIHYSGRLCVQNDVELKRLILSEAHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R740</accession>
    <name>A0A392R740_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ethylene-responsive transcription factor RAP2-4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010189059">
        <property type="protein sequence ID" value="MCI31676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R740"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5817" checksum="708773B6DB068C11" modified="2018-12-05" version="1" fragment="single">EGSGSLSSPEGSDDSSPLSDLTFGDFAEPQWDNGSEQFNLQKFPSYEIDWDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RBK3</accession>
    <name>A0A392RBK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204152">
        <property type="protein sequence ID" value="MCI33404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RBK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3781" checksum="E5BFD4034C02509E" modified="2018-12-05" version="1" fragment="single">MRKAMKRCGRAKPSEELVGVEARCLRIRHRIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RDR9</accession>
    <name>A0A392RDR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212186">
        <property type="protein sequence ID" value="MCI34272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RDR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11600" checksum="376CC398BDCFF11C" modified="2018-12-05" version="1" fragment="single">ISLSSQTTSKQSTPTRKRSIRYKEPANLNRFGNHQRLEKNPANLNRFGNRQRIKYQKKTNHTRYQPHTDGAGSNTTTSASQHLTPTTPFHHLHPPPPPQHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RDV0</accession>
    <name>A0A392RDV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Calcium-transporting ATPase plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010213562">
        <property type="protein sequence ID" value="MCI34429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RDV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF455">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE 12, PLASMA MEMBRANE-TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="26"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI34429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13567" checksum="83CA3E85A7266E09" modified="2018-12-05" version="1" fragment="single">GNSQEDKGHKKFRGSKTDINDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADNAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGIENFTEIFSNAMAPKVLELFHQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKS0</accession>
    <name>A0A392RKS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010238278">
        <property type="protein sequence ID" value="MCI36867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12158" checksum="DED62600897EBF48" modified="2018-12-05" version="1" fragment="single">MTNGSNHGGSSQQVVADEVRRLQAKMASFEREQARQNADSDDENPTESQPLAQTLWDAKVPEGFKSPHLPTFDGKTDPLEHLMAVGTQTAIIGAPEHLKCKLLSGTFKEAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPT9</accession>
    <name>A0A392RPT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010257938">
        <property type="protein sequence ID" value="MCI38641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5409" checksum="1B13192211FD65D3" modified="2018-12-05" version="1" fragment="single">MGLSRENFELWKVKMEAILMFGLMDKTWSVVIGCLRDKELSEMTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQL5</accession>
    <name>A0A392RQL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010255165">
        <property type="protein sequence ID" value="MCI38384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11145" checksum="0E16F2166AD3D9A2" modified="2018-12-05" version="1" fragment="single">MANFEVRRVLVDPGSSVDVMYAHTFETIQLNERNLAPYVGSDLQGFNGTTTKPWGYVDLIVPVGANETAKSIKVKFLVVDCHLYINASSAGQPLQICSLCLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQY2</accession>
    <name>A0A392RQY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010252924">
        <property type="protein sequence ID" value="MCI38190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="11844" checksum="DA8D6F45B976A99A" modified="2018-12-05" version="1" fragment="single">ASVKEGDGFPGVVQVGDIVVSLGASQTKGARTSGPRQEGGSNPKVSEVPVAAVKEKDRQVLLRNYRATQDDMLWAQNGIVATVINGDAVPVVQNRITDASFNEVVLVPMGADK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RR24</accession>
    <name>A0A392RR24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Centromere protein O</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010258052">
        <property type="protein sequence ID" value="MCI38652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RR24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3936" checksum="A7EDFDBA536EF3D8" modified="2018-12-05" version="1" fragment="single">VHMEADRKAMSGDADISAGPQERITYKTGNKIFQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSG5</accession>
    <name>A0A392RSG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010265689">
        <property type="protein sequence ID" value="MCI39289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="62"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="9119" checksum="1986A9647EDFABDE" modified="2018-12-05" version="1" fragment="single">MLYKDDDNLKKLNKADDKLEEILEKNVRKPKHIGLSYENVNKHRRYNPELMYTQPNTTQKRQMPQQMPHHPQQHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVC1</accession>
    <name>A0A392RVC1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010276197">
        <property type="protein sequence ID" value="MCI40122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="87" mass="9859" checksum="2EC275AAF6433D52" modified="2018-12-05" version="1" fragment="single">MIDLPPSLANLPDVFHVSQLRKYVADPSHVIELDNVQVRDDLTVETIPLRIEGREVRKLRNKEIASVKVVWGGPVGENATWELESKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RY32</accession>
    <name>A0A392RY32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010287447">
        <property type="protein sequence ID" value="MCI41067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RY32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10668" checksum="CF95E2F2E49B91FE" modified="2018-12-05" version="1" fragment="single">MAKELEMIEEFRDLSLVCERMTRSVKMGMLRLTNHFLEEVVEKQRTDVRLLKYKALIKKGKELDIKIDENGVMRCRGRVCVPDVPELKRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0M6</accession>
    <name>A0A392S0M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010304432">
        <property type="protein sequence ID" value="MCI42431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8214" checksum="CD2DAD3BDE429EF9" modified="2018-12-05" version="1" fragment="single">AWRQLATNQQKVCHSLATSGEYWRPRRHSSPGDNHERRLATSRSSPGDSTQSMVLCGGLSPNPPKNSFKHVINS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S187</accession>
    <name>A0A392S187_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010307239">
        <property type="protein sequence ID" value="MCI42653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S187"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5848" checksum="FC7AEB461E8E6FE3" modified="2018-12-05" version="1">MEVGARYDYGFQFALEQLQIVFPDLDDAKLGELDALNMIVDGKLVLFAPTNAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2U5</accession>
    <name>A0A392S2U5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010303320">
        <property type="protein sequence ID" value="MCI42340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6309" checksum="85CB5CC4628C3344" modified="2018-12-05" version="1" fragment="single">MMGLSERPRDVSFNGKREISLRRTSTSFKLPILRELRLGNLQKILGRRGRGVALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4U8</accession>
    <name>A0A392S4U8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010317628">
        <property type="protein sequence ID" value="MCI43452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4U8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6647" checksum="C1E58198FAEB436C" modified="2018-12-05" version="1">MSISSVNGDPRGDCPVWGPDDGEFFPVGMVMEEKVSPREVWGWGRDFIPRPAETPSPKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S768</accession>
    <name>A0A392S768_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010334752">
        <property type="protein sequence ID" value="MCI44741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S768"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2099" checksum="055AC78443A8ABFB" modified="2018-12-05" version="1" fragment="single">MTMAAPGHLNVTESPSRGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8F9</accession>
    <name>A0A392S8F9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010334767">
        <property type="protein sequence ID" value="MCI44742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8F9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="109" mass="12538" checksum="F54E3580DC3A0CD1" modified="2018-12-05" version="1" fragment="single">PLRTYLERFNKAAIKVKTDNRVKLYLLDRGLSRGSDFAKAIGIEEIKTLDAFFEKAQKYIAYEEKQVATEVRRPKSQDEAGPSRRGGDKRNEEKIRESKPPPSKFTGYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDE1</accession>
    <name>A0A392SDE1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">peroxidase</fullName>
            <ecNumber evidence="3">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="9">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010357911">
        <property type="protein sequence ID" value="MCI46462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31235">
        <property type="entry name" value="PEROXIDASE 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 12" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="11">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="1"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="3"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI46462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8432" checksum="9B9E2B7C230B4076" modified="2018-12-05" version="1" fragment="single">GCDASILLNGNGTEKNERDHPANFGLRDEAIQAIEDIRAIIRVQCPRVVSCADILVIAAREAVRQVIIYCCLNIYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFR8</accession>
    <name>A0A392SFR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010366466">
        <property type="protein sequence ID" value="MCI47044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000151">
        <property type="term" value="C:ubiquitin ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044515">
        <property type="entry name" value="ABTB1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46231">
        <property type="entry name" value="ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46231:SF1">
        <property type="entry name" value="ANKYRIN REPEAT AND BTB_POZ DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI47044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9705" checksum="EDEBB6B990F7F2CE" modified="2018-12-05" version="1" fragment="single">MFADTKDFRALLLTLPPPSGDSSLRTTVPSMPGSALNNDQGNLLDDLRDKWLEIEAAELDERDESALQFDKRLEMLMLVAEHEKSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SI30</accession>
    <name>A0A392SI30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010382023">
        <property type="protein sequence ID" value="MCI48122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SI30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4550" checksum="BCADD0D2DEBFBCC9" modified="2018-12-05" version="1" fragment="single">LALVIPLRFRLHQVASEQAFSCSFRSLNSHGRSTSHQDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SP42</accession>
    <name>A0A392SP42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010412515">
        <property type="protein sequence ID" value="MCI50177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SP42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="2939" checksum="1F5358B8A7FA73E9" modified="2018-12-05" version="1">MAGVEGEPSSDKGFGEPVTKSAKLFTLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7Z2</accession>
    <name>A0A392T7Z2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010524151">
        <property type="protein sequence ID" value="MCI57149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7697" checksum="03FF0999DA5B59A2" modified="2018-12-05" version="1" fragment="single">AQVFDEVSARMEEEEAIRKDPSLKGKSREEMGLNPFSGTVIKSVLAGLEIIISRAHIAKLLGVDDSGKKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAS8</accession>
    <name>A0A392TAS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010538630">
        <property type="protein sequence ID" value="MCI57992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="5958" checksum="5A27AE41F5FA8A11" modified="2018-12-05" version="1" fragment="single">AMSPDREGAGGVRRSGGGASVHGGVRLVVLDSRCGDVCGFDGGGEISPSFPVVGGGCCYND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBR2</accession>
    <name>A0A392TBR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010538717">
        <property type="protein sequence ID" value="MCI58004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2689" checksum="2D80B2CCF52EACEB" modified="2018-12-05" version="1" fragment="single">IKLFTCVPPYYDLQPVPALIRIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCP5</accession>
    <name>A0A392TCP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010554064">
        <property type="protein sequence ID" value="MCI58923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9444" checksum="5051A64E70E8CBFA" modified="2018-12-05" version="1" fragment="single">RVVEENDGPKEIDGGYMEDQLRWSVAASSCNSGGGRPAFVVLEGLGDDNSDCGASERCQREVAESTGGFDILENIGTKSLCVAVHGVDIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKP4</accession>
    <name>A0A392TKP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010601150">
        <property type="protein sequence ID" value="MCI61518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9509" checksum="3700EE89387DF51F" modified="2018-12-05" version="1" fragment="single">DSIDQPLHKTFGGSIAKRLRNRKGKVVPSASEPAKATKKSAVIGPKKGWSKVMVPADKKKKNLDMKSAPSSDSEYDVEQDVPNIMTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKU1</accession>
    <name>A0A392TKU1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010587497">
        <property type="protein sequence ID" value="MCI60756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="55" mass="6213" checksum="DE2DCEE9CFC74877" modified="2018-12-05" version="1" fragment="single">MVVRSLDVEKDPFRPKEEDEELIGPEVPYLSAIGALMYLANYTRPDIAFSVNLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKY7</accession>
    <name>A0A392TKY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010588153">
        <property type="protein sequence ID" value="MCI60790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7956" checksum="200BE7B238E4183F" modified="2018-12-05" version="1" fragment="single">MYTTTGAARRRQNQYVPSKQIWRAAQHPWARRAATRNHQKLQFKHFELVMAPLEPIPTKPNLKQHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN12</accession>
    <name>A0A392TN12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010621161">
        <property type="protein sequence ID" value="MCI62569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3060" checksum="F3BED371E6774C97" modified="2018-12-05" version="1">MAQTPSCSTQRAKASARNNEPIILLGITS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQZ8</accession>
    <name>A0A392TQZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010626827">
        <property type="protein sequence ID" value="MCI62867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9509" checksum="528F020B98B2FE62" modified="2018-12-05" version="1" fragment="single">MNNGGESSTDAKFGSGGALPCVGRFRRSWSRRHLKRKTRAYFFSLDELNPSEVALHHRLEAFFDKLKGDFINTRNVLTQGNRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUX7</accession>
    <name>A0A392TUX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010651894">
        <property type="protein sequence ID" value="MCI64247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="11" mass="1044" checksum="3C3FF124DDC2C728" modified="2018-12-05" version="1" fragment="single">MAAGLVAAEDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW58</accession>
    <name>A0A392TW58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010654140">
        <property type="protein sequence ID" value="MCI64356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="34"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7445" checksum="C363541DDA5CE0F8" modified="2018-12-05" version="1" fragment="single">AREAQLVRDTAAVMRLLETTLVLNNEETCPAAELKKLQFKNEKLRGELTRVENAFTDYREKHEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWR6</accession>
    <name>A0A392TWR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010673734">
        <property type="protein sequence ID" value="MCI65338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2660" checksum="4C342D8091317C68" modified="2018-12-05" version="1" fragment="single">MMQKSMTGFNNMSVLPLGRAIYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYX1</accession>
    <name>A0A392TYX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010688192">
        <property type="protein sequence ID" value="MCI66078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2862" checksum="A7309396FF0C29E7" modified="2018-12-05" version="1" fragment="single">MSLEKQKAIKEETQKLVKANFIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U016</accession>
    <name>A0A392U016_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010702177">
        <property type="protein sequence ID" value="MCI66782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U016"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5141" checksum="D3F6024913E83AF0" modified="2018-12-05" version="1" fragment="single">MILVLQQSRGLSLKMPRQPSVGEKSVVIPSPSCSAAHRESQPSPAQNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U224</accession>
    <name>A0A392U224_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010695585">
        <property type="protein sequence ID" value="MCI66446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U224"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3672" checksum="F9332776DFD6E254" modified="2018-12-05" version="1" fragment="single">MDSPKSNSDCRMSLTAGNPGPEFKVVSFTSPSIPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5S0</accession>
    <name>A0A392U5S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010743797">
        <property type="protein sequence ID" value="MCI68829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="65"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="31"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="51"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI68829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9062" checksum="4E6209A98D70D576" modified="2018-12-05" version="1" fragment="single">GFSEIRDFPTLTTKARICDEDGKAKSSYYKALNDRKGKGQDRGRPYDNKGKGNGNGGRKQGNGQCYKCGARGHMSYDCPHKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5T6</accession>
    <name>A0A392U5T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010730825">
        <property type="protein sequence ID" value="MCI68114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9130" checksum="82A8550D6644C54E" modified="2018-12-05" version="1" fragment="single">MAQRALADAMELMANAMAQKAVSRTVDRVAQEARRGREDELRLEKFMNNKPPIFKGVYDPDGAQQWIKGIERIFGAMRCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6U1</accession>
    <name>A0A392U6U1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010751723">
        <property type="protein sequence ID" value="MCI69231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6U1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9004" checksum="7A18FFF803E37043" modified="2018-12-05" version="1" fragment="single">GITITGADIGTEPTEDRKRKIVAASGTGKEKAKVVEKEKKKKATTSGSDKENVTKKQRTQKKRAPKVPRKFVVYEEDDEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7S8</accession>
    <name>A0A392U7S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010756037">
        <property type="protein sequence ID" value="MCI69442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4280" checksum="1AC78D106E5964E4" modified="2018-12-05" version="1" fragment="single">MKFPITTPATSLPSTSSSYTLNPPPPPPCLTHASPNFKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDG6</accession>
    <name>A0A392UDG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010782338">
        <property type="protein sequence ID" value="MCI70754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4798" checksum="45123770402CF19A" modified="2018-12-05" version="1" fragment="single">SKNMNIEAKRARARASQRGEEHEQEREKSCAKNHQPRYESG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEH2</accession>
    <name>A0A392UEH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010769255">
        <property type="protein sequence ID" value="MCI70125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017392293" evidence="1">
        <location>
            <begin position="17"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4818" checksum="F0674F148BBA03F1" modified="2018-12-05" version="1" fragment="single">MMLLFVAVSSVLACSSFPVPAFSCSCVLGKEKISFSVRPPPLSQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGU6</accession>
    <name>A0A392UGU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010786003">
        <property type="protein sequence ID" value="MCI70935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5646" checksum="9A0A8B2BDDEB43FB" modified="2018-12-05" version="1" fragment="single">SGELASAARIVDVAGEDSSWHMLSGELAYFGSFAVVVGVDIVAPEYRVVKVSFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ48</accession>
    <name>A0A392UQ48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010885941">
        <property type="protein sequence ID" value="MCI75572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6995" checksum="FAEDEC55E8BFB9D8" modified="2018-12-05" version="1" fragment="single">MNNKPPIFKGGYDPDGAQTWLEGIKRIFGAMRCLDEHKVLLGGYVLHDEADHWWGNAKQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT39</accession>
    <name>A0A392UT39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010888349">
        <property type="protein sequence ID" value="MCI75666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3038" checksum="35B26F1B2AF9044A" modified="2018-12-05" version="1" fragment="single">GPMVIDAELGREDHGSIPETAIGTELAGTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTQ2</accession>
    <name>A0A392UTQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010893512">
        <property type="protein sequence ID" value="MCI75896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4637" checksum="93C779135ADD2110" modified="2018-12-05" version="1">MWIGGRKVALIAEGRVLRMDLEDSDGELSVGMRNVMCKALES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V311</accession>
    <name>A0A392V311_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011019070">
        <property type="protein sequence ID" value="MCI81441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V311"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="9032" checksum="B7E7E0166BDF8314" modified="2018-12-05" version="1" fragment="single">AKETVEEKGREGNDHEVVVLSEEQYFKIQEELARLARQQEEMLWLMQLREKKDELREKKDEEFRQLLTSVLRNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5L9</accession>
    <name>A0A392V5L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011069005">
        <property type="protein sequence ID" value="MCI83517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5L9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5409" checksum="275D96CD9A86EB68" modified="2018-12-05" version="1" fragment="single">GTSCGTTNGSWMQEEKSNRKAYGSSNGCWKQVKVDVKIKVQVGLGFDLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8J8</accession>
    <name>A0A392V8J8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011074998">
        <property type="protein sequence ID" value="MCI83763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8J8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7563" checksum="00C6FE8BCADBD185" modified="2018-12-05" version="1" fragment="single">VSASARRKKAAENPPKKRARKSKEARADDDETAHPAPEHHEGDPAQAVPAQANAMEEGHSGDDRDNIVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V979</accession>
    <name>A0A392V979_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011068161">
        <property type="protein sequence ID" value="MCI83481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V979"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7114" checksum="E336CCAABBD4CBFA" modified="2018-12-05" version="1" fragment="single">AEEVNQIQRNLQISTDLETIKDSKKNPANLNRFVSGERIPYRRKPIPHGINLTPAAPDPTPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VA09</accession>
    <name>A0A392VA09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011082578">
        <property type="protein sequence ID" value="MCI84089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VA09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF39">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7234" checksum="A10444ED0764D2B3" modified="2018-12-05" version="1" fragment="single">MVTEGIVLGHKVSTKGIEVDRAKIEVIEKLPPPVNVKGIRSFLGHAGFYRRFIKDFSKIAKPLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAQ9</accession>
    <name>A0A392VAQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011115104">
        <property type="protein sequence ID" value="MCI85428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6684" checksum="F293A3476E10F004" modified="2018-12-05" version="1" fragment="single">MRNLHKLRYSYTGPYQYMEVWEALRNDITKDLDRIQNGDMNELFAFQKNIKEWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VD38</accession>
    <name>A0A392VD38_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011123608">
        <property type="protein sequence ID" value="MCI85777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VD38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="31"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8404" checksum="B1BD533ADFB3B554" modified="2018-12-05" version="1" fragment="single">EGAVNWLEEVEIIFEAMGCSEENKVTLGTYVLREEANHWWKNARQRLGAGGAVITWERFKREFLIKYFPADV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VDK5</accession>
    <name>A0A392VDK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011113718">
        <property type="protein sequence ID" value="MCI85369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VDK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5895" checksum="6CF3BB1729E77067" modified="2018-12-05" version="1" fragment="single">MFQKTPEAIMTGNNSSDNTVVNSQSDESMKIVVGDGEKDTSVDPDDVMTQCLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJM8</accession>
    <name>A0A392VJM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011170941">
        <property type="protein sequence ID" value="MCI87632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5454" checksum="2F02C259145D02F1" modified="2018-12-05" version="1" fragment="single">MAGENSHPPPPPITLQVAIAEIRRLQTKMASVEKGKADKEVGNEEDEIID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VS39</accession>
    <name>A0A392VS39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011262589">
        <property type="protein sequence ID" value="MCI91096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VS39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6162" checksum="AC5550F36089186E" modified="2018-12-05" version="1" fragment="single">MGVLGSIGESHTMKVEGRIQNVEILVLIDSGASHNFISPKVTTALGLSITPTTAKSIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYK0</accession>
    <name>A0A392VYK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011330106">
        <property type="protein sequence ID" value="MCI93474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6998" checksum="9E61111D61B19204" modified="2018-12-05" version="1" fragment="single">MTSSDWLALFPVRRNFFKYYFKFENLWLKEEDVDVVVEEGWCREGDVEVTERVEACAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0F2</accession>
    <name>A0A392W0F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011323483">
        <property type="protein sequence ID" value="MCI93229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4506" checksum="B41B24AE685027B9" modified="2018-12-05" version="1" fragment="single">MEKQNVDEKLLKYKALIERGKELDVKIDENGVMRCRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W207</accession>
    <name>A0A392W207_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011324451">
        <property type="protein sequence ID" value="MCI93261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W207"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="25"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI93261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6653" checksum="209695F86A44398D" modified="2018-12-05" version="1" fragment="single">MVAGYANCGDMKAATELYDVMSGKDEVTWVAMIAGYGKLGNVSEARRIFDEISVSRDPSTCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3B0</accession>
    <name>A0A392W3B0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011328377">
        <property type="protein sequence ID" value="MCI93405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3B0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5069" checksum="FA0E84DA864D13A2" modified="2018-12-05" version="1" fragment="single">TVIMQPLFFCIGAPLLVSLPPLTVLPFGDAAVMMLWEFDNSDDDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3K2</accession>
    <name>A0A392W3K2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011353213">
        <property type="protein sequence ID" value="MCI94323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2105" checksum="A7AB43667A69B766" modified="2018-12-05" version="1" fragment="single">NGRNCSGAASTPPESISDLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3V6</accession>
    <name>A0A392W3V6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011355773">
        <property type="protein sequence ID" value="MCI94433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3V6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3378" checksum="26EACB7A5A8958CC" modified="2018-12-05" version="1" fragment="single">VCRDLQVSRRHVCLHFGDYFARKSFYAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W885</accession>
    <name>A0A392W885_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011427150">
        <property type="protein sequence ID" value="MCI96888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W885"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4502" checksum="63ECD057AB23629B" modified="2018-12-05" version="1" fragment="single">MGSWVRGEREWEFRWRTNLDIQDHDILTDLIESLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAR1</accession>
    <name>A0A392WAR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011425019">
        <property type="protein sequence ID" value="MCI96822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4167" checksum="E7559AF103EC7C69" modified="2018-12-05" version="1" fragment="single">MNGVFCIYVCDNHTTAALWNPATADVKVIPPGSAEFQGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WD05</accession>
    <name>A0A392WD05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011450013">
        <property type="protein sequence ID" value="MCI97639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WD05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5135" checksum="9DCFD5233BEA516A" modified="2018-12-05" version="1" fragment="single">NPVNSTVAGREKATGSQQKSENSWLEREKAAGLARRLAGRACPVLRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MX74</accession>
    <name>A0A392MX74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Beta-amyrin synthase</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the terpene cyclase/mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020630">
        <property type="protein sequence ID" value="MCH91539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005811">
        <property type="term" value="C:lipid droplet"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042300">
        <property type="term" value="F:beta-amyrin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016104">
        <property type="term" value="P:triterpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032696">
        <property type="entry name" value="SQ_cyclase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018333">
        <property type="entry name" value="Squalene_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002365">
        <property type="entry name" value="Terpene_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11764:SF58">
        <property type="entry name" value="BETA-AMYRIN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11764">
        <property type="entry name" value="TERPENE CYCLASE/MUTASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13243">
        <property type="entry name" value="SQHop_cyclase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="Terpenoid cyclases/Protein prenyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01074">
        <property type="entry name" value="TERPENE_SYNTHASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Squalene cyclase C-terminal" evidence="4">
        <location>
            <begin position="6"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH91539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="24982" checksum="DF04FDC8F944F578" modified="2018-12-05" version="1" fragment="single">VRHNPSGDFKSMYRHTSKGSWTFSDQDHGWQVSDCTADGLKCCLLLSMLPPEIVGEKIEPERLYDAVNLLLSFQESTSKNGGVTXWEPAGAQKWLEVLNPTEFFADIVVEYEYVEPTGPAIQALVLFKELYPEHRKKEIENFITNAVRFIEETQKDDGSWYGSWGICFTYGSFFALGGLAAAGKTYNNCAAIRKAVKFLLTTQREDGGWAESYLSCPKKVQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7K4</accession>
    <name>A0A392N7K4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAS1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030535">
        <property type="protein sequence ID" value="MCH95731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000782">
        <property type="entry name" value="FAS1_domain"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50213">
        <property type="entry name" value="FAS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAS1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6565" checksum="6071BFEC3CB76FA6" modified="2018-12-05" version="1">MEAYENTTGITLFMPEDMAFANLPAPIRNLTVYKEINGKVRDAVISLVMHYLEMTRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCX7</accession>
    <name>A0A392NCX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retinoblastoma-related protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035608">
        <property type="protein sequence ID" value="MCH97670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005667">
        <property type="term" value="C:transcription regulator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000977">
        <property type="term" value="F:RNA polymerase II transcription regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030154">
        <property type="term" value="P:cell differentiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:2000134">
        <property type="term" value="P:negative regulation of G1/S transition of mitotic cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002719">
        <property type="entry name" value="RB_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028309">
        <property type="entry name" value="RB_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13742:SF17">
        <property type="entry name" value="RE32990P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13742">
        <property type="entry name" value="RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01857">
        <property type="entry name" value="RB_B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retinoblastoma-associated protein B-box" evidence="1">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Retinoblastoma-associated protein B-box" evidence="1">
        <location>
            <begin position="130"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="21945" checksum="C37B6D92C0725A84" modified="2018-12-05" version="1" fragment="single">FSKLNLSFWEILHSYKQQPECRSPVFRSVFVDCPLAGNNDDGQQKRVGIITFYNDIFTPSVWPLVMELVTDEETVKSDQLAEVVNSKDGHLAQCLVSPKIVPFPRFPVMHREKRYPTKNLRVSPLSSSEIIMLGAVRIDGMVEKLQLSQQTGENVYYLFQRILTLRPHIFSDFHIDQIILCCFRAVAKVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND19</accession>
    <name>A0A392ND19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035869">
        <property type="protein sequence ID" value="MCH97766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7511" checksum="5DDB8AA8924234DB" modified="2018-12-05" version="1" fragment="single">KSGVKLKVPDGAVTVNKVINRTWISFATGVLSTVMLLTPPSGIRLVIVCRDFLVTEVVRPNLVDLRGSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NDZ0</accession>
    <name>A0A392NDZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010036306">
        <property type="protein sequence ID" value="MCH97942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="14226" checksum="7E6C0415B9FF484C" modified="2018-12-05" version="1">MVRGDEDDEEYIDGEKENENEHVGGNGAENVQENMNHEYVPDPAELQAYREEYEQLNQGSTWIPWMGIQTVGWSNQGDVVHTRWDQHTAEGYXDGCEWRPWGGNQENCQHDDGSHQDQEFSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NG96</accession>
    <name>A0A392NG96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037399">
        <property type="protein sequence ID" value="MCH98363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NG96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF16">
        <property type="entry name" value="OS04G0516500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="118"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="22115" checksum="34D685E1E6E4D5A2" modified="2018-12-05" version="1" fragment="single">MWKEVIRCKYGEEVVGRVEMGEDNVPWFSSLWWKDITSIGQNLDRNWFAQEVVKNLGNGRNTSFWKDKWVGVRPLKESFPRLFSISTQKQESVAGVWNGAGTAEEDKWRWSPGTNGEFSVKSTYVLVSNLLLGRDSIDREQASVFKVIWTCPAPSKVSGFSWMLLNNRIPTKDNLFQRQIIQQGDEQLCVMC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHU3</accession>
    <name>A0A392NHU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038215">
        <property type="protein sequence ID" value="MCH98665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11154" checksum="AB3A4B8C95A4CC2B" modified="2018-12-05" version="1">MKGEPISVGGLISRSIKAMVTAAIVYVGHPFIISFLCERLGVPTRSRDEIRGPIEPIGKKFFWKAHKVADLAYAKHTAAEAAAAAPPPPPPHQQQHHVPPHIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIG1</accession>
    <name>A0A392NIG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uridine-cytidine kinase C-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040666">
        <property type="protein sequence ID" value="MCH99572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15169" checksum="8228575F59348602" modified="2018-12-05" version="1" fragment="single">NQVLVHVVLKVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMTLPDDLKSKLSIEDDLVSSPKEALSRASADRRMKYLNRGVSQSYSNQRDKILPKLTKLAINNRSFNGRALESPAPMANQKSYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJU4</accession>
    <name>A0A392NJU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041038">
        <property type="protein sequence ID" value="MCH99691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10118" checksum="7BBFB9BD8AB2E0E1" modified="2018-12-05" version="1">MRRTQPNSTEVIDDIIMLINGLGPALGDIYNALMQRSQIPAFFIVGSSPMLRFRPPAQSNLSNGPPSEFFILYLSSVTNSGAVCGNQVSLIFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKF1</accession>
    <name>A0A392NKF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDSL' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042746">
        <property type="protein sequence ID" value="MCI00283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001087">
        <property type="entry name" value="GDSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835:SF219">
        <property type="entry name" value="GDSL-LIKE LIPASE_ACYLHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835">
        <property type="entry name" value="ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00657">
        <property type="entry name" value="Lipase_GDSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13150" checksum="4D567F8B56E9CADD" modified="2018-12-05" version="1" fragment="single">NIYEQGGRSFWIHNTGPVGCMPVNLFYKHDVPAGYLDQYGCVKDQNVMAVEFNKQLKDRVVKLRTEVPEAAITYVDVYAAKYGLISNTKNEGNLFIIDMTRLNRSCVAILDIAEKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM35</accession>
    <name>A0A392NM35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042379">
        <property type="protein sequence ID" value="MCI00156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF6">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="114"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="224"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="224"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="249"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="278"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="304" mass="34097" checksum="0820DBA875DA0936" modified="2018-12-05" version="1" fragment="single">MPKKSNKPTMGDRVDALEGRIDEVQTTLQSLIAQMETQSLAISEMNKQLGKQKTSPESETSVGGSSYNESRLAGKKVKLPVFEGDDPVAWITRAEIYFDVQNTPDDMRVKLSRLSMEGSTIHWFNLLMETEDELSWEKLKKSLIARYGGRRLENPFEELSTLRQTGSVEEFVEAFELLSSQVGRLPEEQYLGYFMSGLKAPIRRRVRTLNPQSRMQLMRMAKDVEDELKEEDDDGTRHXGKNRVGHTEANGSSFKSRNGPNSTHKDLTRSNPGWTNPSQKSGSIGSSPNSTSSMSSTGRKGEND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPV9</accession>
    <name>A0A392NPV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nuclear pore complex protein Nup205-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NUP186/NUP192/NUP205 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043507">
        <property type="protein sequence ID" value="MCI00535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005643">
        <property type="term" value="C:nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021827">
        <property type="entry name" value="Nup186/Nup192/Nup205"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31344">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31344:SF0">
        <property type="entry name" value="NUCLEAR PORE COMPLEX PROTEIN NUP205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017485703" evidence="5">
        <location>
            <begin position="20"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI00535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13860" checksum="0D12890EE016B055" modified="2018-12-05" version="1" fragment="single">ITFSLLFALVIAFVSDGLSTVPDKASVLSSNTSFRHEFHELVMATGNDPIVEGFTGGIRLAWVVHLMLIQEGVAARETVSSASSNEMSYLSQCLEVVFSNNVFQFLLEKVLRTAAFQVHLPSYTFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSN0</accession>
    <name>A0A392NSN0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048330">
        <property type="protein sequence ID" value="MCI02169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF34">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="113"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="177" mass="19552" checksum="07CB2B2631DE051C" modified="2018-12-05" version="1" fragment="single">MADHVLRGLDDGYRAVIDGVNARDTLITFDDLLKKLLIHELFIVAAQRQTPAPVTTLNAQARPNYNNNSNKPRSGQFPTPSNQRTSNRKPFLGRCQWCNVKGHVLSQCQLFKQQHLGNPPPPRDSPTHTGHAQAYTAGAGPSQNNFLVDSGATHHVTNDLANLALHHPYTGRDSLFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUL3</accession>
    <name>A0A392NUL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051251">
        <property type="protein sequence ID" value="MCI03122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018790">
        <property type="entry name" value="DUF2358"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31094:SF7">
        <property type="entry name" value="PLANT_F3O9-12 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31094">
        <property type="entry name" value="RIKEN CDNA 2310061I04 GENE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10184">
        <property type="entry name" value="DUF2358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="NTF2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18666" checksum="9341262BF023F9AB" modified="2018-12-05" version="1" fragment="single">DDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFLWGPLDSNSCSWIEFYQAVKGTLDQERQLLPQDGLATCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVD9</accession>
    <name>A0A392NVD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Folate transporter/carrier-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the mitochondrial carrier (TC 2.A.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051265">
        <property type="protein sequence ID" value="MCI03129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVD9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006862">
        <property type="term" value="P:nucleotide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.40.10">
        <property type="entry name" value="Mitochondrial carrier domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023395">
        <property type="entry name" value="MCP_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018108">
        <property type="entry name" value="MCP_transmembrane"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044712">
        <property type="entry name" value="SLC25A32-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45683">
        <property type="entry name" value="MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00153">
        <property type="entry name" value="Mito_carr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103506">
        <property type="entry name" value="Mitochondrial carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50920">
        <property type="entry name" value="SOLCAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4 8 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="repeat" description="Solcar" evidence="8">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI03129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8457" checksum="8496819F38C17B9A" modified="2018-12-05" version="1" fragment="single">VIRTRLQQRPDGDGIPRYINSWHVVKETARFEGIRGFYKGITPNLLINIPVASMSFIVYENVLKLLKLSKRND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8I7</accession>
    <name>A0A392P8I7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Inositol transporter 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066664">
        <property type="protein sequence ID" value="MCI07789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8I7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017219511" evidence="1">
        <location>
            <begin position="19"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6142" checksum="239B0181F34ADF4B" modified="2018-12-05" version="1" fragment="single">FSLIGLVAIYLLVPETKGLQFEEVEKLLQKGFRPFPFDSKKDVNKGKEVMEDVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PH66</accession>
    <name>A0A392PH66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HUA2-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075440">
        <property type="protein sequence ID" value="MCI10225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PH66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="148" mass="16067" checksum="798B2D7CD282C65F" modified="2018-12-05" version="1">MIFRENKSSFEEDKQLAKSQQHESGNDVIPGAKHQIGEDPSDSVVCAPAKIDSQVLMHEKLSPNLDVKCCQVGGNQDSPKADESIRPAIHSTTSDTLDHHGINFDPVAGPNESGELLPQKCISTPQNLMVVCEDMKGTADDRSQINDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHX5</accession>
    <name>A0A392PHX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CST complex subunit TEN1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081171">
        <property type="protein sequence ID" value="MCI11693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990879">
        <property type="term" value="C:CST complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010521">
        <property type="term" value="F:telomerase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042162">
        <property type="term" value="F:telomeric DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032211">
        <property type="term" value="P:negative regulation of telomere maintenance via telomerase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029146">
        <property type="entry name" value="Ten1_animal_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33905">
        <property type="entry name" value="CST COMPLEX SUBUNIT TEN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33905:SF1">
        <property type="entry name" value="CST COMPLEX SUBUNIT TEN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15490">
        <property type="entry name" value="Ten1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6520" checksum="354C62921A8693E2" modified="2018-12-05" version="1" fragment="single">MCHASHRLQEYSLETGLATVIDGSDILKVSIEQLKDLKFQVGSVYQFIGELLIQPDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJQ5</accession>
    <name>A0A392PJQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Xylosyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081161">
        <property type="protein sequence ID" value="MCI11690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9028" checksum="8437E49610546BFB" modified="2018-12-05" version="1" fragment="single">MGSSTQPVELRVKELEVSGSSPDKEKTNISMYCVDDAFSTFYCILSMRLGTWDNFPRIVLMYYANFLSSPERYFHTII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJX7</accession>
    <name>A0A392PJX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Anthranilate synthase component II-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080746">
        <property type="protein sequence ID" value="MCI11596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050472">
        <property type="entry name" value="Anth_synth/Amidotransfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418:SF4">
        <property type="entry name" value="MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418">
        <property type="entry name" value="MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00097">
        <property type="entry name" value="ANTSNTHASEII"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00099">
        <property type="entry name" value="CPSGATASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00096">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017235860" evidence="2">
        <location>
            <begin position="20"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase" evidence="3">
        <location>
            <begin position="22"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI11596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10039" checksum="94273A5AE4D945E7" modified="2018-12-05" version="1" fragment="single">MVLVLTKLVILXXXXXXXXXXXELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGEPQDSGISLQTVLELGPTVPVFGVCMGLQCMGEAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PP21</accession>
    <name>A0A392PP21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085027">
        <property type="protein sequence ID" value="MCI12645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PP21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6588" checksum="CDD64F19DBD259DC" modified="2018-12-05" version="1">MASISIAIATRSIKNGCVTEGEWFSYISGASIEEDYHNGDGDSYREGDDDDDGDYDYAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQ05</accession>
    <name>A0A392PQ05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF674 family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091293">
        <property type="protein sequence ID" value="MCI14178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQ05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007750">
        <property type="entry name" value="DUF674"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05056">
        <property type="entry name" value="DUF674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8926" checksum="4F06EF5F0F7E2AB7" modified="2018-12-05" version="1">MKRPALYGVGNDLHVKPLSANFFLSYLKELSLPFDDLEVKEISIGEAEALRFLGAFLTSKFTLTSGLQDFLNVPNLESTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTH9</accession>
    <name>A0A392PTH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096337">
        <property type="protein sequence ID" value="MCI15403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050667">
        <property type="entry name" value="PPR-containing_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47939">
        <property type="entry name" value="MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47939:SF5">
        <property type="entry name" value="PENTACOTRIPEPTIDE-REPEAT REGION OF PRORP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="42"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="77"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI15403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13983" checksum="B59754B7F6F3A64C" modified="2018-12-05" version="1">MGKLFPRAVDRSMTIMQHCNEGTIEDAKKVCDKMIDEGGIPSILVYNSLVHGFSQHGSIREAVELINEMIGNNCFPIASTFNAVIIGFCRQGKIESALKFMEDITARGRPSESLAGLFRNGREGYPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PV15</accession>
    <name>A0A392PV15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096785">
        <property type="protein sequence ID" value="MCI15507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PV15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12231" checksum="DC9CD2BA2BB2D7CF" modified="2018-12-05" version="1" fragment="single">GDNQMVHVFPLRINYLQSGCVHNMVCVVSSKDWVTPSSIRMAFEPVRNSYLPNLARKRHLLFLARPRSVSKLACYEDEGPARHFPTCRLASGIRVAFRFWDDGPYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PY11</accession>
    <name>A0A392PY11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101255">
        <property type="protein sequence ID" value="MCI16522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PY11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="41"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12024" checksum="528EF1E26565BA8D" modified="2018-12-05" version="1" fragment="single">MVAWSVELSESDLTFSPRGAIKSQMLADFELEMSTLPGEETTLPWILSVDGASNIRGSGAGVVLDGPDGVLIKQSLRFAFKASNNQAEYEALIAGMKLAKEMEVTDLKAKSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1Z7</accession>
    <name>A0A392Q1Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">U2 small nuclear ribonucleoprotein B''-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108076">
        <property type="protein sequence ID" value="MCI18007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="27"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI18007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7477" checksum="7EA567A317D7050D" modified="2018-12-05" version="1" fragment="single">AVVGSDNRVPVAREQHGKGGGNGGPCSTLFIANLGPNCTEDELKQAFSVYDGFNMVKMRSRGGMPVAFADF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3J0</accession>
    <name>A0A392Q3J0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112212">
        <property type="protein sequence ID" value="MCI18881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3J0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3309" checksum="67C7E7AC6928D98E" modified="2018-12-05" version="1" fragment="single">MSTIPTTQSFKHRIHNRLPSSQSSRISPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5P6</accession>
    <name>A0A392Q5P6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">G-box binding factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114838">
        <property type="protein sequence ID" value="MCI19444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5P6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="7894" checksum="AD48D15DB811EBFC" modified="2018-12-05" version="1" fragment="single">GPNSHGQGIPSSPAAGTPSSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNAENAERGAENRLSRRFVLCDDYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9C5</accession>
    <name>A0A392Q9C5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="17">L-type lectin-domain containing receptor kinase IX.1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the protein kinase superfamily. Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the leguminous lectin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116909">
        <property type="protein sequence ID" value="MCI19855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9C5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002229">
        <property type="term" value="P:defense response to oomycetes"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000240">
        <property type="entry name" value="Lectin-domain containing receptor kinase A4.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052059">
        <property type="entry name" value="CR_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47973">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="17" id="KW-0430">Lectin</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 17" id="KW-0675">Receptor</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="16">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="15">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCI19855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="183" mass="20029" checksum="B4893A454879CD95" modified="2018-12-05" version="1" fragment="single">VLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLGEDNIYLVDWVWELYGIGEVLKACDSRLYGEFNEKEIERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPNLPLQMIGSTYNTSFYSVSSKSKTPDFATKTSTSSNSTFTGTGSSSQSSTAFEVISPSAALLNTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAY8</accession>
    <name>A0A392QAY8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transposase (putative) gypsy type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121301">
        <property type="protein sequence ID" value="MCI20716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007321">
        <property type="entry name" value="Transposase_28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099:SF49">
        <property type="entry name" value="MYOSIN HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31099">
        <property type="entry name" value="OS06G0165300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04195">
        <property type="entry name" value="Transposase_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transposase (putative) gypsy type" evidence="1">
        <location>
            <begin position="63"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="191" mass="22696" checksum="88ABB8528273AF54" modified="2018-12-05" version="1" fragment="single">PKPRGIASVFTPTYSGVFTIVEEGWEVQQNWEVHRPDPEHRICSKFTDDRFGMYEFTFKDLMMRLPFSELVVRVFDWLDLAPSQLHPNSLAFIRAFELLCEYLEVRPTVPLFFRIFKLQRQXXXXXXQGWVSLKQEEKLFKMFVDSIRGFKKRFYIVRPLMQFAMDNLFESELDTDENGVVPRDEEGNELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBV8</accession>
    <name>A0A392QBV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative tRNA (Cytidine(32)/guanosine(34)-2'-O)-methyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124505">
        <property type="protein sequence ID" value="MCI21362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4434" checksum="94C63CC45E4A5227" modified="2018-12-05" version="1" fragment="single">AFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVEDTGICRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QC81</accession>
    <name>A0A392QC81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">21 kDa protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the PMEI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010126601">
        <property type="protein sequence ID" value="MCI21754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046910">
        <property type="term" value="F:pectinesterase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd15798">
        <property type="entry name" value="PMEI-like_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.40:FF:000005">
        <property type="entry name" value="Pectin methylesterase inhibitor 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.40">
        <property type="entry name" value="Invertase/pectin methylesterase inhibitor family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035513">
        <property type="entry name" value="Invertase/methylesterase_inhib"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006501">
        <property type="entry name" value="Pectinesterase_inhib_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051955">
        <property type="entry name" value="PME_Inhibitor"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01614">
        <property type="entry name" value="PME_inhib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31080">
        <property type="entry name" value="PECTINESTERASE INHIBITOR-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31080:SF64">
        <property type="entry name" value="PLANT INVERTASE_PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04043">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00856">
        <property type="entry name" value="PMEI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101148">
        <property type="entry name" value="Plant invertase/pectin methylesterase inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Pectinesterase inhibitor" evidence="3">
        <location>
            <begin position="7"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI21754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="19505" checksum="D6345A3A86662DC1" modified="2018-12-05" version="1" fragment="single">PTTGNNDDAEYIRSSCNTTLYPDICYTSLSRYANAVQQNPGQLARIAIAVSFSKVHRTASYLSNLTRVADYSGNSRAALALXDCFSNLDDAVDEIRGSLKQMRQLGAAGSGTDSFLFQMSNVQTWMSAALTDEETCTDGFQDVEDCPMKSDVEKRVTKVKKFTSNALALVNGYAKKGMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QD86</accession>
    <name>A0A392QD86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127084">
        <property type="protein sequence ID" value="MCI21842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QD86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12490" checksum="6AB09646D23AB3B0" modified="2018-12-05" version="1" fragment="single">GITNNGGDGGVVIYDDCGGGRVDDDGEKESFGRGVMREDESLRGGSGGVIRDDEGGGGGETHGVEEVEDDLCPVSLAQLARDITFYMQGSGFEPRTPHLFTLRVKFLATRLPDKKNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGI4</accession>
    <name>A0A392QGI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133411">
        <property type="protein sequence ID" value="MCI22974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="5139" checksum="AA9D6B62BC54BE76" modified="2018-12-05" version="1" fragment="single">MEREVEAPQRKEENLKRWLLTLGVEEGRDPSLLELEPMLLMKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGV7</accession>
    <name>A0A392QGV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Callose synthase 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134573">
        <property type="protein sequence ID" value="MCI23179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3779" checksum="C0AE4900DF4797C2" modified="2018-12-05" version="1" fragment="single">MSLIGKDNVRNQRENVVLMIANAQSRLGIPAGTDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QH37</accession>
    <name>A0A392QH37_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010131395">
        <property type="protein sequence ID" value="MCI22605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000294">
        <property type="entry name" value="Serine/threonine-protein kinase OXI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45637">
        <property type="entry name" value="FLIPPASE KINASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="15"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI22605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="19300" checksum="DFE0F28C876921EA" modified="2018-12-05" version="1" fragment="single">MEPAPPSLELDLDNLKALKILGKGAMGTVFLIHNSTAXXXXXXXXXXXXXXXXKTSVHAKLDAERRARWEIQVLSSLSHPFLPSILGTYESPQFLAWALPYCPGGDLNVLRYHQNDRVFSPCVIRFYIAEILCALDHLHSMGIAYRDLKPENVLIQHSGHVTLTDFDLSRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMY6</accession>
    <name>A0A392QMY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Homer protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010146016">
        <property type="protein sequence ID" value="MCI25234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="33"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9353" checksum="7AE0CC7725AD4B2E" modified="2018-12-05" version="1">MVMVEHQSCATCVNASALCAMEQEMKEDDVNAVAEISAELERERQKNAELMERISMLEAQIRERNTENQVTVIXFVHTLIKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QU40</accession>
    <name>A0A392QU40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010162099">
        <property type="protein sequence ID" value="MCI27891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QU40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13668" checksum="336623BD194EEE89" modified="2018-12-05" version="1" fragment="single">ARSVEIIEKRGRDGDLEDVCSRKNPRLDAVGGSASGPHKLTPGHPAEDFVLPHAFGHSPIFYGCTKVVVSDAEKTILGDMRSEAIRSEVVKSSEAVFILLEVVTFLNGRECQYLNERDVAMKKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0E3</accession>
    <name>A0A392R0E3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010174456">
        <property type="protein sequence ID" value="MCI29709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0E3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9179" checksum="DEEB1CDA146BCCBC" modified="2018-12-05" version="1">MPRWCQMNIVQRLSNRWADRLINIQLIHADGINNILSPMNCIVLLDWKTLIHTRANIPAGAANLYILFLYQINFFVGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0M5</accession>
    <name>A0A392R0M5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010175083">
        <property type="protein sequence ID" value="MCI29797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0M5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17563" checksum="A83779F7042389D1" modified="2018-12-05" version="1" fragment="single">NDTLVASLWGNSPHTFSFRPSVGASGGLLTVWDSSEVEVWSTVSHEHVLVCHGRFLRSDEEFIVVNVYAPCDPGAKQGLWDSLSARLQPLVGLRVCVCGDFNAVRRVEERRSSRVGPRPMDHIPFNSFIVDNNLIDLPLSGCKFTWYKGDGLSMSRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1Q0</accession>
    <name>A0A392R1Q0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010180209">
        <property type="protein sequence ID" value="MCI30513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1Q0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF80">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11418" checksum="51ABD88F8D5C7E3E" modified="2018-12-05" version="1" fragment="single">YANCSGQIINASKSTIFCGGIANARLAHIVDIFGFNVGVLPFNYLGVPIFKGKPKARHFTPIADRIKAKLSAWKASLLSIAGRVQLVKSVIQRILFGVVTFLRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4S9</accession>
    <name>A0A392R4S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188359">
        <property type="protein sequence ID" value="MCI31601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6353" checksum="090AEBF4856DA89A" modified="2018-12-05" version="1" fragment="single">RSLSDHQRETTRANIKFQGSKRLAARVVAEREEARNSDAKQKVSGLATRGSERQRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R590</accession>
    <name>A0A392R590_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010185927">
        <property type="protein sequence ID" value="MCI31272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R590"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI31272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5482" checksum="3765ACCD1C7B4406" modified="2018-12-05" version="1" fragment="single">VLQYNHHINGGYERGGYGGGCHYSHGGGGYGGGGSCYGCGESGHFARDCPTSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6T2</accession>
    <name>A0A392R6T2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010191383">
        <property type="protein sequence ID" value="MCI31947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6T2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3500" checksum="D9B96B6ADE3C3835" modified="2018-12-05" version="1" fragment="single">MCLKKKYFEALELVEDGVVHFGDGKLVRFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCL6</accession>
    <name>A0A392RCL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010208727">
        <property type="protein sequence ID" value="MCI33937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8737" checksum="C9B703FA3B4327C3" modified="2018-12-05" version="1" fragment="single">ARLSKVQDCTSHKLPGENSLAISEEKAEEQDNCQRLGANLEKIDLENPSRSVMPSASSSEYESTILKASHACQFAXXXXX</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REH3</accession>
    <name>A0A392REH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010218877">
        <property type="protein sequence ID" value="MCI34971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5122" checksum="A8D898EBC74C8DC9" modified="2018-12-05" version="1" fragment="single">RQQKGQVSKILENEGATNSVSDPQMSGMRKGARPCTPSHKLRDFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REM6</accession>
    <name>A0A392REM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010220034">
        <property type="protein sequence ID" value="MCI35083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13873" checksum="477A258C50DB037D" modified="2018-12-05" version="1" fragment="single">MTTPYRGRGRGHLGQGGRDSNRPPYPELTVPLIGDWTAVNYRSQLAGAQVAGAIKALAPPAKKEDKPSSSTSKEITSYKDVAVNETALEQSLEYFENPVTENIMYVDDEDLSLPNADGWSIRTRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RP51</accession>
    <name>A0A392RP51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010251835">
        <property type="protein sequence ID" value="MCI38089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RP51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="11886" checksum="2AEC19C821A3B854" modified="2018-12-05" version="1" fragment="single">MWDFPVSSSDNTDTSDSDSSSGTSSDCVIISPSSFTGKQKATSRSLVVLDLAIMTMEVSSKFTTPESVACFRGAVKLSSSKDESGVITEPIAGGEFVTTVNTNEPHYFYMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRH0</accession>
    <name>A0A392RRH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010265240">
        <property type="protein sequence ID" value="MCI39238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6876" checksum="6A1F56319550966F" modified="2018-12-05" version="1" fragment="single">QDGDGRSLKFMREKLLLYGMPWSGLIAWDCITSNLKPIQRRWWTPSKHVQQECQSLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTV2</accession>
    <name>A0A392RTV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Long chain acyl-CoA synthetase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010269787">
        <property type="protein sequence ID" value="MCI39632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4649" checksum="1958A9DA85146492" modified="2018-12-05" version="1" fragment="single">MVYESSAKDCLTESCAGCFTAIGDVFSMIGTVGIPMTTIEARLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RX15</accession>
    <name>A0A392RX15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010285482">
        <property type="protein sequence ID" value="MCI40919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RX15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6073" checksum="0A5A2FAD7571FCA3" modified="2018-12-05" version="1">MASNSSTDADIHSVDSDTLLGQLLSPPRSTAAVVSVDCCHRHGHILFVAVRKTNVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXF6</accession>
    <name>A0A392RXF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010290504">
        <property type="protein sequence ID" value="MCI41298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4257" checksum="8869E29BFC7A8F4C" modified="2018-12-05" version="1" fragment="single">YVRVSVGGRRGGLAVAPPVVGMGGRDVRGVQGFSSRYFFAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYD5</accession>
    <name>A0A392RYD5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-protease polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010288604">
        <property type="protein sequence ID" value="MCI41162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="97" mass="11447" checksum="EC68C24255839730" modified="2018-12-05" version="1" fragment="single">MFHQMSQHHAQQRSSKMSQHPAQKKNMKFHKMSQHPAQHYASRYNGYKEPAKKCSYCRGYGHIRSECFKLYGYPQKVKPPRSNKNPERAVETKGTHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S444</accession>
    <name>A0A392S444_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010319863">
        <property type="protein sequence ID" value="MCI43608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S444"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7260" checksum="FDBEE09A5632A268" modified="2018-12-05" version="1" fragment="single">GTTSETVKEKVVKEKVVAEKEKVVVAKEDVVVAEKAKKKDLKRKSTGIKIDEGRSKRRHDKTRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4X5</accession>
    <name>A0A392S4X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010324353">
        <property type="protein sequence ID" value="MCI43973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4X5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6841" checksum="D0E4C4DCD4F38A14" modified="2018-12-05" version="1" fragment="single">YISFEEAEHVESRYVGEGFCFYPLGKVINSDDEVFAMRESCREWSEDIHAPPGERLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S634</accession>
    <name>A0A392S634_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010316202">
        <property type="protein sequence ID" value="MCI43355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S634"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8000" checksum="AECD9390600F8219" modified="2018-12-05" version="1" fragment="single">MESMNVVVDDTGNRKGPDDTPASDIQNDVPVVTKEVESDTEVSSSEQTNAPKKGPSIRVQKNHPIEQVIGNPNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SCE4</accession>
    <name>A0A392SCE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010346309">
        <property type="protein sequence ID" value="MCI45610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SCE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="1828" checksum="270C584B8CC0B6C9" modified="2018-12-05" version="1" fragment="single">MASGSGSVPMGTYGNGAFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SCP6</accession>
    <name>A0A392SCP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010351172">
        <property type="protein sequence ID" value="MCI45974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SCP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051714">
        <property type="entry name" value="Znf_CCHC_NABP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23002">
        <property type="entry name" value="ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="57"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI45974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10650" checksum="9A03142BA8607602" modified="2018-12-05" version="1" fragment="single">NRGRGNASGGRKQGYGSCYKCGEKGHMSYECPRKVDKCYRCGKLGHKTDVCREKMVCFNCGEEGHKSLVCKKPKKVMGKVFALSGENADQVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFM7</accession>
    <name>A0A392SFM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010368982">
        <property type="protein sequence ID" value="MCI47207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10989" checksum="A2119586A31DFF7A" modified="2018-12-05" version="1" fragment="single">KAIGNYQVQGELPKELEITLEEDIYPEKVLGSRVTLQGGLAIPQSLIQWKNKTLDDVTWEDDTFLAGQFPEFSLEDKALFEIGGIDRDVGLDINVKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGL4</accession>
    <name>A0A392SGL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010373800">
        <property type="protein sequence ID" value="MCI47547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="45"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10476" checksum="1870E53AD6459E87" modified="2018-12-05" version="1" fragment="single">STNVVTHILPIVIPTCEFDSSPGAFVAKTPNSIDASTVTSSFSSGNDNQHNNNNPRGNHGKKKIYGGINGGKGGRNDTHNYIGSPSFSGNGGRGHNLPWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHJ5</accession>
    <name>A0A392SHJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aldo-keto reductase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010381786">
        <property type="protein sequence ID" value="MCI48109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050791">
        <property type="entry name" value="Aldo-Keto_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43625">
        <property type="entry name" value="AFLATOXIN B1 ALDEHYDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43625:SF40">
        <property type="entry name" value="ALDO-KETO REDUCTASE YAKC [NADP(+)]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="3">
        <location>
            <begin position="9"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI48109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7076" checksum="00F9CD1FF5C97058" modified="2018-12-05" version="1">MSAFCGPPKPEPDMISLFHHAIQSGVTFLDTSDVYGPHTNELLLGKVPTFSYPFSFSFDNYLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SI58</accession>
    <name>A0A392SI58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010388003">
        <property type="protein sequence ID" value="MCI48551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SI58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5786" checksum="A109B5E700090F2A" modified="2018-12-05" version="1" fragment="single">FSHLRAAQGMMARCAPMLRKLGLLLCQLRAAQDRMARRASQREEKHWSFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIN4</accession>
    <name>A0A392SIN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010390832">
        <property type="protein sequence ID" value="MCI48733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7450" checksum="500C7B6744EF9CB2" modified="2018-12-05" version="1" fragment="single">MTARKETNLGDDFYTFIVDGDPLTYSEAISSPDGPFWKEAINNEIHSIVSNHTWEIVDLPQGAKPIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNN9</accession>
    <name>A0A392SNN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010403966">
        <property type="protein sequence ID" value="MCI49625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10544" checksum="7337B9E7176F3E4F" modified="2018-12-05" version="1" fragment="single">MGEVSETTTTSTMTTKRKKKGRPSLLDLQKRSIKQQQKQHPLPLDPPHSNNNNDDDDDERKLKKQKLLIGLNSHLQNPTTLLPNSHLTGSHQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPQ7</accession>
    <name>A0A392SPQ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010419865">
        <property type="protein sequence ID" value="MCI50659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2719" checksum="038BE388ED0197AA" modified="2018-12-05" version="1" fragment="single">MAVFGGGFLENQHGHFVKDGGTTAGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQF7</accession>
    <name>A0A392SQF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010426917">
        <property type="protein sequence ID" value="MCI51103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9432" checksum="E93077DBE3E2FC08" modified="2018-12-05" version="1" fragment="single">SVGEKSVEVPSSSCSAAHRGSQLSPAQNQNTGAASGCKVEPDAAPAVLPAVVVAVVLLLQPELPVALSLPSERMYDLEVAQCWLSHQCPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRK5</accession>
    <name>A0A392SRK5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Reverse transcriptase RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010419939">
        <property type="protein sequence ID" value="MCI50665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="12"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI50665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5455" checksum="C2134E844ED9F742" modified="2018-12-05" version="1" fragment="single">MQVKLSPPLRRAVVFAFDKFRSYLVGAKVIVYTDHAAIRDFSAKKDAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSD6</accession>
    <name>A0A392SSD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010424648">
        <property type="protein sequence ID" value="MCI50955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4933" checksum="3A065AB7AC143281" modified="2018-12-05" version="1" fragment="single">MDWCLNRHKLDVLFPAQRAHSCCATHSFIAAGQFSFCHLRNAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYJ7</accession>
    <name>A0A392SYJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010464776">
        <property type="protein sequence ID" value="MCI53542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7894" checksum="C4E61F04F1AE2AC6" modified="2018-12-05" version="1" fragment="single">NIPAADKGVNVVQSSSSQTAPATASGTAPSLWDPLFNPMAFIEKELHMVDDVSSFAATSTEELRQLSSRQEQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T048</accession>
    <name>A0A392T048_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010480524">
        <property type="protein sequence ID" value="MCI54511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T048"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8043" checksum="36F731CDCA9FFB62" modified="2018-12-05" version="1" fragment="single">MGSDKVKRKVIKSVLAGIDLTISREHIAKLLMVEDKGKRIADFKHATLYRESIQQVMFKPESLSGKSRSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T213</accession>
    <name>A0A392T213_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010489883">
        <property type="protein sequence ID" value="MCI55059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T213"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8773" checksum="19C94CA82B4C08F0" modified="2018-12-05" version="1" fragment="single">AWQDFVRVDRIAYDACMAQNTAAFKDQNSAYERLMKSEEDVRAAAPTPMFSMDDFGYHEDDQGVFHDFVHPNAPADP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T3T7</accession>
    <name>A0A392T3T7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010485877">
        <property type="protein sequence ID" value="MCI54826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T3T7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9791" checksum="B757C0B4A6790A21" modified="2018-12-05" version="1" fragment="single">MKLSLIRRFLLRHWWRTLAGKMNRFHRSFLGNQERSLSASKISHLLHRSRSRYSSAVVEVREAALTAEEAEAPAIQVSETPNFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6F0</accession>
    <name>A0A392T6F0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010515700">
        <property type="protein sequence ID" value="MCI56648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6F0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8716" checksum="B6F8465B0D27DEC4" modified="2018-12-05" version="1" fragment="single">KNLRLHAVSGSASGLHRLTPEHSAEDFVLPHAFGHSPLFDGHTKVVVFDADKAILEDMGPEVIRSEVAKSSKAVFRLLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6U4</accession>
    <name>A0A392T6U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010509205">
        <property type="protein sequence ID" value="MCI56244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5853" checksum="0FE1CD9FFA7A2F68" modified="2018-12-05" version="1" fragment="single">MRFTHEAEVKLENPSILQQSVRLARGVMPPRIQQNPGSRNATFHAQAEPESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TC40</accession>
    <name>A0A392TC40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010534993">
        <property type="protein sequence ID" value="MCI57780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TC40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9870" checksum="6064169F0146BC58" modified="2018-12-05" version="1" fragment="single">ARERYGEEFLKLTQGGLNVEVYAKKFESLSRFFCFFRDGIDETYMCRRFQGGLKYELQDAVVPLGIRQFQVLVEKCQEIEDMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEZ1</accession>
    <name>A0A392TEZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010565894">
        <property type="protein sequence ID" value="MCI59568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6489" checksum="F006C4DBCCBACF1D" modified="2018-12-05" version="1" fragment="single">ENKSVVEQLAEFNKIIDDLANIDVNLEDDDKAFHLLCALPKSLENLKDSLLYGKEGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFH7</accession>
    <name>A0A392TFH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010558492">
        <property type="protein sequence ID" value="MCI59167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2973" checksum="F2B494097AF03590" modified="2018-12-05" version="1" fragment="single">MSLGRTRVVGDTLADPAEDVSITVEVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFR9</accession>
    <name>A0A392TFR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010569691">
        <property type="protein sequence ID" value="MCI59772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2995" checksum="95BE8B67B3B52AF0" modified="2018-12-05" version="1" fragment="single">PAFQRFAVRTSKNIEDISKKEATRVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRP7</accession>
    <name>A0A392TRP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010645020">
        <property type="protein sequence ID" value="MCI63861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9782" checksum="2AED15A3305514D5" modified="2018-12-05" version="1" fragment="single">EVEVADAIHHARPEDNNPAREAHRKGGDRKKNDKHREPRGPSNLFSTYTPLNASREHILTECHASEFRQGGIKFPKQVPPKPHQDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWY5</accession>
    <name>A0A392TWY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010671548">
        <property type="protein sequence ID" value="MCI65214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5666" checksum="AA10796E13A129AA" modified="2018-12-05" version="1" fragment="single">LSILGMCYLYICFPVGDPCFACHIHGLLPPLDDGAAPVAAGREDGEDLVEYAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYV2</accession>
    <name>A0A392TYV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694109">
        <property type="protein sequence ID" value="MCI66363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="8633" checksum="8CA4B87496784543" modified="2018-12-05" version="1" fragment="single">KNQDEAARISVEIPKKGEGVVAEGDEVDSLAPSSKKKRGTRSNTGCHLLQGGSAKNTSAKGDGAAQEDVRTSTVNLEVPRPVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UG78</accession>
    <name>A0A392UG78_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Envelope-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010817711">
        <property type="protein sequence ID" value="MCI72422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UG78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="8567" checksum="C1A0CEF3F1866104" modified="2018-12-05" version="1" fragment="single">GKIDNNDVVNVDDLESEERSEEKTHAPTIAKRLISQSGKVIASVVSPVKPTKSTKKTVSIGPKKQWSKVVPPSETKKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMH1</accession>
    <name>A0A392UMH1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010853135">
        <property type="protein sequence ID" value="MCI74088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7214" checksum="1BA0AFA696EB06A1" modified="2018-12-05" version="1" fragment="single">MEETLTQFMKMTQGNFEVTQGGFGGNTTDNPRNESCNAIHLRSRKVPSPEVGENSKKRESKKGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUD1</accession>
    <name>A0A392UUD1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010978085">
        <property type="protein sequence ID" value="MCI79638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="54" mass="6116" checksum="B6121682A236F89C" modified="2018-12-05" version="1" fragment="single">MGVILKEKLKGLKLHLKAWHKEEYGGGDDRIAVLIEDIKDLDIRSELVGLSDQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V006</accession>
    <name>A0A392V006_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011019579">
        <property type="protein sequence ID" value="MCI81457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V006"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4055" checksum="5CDE123BFCDACF35" modified="2018-12-05" version="1" fragment="single">MQGNEQVAVDDVWGIGKAIDVKFKGDNVNMFSVLSGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V153</accession>
    <name>A0A392V153_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010988516">
        <property type="protein sequence ID" value="MCI80130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V153"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4776" checksum="A9029E348B6AF765" modified="2018-12-05" version="1">MKRYTVEELVVTSDVEAPALVEDADDKMIETCGIVVGMTTDCPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4P8</accession>
    <name>A0A392V4P8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011033179">
        <property type="protein sequence ID" value="MCI82021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4P8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8377" checksum="14593A1AECE95B11" modified="2018-12-05" version="1" fragment="single">AAARTNAQIVEALATLTNIVARDNQPGREGEMRLERFMKQKPPTFTGGYNPDEAYKWLEELEIIFEAMECSEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7P3</accession>
    <name>A0A392V7P3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein 33</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011067971">
        <property type="protein sequence ID" value="MCI83472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7P3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5673" checksum="B843C768A3A5BCFC" modified="2018-12-05" version="1" fragment="single">MESTPCASRVGSIMYVMVCSRPDLSYAISVVRRFMANPGQVHWQALKWVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9Y1</accession>
    <name>A0A392V9Y1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Dymeclin</fullName>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the dymeclin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011108113">
        <property type="protein sequence ID" value="MCI85138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9Y1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007030">
        <property type="term" value="P:Golgi organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019142">
        <property type="entry name" value="Dymeclin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12895">
        <property type="entry name" value="DYMECLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12895:SF9">
        <property type="entry name" value="DYMECLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09742">
        <property type="entry name" value="Dymeclin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0519">Myristate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI85138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3891" checksum="C7E21CFF7E138D18" modified="2018-12-05" version="1" fragment="single">CLADETAVLLLYSLLQGNSAFLEYVLVRTDMDTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBR2</accession>
    <name>A0A392VBR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011119243">
        <property type="protein sequence ID" value="MCI85587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6171" checksum="BC62BC71719B64A0" modified="2018-12-05" version="1" fragment="single">DAIISHGSDFLDTNQLETDDAIDPNANQLAIVSAQFPEVVQQDIADDTEKVRKRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGD7</accession>
    <name>A0A392VGD7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011143315">
        <property type="protein sequence ID" value="MCI86533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGD7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7985" checksum="B2BD40259C126B0D" modified="2018-12-05" version="1" fragment="single">AGQMKKLMNEEALVFMIFASLITEEKPEAEELPVVKEFLDVFPDDFSDQPPEREVEFAIDVAPGTRPISMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGS6</accession>
    <name>A0A392VGS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011119306">
        <property type="protein sequence ID" value="MCI85590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="15" mass="1687" checksum="BDE9380423A126AF" modified="2018-12-05" version="1" fragment="single">MSIWNAEMMDVTTGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIE6</accession>
    <name>A0A392VIE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011159902">
        <property type="protein sequence ID" value="MCI87192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2751" checksum="0F049E2805C48F6F" modified="2018-12-05" version="1" fragment="single">MGADGEVMEESKEADVSTGEATHRIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJS2</accession>
    <name>A0A392VJS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011160622">
        <property type="protein sequence ID" value="MCI87221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3214" checksum="D874C3EFEAC2B339" modified="2018-12-05" version="1" fragment="single">MTGSKCKTGRYTARNRLNASAQNFPKKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSC8</accession>
    <name>A0A392VSC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011242886">
        <property type="protein sequence ID" value="MCI90372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6320" checksum="19323581B2464735" modified="2018-12-05" version="1" fragment="single">MTSAAARVRAAKNAKKKTSETANAGTPSGQASPSHVVETAREKRPHEEEPREAVPRKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW28</accession>
    <name>A0A392VW28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011257302">
        <property type="protein sequence ID" value="MCI90895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6060" checksum="BF98996B8573AD07" modified="2018-12-05" version="1" fragment="single">DASSSGVQAECENFGRMQDMVGDALGVNLSYEGGGEEEIIPNEKAQKFFDPTKYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZ83</accession>
    <name>A0A392VZ83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011331097">
        <property type="protein sequence ID" value="MCI93506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZ83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3986" checksum="BBA3AA65C3AEB173" modified="2018-12-05" version="1" fragment="single">MWVKINLMAVWSIDVLSLMEEVDPDDVPLDQAIAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4Q3</accession>
    <name>A0A392W4Q3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011349095">
        <property type="protein sequence ID" value="MCI94171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4Q3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4660" checksum="EB3A0F9CAB8AAB77" modified="2018-12-05" version="1" fragment="single">MRIEANARRARARCARARELGELVRDKRRSMRIHRRIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6S3</accession>
    <name>A0A392W6S3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011354880">
        <property type="protein sequence ID" value="MCI94390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6S3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3615" checksum="4DE451B26527DABB" modified="2018-12-05" version="1" fragment="single">MLKKVLGKGKKTHPPREDEPVRKKRSTRDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9T7</accession>
    <name>A0A392W9T7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011388189">
        <property type="protein sequence ID" value="MCI95480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9T7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3470" checksum="91E1EFE9F945E590" modified="2018-12-05" version="1" fragment="single">SKKQRRSVEGGGHSADRRRSGVVSAAQWFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW10</accession>
    <name>A0A392MW10_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021051">
        <property type="protein sequence ID" value="MCH91730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="185" mass="19658" checksum="D240DA5643B77EAD" modified="2018-12-05" version="1" fragment="single">MVVVGGGGGDEVVSRCVVGVVRDVVGALVAFGVFVSQGCGCSVWVLFKLMVASLSLFSDLVWLCAGLGVLGLVLMWRCSDSAPPGSGLGDDGWCCGEVVVVGGDEVSKSVEICRSQCIWFDLFRVGVDRFILGQCFVSLALGCVFFCHYWPRRVASVVTFVRSAIRLMELVLDSDGPIAFDSRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4M6</accession>
    <name>A0A392N4M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024941">
        <property type="protein sequence ID" value="MCH93444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="23030" checksum="A03AE81401099047" modified="2018-12-05" version="1" fragment="single">FRISPIKESXXXXNQASEETIPPIPPVSNPELAKVCNNIIGKLKNLHKLRYSFVDMDLYLKSWYTLKIDINKDLDRIQNADFNELVDFQHNTREWVTGVNKEFEGVQLKKKGKLSLTDQNQNIIKTKIWKENIGLLESELCMHQKFNLEPGTLFVKKNFVENPKFEAFKAEVKEELSSQKKDIQELMTNQKSMAAKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH35</accession>
    <name>A0A392NH35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">High mobility group B protein 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038546">
        <property type="protein sequence ID" value="MCH98791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.60">
        <property type="entry name" value="ARID DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001606">
        <property type="entry name" value="ARID_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036431">
        <property type="entry name" value="ARID_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46691:SF6">
        <property type="entry name" value="HIGH MOBILITY GROUP B PROTEIN 10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46691">
        <property type="entry name" value="HIGH MOBILITY GROUP B PROTEIN 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01388">
        <property type="entry name" value="ARID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01014">
        <property type="entry name" value="ARID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00501">
        <property type="entry name" value="BRIGHT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46774">
        <property type="entry name" value="ARID-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51011">
        <property type="entry name" value="ARID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ARID" evidence="2">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="86"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="103"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH98791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12578" checksum="5E7000E1420481BA" modified="2018-12-05" version="1">MVPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVVMSFKFRETITSASFMVRKYYLSLLYHFEQAYYLCKQVPPSTPDALSGNLANSSTTNREGAAINDSPVQGKSMNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMM8</accession>
    <name>A0A392NMM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045337">
        <property type="protein sequence ID" value="MCI01138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF84">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="276" mass="31731" checksum="37A200C4CBE9907E" modified="2018-12-05" version="1" fragment="single">HAFSYRPSVGASRGLLILWDSSEVEVWSSKSREHVLWCHGCFIKSGEEFSVANVYAPCDPGAKQDLWDSFSVRIQALGRLRVCICGDFNVVRSIEDNTLIDLPLCGRKXRRSVRGGHRPLDHIPFNRFIDDNTLIDLPLCGRKYTWFKGDELSMSRLDRFLLSREWCLTLPNCKKVARMRGLSDHCPLVLTANEEDWGPRPSRMLKCWKEVPGYNLFVRDKWNSFQVDGWGGFVLKEKLKMIKLALKDWHIAHTQSLPSRIESLKDRLATLDEKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPD6</accession>
    <name>A0A392NPD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Inter-alpha-trypsin inhibitor heavy chain H3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045201">
        <property type="protein sequence ID" value="MCI01090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46503">
        <property type="entry name" value="INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46503:SF17">
        <property type="entry name" value="INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="15503" checksum="D38AEAAE87B0185F" modified="2018-12-05" version="1" fragment="single">GSILGVEVSVHRKSYSTQLVDMEFKTGGKENVPTQEGGFLKPNVFTLTIPQIDGGSNLSIKLNWSQKIICGNDVFSLNVPFNFPDFVNPAGKRMSKKEKIQINVNAATGSEVTCKTSSHPMKMCDNVVLFRNFTGSKAQCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUK0</accession>
    <name>A0A392NUK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter G family member 28-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051178">
        <property type="protein sequence ID" value="MCI03094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043926">
        <property type="entry name" value="ABCG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050352">
        <property type="entry name" value="ABCG_transporters"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48041:SF91">
        <property type="entry name" value="ABC TRANSPORTER G FAMILY MEMBER 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19055">
        <property type="entry name" value="ABC2_membrane_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="144"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter family G" evidence="7">
        <location>
            <begin position="1"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF19055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI03094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="192" mass="21444" checksum="ACC08086C08BB2D8" modified="2018-12-05" version="1" fragment="single">VGKQRLREARTQAVDFLILLLAGVCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSFTDNYFVLLCLVYCVTGIAYVLAIFLEPGPAQLWSVLLPVVLTLLATYENEEDSTYVAFLSDLCYTKWALEAFVISNAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1D1</accession>
    <name>A0A392P1D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ASCH domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058938">
        <property type="protein sequence ID" value="MCI05524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11572" checksum="701066D2EF1A43A4" modified="2018-12-05" version="1" fragment="single">NLRSHHRTTEKDNIPSTELNEKFDDSGISSDHEAKGSSKVNEGSSWHHHPPRADRRQHFQPSTKGVLVYRPKINCDKNEENSTHHQSSSAEADLRQNSQPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P582</accession>
    <name>A0A392P582_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Globulin-1 S allele-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064435">
        <property type="protein sequence ID" value="MCI07167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P582"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02245">
        <property type="entry name" value="cupin_7S_vicilin-like_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006045">
        <property type="entry name" value="Cupin_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050253">
        <property type="entry name" value="Seed_Storage-Functional"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31189:SF7">
        <property type="entry name" value="OS03G0197300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31189">
        <property type="entry name" value="OS03G0336100 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00190">
        <property type="entry name" value="Cupin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00835">
        <property type="entry name" value="Cupin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin type-1" evidence="1">
        <location>
            <begin position="58"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="27764" checksum="5B8DE730107E61AB" modified="2018-12-05" version="1" fragment="single">IFKVPEDLIEAITNKTETPAIVHAVPEKKQHNYVLELEASFLEYFTGIQSNSKKLRTYNIFDNDPDFKNCYGWTSTVTKKQLKRLKSHNIGVFMVNLTRGSMLGPHWNPLATEVAVVLEGEGMVRVVCGSNNDDECKNQRFRVKQGDVFVVSRFHPMAQISFDNEPLVFMGFSTAAKKNHPQFLAGEGSVLQILDRQIVATSLGVSKTTIDKLLEKPDDSIIFECSSCAEEEEKLMEEEKEKERE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC51</accession>
    <name>A0A392PC51_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Calmodulin-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073514">
        <property type="protein sequence ID" value="MCI09683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012442">
        <property type="entry name" value="DUF1645_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33095">
        <property type="entry name" value="OS07G0619500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33095:SF81">
        <property type="entry name" value="OS07G0619500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07816">
        <property type="entry name" value="DUF1645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="207"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="143"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="234"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="268" mass="30002" checksum="F3E8C6F097287EAF" modified="2018-12-05" version="1" fragment="single">SSSPYITAPSSPQRFANNFFFSAPTSPSRVSPIFPAQSSDPEPNHSHNNNYSFGNDDDFEFDFSGNLQRDSLSAADELFHGGKIRPLKPPQRFHSGDIPISPRTQKKKTGNDHDPERDLDQFEAAIEETLRNKEEKRGRERVLSSGRKGSRSLSPLRVSDIVESSEDVSVSVSSSTSNMKSFLSFTKGYRKWRIRDFLLFRSASEGRADEKDPLRKYTALSKKSAAAAEDDVRNSSFRSTESSGSFSRRRGPVSAHELHYTLNRAATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDE7</accession>
    <name>A0A392PDE7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Endomembrane system</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 8">Membrane</location>
            <topology evidence="1 8">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the methyltransferase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="8"/>
    <dbReference type="EMBL" id="LXQA010072872">
        <property type="protein sequence ID" value="MCI09499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004159">
        <property type="entry name" value="Put_SAM_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10108:SF968">
        <property type="entry name" value="METHYLTRANSFERASE PMT19-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10108">
        <property type="entry name" value="SAM-DEPENDENT METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03141">
        <property type="entry name" value="Methyltransf_29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="3 8 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4 8 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00037847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI09499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10492" checksum="31D901FE5AD15FB9" modified="2018-12-05" version="1" fragment="single">TLSSPKFCSSSDPDAGCEDSRTWKKRVSYYEAMLKSFSSGRYRNVMDMNAGYGGFAAAMVKYPVWVMNVVPFDAKSNNLGVIYERGLIGTYMDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIC0</accession>
    <name>A0A392PIC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CHD3-type chromatin-remodeling factor PICKLE-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079969">
        <property type="protein sequence ID" value="MCI11387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="92"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12925" checksum="FD7A7F24B8783A8C" modified="2018-12-05" version="1" fragment="single">MVFVEEDDLAGLEDVSSDEDDSYEAELTDGDSNSTGTTTSRRPYKKKARSMYSHLSEERQHDVMDDHLGKSRSRCLSPTHPSKRSFSWSPVRASSFRASSRSNRRRSYSRSASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJJ4</accession>
    <name>A0A392PJJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative WRKY transcription factor 53-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080296">
        <property type="protein sequence ID" value="MCI11476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="97"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14599" checksum="7D315C9D2CB93371" modified="2018-12-05" version="1">MEDSKNLIQELLQGMELARQLRIYLNVSSSSSSNETRELLIEKIISTFEKALEMVNHKGHVNVGESSQQQQQQQQQQQQQQQQQQQHTSGTVAIRMLDSPPLSSSPRSEDSDRDHNTPRKRYIDFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKR5</accession>
    <name>A0A392PKR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum lumen</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084034">
        <property type="protein sequence ID" value="MCI12404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005788">
        <property type="term" value="C:endoplasmic reticulum lumen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000545">
        <property type="entry name" value="Endoplasmic reticulum chaperone BiP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.640.10:FF:000002">
        <property type="entry name" value="Heat shock 70 kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000172">
        <property type="entry name" value="Heat shock 70 kDa protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.30.30:FF:000005">
        <property type="entry name" value="Heat shock protein ssb1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="HEAT SHOCK PROTEIN 70KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00301">
        <property type="entry name" value="HEATSHOCK70"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI12404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="28258" checksum="44F274302C7CEADF" modified="2018-12-05" version="1" fragment="single">MMLWPFKVIGENDDKPMIVVNYKGQEKKFCAEEISSMVLTKMREVAEKFXMSPVXNAVITVPAYFNDSQRKATIDAGTIAGLNVIRIMNEPTAAALAYGLDKRTNCDGERNIFIFDLGGGTFDVSLLTIEDEIFHVKATAGNTHLGGEDFDNRMVNYFAQEFKKKNKVDIIGNSRALRRLRTACERAKKTLSFSSFTTIEVDSLFQGIDFFTSITRAKFEEINMDLFNECLKTVESCLIDAKMDKSSIHDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM95</accession>
    <name>A0A392PM95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tryptophan synthase beta chain 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087331">
        <property type="protein sequence ID" value="MCI13213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF3">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI13213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6228" checksum="0350D17AC5DC90B9" modified="2018-12-05" version="1" fragment="single">FKRVSQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTAIKYLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMC7</accession>
    <name>A0A392PMC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ETHYLENE INSENSITIVE 3-like 3 protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EIN3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086186">
        <property type="protein sequence ID" value="MCI12932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009873">
        <property type="term" value="P:ethylene-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.3180.10:FF:000001">
        <property type="entry name" value="Ethylene insensitive 3-like 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3180.10">
        <property type="entry name" value="DNA-binding domain of EIN3-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006957">
        <property type="entry name" value="EIN3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047091">
        <property type="entry name" value="EIN3-like_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023278">
        <property type="entry name" value="Ethylene_insens-like_DNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33305">
        <property type="entry name" value="ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33305:SF30">
        <property type="entry name" value="ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04873">
        <property type="entry name" value="EIN3_DNA-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116768">
        <property type="entry name" value="DNA-binding domain of EIN3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0936">Ethylene signaling pathway</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ethylene insensitive 3-like DNA-binding" evidence="5">
        <location>
            <begin position="1"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI12932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="213" mass="24208" checksum="2213CE2E32EBC32F" modified="2018-12-05" version="1" fragment="single">MSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDRNGPAAIAKYEAECLAMIEADNNRNGNPQSMLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWLHLNLPHGQGPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESSIWLGVLSREEALIRQPSSDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMI2</accession>
    <name>A0A392PMI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thioredoxin reductase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085041">
        <property type="protein sequence ID" value="MCI12650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097237">
        <property type="term" value="P:cellular response to toxic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039648">
        <property type="entry name" value="DHPH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050097">
        <property type="entry name" value="Ferredoxin-NADP_redctase_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48105">
        <property type="entry name" value="THIOREDOXIN REDUCTASE 1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00070">
        <property type="entry name" value="Pyr_redox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00469">
        <property type="entry name" value="PNDRDTASEII"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51971">
        <property type="entry name" value="Nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="5">
        <location>
            <begin position="10"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Pyridine nucleotide-disulphide oxidoreductase N-terminal" evidence="4">
        <location>
            <begin position="162"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI12650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="22670" checksum="5AC3C3EDB93ACD22" modified="2018-12-05" version="1" fragment="single">MADIKIQKTKLCIIGSGPSAHTAAVYAARAELKPVLFEGWMANDIAPGGQLTTTTDVENFPGFPDGILGGELMERCRQQSVRFGTEIFTETVSKVDFSSRPFRVFTDSRTVEADSVIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDTFRASKIMQSKALSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNK6</accession>
    <name>A0A392PNK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089162">
        <property type="protein sequence ID" value="MCI13668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="16" mass="1967" checksum="46BE2607C6DB5690" modified="2018-12-05" version="1" fragment="single">MDDDGDMAEMYFRENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PS52</accession>
    <name>A0A392PS52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">WD repeat-containing protein 44-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092604">
        <property type="protein sequence ID" value="MCI14477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PS52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040324">
        <property type="entry name" value="WDR44/Dgr2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14221:SF57">
        <property type="entry name" value="TRANSDUCIN_WD40 REPEAT-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14221">
        <property type="entry name" value="WD REPEAT DOMAIN 44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="104"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="43"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI14477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="25565" checksum="324A6A4C83748DF8" modified="2018-12-05" version="1" fragment="single">NNDWLVVSDESEKTAKVSSTYQREIGKGSEETGVFNSWKTRAKKAWLRKLNSMKSKMDGLQGEFDNKKHEGGVPFSGCRIQRVKVRQCKKQRKELSALYIGQDIKAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVVEDERHNEIDIPEVDTSCIYFTVNDLSELTPLFTDKDKIRNVKSLKKTSDSACVIFPPKVFRLSEKPLHEFHGHKGEILDLSWSNNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PU92</accession>
    <name>A0A392PU92_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094101">
        <property type="protein sequence ID" value="MCI14876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="198" mass="23827" checksum="6CA033BD2EB309C2" modified="2018-12-05" version="1" fragment="single">STMSGNRMGRGRSRRNVDEEPAEFEGRMRNMNSVEPDNENPWAWMAEQQQLSYQQQRIHHQQLMMVMRQHQVIAQQQLXVXQLVQEXREQXLEDRSAQAFQEFWERKPPVFRGNVSPDNAREWLSTVENILRTIPCTDDEKVLFATYLLKEEAEYWWEETKQMLEYNIPRVWEHFRTLFLEKHCPELGDGRNEQARSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVD0</accession>
    <name>A0A392PVD0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Hexosyltransferase</fullName>
            <ecNumber evidence="7">2.4.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism; pectin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the glycosyltransferase 8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.-" evidence="7"/>
    <dbReference type="EMBL" id="LXQA010099217">
        <property type="protein sequence ID" value="MCI16058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002495">
        <property type="entry name" value="Glyco_trans_8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050748">
        <property type="entry name" value="Glycosyltrans_8_dom-fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13778:SF40">
        <property type="entry name" value="GALACTURONOSYLTRANSFERASE-LIKE 9-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13778">
        <property type="entry name" value="GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01501">
        <property type="entry name" value="Glyco_transf_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI16058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14403" checksum="D05B3F02C446350C" modified="2018-12-05" version="1">MELQKKKRIYELGSLPPFLLVFGGNVEAIDHRWNQHGLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDEKKACPLDSLWEPYDLYKPRNNHLMVHHGGDGKNQEIDQPWSFSSSILVGYAHDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW60</accession>
    <name>A0A392PW60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097759">
        <property type="protein sequence ID" value="MCI15739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PW60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3408" checksum="1478F29042C4481B" modified="2018-12-05" version="1" fragment="single">FSDTVAANGHGAAFGSRKGGGPLQVFIHSDECSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXT1</accession>
    <name>A0A392PXT1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phospholipase A1</fullName>
            <ecNumber evidence="2">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Acylhydrolase that catalyzes the hydrolysis of phospholipids at the sn-1 position.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AB hydrolase superfamily. Lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010097860">
        <property type="protein sequence ID" value="MCI15765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010119150">
        <property type="protein sequence ID" value="MCI20284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008970">
        <property type="term" value="F:phospholipase A1 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033556">
        <property type="entry name" value="PLA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31828:SF10">
        <property type="entry name" value="PHOSPHOLIPASE A1-IIDELTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31828">
        <property type="entry name" value="PHOSPHOLIPASE A1-IIGAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU367093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI15765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9683" checksum="A077C58926F7EE56" modified="2018-12-05" version="1" fragment="single">YHGRNSGYEATTNRDIALVNKACDFVKEEHSVPPNWRQDLNRNMVKTEDGRWVLAPRQQVFDTHHEEDIEPYLEQIGISSSNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q050</accession>
    <name>A0A392Q050_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">AP2-like ethylene-responsive transcription factor AIL6</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107013">
        <property type="protein sequence ID" value="MCI17783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q050"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32467">
        <property type="entry name" value="AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32467:SF101">
        <property type="entry name" value="AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="6">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI17783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="18379" checksum="9C7B012424E68773" modified="2018-12-05" version="1" fragment="single">MLTATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNIQQNNAEQYAACLINSNKSSNINFSTIPHQLPAALSTVPYGMVPYDSTPSAYYHHTLFQHFNSDTNDGAAESVVNSTNATNAGLNAMPPTSAAEFYLWPNQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q168</accession>
    <name>A0A392Q168_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Granule-bound starch synthase 2 chloroplastic/amyloplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010108788">
        <property type="protein sequence ID" value="MCI18153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q168"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45825">
        <property type="entry name" value="GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45825:SF2">
        <property type="entry name" value="STARCH SYNTHASE 2, CHLOROPLASTIC_AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13636" checksum="962A6E28C6E377FD" modified="2018-12-05" version="1">MAHRITAGADILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFNPFDESGLGWTFDRAEANKLMAALWNCISTYREYKKSWEGIQQRGMSQDLSWDNAAQQYEEVLVAAKYQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5A4</accession>
    <name>A0A392Q5A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ubiquitin-conjugating enzyme E2 25-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115126">
        <property type="protein sequence ID" value="MCI19511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10219" checksum="BD199C8CF9D46367" modified="2018-12-05" version="1" fragment="single">DLVILGEEVGESNKGMAIEAIHQVVNASDNTVCQLSVENFGQIIVIESSNGYPMVSHNSISVDGHGSNMLCDDGDDSKSLVIFDEEHIVIVNFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6T2</accession>
    <name>A0A392Q6T2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Poly(RC)-binding protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115637">
        <property type="protein sequence ID" value="MCI19612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6T2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="K Homology" evidence="2">
        <location>
            <begin position="43"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI19612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8359" checksum="716E939072532276" modified="2018-12-05" version="1" fragment="single">KDEPGSSLPPAVDGLLRAHKRLIDGLESDFTHAPSGVAGKISTKFLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAGSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKV3</accession>
    <name>A0A392QKV3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010139991">
        <property type="protein sequence ID" value="MCI24176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKV3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8423" checksum="AE7A5EF04437096D" modified="2018-12-05" version="1" fragment="single">MENQFLYCFPGVQVYPVPLFPREILGEAQPVQEPTPDKSEPSTKPEKKKKKKSHKKKKSDEDKTPVDTSAPKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRC1</accession>
    <name>A0A392QRC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153763">
        <property type="protein sequence ID" value="MCI26519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6828" checksum="8582B842353E0D62" modified="2018-12-05" version="1" fragment="single">ELVSKMDDRHLVEVDDGLMEIPKIKMWFDEKDVLFGQAKNTIDFVGVGELWKLGGRSFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSG3</accession>
    <name>A0A392QSG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154032">
        <property type="protein sequence ID" value="MCI26560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45763:SF28">
        <property type="entry name" value="ALPHA_BETA-HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45763">
        <property type="entry name" value="HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9953" checksum="77D1AC2952314DED" modified="2018-12-05" version="1" fragment="single">MIAPTINYEWPSLPKSLVKDDYRKRLIKLAMWLARYSPRLLHWWVRQKWLPSNSVIEKNPAFFNKRDIEILERIPGFPMLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QTY1</accession>
    <name>A0A392QTY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010161152">
        <property type="protein sequence ID" value="MCI27748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1556" checksum="DD6FBEB0FC3750C9" modified="2018-12-05" version="1" fragment="single">MSPSSVFFPDDLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUH7</accession>
    <name>A0A392QUH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative metal-nicotianamine transporter YSL7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YSL (TC 2.A.67.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010159805">
        <property type="protein sequence ID" value="MCI27522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035673">
        <property type="term" value="F:oligopeptide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004813">
        <property type="entry name" value="OPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045035">
        <property type="entry name" value="YSL-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31645:SF22">
        <property type="entry name" value="METAL-NICOTIANAMINE TRANSPORTER YSL7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31645">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03169">
        <property type="entry name" value="OPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI27522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12891" checksum="20DFE59424143E75" modified="2018-12-05" version="1" fragment="single">CCLFFAGAIIINFVRDLAGNKYAKFIPVPMAMAIPFYIGSNFAIDMCVGSLILFVWQKIDRVKADAFGTAXXXXXXXXXXXXXXXXXXLALGGVQPPICMKFLSRATNAKVDAFLMES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX25</accession>
    <name>A0A392QX25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010161410">
        <property type="protein sequence ID" value="MCI27795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11724" checksum="FBFB11AA33B27A10" modified="2018-12-05" version="1">MIRYETQKQKTLKLRKTSNAPSLLRRSLVGNAAALPHRRTIFFFSAAIPLETIKIRKRLCSEDAIRTRLDSEAAIQIGFLKAQTQSCFIRSAAASIVPGSDSFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R036</accession>
    <name>A0A392R036_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoinositide phospholipase C</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172856">
        <property type="protein sequence ID" value="MCI29474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R036"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004435">
        <property type="term" value="F:phosphatidylinositol-4,5-bisphosphate phospholipase C activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048015">
        <property type="term" value="P:phosphatidylinositol-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051209">
        <property type="term" value="P:release of sequestered calcium ion into cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00275">
        <property type="entry name" value="C2_PLC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001192">
        <property type="entry name" value="PI-PLC_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10336:SF154">
        <property type="entry name" value="PHOSPHOINOSITIDE PHOSPHOLIPASE C 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10336">
        <property type="entry name" value="PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11472" checksum="6403EC600A7A50E2" modified="2018-12-05" version="1">MQVGIAGVPFDTVMKKTKSIEDSWLPSWNEVFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSRKGDKYNNVKLLMRFEFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R255</accession>
    <name>A0A392R255_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon TF2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010177490">
        <property type="protein sequence ID" value="MCI30162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF26">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="5"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18351" checksum="0BD599E30B9BCD5B" modified="2018-12-05" version="1" fragment="single">PAGLLQPLPIPDQVWEDVAMDFITGLPNSHGFTVIMVVIDRLTKYSHFMAQKTDYTSKTVADTFMNQVVKLHGIPKSIVSDRDKVFTSXFWQNLFKLQGTSLAMSTAYHPQTDGQSEALNKCLEMYLRCFTFENPKGWYKLLPMAEYWYNTAFHTSAGMTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6L1</accession>
    <name>A0A392R6L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010189513">
        <property type="protein sequence ID" value="MCI31722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6L1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5234" checksum="40F93CFAE8126872" modified="2018-12-05" version="1" fragment="single">QQKQERFLPDFTEQRPYEMRPRAADVFRRIVHSKSIPEAASTCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8X8</accession>
    <name>A0A392R8X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194348">
        <property type="protein sequence ID" value="MCI32306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF11">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13764" checksum="FBB9FE0FF0EEF205" modified="2018-12-05" version="1" fragment="single">RREDGRCVGAKTRICSGTHDAAMAEATGILEALYFVEQNILSNNMIDQLDAANIVHALNHQKFPITNWGKIARTCSRVCTRLNSVCTRLNSVSVSWVNRKGNQAAHALARWTLIGPGPLPFLCVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R9I6</accession>
    <name>A0A392R9I6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010199931">
        <property type="protein sequence ID" value="MCI32929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R9I6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4629" checksum="6F479CA5430EEE9C" modified="2018-12-05" version="1" fragment="single">PFCFLSEEELDEETVVNCDGDDREALGALCCMFVLNLFPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RDE9</accession>
    <name>A0A392RDE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010215430">
        <property type="protein sequence ID" value="MCI34611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RDE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6915" checksum="E905537B26E77AC6" modified="2018-12-05" version="1" fragment="single">SGVVEDFGRYHYELEQTLNEFLEWSEVDNVEGFRRKGGTYGGFAKHFGKAVSISSRRAGQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RI94</accession>
    <name>A0A392RI94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010224081">
        <property type="protein sequence ID" value="MCI35510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RI94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7378" checksum="CD206E3F9E346FAA" modified="2018-12-05" version="1" fragment="single">DGQYSEYELRMTAYNNNKAVMTDYDYASEQAQTGQDFEDDIIDLLNRALNPMFFRPGGSSSQVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJV1</accession>
    <name>A0A392RJV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010229799">
        <property type="protein sequence ID" value="MCI36040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="23"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8610" checksum="1B4F80D61C9A4EF2" modified="2018-12-05" version="1">MISVQKSPEDKGQTSAYEHDPLLLLVQEQLAALKDEQEKIKEDVKNLTEGEEQVIKTQEDIQSKLNAILAHLSRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKV7</accession>
    <name>A0A392RKV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010242463">
        <property type="protein sequence ID" value="MCI37248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="63"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="7"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI37248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13073" checksum="5426E75B7A5A6FAA" modified="2018-12-05" version="1" fragment="single">ANYYKAANEKRGRDFARGKPYGRGGKKPDEGGSSGVKGGVDRSCFKCGLSGHRFFECPKKDLKCFKCGDPNHKTDQCPKGVVCFNCKEASHKSNVSKKPRAAGGKVFALDGGDVEVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RLJ1</accession>
    <name>A0A392RLJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010241237">
        <property type="protein sequence ID" value="MCI37147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RLJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10749" checksum="8E651796C4B563B9" modified="2018-12-05" version="1" fragment="single">WTRDADHLNVVKNSWSSKRGDTNQKLQSTLKDLHSWGDKRFGVVPKRIKALQRELLQLNEQNGSQNLDSQIRNTEKELDDILECEEMWWAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPE8</accession>
    <name>A0A392RPE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ty3/Gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010256545">
        <property type="protein sequence ID" value="MCI38493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12726" checksum="7C5FFCF4DF3B9CDB" modified="2018-12-05" version="1" fragment="single">MRLEGQIFGASVLVLIDSGATHNFISPTVVEALGLSLTHSTPLSVRLGDGHRIMTSGYCDNIVLHVGDMIFTIQAHVLGIGDVDLILGVVWLETLGKVTMDWHEMSMAFEYGGKSVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU43</accession>
    <name>A0A392RU43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010276672">
        <property type="protein sequence ID" value="MCI40158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7222" checksum="DDBA685D360C043E" modified="2018-12-05" version="1">MAPKRTRTTATSSSSQNYHCFLDAAKKEHYKIIQRKGVVQERSINFPSITSFPRMQQITEGYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU46</accession>
    <name>A0A392RU46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010263855">
        <property type="protein sequence ID" value="MCI39125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7742" checksum="8E5A563CB31603CC" modified="2018-12-05" version="1" fragment="single">MSMALYRTLGLDITWAAYGQHRDARPLQDVCFYSCRLRCRHFIALHLPERVFRQFGFTQTIPRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXJ2</accession>
    <name>A0A392RXJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278007">
        <property type="protein sequence ID" value="MCI40296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5693" checksum="2B82D0314A8CF7D8" modified="2018-12-05" version="1" fragment="single">GWRMWGFAGMGMEKENFPRWGMGTEMGSILDGGELNGKVLPHSRPVLLTSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYB8</accession>
    <name>A0A392RYB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010294272">
        <property type="protein sequence ID" value="MCI41608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4973" checksum="C804F464210B2628" modified="2018-12-05" version="1" fragment="single">MTAAAVGQALLRRYDIQRRFWESVGITAASMVASVALIFAAVSNCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S018</accession>
    <name>A0A392S018_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Homeodomain transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010294922">
        <property type="protein sequence ID" value="MCI41674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S018"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8354" checksum="AD4370334F3972C1" modified="2018-12-05" version="1" fragment="single">SGGNDDALQKNPFVDVTLDIQSGANQVTPIDGPLVPSDRRVIHEEELSRLQRKRKRLECNGNLKCKRKELEKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3A1</accession>
    <name>A0A392S3A1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">L-type lectin-domain containing receptor kinase VIII.1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010309978">
        <property type="protein sequence ID" value="MCI42857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3A1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0430">Lectin</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI42857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6412" checksum="97703F674804265B" modified="2018-12-05" version="1" fragment="single">MNTTANSARSPPPSMAPSMNSTNEERKESKKSCHNGLCKQGLGAVAGVVTAGAFVLALFAGSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5A9</accession>
    <name>A0A392S5A9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010325918">
        <property type="protein sequence ID" value="MCI44081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="57" mass="6404" checksum="5ABC8B4AA9A63405" modified="2018-12-05" version="1" fragment="single">MALEKPPKLETYDGTIDPDEHVEHIDTVLDYYQAPGPIKCKLSVLTLKGAVMTWFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5E2</accession>
    <name>A0A392S5E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010312901">
        <property type="protein sequence ID" value="MCI43096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10247" checksum="FA35E80B3BF4EA62" modified="2018-12-05" version="1" fragment="single">MSDEFAYWNLMATKVGFKPIVADGYGDIELNSEFVADISEREGPEGEGVSKKRHDRENGNGSPASKKSRGNISDPREVAVGSTGVVSVRIPPPASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6A9</accession>
    <name>A0A392S6A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010329724">
        <property type="protein sequence ID" value="MCI44368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10168" checksum="5FD285DCC9C98318" modified="2018-12-05" version="1" fragment="single">MYFPTLWRKWIKECVCTATASILVNGSPTEEFPLERGLRQGDSLSPFLFLLASKGLHLLMEAMVERNLFTGYSIGGTDPISVSHLQFADDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAJ8</accession>
    <name>A0A392SAJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Maturase K</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010344935">
        <property type="protein sequence ID" value="MCI45492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12025" checksum="6321E9FF085C25EC" modified="2018-12-05" version="1" fragment="single">ALQHLKKALSEPPVLSRPDDEEVLYLYLSVASEAVSAALVCETPEGQKPVYFTSKALKGPELIYQQIEKIALALINAARRLRHYFLAHTIVVRTDQPIKSLLGRPDMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SE41</accession>
    <name>A0A392SE41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010358044">
        <property type="protein sequence ID" value="MCI46474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SE41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6102" checksum="29FBC264AB374276" modified="2018-12-05" version="1" fragment="single">GYMARCACQGMITVKSSGSCASRSLVWRGAPFDSIETGKSSGSCALRRMDLCGAPLRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFT4</accession>
    <name>A0A392SFT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010363255">
        <property type="protein sequence ID" value="MCI46820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4918" checksum="FE4BA65BBDEC0F78" modified="2018-12-05" version="1" fragment="single">MVVHEEDDEETDEEPLQCKRKRNETDKEQPEPKRMSTEAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SM95</accession>
    <name>A0A392SM95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010395271">
        <property type="protein sequence ID" value="MCI49050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SM95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11441" checksum="CFCB70D31BC7EA70" modified="2018-12-05" version="1" fragment="single">TPVGNNQEQIPVDNTGDPRDGREISLSSDEDVQVLTARRTEKRPQSTQEIPVDRAQPPAPITREDIANLITDLRSTNETLQQHGLRITALEESLRSKKSRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SP01</accession>
    <name>A0A392SP01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010406086">
        <property type="protein sequence ID" value="MCI49745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SP01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="10984" checksum="D6F32416FA0D01AF" modified="2018-12-05" version="1" fragment="single">ESMKTISEEQLQAFILKARERKNRPQATAVPDPLSQLVVEDPTSKGSKRKNQDEAARISIEIPKKGEDVTSEGDETSALVPPAKKKRATRSSTGRALLQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SP71</accession>
    <name>A0A392SP71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010413026">
        <property type="protein sequence ID" value="MCI50207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SP71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3558" checksum="760D4EC922262D58" modified="2018-12-05" version="1" fragment="single">MLDPGDDGGVHESGDSSLCFSLRDMGNLDPPPIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRD5</accession>
    <name>A0A392SRD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010416375">
        <property type="protein sequence ID" value="MCI50416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5076" checksum="0B76E87AB840C178" modified="2018-12-05" version="1" fragment="single">FQRMFTRLNRMLATQVTACTVNWPKPAKFCRMNSNASQLANATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SWQ4</accession>
    <name>A0A392SWQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-asparaginase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010445278">
        <property type="protein sequence ID" value="MCI52306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SWQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.30">
        <property type="entry name" value="(Glycosyl)asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6174" checksum="6FBB72B8CEC1FAB1" modified="2018-12-05" version="1" fragment="single">FGLQEAVDFVIKHRLDEGQAGLIAVSSKGEVAYGYNCNGMFRGVATQDGLKEVGIWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZ06</accession>
    <name>A0A392SZ06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010467700">
        <property type="protein sequence ID" value="MCI53712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZ06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6346" checksum="3A0FBD75B3CAF455" modified="2018-12-05" version="1" fragment="single">MTGISAEREYVREGKISKMVIIELTDDSGKCECALFGDYVDGLNKKMGKSSYGLPIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0P3</accession>
    <name>A0A392T0P3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010471714">
        <property type="protein sequence ID" value="MCI53947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0P3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5931" checksum="4B66069F30F22516" modified="2018-12-05" version="1" fragment="single">MSLLLLITRELPPETFSRPVACAFGLSELGREALEEFVAPAPVWLPVNASALPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2Q6</accession>
    <name>A0A392T2Q6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010479177">
        <property type="protein sequence ID" value="MCI54440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2Q6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="84" mass="9705" checksum="CE693592DE978DF6" modified="2018-12-05" version="1" fragment="single">EEVKFLGHVISQGGVSVDQSKVEAVLNWEQPRSITEVRSFLGLAGYYRRFIRSFAQIALPLTRLTRKDTPFIWDEEMDGVSERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7V4</accession>
    <name>A0A392T7V4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010509188">
        <property type="protein sequence ID" value="MCI56240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2644" checksum="737569DE2C2A77D6" modified="2018-12-05" version="1" fragment="single">WCWVLLLFCLFGNAVVLGFGVVMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAU0</accession>
    <name>A0A392TAU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010523737">
        <property type="protein sequence ID" value="MCI57125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="63"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8231" checksum="9E0ED3B1DA0C3CBD" modified="2018-12-05" version="1" fragment="single">TGAFYTGAFPTGSTPTYPPSTGAFPTGSTSQYPPLYHGNLFHDNGRFLEMMGSHVPQQHHHQQQQQQQQQQSMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBI5</accession>
    <name>A0A392TBI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010537477">
        <property type="protein sequence ID" value="MCI57924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="2270" checksum="FC69424109238277" modified="2018-12-05" version="1" fragment="single">MDTEKLKLQRSSMDAEKMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TC68</accession>
    <name>A0A392TC68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539037">
        <property type="protein sequence ID" value="MCI58027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TC68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9806" checksum="68EAC354543E6E9E" modified="2018-12-05" version="1" fragment="single">QGLALMAQHGASASRGNRDDHASRSATPPRHDDNSPLHSSNGSDEDDPRCPLTRDIMRAPIPTGFERPPPLGAYDGQTDPDEHIDNINAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFM5</accession>
    <name>A0A392TFM5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010550671">
        <property type="protein sequence ID" value="MCI58725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7477" checksum="EAE99EE193B10C06" modified="2018-12-05" version="1" fragment="single">MLRLTSDFLEEVVEKQKADTRLMKFKALIEKGKKLDIEIDENGVMRCRGRVCVPDVPELKRMIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TH66</accession>
    <name>A0A392TH66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010582668">
        <property type="protein sequence ID" value="MCI60499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TH66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8715" checksum="B61E81467A69CA61" modified="2018-12-05" version="1" fragment="single">MHTEADTGNIHSPKDNVTDSQAQIPPISSPLNQPLPETNIDPYLLQPINIAYPPQTSDLPPITSETDLDTVAEGIKIAAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP44</accession>
    <name>A0A392TP44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIR-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010624663">
        <property type="protein sequence ID" value="MCI62752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF159">
        <property type="entry name" value="TIR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="14"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI62752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5666" checksum="AD7A742BD2CB938C" modified="2018-12-05" version="1" fragment="single">MASSSSQAVATDMKQYDVFISFRGDDTRVGFTSHLHAALKRSYVKTYIDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPX5</accession>
    <name>A0A392TPX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010615122">
        <property type="protein sequence ID" value="MCI62220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8435" checksum="53B0DA0F2AC8E7E3" modified="2018-12-05" version="1" fragment="single">QQHIADESKLKDLKAKNYLFQSIDRSILETILVRDTAKDIRDAMRRKYQGSTKVKRAQLQALRREFEVLAMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQR0</accession>
    <name>A0A392TQR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010638088">
        <property type="protein sequence ID" value="MCI63491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7861" checksum="084090B489090C88" modified="2018-12-05" version="1">MLCFWRNTHIHVAQRAVHSCRAVQLSAFGATREPMLRNAQCNPVFLYFLMSMAQRASLCCATRRVFGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEG5</accession>
    <name>A0A392UEG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010783340">
        <property type="protein sequence ID" value="MCI70806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8313" checksum="1E4CE7ADD8FAA5F8" modified="2018-12-05" version="1">MTIHQVLKRTGPEESHIMPHLSIGITRHLRHPAEGGVPHNLNSKHPKHGSDAPAVSWSVSENGLADQVSAGTAGSRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEV9</accession>
    <name>A0A392UEV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010795207">
        <property type="protein sequence ID" value="MCI71377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8508" checksum="B2163CE10D701D53" modified="2018-12-05" version="1" fragment="single">TPSGIPSGHVSPAPSVEIVEKRGRDGDIEDVSSRKNLRLDAVSGSASGPHRLTLGHPAEDFVLPPAFGHSPFLMVTPRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJK5</accession>
    <name>A0A392UJK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010845024">
        <property type="protein sequence ID" value="MCI73731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8281" checksum="F2E8E19952682C54" modified="2018-12-05" version="1" fragment="single">SKQSKAQKKLKFKQQESSDSGKTDSDWAQFLKTYDPNEEETDSVEEVTQKLPRTKESKKEDSKLPESVQDSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ61</accession>
    <name>A0A392UQ61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010889454">
        <property type="protein sequence ID" value="MCI75721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="44"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI75721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8173" checksum="1F8315ABDAAF5649" modified="2018-12-05" version="1" fragment="single">GAGNCPICGMSGHRFFECPKRDGRCFKCGDPGHKSDQFKKGVICFNCKEPGHKSNVCKKPIVAGGKVFALDGGDVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUS7</accession>
    <name>A0A392UUS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010976825">
        <property type="protein sequence ID" value="MCI79577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4434" checksum="4DAEE809A0B5E322" modified="2018-12-05" version="1" fragment="single">VWGIGKAIGVKFNSDNANRFSSLVRAGKGKQASADAARGVSGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW83</accession>
    <name>A0A392UW83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010969555">
        <property type="protein sequence ID" value="MCI79249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4105" checksum="A265B89D2767B594" modified="2018-12-05" version="1" fragment="single">MLGECQSLLNDFVLQPNISDKWVWRYDTVGGYTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZG5</accession>
    <name>A0A392UZG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011018164">
        <property type="protein sequence ID" value="MCI81406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7117" checksum="CDF20153F6B2D7CD" modified="2018-12-05" version="1" fragment="single">TRSNTGRVLLQGGSAQNLTAGDDVVAQEDAEVVADNVQAPRPFCCPKSKKSKVPPPSFWDVDFNSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2W5</accession>
    <name>A0A392V2W5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011022015">
        <property type="protein sequence ID" value="MCI81569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2W5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6765" checksum="C39B7E157B9383D6" modified="2018-12-05" version="1" fragment="single">MTEAPLLSFSDWRVSYPARRADDRRSFHTDQHRNATCHHLLRGAQMAETASKIHIFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6Y0</accession>
    <name>A0A392V6Y0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011047284">
        <property type="protein sequence ID" value="MCI82595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6Y0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2860" checksum="B9618DAB38F3D8E4" modified="2018-12-05" version="1" fragment="single">MEFWVALNPKPRAEHPVLSRVARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBE3</accession>
    <name>A0A392VBE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011084774">
        <property type="protein sequence ID" value="MCI84185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="14"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7354" checksum="C1A8B00393CD1FB0" modified="2018-12-05" version="1" fragment="single">FKDCWVDSTLLQSLEDQRIENERLAEAAARLAEELPEITQEDATDDVLASQNQEDVLMIDYPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFQ1</accession>
    <name>A0A392VFQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011136093">
        <property type="protein sequence ID" value="MCI86282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6354" checksum="9BB264C44977DE12" modified="2018-12-05" version="1" fragment="single">MFRYEKKTSKDGDKGKRPTKVSASARRQKAAENPPKKRAQKRPAQDEADETAQAEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VH42</accession>
    <name>A0A392VH42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011173568">
        <property type="protein sequence ID" value="MCI87716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VH42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5304" checksum="B7F777A0D53EFFDA" modified="2018-12-05" version="1" fragment="single">MASSGPNDFLASAKGAAASAQTTLGQQGEKVGAAAAGVQKTVGEYVTKATDYVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VK17</accession>
    <name>A0A392VK17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011148077">
        <property type="protein sequence ID" value="MCI86730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VK17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2755" checksum="AA62E83FEDA1E2EC" modified="2018-12-05" version="1" fragment="single">SVEICMSQGVRIASTPVPDSYPSMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VKL4</accession>
    <name>A0A392VKL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011153280">
        <property type="protein sequence ID" value="MCI86930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VKL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="23"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6961" checksum="9BBC8CFA3A23E440" modified="2018-12-05" version="1" fragment="single">MRYVEEEEEHEMDPGGNMWVQMLQQQQTMLQQQQAMHHQYQAQQAQTERQHREMMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VME7</accession>
    <name>A0A392VME7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011196524">
        <property type="protein sequence ID" value="MCI88569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VME7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2236" checksum="5AFEB21613D8D960" modified="2018-12-05" version="1" fragment="single">GTETEAATGRGSNDSLTVAIASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMI8</accession>
    <name>A0A392VMI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011223977">
        <property type="protein sequence ID" value="MCI89618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7053" checksum="00C1615AB699022E" modified="2018-12-05" version="1" fragment="single">LPGESKKKNLKRKEVSSSDSDVVIEEDAVEDAGTSAKSVAEGRKRARTVSSVPIDNVSFHHEEGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR18</accession>
    <name>A0A392VR18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011255803">
        <property type="protein sequence ID" value="MCI90848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1974" checksum="0EBD858B436F45AB" modified="2018-12-05" version="1" fragment="single">MLDCCGFSARIGMDVLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTS6</accession>
    <name>A0A392VTS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011228804">
        <property type="protein sequence ID" value="MCI89830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8096" checksum="84CD0013ADE1C5EB" modified="2018-12-05" version="1" fragment="single">RAEQAPPVQPQPNQGVQPQVPRGNPVFREFCRMNPPTFEGQYEPTEASEWLFRMEDMMEDLDCTLAEKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW47</accession>
    <name>A0A392VW47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011305651">
        <property type="protein sequence ID" value="MCI92608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4266" checksum="0A2A644B12428EC5" modified="2018-12-05" version="1" fragment="single">MTGVKKKKPPENVVHGDASETNTAVNSPSESVNTAPEVVCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWM6</accession>
    <name>A0A392VWM6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter B family-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011309902">
        <property type="protein sequence ID" value="MCI92774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWM6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005743">
        <property type="term" value="C:mitochondrial inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015421">
        <property type="term" value="F:ABC-type oligopeptide transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090374">
        <property type="term" value="P:oligopeptide export from mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394:SF1">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43394">
        <property type="entry name" value="ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3483" checksum="CC782ED40A7B6BE1" modified="2018-12-05" version="1" fragment="single">MLKNPKILLLDEATSALDAESERIVQEAIDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZ04</accession>
    <name>A0A392VZ04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011293964">
        <property type="protein sequence ID" value="MCI92201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZ04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3846" checksum="8F4F94A072FC9A87" modified="2018-12-05" version="1" fragment="single">MGAFLQPDVKEKLVKLLQEYVDVFAWSYQDMPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1Z5</accession>
    <name>A0A392W1Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011338427">
        <property type="protein sequence ID" value="MCI93779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7968" checksum="BA6A3EBE62FE944B" modified="2018-12-05" version="1" fragment="single">QPPPQPAAQQEQHQDPPHIPQQHQYSDFELGMVASMYDQYYRMDWGFPHYSPPLMAVVQDYRAQVPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W390</accession>
    <name>A0A392W390_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011350718">
        <property type="protein sequence ID" value="MCI94229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W390"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4730" checksum="5865EA9D6EE2D66F" modified="2018-12-05" version="1" fragment="single">MHVADVSSADSPSRSHNRNPVMASGEASCEIHLRFQVLEITHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8I6</accession>
    <name>A0A392W8I6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011387180">
        <property type="protein sequence ID" value="MCI95451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8I6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3149" checksum="9FA4E3BA99A80FA3" modified="2018-12-05" version="1" fragment="single">IMYGGIHGSGARAGAKFFRSAHFSSDLHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8V3</accession>
    <name>A0A392W8V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407550">
        <property type="protein sequence ID" value="MCI96172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7222" checksum="299A2E4666471A21" modified="2018-12-05" version="1" fragment="single">AVASEHDPLVLILQEQLETQKAEQELLKEEVKNLTENQHHVIQTQENMNSKLDAILAFMSKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W931</accession>
    <name>A0A392W931_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011434010">
        <property type="protein sequence ID" value="MCI97144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W931"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6659" checksum="FB2182F9635D8E96" modified="2018-12-05" version="1" fragment="single">MLVDSSGKIHGKQDFPLESEAELPVQVVAGVELSVVVRHASFLYDASQLAPAVLDIADALLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WDY9</accession>
    <name>A0A392WDY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011457186">
        <property type="protein sequence ID" value="MCI97879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WDY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7528" checksum="95996510B3F03CC1" modified="2018-12-05" version="1" fragment="single">TAHPVPEHHDGEPAQAKHHQDDDMDEGHSGYDGDDIVREMEEEEEIEREGDEGMPKVRRPAWVNPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WFB6</accession>
    <name>A0A392WFB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011446304">
        <property type="protein sequence ID" value="MCI97521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WFB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4816" checksum="47C7C2636D42A375" modified="2018-12-05" version="1" fragment="single">VSSGSTSSSVDLPSCSITTLYEDLTVKVSGSDWCEPEPRRGRVLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N254</accession>
    <name>A0A392N254_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding transcription activator 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026013">
        <property type="protein sequence ID" value="MCH93890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N254"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="67"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22337" checksum="68D65CB25D26A874" modified="2018-12-05" version="1" fragment="single">MHMESRTLLSRGGAIGCWTRHLTILFSCITETQVSNRIVPASYGFHITVFTHMLQGRLSSGPGTQLSPGSSSAYSQQSPSSYSNHNRGSTSIVDDSYEPNQSFSSPVSAEVTSDNNGMSHSEGTEAESGTSADFKITQALRRLEVQLSLNEDNFEEIAPFRNEQEVTHDSIAQNHQAVICKQEESAALSGPDDQGLLYDGYNGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3C2</accession>
    <name>A0A392N3C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative rRNA methyltransferase YlbH-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023930">
        <property type="protein sequence ID" value="MCH92994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031167">
        <property type="term" value="P:rRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004398">
        <property type="entry name" value="RNA_MeTrfase_RsmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43542">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43542:SF1">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03602">
        <property type="entry name" value="Cons_hypoth95"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7702" checksum="9C80F4AF16D6CCC8" modified="2018-12-05" version="1" fragment="single">MQAAGGSPATLRPGRWLDLYSGTGSVGIEALSRGNSGTFDYISVTPPYEVVDYAVLMRLISESPFLGEDTFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6E0</accession>
    <name>A0A392N6E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029678">
        <property type="protein sequence ID" value="MCH95377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF49">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="27488" checksum="D79BD5B6254A94E8" modified="2018-12-05" version="1" fragment="single">MGEISITTRLLDKTAFVKDRQILDRILIANEVVDEARKTKKELLLFKVDFEKAYDSVDWGYLDAVMGRMSFPILWRKWIKECVCRASSSVLVNGSPTDEFPLERGVRQGDPLSPFLFLLAAEGLNVLMQAMVENQFFSGYSIGMQSPISVSHLQFADDTLLLGTKSWANVRALRAVLVLFETMSGLKVNFNKSMLVGVNIADSWLRVAATALHCKVGNMSFLYLGLLIGGDPRRLGFWESVLTRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N755</accession>
    <name>A0A392N755_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029799">
        <property type="protein sequence ID" value="MCH95422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11002" checksum="01168121CE7F6825" modified="2018-12-05" version="1" fragment="single">MLVXIWKQIVKFQRQFLWGGTIMESKIHWVSWANVCKSKADGGLGIRDLRAVNLALLGKWRWRLLSGGQGIWRYILLAKYGSLYPSTHFGGRPVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCJ6</accession>
    <name>A0A392NCJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035349">
        <property type="protein sequence ID" value="MCH97586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="45"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17447" checksum="8F61F8D38A0A2365" modified="2018-12-05" version="1">MEIVDKNLASIEGEYTSVKEKLGKEMEDLKTSHKDELAKLKNGCDDQLAKMKEDYVAEVEKLKKEAKTQGELASKLTKEKDEAIAVSSALAEEKVALEKDVDGLQLSVDAQYEEGFLFALEQVKILFPDLDEQRLGEADAMKKIEDGKLIDDAPPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIF6</accession>
    <name>A0A392NIF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/RNI/FBD-like domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040786">
        <property type="protein sequence ID" value="MCH99610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055411">
        <property type="entry name" value="LRR_FXL15/At3g58940/PEG3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF16">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24758">
        <property type="entry name" value="LRR_At5g56370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box/LRR-repeat protein 15/At3g58940/PEG3-like LRR" evidence="1">
        <location>
            <begin position="57"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24758"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22943" checksum="28107E4910BA6EAA" modified="2018-12-05" version="1">MNLRFDDKTFPGPFSFCQFVHSIFTKRDNTLPIHSFHLNSGHYYYKTDFYGFVYAAITRGVQNLSIDFSHSDFHRITLSTFVLTTKTLSVLKLKRIAFNEISYEDDPCFDLPSLKVLHLESVAFTFYKHIRKLLYACPILEELEIKDLIVKKQCMELPAGTDVLSNLVRANISGWIIELHWLHNVHHLCIKLCPEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NN32</accession>
    <name>A0A392NN32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045758">
        <property type="protein sequence ID" value="MCI01298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NN32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="159"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="184"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="269" mass="32031" checksum="B60ECD7DB5CE8E84" modified="2018-12-05" version="1" fragment="single">GLGYEYGKTYIKQAYNVCELVGKSLVYYYVPESEESKILNASENQGTFLRSPDTAESEVLSTPESEVNNSEVPSCSEPETSKSKALNISEPKIVDSEKSKEKCSKPKTQQRKVTKKFKTKTLPKKQLKPQVIYDSRIRNYNQSKFWNDNQQRFWNHRQPEAWRRNNNQNYKKSQNEHYYSKPRFSPKAHKSKPFRTNQRGPRSKWVPKSQIFYSSDLANRKDFVLPKVWMQVKWKGRRAYVPKLWFASRDEENYWAEYVRECKDYYHDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNQ5</accession>
    <name>A0A392NNQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional corepressor SEUSS-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046293">
        <property type="protein sequence ID" value="MCI01497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="127"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="158"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="248" mass="26597" checksum="E59B5FCD404883BD" modified="2018-12-05" version="1" fragment="single">MVPPGPGPPTPIGGAHSLSPSLMRTNSGMLGAQGALMSSQTSYPSLVSPRTQFNNMNILGNMSNITSMLNQSFSNGIPNHGLTGQGSSQRGGIETGAETGQLSSVGNGTSFNNSPSSFIQSNMANVGSSGQIQGQQFSNPSSNQLLPDHQHSQQLDPQNFQHSQQSMQQFSSPLNTQQQQHFQSMRGGMGGMGPVKLEPQTNNDQLGQQQLQSMRNLPPVKLDQQQIQTMRNLAPVKMEPQHCDQPLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NP80</accession>
    <name>A0A392NP80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">10 kDa chaperonin-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044605">
        <property type="protein sequence ID" value="MCI00909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NP80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044183">
        <property type="term" value="F:protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="entry name" value="GroES chaperonin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="10 KDA HEAT SHOCK PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772:SF0">
        <property type="entry name" value="10 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5886" checksum="6A04658715F9FDC9" modified="2018-12-05" version="1">MNSRKVVDVGPDLHGKDGKLLPVAIKEGDTVLLPDYGGTEVELDHKEYVSICSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUK7</accession>
    <name>A0A392NUK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052393">
        <property type="protein sequence ID" value="MCI03511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="48"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10634" checksum="3B8A2F0B685DBE4F" modified="2018-12-05" version="1" fragment="single">MKNTPSNTSSSSRSNSSDPDFDATDEVSPLLTTTERVTRSSKKPLVGSSSNSVSRGKSLSESSVAAFGPLETPVYRKTRTPTVNITKLKKELDAAKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWL9</accession>
    <name>A0A392NWL9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA helicase</fullName>
            <ecNumber evidence="1">3.6.4.13</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.13"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.13" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010052648">
        <property type="protein sequence ID" value="MCI03579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00268">
        <property type="entry name" value="DEADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044742">
        <property type="entry name" value="DEAD/DEAH_RhlB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050547">
        <property type="entry name" value="DEAD_box_RNA_helicases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47963">
        <property type="entry name" value="DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47963:SF3">
        <property type="entry name" value="DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="233"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI03579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="34095" checksum="439F898E02023244" modified="2018-12-05" version="1" fragment="single">LPILSVIGPLRGENREGDVDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSANSSKPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLQKFKNGEVRVLVTNELSARGLDVAEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYZ4</accession>
    <name>A0A392NYZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053080">
        <property type="protein sequence ID" value="MCI03725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="58"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="14680" checksum="2BF7E8F10214140D" modified="2018-12-05" version="1">MPWTSRGIQSLCHDDIWKSDSTSLFDIRTSLLVKESQLDIFRQEIATTTVSAIFAQPSDSQQVDSTSQDPQSNQFGSRGRGRNVYCGGRGRGRTGGRFELPIFPQSQNLLMPEPWFPDSGATHDLTSDLSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2K7</accession>
    <name>A0A392P2K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060288">
        <property type="protein sequence ID" value="MCI05964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF252">
        <property type="entry name" value="RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NB-ARC" evidence="1">
        <location>
            <begin position="49"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17460" checksum="87BDA2CFC52BD5D5" modified="2018-12-05" version="1" fragment="single">YEPELIKKIVEDTVPKLPPVPAPMKDXXXXXXXXXXXXXXXXXXXXDTICMMKIYGTGGIGKTTLAMDIFNKIRRQFEAASFLANVREKSNRSAKGLEDLQRTLLTEMGEEAEETMLGSTFKSGSFEIKRKLGHKRVLLVLDDVDSLKQIEALTGGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFF2</accession>
    <name>A0A392PFF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073223">
        <property type="protein sequence ID" value="MCI09595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7730" checksum="6BED6A02A3CE658C" modified="2018-12-05" version="1">MIAKSSIGPSVVLFGIIPRAFRKEICIAASISLEHSEAVELAAATTVATVPNLVEPFPLKEFTASLWAFRTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIP8</accession>
    <name>A0A392PIP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080482">
        <property type="protein sequence ID" value="MCI11517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF18">
        <property type="entry name" value="RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="221" mass="25809" checksum="04E10550AF20DB22" modified="2018-12-05" version="1">MITAPYTPQQNGVVERKNRTIMEMTRCLLHDKGLPKKFWAEAANTAVFLLNRLPTKALQKKTSFEVWYDNKPKLINLKIFGCLCFSYIPSVKRDKLDKKAEPGIFVGYSSTSKAYRIYLPQSNKVIVSRDVKFLESDSWNWEDDEKVEFQEENEDVDDEPVRGTRSLSDIYQRCNVAVMEPEVYEEAAADQKWVNAMKEELKMIEKIKHGSWWIDLITKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK11</accession>
    <name>A0A392PK11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-15-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084119">
        <property type="protein sequence ID" value="MCI12423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="4"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8717" checksum="4A73B29F89926603" modified="2018-12-05" version="1" fragment="single">VSNEEAKQRENSTLRKMLEALNLELDAAKLATINECNKNAVLQNQLELSAKEKSALKRELVSVDELRKENAMLKVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL76</accession>
    <name>A0A392PL76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085803">
        <property type="protein sequence ID" value="MCI12841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10202" checksum="31B4551F4776D784" modified="2018-12-05" version="1" fragment="single">MKVTPSIAPEVRLNKNQLKKLDNLDASFGSLSSNWSAPKAGKAALTPLVPNATRELVSIVGNVLELIWSTGLSNLVWGSVLASSGSNQCSQVLTPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL86</accession>
    <name>A0A392PL86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative F-box/RNI/FBD-like domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085843">
        <property type="protein sequence ID" value="MCI12851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="188" mass="21316" checksum="8C9328BC89DD03A8" modified="2018-12-05" version="1" fragment="single">TLCISSATLVNLTLHNQFSNFYTIELCTPSLCTFAFTGTPYQELSGSDVSSLKHVEISAEVIRYQKEPPLILFNWLREFPNIKSLTVSATTLQILYLIPNLLKINLPSLGNLESLRVKMEPFSDEFRMTLCHVMLRKAKSKKESANLRRTFREGLEPSSPIPDGVMDFLLQNSPTAKVDFIDCSRKPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMC6</accession>
    <name>A0A392PMC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication factor C subunit 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085608">
        <property type="protein sequence ID" value="MCI12797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005663">
        <property type="term" value="C:DNA replication factor C complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050238">
        <property type="entry name" value="DNA_Rep/Repair_Clamp_Loader"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669">
        <property type="entry name" value="REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669:SF9">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03215">
        <property type="entry name" value="Rad17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18313" checksum="6C09A374B043433D" modified="2018-12-05" version="1">MAEETYPMEIDIADKGKSVIPAGNPSYGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGLSIVFNFVLNKEEISIVLHLSLPSLFRFTELLGFSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNH3</accession>
    <name>A0A392PNH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calcineurin-like metallo-phosphoesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086457">
        <property type="protein sequence ID" value="MCI13000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027629">
        <property type="entry name" value="DevT-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35769">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35769:SF2">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16318" checksum="3E0918DB8A0CD02B" modified="2018-12-05" version="1" fragment="single">NGPTGLGSGLNDICGKDWELDGGDHGDPDLACAISSLKENNQISIPLVVFGHMHKELAHGNGFRKMIVVGTDNTIYLNGAIVPRVKSFGDDDKRSLDDESPLSSPEAKGTVRAFTLVELSKGRVTRVSESWVSVVEDKTTLKEEHILFEGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNM1</accession>
    <name>A0A392PNM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088154">
        <property type="protein sequence ID" value="MCI13414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039904">
        <property type="entry name" value="TRANK1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21529">
        <property type="entry name" value="MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21529:SF4">
        <property type="entry name" value="TPR AND ANKYRIN REPEAT-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18852" checksum="5C23C34906C2C756" modified="2018-12-05" version="1">MVFIRTTEACKDLVKESVYENIRLKERLTYGQIGRVAXXXXXXXXXXXXXYVDIMTRFEDNLPWKKFIHQWSSAQENDSSAELNRALSLYEALEYSYNVNWMKETDYLSPSCFMYLVERLLLLTSCRKGLMFATKSSLIEWLNYQDENSLANLSLTPAQGSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPB6</accession>
    <name>A0A392PPB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DEAD-box ATP-dependent RNA helicase 40-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087899">
        <property type="protein sequence ID" value="MCI13339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="76"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="26217" checksum="1FEF0B3A4F5760BA" modified="2018-12-05" version="1" fragment="single">MHHQMPPQVIRPQQFGQGGTQDHGSHIVQPQAPQFTPQNMHYMGYQQNMVTPRQPNSQQIQPNMHPSGQPNPQPNQHPHNIHNQPFENQQDFKTAMPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSGQVPNASVNPGQPQQFRGYPGSMQQPSPTMQSQPGGSDLYYQHGPNFQNQMSPGMMHGHPSNVHPVAQKMMGHEDNVHGRAGNDYYYNSNKEMPPMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRC0</accession>
    <name>A0A392PRC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Proline-rich protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093203">
        <property type="protein sequence ID" value="MCI14638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005199">
        <property type="term" value="F:structural constituent of cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003883">
        <property type="entry name" value="Extensin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02095">
        <property type="entry name" value="Extensin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="14075" checksum="C528DEA032644D40" modified="2018-12-05" version="1" fragment="single">PPVEKPPAYKPPVEKPPVYKPPIENPPIYKPPIEKPPVYKPPVENPPVYKPPFEKPPIYKPPFEKPPVYKPPIEEPPFYKPPFEKPPLYKPPFEKPPLYKPPFEEPPHHPKYPPAXXATRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSV1</accession>
    <name>A0A392PSV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092165">
        <property type="protein sequence ID" value="MCI14376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7120" checksum="7D51960CCC8AAE24" modified="2018-12-05" version="1" fragment="single">MCVYPSLFELCGDWKILGTTGIGRKQQKAXCYSSSSSPSXLHPRLARTAAAAXACVLSTYVITSCNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVZ5</accession>
    <name>A0A392PVZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096702">
        <property type="protein sequence ID" value="MCI15486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="8">
        <location>
            <begin position="3"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI15486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="21447" checksum="EA9F86466555E04D" modified="2018-12-05" version="1" fragment="single">VDSDPRRVDFNIISGTSMACPHVSGLAALIKSVHPEWSPAAIRSALMTTAYTTYKNNQTLLDGATKNPATPFDFGAGHVDPVFAVNPGLVYDLTVDDYLSFLCALNYSTSNIEIVARRKYTCDPKKQYSVTDXXXXXXXXXXXXXHSVEEINYTRTLTNVGAAGTYKHLVRNQITLEVLEGWNGLMEKLLLEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWY5</accession>
    <name>A0A392PWY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098087">
        <property type="protein sequence ID" value="MCI15816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7667" checksum="D281971DF4911B11" modified="2018-12-05" version="1">MSSNIRDGLSYSGDLPPPPPAKTRSQRSPGSSQMQQGMAYNNDPRPGPEAITGSQRTQTLSAQGLSYTNTNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PY15</accession>
    <name>A0A392PY15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Alpha-xylosidase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the glycosyl hydrolase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098296">
        <property type="protein sequence ID" value="MCI15855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PY15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.40.1180:FF:000044">
        <property type="entry name" value="Alpha-glucosidase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="entry name" value="Golgi alpha-mannosidase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048395">
        <property type="entry name" value="Glyco_hydro_31_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000322">
        <property type="entry name" value="Glyco_hydro_31_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22762">
        <property type="entry name" value="ALPHA-GLUCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22762:SF164">
        <property type="entry name" value="ALPHA-GLUCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01055">
        <property type="entry name" value="Glyco_hydro_31_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21365">
        <property type="entry name" value="Glyco_hydro_31_3rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51011">
        <property type="entry name" value="Glycosyl hydrolase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5 6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Glycoside hydrolase family 31 TIM barrel" evidence="7">
        <location>
            <begin position="7"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl hydrolase family 31 C-terminal" evidence="8">
        <location>
            <begin position="167"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF21365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI15855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="233" mass="26287" checksum="FF298D92A1461313" modified="2018-12-05" version="1" fragment="single">YKTIATSATHYNGVLEYDAHSIYGFSQSVATHKGLLGIEGKRPFILSRSTYVGSGKYAAHWTGDNQGTWENLRYSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDSVAQSARNALGIRYKILPYLYTLNYEAHVSGSPIARPLFFTFPTYTECYDVSTQFLLGSSLLISPVLEQGKTQVKALFPPGSWYSLLDWTHTITSKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0A5</accession>
    <name>A0A392Q0A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipid phosphate phosphatase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">10/8</strain>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074431">
        <property type="protein sequence ID" value="MCI09940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010106995">
        <property type="protein sequence ID" value="MCI17781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6665" checksum="5B156C898F29EA9D" modified="2018-12-05" version="1">MLAESRNGAQPPIINDSQLAQSAELQTVSLYIPSQHDGDARGNSWDSSPMLDGGLSQNARMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1K9</accession>
    <name>A0A392Q1K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Soyasapogenol B glucuronide galactosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106765">
        <property type="protein sequence ID" value="MCI17719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045:SF3">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045">
        <property type="entry name" value="UDP-GLYCOSYLTRANSFERASE 72B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12359" checksum="5408447B5388B6C2" modified="2018-12-05" version="1" fragment="single">GLPMVTWPLFAEHFFNEKLVVDVSRIGVSVGAKEWRNWNEFGSDVVKREEIGKAIGLVMENGKEAEEMRLRAKGLSDDAKKAILVGGSSHANLIQLIEELKSLKLQRLNGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4C4</accession>
    <name>A0A392Q4C4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphatidylinositol/phosphatidylcholine transfer protein SFH8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SFH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112595">
        <property type="protein sequence ID" value="MCI18958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4C4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00170">
        <property type="entry name" value="SEC14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.525.10">
        <property type="entry name" value="CRAL-TRIO lipid binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001251">
        <property type="entry name" value="CRAL-TRIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036865">
        <property type="entry name" value="CRAL-TRIO_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051026">
        <property type="entry name" value="PI/PC_transfer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45657">
        <property type="entry name" value="CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45657:SF41">
        <property type="entry name" value="SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00650">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52087">
        <property type="entry name" value="CRAL/TRIO domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50191">
        <property type="entry name" value="CRAL_TRIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="CRAL-TRIO" evidence="6">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI18958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5465" checksum="24B77D54A900BED9" modified="2018-12-05" version="1" fragment="single">MRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6B0</accession>
    <name>A0A392Q6B0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113185">
        <property type="protein sequence ID" value="MCI19086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6B0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47592:SF30">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47592">
        <property type="entry name" value="PBF68 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="146" mass="16582" checksum="EBC6ABBDCF088AD9" modified="2018-12-05" version="1" fragment="single">MVDERSVEAQSHELQKIAHEIVTEGMPLDEQFQIAMMIDKLPPSWKDFKNQLRHKTKEFSIESLITRLRIEEESRRQDQKEEEKVYVVTGNKKKFGAVLKPTGKPLKNQNRGPMNRIKNGNPSRAHNAKQQPPRNDNGVGGAGGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7Z6</accession>
    <name>A0A392Q7Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pollen-specific protein SF21-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NDRG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115964">
        <property type="protein sequence ID" value="MCI19666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004142">
        <property type="entry name" value="NDRG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11034">
        <property type="entry name" value="N-MYC DOWNSTREAM REGULATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03096">
        <property type="entry name" value="Ndr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI19666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11079" checksum="F8666F00EF3A3C17" modified="2018-12-05" version="1" fragment="single">TEYYYLPSFSPLELQQEFLQLGAAAICNDNPIPSAEDLADQIVEVLNYFGLGAVMCMGVTAGAYILTLFAMKYRERVVGLILVSPVCKAPSWTEWFYNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8G9</accession>
    <name>A0A392Q8G9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115277">
        <property type="protein sequence ID" value="MCI19545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8G9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17957" checksum="21CD6BFEAF70B7D7" modified="2018-12-05" version="1">MNSWRGRALSKAGKEVMIKSVLQATPSYVMSMFILPSSLIDDIEKMLNAFWWGGGSNNNKGIHWLAWDKLACPKAKGGLGFRNFEAFNMAMVAKQAWNIVQNPDSLVAKLIKARYFPRSSLLEASLGYNPSFAWRSIWKARQILLRGCRWRIGCDDRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q915</accession>
    <name>A0A392Q915_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit C</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122174">
        <property type="protein sequence ID" value="MCI20883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q915"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121">
        <property type="entry name" value="NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24121:SF22">
        <property type="entry name" value="PROTEIN ACCELERATED CELL DEATH 6-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="2">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13008" checksum="4007E990896FC373" modified="2018-12-05" version="1" fragment="single">YLAVENGHEGAVKLILEKCPKNDDKPKGLSPVVEAIMKRNQGYLEGVVYLLEICKCCTIQRDKYGYFPIHLASQGGYVEVVKKLLEYCPDPTEMLDTSHERNILHIASNYGKHEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBS6</accession>
    <name>A0A392QBS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010126753">
        <property type="protein sequence ID" value="MCI21781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="18536" checksum="553BE09D07D85A41" modified="2018-12-05" version="1" fragment="single">MGFRNLRAFNEALLAKQGWRLITHPTSLVAQMLQAKYYPKEHFLKAKPKHNMSYTWRSILQASWILKKGCYWTVGNGASIELWEDNWIHQRGNASTWSPKPTSTNYLKVQDIMEDNDNGWKDHLIHQLFIPQEAQKILRIPLIDRTQDDTLTWDGTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QH28</accession>
    <name>A0A392QH28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA binding zinc finger protein (Pspzf)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132716">
        <property type="protein sequence ID" value="MCI22846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QH28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8847" checksum="B5630DE1B48D9F67" modified="2018-12-05" version="1" fragment="single">MEGQEFRVKDIEHWLMRLVSMLDLLLRYRSVYRRTLILFGFMIVERASLYGSRNMLDQHRDMRLDIDSMSYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNX1</accession>
    <name>A0A392QNX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010146018">
        <property type="protein sequence ID" value="MCI25236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9337" checksum="1B13F52054512493" modified="2018-12-05" version="1" fragment="single">PVAAVTKPKSFAQALSNVEEDISISQLPIPSVRGDKVSVTITQTDWDQFGKTCHLGNSFLWARVSLSFALAKLMIREEFGLSAPST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRG4</accession>
    <name>A0A392QRG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153173">
        <property type="protein sequence ID" value="MCI26424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="164"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20229" checksum="B941D1DDBE4CBCDE" modified="2018-12-05" version="1" fragment="single">ENVDTLDTRDHSSELSAVLGKGELSKSATTGSSYAYDDGLSSHDGMNEHFPVKHLDSLKNTDTVDEGRNKKGKGLANSSLYGDFGTQHQSHMPHDKNRDMKESRRNQIKVLDNTSHGNSRLMKTKRDHEFPSRIPFQRSGYQSHNESGRPRNGMHDQSSSFLLRDSRADTDQEKMKLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QV69</accession>
    <name>A0A392QV69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Auxin-induced in root cultures protein 12-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010157589">
        <property type="protein sequence ID" value="MCI27145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QV69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd09629">
        <property type="entry name" value="DOMON_CIL1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045265">
        <property type="entry name" value="AIR12_DOMON"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005018">
        <property type="entry name" value="DOMON_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23130:SF157">
        <property type="entry name" value="AUXIN-INDUCED IN ROOT CULTURES PROTEIN 12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23130">
        <property type="entry name" value="CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04526">
        <property type="entry name" value="DUF568"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50836">
        <property type="entry name" value="DOMON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="DOMON" evidence="6">
        <location>
            <begin position="35"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI27145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18040" checksum="75C544693DD01AB7" modified="2018-12-05" version="1" fragment="single">FIFITLISPHSALNCTSQKLPSNRIYKNCTDLPHLGATIHFTYNTTNRSLTVAYTAVPTHNGYVAWGINPTGGGMIGTQALIAYKLNGKIGVELYNLTSYGGITAVKSLSIETWDLSAEESNGVITIFGAVKFPETADNVSQVWQVGPVTNGKPAMHALQPENKEAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVW6</accession>
    <name>A0A392QVW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Plasma membrane ATPase 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160677">
        <property type="protein sequence ID" value="MCI27656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1110.10:FF:000191">
        <property type="entry name" value="Membrane H(+)-ATPase1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10568" checksum="97B06E53990D8792" modified="2018-12-05" version="1" fragment="single">YLCGEQIMELCKLREDTKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESPGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYX7</accession>
    <name>A0A392QYX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173508">
        <property type="protein sequence ID" value="MCI29563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11400" checksum="8B97357249C5A9F4" modified="2018-12-05" version="1">MKLRDKAHDIALKLSPKIFNEAKIDPVGTCYNYHNPTQLPSPPPPRKVWLSYYSQPFEKKIVHPGPFHISGLEVRRKMRDNSLSNRRHTLQSNTTHLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZP6</accession>
    <name>A0A392QZP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha/beta-hydrolases superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172935">
        <property type="protein sequence ID" value="MCI29487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31934">
        <property type="entry name" value="ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31934:SF6">
        <property type="entry name" value="ALPHA_BETA-HYDROLASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14572" checksum="DBE12A2EF8AD14C9" modified="2018-12-05" version="1" fragment="single">MRALEDLTYERRREFLEKHRLPEELPVVSFRTEASVSPAVLATLSHVAHAELPMVASAGESTKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVTCRDAEVPGSIVVRPKRKLDHAWMVYSSLNDDLTEGDAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R959</accession>
    <name>A0A392R959_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NLI interacting factor-like phosphatase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010195071">
        <property type="protein sequence ID" value="MCI32386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R959"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9695" checksum="03C8C407F1D66E5F" modified="2018-12-05" version="1" fragment="single">MEAEKKSCSITIKDDRDDHDDHKDSSEEQELSLSLEKLNLVSKKKKLLVMNLNGFLLHKVYFHDKEALPKSRTDHYRSYNFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R9V2</accession>
    <name>A0A392R9V2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204297">
        <property type="protein sequence ID" value="MCI33428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R9V2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12451" checksum="8827D50CE22EAFD3" modified="2018-12-05" version="1" fragment="single">YVAVECGDCPFPCVVFHLQINGGRDGHEELDFDRLSSPSMAEGDNEVDVPPRLAGGAIETLQVRAYIRGHVFSLKAQYFEEGCVHDVTRASFVDQDSVDVEVRHASPDQQWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REN4</accession>
    <name>A0A392REN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent RNA helicase dhx8-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010219992">
        <property type="protein sequence ID" value="MCI35078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5480" checksum="2F96CEFC3B1C242C" modified="2018-12-05" version="1" fragment="single">GGGMDHVEEESERSIPDLPKKNVEVAAAADDSESRIQAARERFLARKANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGB9</accession>
    <name>A0A392RGB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217924">
        <property type="protein sequence ID" value="MCI34876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF3">
        <property type="entry name" value="OS09G0267800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13674" checksum="5863787C46BD1917" modified="2018-12-05" version="1" fragment="single">MVSMILGGCHHCSLLPPIGKLHCLKELRISRMTSIMSVGAEFFGSNCPSFQPFPSLETLKFEDMPEWEIWNLIGGTTIAFPRLKCLLVDRCPKLKGNIPSTLPSLTELQLRECDLLLEARQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPP0</accession>
    <name>A0A392RPP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010245428">
        <property type="protein sequence ID" value="MCI37516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2869" checksum="D7B0F5F4C51F5CB2" modified="2018-12-05" version="1" fragment="single">KMAADVIAAEDPSSARYRQILSYQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQS5</accession>
    <name>A0A392RQS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glutamate receptor 3.2</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010262506">
        <property type="protein sequence ID" value="MCI39008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015683">
        <property type="entry name" value="Ionotropic_Glu_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34836">
        <property type="entry name" value="OS06G0188250 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34836:SF7">
        <property type="entry name" value="RECEPTOR LIGAND BINDING REGION DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Receptor ligand binding region" evidence="5">
        <location>
            <begin position="2"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI39008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13668" checksum="4EFC60512B7A5CB9" modified="2018-12-05" version="1" fragment="single">NLGMMTSGYVWIATDWLPSKLDSIEPVDANTLNLLQGVIALRHHTPDTNLKKSFFSRLKNISGTETSSFNSYALYAYDSVWLAAYALDTFLKEGGNISFSSDPKLIDTKGSMLHLSSLRVFDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYK4</accession>
    <name>A0A392RYK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010292878">
        <property type="protein sequence ID" value="MCI41479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3116" checksum="48E238229D3E0049" modified="2018-12-05" version="1" fragment="single">IVSPELPRTPQQVVSKAEVWLGGGAGGDPGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4J0</accession>
    <name>A0A392S4J0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010315398">
        <property type="protein sequence ID" value="MCI43297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4J0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7243" checksum="8E30971792F7CE19" modified="2018-12-05" version="1" fragment="single">MQVLPSARRAGAGGALRQNTEQGWRFFYQLRAAQEGWRVAPASAEEVESFCHLRVAQEGWRVAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SA61</accession>
    <name>A0A392SA61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010334811">
        <property type="protein sequence ID" value="MCI44746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SA61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6822" checksum="2A803054349D21A2" modified="2018-12-05" version="1" fragment="single">TTEGIGMLRKVVDGQIVIPDEYKQMKMEEEEEEVEEEGDAEDGREEGNQEGFEEGQGESDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBG5</accession>
    <name>A0A392SBG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340930">
        <property type="protein sequence ID" value="MCI45225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6038" checksum="322B5847EDCCEDB4" modified="2018-12-05" version="1" fragment="single">EQEEVNELGDLKLKFFLIKPRSGTCVSCRGIWRVAPFIQKAQEFSLPVARCAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDS1</accession>
    <name>A0A392SDS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010351457">
        <property type="protein sequence ID" value="MCI45996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7247" checksum="643EDC71D67F604E" modified="2018-12-05" version="1" fragment="single">MVSPKETIPDTVMTSNKEDDFDDGRTITEILNDKENIKATEEKDQTVVDNDQNMGEKEEEGKVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH04</accession>
    <name>A0A392SH04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010382361">
        <property type="protein sequence ID" value="MCI48151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5586" checksum="31F51825EB5E6433" modified="2018-12-05" version="1">MCCIGFLSYDHHFSSSLAAKSSEKVVKFIKWQSPSLGWVRLNTDGPSKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIT0</accession>
    <name>A0A392SIT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010376765">
        <property type="protein sequence ID" value="MCI47766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6348" checksum="42D3CC4DE567ABF7" modified="2018-12-05" version="1" fragment="single">TFGVGGVRCGAALRITLVRIYNGGGRFGSFLSGSDLVQSAPPPPRWWLSVFFGYSSLPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJ53</accession>
    <name>A0A392SJ53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010393138">
        <property type="protein sequence ID" value="MCI48901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJ53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8763" checksum="10634E74F2809ECB" modified="2018-12-05" version="1" fragment="single">SRFLHDVLFLAQRAASAGATRSAFVPGRFNLLVLAQCAGGSCATRSVTLFFLFFFYYMRNARAWAAQRAVYLVRVDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJJ2</accession>
    <name>A0A392SJJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010395023">
        <property type="protein sequence ID" value="MCI49043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5936" checksum="03E73F82144DDAF2" modified="2018-12-05" version="1" fragment="single">DTGNEEMLDDADDAPASDVENDVPEVIKEAESNTKVSSSEQTYAPKKGPSIRVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMI0</accession>
    <name>A0A392SMI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010408070">
        <property type="protein sequence ID" value="MCI49879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11060" checksum="CAFEA061FF042E6B" modified="2018-12-05" version="1" fragment="single">TKNTCRRPAPPSTHRDETSPPPAPPSSPQNSETLSETYKIAPNSDTENPQKETASKQTVEIGSPEKIIAETIVKMSQIETSRSTSHHSNPTLKPHVNLVYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SN11</accession>
    <name>A0A392SN11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010413940">
        <property type="protein sequence ID" value="MCI50273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SN11"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5820" checksum="325628B97C6DDB62" modified="2018-12-05" version="1" fragment="single">GYSVWHEGMPCHHIPVADGMTFCGALATVIPPVANVCMVDYPAPCSFCWHSLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ43</accession>
    <name>A0A392SQ43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010417694">
        <property type="protein sequence ID" value="MCI50517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4257" checksum="CF2911470CDE9D62" modified="2018-12-05" version="1" fragment="single">IPFLSVSEALLRRKQHLTVTKEAVLFYSFRAETLYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQZ9</accession>
    <name>A0A392SQZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010417064">
        <property type="protein sequence ID" value="MCI50465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3771" checksum="3CF246A45618184E" modified="2018-12-05" version="1" fragment="single">DDDPEADIEEAVAAVVDSDVFLECEEDGSGDEKADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRB6</accession>
    <name>A0A392SRB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010431443">
        <property type="protein sequence ID" value="MCI51408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4194" checksum="2D96839224CDDA81" modified="2018-12-05" version="1" fragment="single">MLPRRATLHKPSCMNGGVYENKILRVIPVDGEKNLDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STY8</accession>
    <name>A0A392STY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-protease-integrase-RT-RNaseH polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010445650">
        <property type="protein sequence ID" value="MCI52338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039537">
        <property type="entry name" value="Retrotran_Ty1/copia-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648">
        <property type="entry name" value="TRANSPOSASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42648:SF28">
        <property type="entry name" value="TRANSPOSON-ENCODED PROTEIN WITH RIBONUCLEASE H-LIKE AND RETROVIRUS ZINC FINGER-LIKE DOMAINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="9021" checksum="DE3C5B369F2D18E8" modified="2018-12-05" version="1" fragment="single">MYGYLYLIHEKSQSLDVFKSFKAEVELQLGKKIKVVKYDRDGEYYGRYDGSGEQRPWPFALFLDECGIVPQYTMPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUS2</accession>
    <name>A0A392SUS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010446711">
        <property type="protein sequence ID" value="MCI52399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6285" checksum="5F5E1597F9E0B92C" modified="2018-12-05" version="1">MDTSNYTFFSFTEFHIVGEVQLPVGITLFSSVTVSKSSAKFYSPFTTAPPLPRRSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T350</accession>
    <name>A0A392T350_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010498153">
        <property type="protein sequence ID" value="MCI55553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T350"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8071" checksum="E273DDBAA04252FE" modified="2018-12-05" version="1">MHESMYNMQLNQQVMSPADFQAHLAWPGDRPHFREGADVADDNDIDEAAADAVEDDDQSGDEGDDGDDDQMSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4G0</accession>
    <name>A0A392T4G0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010489862">
        <property type="protein sequence ID" value="MCI55056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5930" checksum="EEB06AAE97F0AF3B" modified="2018-12-05" version="1" fragment="single">MKLSTRMYLEGQDGLVHHTMSCRHPSSRNGDPFHPMKVKQTSLSLAIQQFMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAW4</accession>
    <name>A0A392TAW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription termination factor family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539106">
        <property type="protein sequence ID" value="MCI58032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.70.10">
        <property type="entry name" value="Transcription termination factor 3, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038538">
        <property type="entry name" value="MTERF_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4882" checksum="4C2077839C922706" modified="2018-12-05" version="1" fragment="single">MNFLVNDMGLTSEDIARSPGIIMRSFEKSIVPRCEVVKILKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCK5</accession>
    <name>A0A392TCK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010553385">
        <property type="protein sequence ID" value="MCI58883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5609" checksum="D868488E12CEF4B7" modified="2018-12-05" version="1" fragment="single">VLWDSLTGRLQQLSGKKVCVCGDFNDVCCDEENAQRDKGPGLLIIFPLISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TU01</accession>
    <name>A0A392TU01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010650625">
        <property type="protein sequence ID" value="MCI64174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TU01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4466" checksum="EFD88530DF8F657C" modified="2018-12-05" version="1" fragment="single">PPTGVVSGECAPHMLIWRGAQEENFKSGCITVTCALRQHQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TV83</accession>
    <name>A0A392TV83_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010669247">
        <property type="protein sequence ID" value="MCI65091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TV83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="80" mass="9191" checksum="F372A9F06960EDE4" modified="2018-12-05" version="1" fragment="single">MLTSLSRFVAKSAQHALPLFKLLRKEAAFEWTEEYEWALQHLKKALFEPPVLSRPNDEDVLYLYLVVASEAVSAALIRET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXD6</accession>
    <name>A0A392TXD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010670294">
        <property type="protein sequence ID" value="MCI65137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXD6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5876" checksum="A65CA4D121F7F2AB" modified="2018-12-05" version="1" fragment="single">REEMEKSMLELSWAGLREEGCVGELGAEGCEIWRFGVGSGVRGEVRVGGMAGGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2Y8</accession>
    <name>A0A392U2Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010723698">
        <property type="protein sequence ID" value="MCI67789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2Y8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8822" checksum="22889A6A88174847" modified="2018-12-05" version="1" fragment="single">MRVMISQNQSHEGRDNVEDSEEEEDEEVRGEWMEEEVAEIESADGGDNVLATNPIFTAIRGQANSSVDLLDCNHDKEGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5Z4</accession>
    <name>A0A392U5Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010745542">
        <property type="protein sequence ID" value="MCI68919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6521" checksum="AD6109DF74EFE350" modified="2018-12-05" version="1" fragment="single">MSTLYLAMKYPLDNGNIGIVRGDQALARKCYEPSLKIKHRATKPKSPLSSEIRTGGVNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5Z8</accession>
    <name>A0A392U5Z8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010710594">
        <property type="protein sequence ID" value="MCI67165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5593" checksum="3A6AD47557082C06" modified="2018-12-05" version="1">MRTVSEGDWLSYLAKSKQKKLEPEAAVSPEVQLIVGETYVAKGTKRKKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U786</accession>
    <name>A0A392U786_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010754592">
        <property type="protein sequence ID" value="MCI69369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U786"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4148" checksum="E4B2683982F2E6F6" modified="2018-12-05" version="1" fragment="single">MVVVAAPTHLHPHQSAFLSAETAAPTTPPNCNDPKRLGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UB36</accession>
    <name>A0A392UB36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010765394">
        <property type="protein sequence ID" value="MCI69914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UB36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7710" checksum="3BD2A86576A81164" modified="2018-12-05" version="1" fragment="single">MSSLMAKELELIEEFRDLSLVCQRTTRSVKLGILRLTSDFLKEVVERQKIDARLLKYKALIEQGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UD96</accession>
    <name>A0A392UD96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010761207">
        <property type="protein sequence ID" value="MCI69695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UD96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3301" checksum="60C824D47A84F65E" modified="2018-12-05" version="1" fragment="single">LAKDAEHNGPSDQPFLRQHKKVRSPIDLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UET5</accession>
    <name>A0A392UET5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010785887">
        <property type="protein sequence ID" value="MCI70926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UET5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7275" checksum="AC373A60650BDEAB" modified="2018-12-05" version="1" fragment="single">MKHNPKLFTGGYNPEGVVKWVEEVEIIFEAMGCTGEHKITLGTYVLREKANQWWKNAKLRLGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UF59</accession>
    <name>A0A392UF59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010812567">
        <property type="protein sequence ID" value="MCI72179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UF59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9028" checksum="0253F899E72266EF" modified="2018-12-05" version="1" fragment="single">PPEATHNEEQVKAQRLAQAILWEKANISNAKVEQMKKQNHDTVSGVNTCKDNIAQWTLEIQDLQIKIAELEYKIVEEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHY2</accession>
    <name>A0A392UHY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010809679">
        <property type="protein sequence ID" value="MCI72056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6165" checksum="3C5521F274BB8AAA" modified="2018-12-05" version="1" fragment="single">CHVHLHTEEDTLVLDLPLIADPDATVDTEAEALPHSLLHTDHALPPSNTKKTIHQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULK4</accession>
    <name>A0A392ULK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010843060">
        <property type="protein sequence ID" value="MCI73637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017409634" evidence="1">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4636" checksum="80B332AC45A77A0E" modified="2018-12-05" version="1" fragment="single">MWRLPLLWSWSIGSLFLPSSPGLPNKMVSKPLYDPLGHLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UM10</accession>
    <name>A0A392UM10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010861944">
        <property type="protein sequence ID" value="MCI74492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UM10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3275" checksum="574C02B7F004EB46" modified="2018-12-05" version="1" fragment="single">MGVEEFLNWQIDVDRFFDVMDVPESKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN95</accession>
    <name>A0A392UN95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010847260">
        <property type="protein sequence ID" value="MCI73820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="5009" checksum="6AA29AB27D513895" modified="2018-12-05" version="1" fragment="single">MLKLTNPFLEEIKECQKRDWKLVEKLASINEGKEVDFGIDENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPZ0</accession>
    <name>A0A392UPZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010889290">
        <property type="protein sequence ID" value="MCI75713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6248" checksum="0087B4D81CFF2D9E" modified="2018-12-05" version="1" fragment="single">MIREKMRISQSRQRSYHDKRRKDLEFQEGDHIFLRVTSTTGVGRALKSRKLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ73</accession>
    <name>A0A392UZ73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011016202">
        <property type="protein sequence ID" value="MCI81318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5352" checksum="575D826D5C53753A" modified="2018-12-05" version="1" fragment="single">LSTAVEFASSLYVAFRPVPVALDTGDALIAAVATLPAAVATSEPTCYLQGPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4J2</accession>
    <name>A0A392V4J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription factor RF2b-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011058657">
        <property type="protein sequence ID" value="MCI83087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5730" checksum="3D33595261C314A3" modified="2018-12-05" version="1" fragment="single">TSMFGEIMDAKKAMPPDKLAELWTIDPKRAKRFSLILDLSSFENLSIFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V755</accession>
    <name>A0A392V755_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011039882">
        <property type="protein sequence ID" value="MCI82290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V755"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3471" checksum="94CECCD77E79CABB" modified="2018-12-05" version="1" fragment="single">PDVELKTEGMSILMEVKDGQLTLHVASEEEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAG8</accession>
    <name>A0A392VAG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011086332">
        <property type="protein sequence ID" value="MCI84249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4730" checksum="EF01F18D985DFEDE" modified="2018-12-05" version="1" fragment="single">MGKEEWPMAATVKPKEDRPMVDSMPLADDGVIVHLDRRHDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VH04</accession>
    <name>A0A392VH04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011147513">
        <property type="protein sequence ID" value="MCI86702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VH04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI86702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7109" checksum="BB92BD4E0F86ED4D" modified="2018-12-05" version="1" fragment="single">PKKDWKCFKCGDPNHKTDQCPKGVVCFNCKEADHKSNVYKKPRAAGGKVFTLDGGDVEADNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHB3</accession>
    <name>A0A392VHB3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011151845">
        <property type="protein sequence ID" value="MCI86863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHB3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5021" checksum="8F77F22B3D3E6B1D" modified="2018-12-05" version="1" fragment="single">MAGRTNAQIAEALATLAGIVARDHQPGQEDEARMERFMRHKPPTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VL80</accession>
    <name>A0A392VL80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011198588">
        <property type="protein sequence ID" value="MCI88647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VL80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7957" checksum="07CEE69CD2EFAC8B" modified="2018-12-05" version="1" fragment="single">VEEFYANALGYAEDNYTSTVRGKTISYAPDVIDEIFGFRRADYCWASQHRASAHTDEEYTEMLQTLALPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNC5</accession>
    <name>A0A392VNC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011218379">
        <property type="protein sequence ID" value="MCI89387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="55"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7070" checksum="7EA26B9F158ACF41" modified="2018-12-05" version="1" fragment="single">GVIITGEDIAKVSPLKERKDSCDSDEELPASEAKDTTGTEGASDAHVSKGKEPVVSDTAVVGTTAAATPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPB8</accession>
    <name>A0A392VPB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011238483">
        <property type="protein sequence ID" value="MCI90224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5298" checksum="96C71F31A689CE6F" modified="2018-12-05" version="1" fragment="single">APQVIAARHRSDDFKVNVEEDSMCRGHHVFDKGSNVLLVDFVEACVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTB5</accession>
    <name>A0A392VTB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011277808">
        <property type="protein sequence ID" value="MCI91638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4765" checksum="A28ECEC77EE7C994" modified="2018-12-05" version="1" fragment="single">SFKQQLKEVREEESALEKESSEEEREEAHDLEKDSTEKQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VX37</accession>
    <name>A0A392VX37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011275237">
        <property type="protein sequence ID" value="MCI91551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VX37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2344" checksum="E7BD930A0A97E527" modified="2018-12-05" version="1" fragment="single">MGATSAKDGWGTLKEEFQGSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYM5</accession>
    <name>A0A392VYM5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011325240">
        <property type="protein sequence ID" value="MCI93296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4001" checksum="B6502DCC5B25F2BD" modified="2018-12-05" version="1" fragment="single">MQGVAVRLKSQRSRGDSNAREASKGLVRRRFKARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W496</accession>
    <name>A0A392W496_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011387376">
        <property type="protein sequence ID" value="MCI95458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W496"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5780" checksum="5B7B68FCF87F6584" modified="2018-12-05" version="1" fragment="single">MGGGGGGGDLRPILDLRMAEPILLAIPVKRRPSSACEGGVGKTMDRRMEPKKSCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4Y3</accession>
    <name>A0A392W4Y3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011367063">
        <property type="protein sequence ID" value="MCI94809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4Y3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5569" checksum="EA78182CEE7CC730" modified="2018-12-05" version="1" fragment="single">MRKEKEVKRGKWNQKNSCTVPRLPPSPFTSRRADASTDTPSICHTLLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7B2</accession>
    <name>A0A392W7B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407769">
        <property type="protein sequence ID" value="MCI96186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7B2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7273" checksum="FDF56F98D0F81A57" modified="2018-12-05" version="1" fragment="single">KVGSETHAEQDVTPSGQTSDKSDDVPNAPASVMPENLENVIRETPEDVPATVNEKSPNKPTIDEENW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7I7</accession>
    <name>A0A392W7I7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011410011">
        <property type="protein sequence ID" value="MCI96266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7I7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="5740" checksum="487BF99F3B4089A6" modified="2018-12-05" version="1" fragment="single">DSPPPANPPAIVLTTTRLLSHLLASPPSLLGGISPVSGGQCAHLLRLQGIFASDHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N9Z4</accession>
    <name>A0A392N9Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative inactive leucine-rich repeat receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030913">
        <property type="protein sequence ID" value="MCH95868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N9Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000722">
        <property type="entry name" value="Leucine-rich repeat receptor-like protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000295">
        <property type="entry name" value="probable LRR receptor-like serine/threonine-protein kinase IRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050994">
        <property type="entry name" value="At_inactive_RLKs"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48010">
        <property type="entry name" value="OS05G0588300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48010:SF19">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13855">
        <property type="entry name" value="LRR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="122"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="11">
        <location>
            <begin position="200"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH95868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="291" mass="30916" checksum="6FF3A0670636B7CC" modified="2018-12-05" version="1" fragment="single">ILSKNKLSGSIPAAVAKLTNLKTVDISFNNLTGNLPKQLANLPNLLTFNLSHNNLEGELPAGGFFNTISPSSVSGNPFICGSVVNKKCPVKLPKPIVLNPNFSSPDLDPGSPTPTLGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTASRSPAALAFSAGDEFSRSPTTNANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAF1</accession>
    <name>A0A392NAF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032354">
        <property type="protein sequence ID" value="MCH96451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47481:SF30">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="257"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="257"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="294"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="308" mass="34853" checksum="320B012F55DBD75C" modified="2018-12-05" version="1" fragment="single">MASPNSPTASMASPEPHIDAGILNPPPLQTFRENEADHRKNDLNFTLRITEKLGEKNXXXXXXXXXXYINAHDLDDFLVSPQIPPRFLTETDRITATLNPNYRAWRKKDQMLLSWLQSTLSSEILTRFLGCHHTYELWGKILSYFHKQLRAKARQLRVELRSTTLENKTVKEYLLQIRLLIDNLVSIGDPLPLNQHLDVILEGLPTDFNSVISVIESKFDIIEMNEVEALLLAHEARLEKGKKRTLEDAASINIAQTHITDTPVQDQNTIQPSINNSVGPDPHYNPNFGNSRGRGNRNSRGRGGRNGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI04</accession>
    <name>A0A392NI04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038390">
        <property type="protein sequence ID" value="MCH98725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF55">
        <property type="entry name" value="DNA_RNA POLYMERASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="72"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="274" mass="31091" checksum="19A584A3DD063824" modified="2018-12-05" version="1" fragment="single">NEVEYLGHLISGKGVAADPKKIEDMVNWPSPKDLKGLRGFLGLTGYYRKFVRNYGKIAWPLTQLLKKDNFHWNSEAQQAFEALKQAMTTLPVLAMPNFNKEFVVETDASGKGIGAVLMQEGRPIAYMSQTLSDRAQQKSVYERELMAIVIAIQKWRPYLLGKHFQVHTDQKSLKFITEQKTMGEDQQRWISKLLGFDFDIKYKPGKENSVADALSRKMQYNTITTIQCETWAGLEDEVQNDDKLKGMVQALMVDPMSHPGYQLKGGSVTPKPVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMG2</accession>
    <name>A0A392NMG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">UDP-glycosyltransferase 88A1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040892">
        <property type="protein sequence ID" value="MCH99644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.2000:FF:000431">
        <property type="entry name" value="UDP-glycosyltransferase 90A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050481">
        <property type="entry name" value="UDP-glycosyltransf_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048:SF30">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH99644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12715" checksum="3516D9D9E744E2AC" modified="2018-12-05" version="1" fragment="single">VGGFVTHCGWNSVLEAITCGVSMIAWPLYAEQRLNRVVMVEEMKVAXXXXENEDGFVKASELEKRVREIMDTDRGRGKEVKERVLGAKNDAIAALSDGGSSRYGLNKLVELWRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NX00</accession>
    <name>A0A392NX00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Maternal effect embryo arrest protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053877">
        <property type="protein sequence ID" value="MCI03972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34686:SF1">
        <property type="entry name" value="MATERNAL EFFECT EMBRYO ARREST 59"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34686">
        <property type="entry name" value="MATERNAL EFFECT EMBRYO ARREST PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18849" checksum="06A422986A9C22D8" modified="2018-12-05" version="1" fragment="single">MVGQLTTTKPSRSDDVLDVQEQIRITNQIKAQFDAITPKRPIKPNRSEPETQQNDVDFTFSSHNNIPELQKLQSLQSNSQILPSSXXXXXAQDEFVETQYYNKLLSIDKQHHTTGSGFIKAVREGGEDGYEIQLPANGVDVGENQFRGYKSNPATNDWVPNLDHEHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2T9</accession>
    <name>A0A392P2T9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ty-3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059524">
        <property type="protein sequence ID" value="MCI05719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="20414" checksum="19097B05C7C32F35" modified="2018-12-05" version="1" fragment="single">MSSSYHPQSDGQTEVMNRTVEQYLRAFAHAKPSQWARFLPWAEFHYNTSVHSATGLTPFEVIFGXAPPSIPSYIAGTSSVDACDMVLSTRDEILALLRKNLTKAQAAMKSQADKHRRDVQYVVGDWVYVKLQPYRQVSLSGQRYHKLSKRFYGPYLITARVGPVAYKLALPSYSKIHNVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3Z3</accession>
    <name>A0A392P3Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061032">
        <property type="protein sequence ID" value="MCI06190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF450">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="15"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI06190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16054" checksum="65AC33A598A6C2FA" modified="2018-12-05" version="1" fragment="single">MAYVYRLSRSQQGDCARQVPIPVIEELLDELHGAKFFSKLDLKSGYHQVQVKEEDIHKTAFRTHEGHYEFLVMLFGLMNAPSTFQSLMNERENCVIPNSRESRSQVFVDYLGHLISESGVAVDPSKISSVTKWPIPKNVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4D4</accession>
    <name>A0A392P4D4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061440">
        <property type="protein sequence ID" value="MCI06310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000002">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="58"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI06310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="27463" checksum="58262715A7448720" modified="2018-12-05" version="1" fragment="single">MLLHTYAKVFEIPESLPPQREQDHAIPLKQGSDPVKVRPYRYPHTQKEQIEKMVQEMLQQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELYGAKYFSKLDLRSGYHQILVQPDDRHKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQTALRKFVLVFFDDILVYSSSWISHLSHLETVLQVLQHHQLYARLSKCSFGAMEVDYLGHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6Y0</accession>
    <name>A0A392P6Y0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Auxin response factor</fullName>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimers and heterodimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ARF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066595">
        <property type="protein sequence ID" value="MCI07767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009734">
        <property type="term" value="P:auxin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10017">
        <property type="entry name" value="B3_DNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010525">
        <property type="entry name" value="ARF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044835">
        <property type="entry name" value="ARF_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003340">
        <property type="entry name" value="B3_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384:SF160">
        <property type="entry name" value="AUXIN RESPONSE FACTOR 16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31384">
        <property type="entry name" value="AUXIN RESPONSE FACTOR 4-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06507">
        <property type="entry name" value="ARF_AD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02362">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50863">
        <property type="entry name" value="B3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0927">Auxin signaling pathway</keyword>
    <keyword evidence="4 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="TF-B3" evidence="9">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI07767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="227" mass="25038" checksum="D93C69076E0F5D9A" modified="2018-12-05" version="1" fragment="single">RRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCXXXXXXXXXXXXXXXXXXXXXXXXXXDGNLSGRVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSINDQFYGHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7K1</accession>
    <name>A0A392P7K1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-galactose transporter 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063370">
        <property type="protein sequence ID" value="MCI06875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11432" checksum="53AD2FB5037DEBEE" modified="2018-12-05" version="1" fragment="single">MAPSSKAEKKAAVDAAAWMFNVVTSVGIIIVNKALMGGYGFSFATTLTGLHFVTTTIMTVVLRMLGYVQPSHLPLSELLKFVFFANFSIVGMNVSLMWNSVGFYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEP7</accession>
    <name>A0A392PEP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076817">
        <property type="protein sequence ID" value="MCI10581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7954" checksum="8DB6586223A34B31" modified="2018-12-05" version="1">MEMRIRNHFPLSGTPELYPPDLQSPACLYPGDFVNAGQLKRRNSGRNRDRCKWHVDFVYGQHVPLSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFM9</accession>
    <name>A0A392PFM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fringe-related family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078135">
        <property type="protein sequence ID" value="MCI10913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006740">
        <property type="entry name" value="DUF604"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10811">
        <property type="entry name" value="FRINGE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04646">
        <property type="entry name" value="DUF604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="20200" checksum="C29DB11A5D1B7F2D" modified="2018-12-05" version="1" fragment="single">TKISHVLFGIGGSSATWNTRRFYSELWWRQNTTRGFVWLDKEPPINETWPETSPPYKVSADTSSFKYTCWYGSRSAIRIARILKESFELGLDNVRWFVMGDDDTVFFTDNLLTVLSKYDHNQMYYIGGNSESVEQDVIHFYTMAYGGGGFAISYPLAAELVKILDGCIDRYFSSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIW0</accession>
    <name>A0A392PIW0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Pectate lyase</fullName>
            <ecNumber evidence="5 11">4.2.2.2</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>Eliminative cleavage of (1-&gt;4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.</text>
            <dbReference type="EC" id="4.2.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="11">Binds 1 Ca(2+) ion. Required for its activity.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Secreted</location>
            <location evidence="2">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the polysaccharide lyase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.2" evidence="5 11"/>
    <dbReference type="EMBL" id="LXQA010077805">
        <property type="protein sequence ID" value="MCI10835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIW0"/>
    <dbReference type="UniPathway" id="UPA00545">
        <property type="reaction ID" value="UER00824"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030570">
        <property type="term" value="F:pectate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045490">
        <property type="term" value="P:pectin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018082">
        <property type="entry name" value="AmbAllergen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002022">
        <property type="entry name" value="Pec_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045032">
        <property type="entry name" value="PEL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683:SF184">
        <property type="entry name" value="PECTATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683">
        <property type="entry name" value="PECTATE LYASE 18-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00807">
        <property type="entry name" value="AMBALLERGEN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00656">
        <property type="entry name" value="Amb_all"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0106">Calcium</keyword>
    <keyword evidence="6" id="KW-0134">Cell wall</keyword>
    <keyword evidence="10 11 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0964">Secreted</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Pectate lyase" evidence="13">
        <location>
            <begin position="99"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="12">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI10835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="226" mass="24891" checksum="52CD2A74357DF57B" modified="2018-12-05" version="1" fragment="single">AMEEANDTRRELKEKHNGGPCESSNPIDNCWRCKADWAENRFRLAKCGKGFGRKAVGGLGGPIYVVTDESDNDMVNPKPGTLRYGAVQKGPLWITFQRSMIIRLNQELMVSSNKTIDGRGVNVQIRDGGGITMQFVNNVIIHGLHITNIKAKPGGMIRDSFDHVGLRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGITISNNHMTKHNDVSNFSFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJN3</accession>
    <name>A0A392PJN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081078">
        <property type="protein sequence ID" value="MCI11670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10140:FF:000007">
        <property type="entry name" value="Disease resistance protein (TIR-NBS-LRR class)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000157">
        <property type="entry name" value="TIR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009:SF106">
        <property type="entry name" value="TIR DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32009">
        <property type="entry name" value="TMV RESISTANCE PROTEIN N-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01582">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00255">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50104">
        <property type="entry name" value="TIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TIR" evidence="2">
        <location>
            <begin position="8"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI11670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="19008" checksum="8B8EAEE249BB7E26" modified="2018-12-05" version="1">MASLIDRFKYDVFLSFRGEDTRHDFIGNLWKALQDRGINTFIDDEELRKGEEITPSLIKAIEDSNMAIIVLSKNYASSSFCLQELYTILDCIKDKGRCVWPVFYEVDPSDVRKLKRSYGEAMVEHEMGSSSNIDLLQKWKNALHQVANLSGFHFKKDMDTATPLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQA7</accession>
    <name>A0A392PQA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088407">
        <property type="protein sequence ID" value="MCI13486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6128" checksum="4949BC3BD4A53872" modified="2018-12-05" version="1" fragment="single">MLRQSVLEGEEVSVKDTPTQEGIEPLLGLLYSNYRRYSPRRFRSPPPRGRTPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW78</accession>
    <name>A0A392PW78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NIPA-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095347">
        <property type="protein sequence ID" value="MCI15185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PW78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11347" checksum="A80109FD5B783692" modified="2018-12-05" version="1" fragment="single">LVASSEEAHNKDPRSFVKGVLIKITDILVKAKTSCALTLGFGEDTINASSVLVMPMMSSRMNGFRGNALERARILSMRNSGWSKIPLDEDATKLLESSTIVPPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4Z4</accession>
    <name>A0A392Q4Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114614">
        <property type="protein sequence ID" value="MCI19401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7936" checksum="73226015DC3403ED" modified="2018-12-05" version="1">MRVGRVDMELLFGVHGVEKEKQEGNQQKYGKKTGKEKVPEEDAEGAPIGRLRVPLRLQMTNIHIHKGDNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q682</accession>
    <name>A0A392Q682_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117129">
        <property type="protein sequence ID" value="MCI19903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q682"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13331" checksum="8DA34B8A0B0BE8A7" modified="2018-12-05" version="1" fragment="single">MQVELQALEATGTWILVNLPNHVKPIGCRWVYKVKHHADGTVERYKARLVAKGFNQIEGFDYFDTFSPVAKLTTVRMVIALASIHHWFLHQLDVNSTFLHGDLQEDVYMTPPPGVTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q728</accession>
    <name>A0A392Q728_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116086">
        <property type="protein sequence ID" value="MCI19697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q728"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22157">
        <property type="entry name" value="F-box_AtFBW1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050796">
        <property type="entry name" value="SCF_F-box_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672">
        <property type="entry name" value="BNACNNG10540D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31672:SF13">
        <property type="entry name" value="F-BOX PROTEIN CPR30-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00256">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="11969" checksum="78378E9689DCACB0" modified="2018-12-05" version="1" fragment="single">MSTLSFDLIEEILCRLPVKSLIQFQSVCKSWKLLISDDPKFVKKHLQISLSCPVQSRHHLIVNSTGKVGYWNSPISSIFNTMSNAIITQTKLSYPLSLNSISFKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7Q1</accession>
    <name>A0A392Q7Q1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118460">
        <property type="protein sequence ID" value="MCI20164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7Q1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4936" checksum="95A78BCB5D40D533" modified="2018-12-05" version="1" fragment="single">GSRSRARSRLGQTQVQVPDAEYAEDEPEAPLQPLLEIWHFQTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8G2</accession>
    <name>A0A392Q8G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aquaporin PIP11</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118512">
        <property type="protein sequence ID" value="MCI20172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="entry name" value="Glycerol uptake facilitator protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022357">
        <property type="entry name" value="MIP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45687">
        <property type="entry name" value="AQUAPORIN OR AQUAGLYCEROPORIN RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="Aquaporin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00221">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI20172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10093" checksum="25049023E3C91E6B" modified="2018-12-05" version="1" fragment="single">GHINPAVTFGLFLARKLSLTRALFYMVMQVLGAICGAGVVKGFEGKKRYGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9W5</accession>
    <name>A0A392Q9W5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122427">
        <property type="protein sequence ID" value="MCI20934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9W5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10402" checksum="58C7AFAD149E87E1" modified="2018-12-05" version="1">MPSGYSSLLKVIECSSLFQGCSVSSFGASVLAFVFFLRSGSPSMMVATKGLFPGSHSSSLLSSSLLLIAFIHLFGDGSLFGDSLLLVYLLEESYFILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QII6</accession>
    <name>A0A392QII6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein TOPLESS-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134210">
        <property type="protein sequence ID" value="MCI23115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QII6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027728">
        <property type="entry name" value="Topless_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083:SF52">
        <property type="entry name" value="TOPLESS-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44083">
        <property type="entry name" value="TOPLESS-RELATED PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7830" checksum="F7170C5A910AC209" modified="2018-12-05" version="1" fragment="single">MPFIFSGNGNEMTATASVPPQLWQPSSGILMTNDINDSSTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNP5</accession>
    <name>A0A392QNP5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase Ty1/copia-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010147434">
        <property type="protein sequence ID" value="MCI25482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="126" mass="14986" checksum="750965DEAE2DC77B" modified="2018-12-05" version="1" fragment="single">PKQKEVVLKRRERLRRKTFGMSWHYQLGRKLWPVSGVHCDWPLHQPDMKNVYFNSDLEEVYIDGLPCFDDKFGKEEGYTQGQTEHTLFTKFGSASNGMMIILMFYAHDIILTGDNVIEMERLRRTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQ23</accession>
    <name>A0A392QQ23_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">At2g29880-like C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010150278">
        <property type="protein sequence ID" value="MCI25934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQ23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055314">
        <property type="entry name" value="At2g29880-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056253">
        <property type="entry name" value="At2g29880-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47864:SF2">
        <property type="entry name" value="MYB_SANT-LIKE DNA-BINDING DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47864">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24769">
        <property type="entry name" value="At2g29880_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="At2g29880-like C-terminal" evidence="2">
        <location>
            <begin position="122"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI25934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="19645" checksum="8498C317FD43C11F" modified="2018-12-05" version="1" fragment="single">EPENRSVGIEEFSYDPNSDTFIAPDNYEPQYQYQPPSPNQPSPPSHPPLDSEVPLEKQNCHKRKRSEYAGTSTAVGINNQDNVLGNLVVGIGTIAVNFEKISNMMEKRENDRDRDRELEGNIWDVIKDIPNLNDITRFKTAELLNTKAKKDFFLKMTPEESSSWIKFKLGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQI3</accession>
    <name>A0A392QQI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein argonaute 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151250">
        <property type="protein sequence ID" value="MCI26094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Piwi" evidence="1">
        <location>
            <begin position="5"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7671" checksum="DC4A687AAEB509EA" modified="2018-12-05" version="1" fragment="single">MNSFLLTESQHSIPLVSNIPTLIIGMDVSHGSPGQSDVPSIAAVVSSRYWPQISRYRAAVRTQPSKVEMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRI2</accession>
    <name>A0A392QRI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative E3 ubiquitin-protein ligase HERC1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154158">
        <property type="protein sequence ID" value="MCI26579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="38"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI26579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12941" checksum="B7CF43D5F9E25EEC" modified="2018-12-05" version="1">MSRKRDNSHFSRHDFKRRRPLPEPAEEEKPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGLTVNSKKVLAFLYSLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUL9</accession>
    <name>A0A392QUL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158036">
        <property type="protein sequence ID" value="MCI27216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10140">
        <property type="entry name" value="Toll/interleukin-1 receptor homology (TIR) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035897">
        <property type="entry name" value="Toll_tir_struct_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52200">
        <property type="entry name" value="Toll/Interleukin receptor TIR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9366" checksum="89FBE85D49809958" modified="2018-12-05" version="1" fragment="single">QEFEKITECCLTTGGLIVLPVLYDGLNNYSAIGTSGEAFHDFVHRIWIKENETSSEEEDKFMSWVAAITKATTYSGLIDFXDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWN9</accession>
    <name>A0A392QWN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164592">
        <property type="protein sequence ID" value="MCI28264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="18882" checksum="FBE75C3492887E36" modified="2018-12-05" version="1" fragment="single">VEEWGLSLGEDACQFDDEPEPDSYQSDDEVEHCEPAASNNVDMVVDKLVEDLVTDMEEEEHPRRREKAEDEVKLRQPENVNNEEDQDNVPLQEGSSASRVPESKVVSATQSAALDGEPTMVINESDVSFSNRVSTSGERQRLKEKVHCSKRPLSCPPGATRSVISGPWSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QXW1</accession>
    <name>A0A392QXW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167538">
        <property type="protein sequence ID" value="MCI28712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QXW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002:SF709">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002">
        <property type="entry name" value="RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI28712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8837" checksum="2760340C85DE497D" modified="2018-12-05" version="1" fragment="single">MLDPIMQESYAPNEVEKCVQIGLLCVQENPDDRPTMGTVVSYLTNVSADMPFPMEPAFFMHGRTRRNSGYSAERESYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4S3</accession>
    <name>A0A392R4S3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010184709">
        <property type="protein sequence ID" value="MCI31104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1590" checksum="C41A54ED6C0129DD" modified="2018-12-05" version="1" fragment="single">DNARTEAAWSLLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5J2</accession>
    <name>A0A392R5J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Metal tolerance protein 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190693">
        <property type="protein sequence ID" value="MCI31861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7699" checksum="A831C8A10018348F" modified="2018-12-05" version="1" fragment="single">RRNRVTRRNSVNSLRSAFLSTLPDKVRSNLDSESPFDVDLSKATALSQGPLSLKIYRSRTLTRQHRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8M2</accession>
    <name>A0A392R8M2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010195688">
        <property type="protein sequence ID" value="MCI32452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8M2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4938" checksum="9B809E0BA500CE51" modified="2018-12-05" version="1" fragment="single">EHDVENIEDSDEDIRQDVGHDVVNIGITGRKKIGGQHVLSFPRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAF7</accession>
    <name>A0A392RAF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative signal peptidase I</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010201639">
        <property type="protein sequence ID" value="MCI33112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053283">
        <property type="entry name" value="TUNICAMYCIN_INDUCED_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34454:SF3">
        <property type="entry name" value="PEPTIDASE I, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34454">
        <property type="entry name" value="TUNICAMYCIN INDUCED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13409" checksum="632C942429761B80" modified="2018-12-05" version="1" fragment="single">SLLGHKILQDRLSGLIKANIKASAAVKFPLELEREIGNNATLNKLPDWRTRPSVERVWFEIMARVEESRLKPLSIKRVKPFIESDSVSWANLMSNMSYTKLRPVLLPPEALTLDVKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RE68</accession>
    <name>A0A392RE68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter F family member</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212795">
        <property type="protein sequence ID" value="MCI34324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RE68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="13"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7325" checksum="905CE90C4E03AE92" modified="2018-12-05" version="1" fragment="single">MVSEASKKKAAQKKAASAAKRGAKVPASAASSKNASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RH01</accession>
    <name>A0A392RH01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222308">
        <property type="protein sequence ID" value="MCI35324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RH01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4733" checksum="740B77D46058F4FA" modified="2018-12-05" version="1" fragment="single">MASSSSSFLGIDDTVDDFYFSVVPEDETDPDLPVTDDRYAEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJ25</accession>
    <name>A0A392RJ25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010232041">
        <property type="protein sequence ID" value="MCI36249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJ25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8439" checksum="F6327EFEA8DE5EDD" modified="2018-12-05" version="1" fragment="single">KDNTGVISGRSTPHGGPHGTINPNILPYKYAHTLIPRYPSPPHSKAGIVKLTTITNTLPLSETSPFRDRRLPAQTHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKS2</accession>
    <name>A0A392RKS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transducin/WD40 repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010242290">
        <property type="protein sequence ID" value="MCI37233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000127">
        <property type="term" value="C:transcription factor TFIIIC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004402">
        <property type="term" value="F:histone acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006384">
        <property type="term" value="P:transcription initiation at RNA polymerase III promoter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044230">
        <property type="entry name" value="GTF3C4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15496:SF2">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15496">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12058" checksum="8F1E2745219B63A2" modified="2018-12-05" version="1" fragment="single">VPSIRPCLQKNALAQANSITPNDELLEEVPENQLSPLISADEYAFRSAMLYSLVVSWSPLLRVASEFYPDPNTSASVSLLAVGGKSGKISFWRFYQPDCYTIEESKTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPN3</accession>
    <name>A0A392RPN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein EARLY FLOWERING 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010245347">
        <property type="protein sequence ID" value="MCI37506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8755" checksum="6886FEC280FDB26E" modified="2018-12-05" version="1" fragment="single">GTVTERNYVFPGHLTPETLIRQAGKHISHQSEGANLNASLAQLEQRKKADEDDFRVPVYVRSNTGQSNDKRLESFDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVS1</accession>
    <name>A0A392RVS1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4283 domain protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010270356">
        <property type="protein sequence ID" value="MCI39676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="121" mass="13606" checksum="78348542D418B2E1" modified="2018-12-05" version="1" fragment="single">VEFLRRISNIWFGSFKLRVNLAKFKKGAQPTTKVEVREGKKVVEHGGHVGRSFKEVVSTEESWRGKEDRVVEESGEAPANQVCLVEERGRVQTEVTEVVWEVEVDEASAAKLEGAYVGYLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZ28</accession>
    <name>A0A392RZ28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peroxisome biogenesis protein 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Peroxisome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peroxisomal targeting signal receptor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010286995">
        <property type="protein sequence ID" value="MCI41040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZ28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005778">
        <property type="term" value="C:peroxisomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005052">
        <property type="term" value="F:peroxisome matrix targeting signal-1 binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016560">
        <property type="term" value="P:protein import into peroxisome matrix, docking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024111">
        <property type="entry name" value="PEX5/PEX5L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10130:SF0">
        <property type="entry name" value="GH08708P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10130">
        <property type="entry name" value="PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13432">
        <property type="entry name" value="TPR_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 8" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="8">
        <location>
            <begin position="45"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI41040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9364" checksum="0A874EE67E4911A7" modified="2018-12-05" version="1" fragment="single">VFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S152</accession>
    <name>A0A392S152_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposon TX1 putative 149 kDa protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010306677">
        <property type="protein sequence ID" value="MCI42613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S152"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10837" checksum="7DB8BDA9BCDFF8D4" modified="2018-12-05" version="1" fragment="single">MYVLWKKLQRLQPILKNISKPLSDVKLKITQARDELLKAQMELGVDRLNAGKIDAVKHCNDDLLHWQEVEEKILQQKTKLEWLKLGDGNNRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4N3</accession>
    <name>A0A392S4N3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010310196">
        <property type="protein sequence ID" value="MCI42875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4N3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF55">
        <property type="entry name" value="DNA_RNA POLYMERASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="48"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10657" checksum="2D977BEDFE19207F" modified="2018-12-05" version="1" fragment="single">MIHWPVPTNVKQIKGFLGLTGFYRKFVKHCASIAAPLTDLLRKDVFQWHDQAQTSFDKLKQAMTEASVLAQPNFDEDFVLETDDSGLGMGAVLCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SC30</accession>
    <name>A0A392SC30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010348025">
        <property type="protein sequence ID" value="MCI45754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SC30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3078" checksum="C444398EFDC53426" modified="2018-12-05" version="1" fragment="single">DNSTVESVADKQVEVEPTTTAEDVADVDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEL3</accession>
    <name>A0A392SEL3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">2-oxoglutarate dehydrogenase mitochondrial-like-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010360201">
        <property type="protein sequence ID" value="MCI46634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEL3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045252">
        <property type="term" value="C:oxoglutarate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152:SF4">
        <property type="entry name" value="2-OXOADIPATE DEHYDROGENASE COMPLEX COMPONENT E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="2-OXOGLUTARATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Transketolase-like pyrimidine-binding" evidence="5">
        <location>
            <begin position="7"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI46634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8420" checksum="414D6266B740BC33" modified="2018-12-05" version="1" fragment="single">MIETGEDIDWGFAEALAFATLIVEGNHVRLSGQDVERGTFSHRHAVVHDQTTGDKYCPLDHVTMNQNEEMFTVSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SF57</accession>
    <name>A0A392SF57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010359062">
        <property type="protein sequence ID" value="MCI46545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SF57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6475" checksum="0E29314348AADA7A" modified="2018-12-05" version="1" fragment="single">MLVQRKKEEEHGGGDTHGWVPTSNYKLNSNYFVGLRECLPPSMLIIPLSLVRFKWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SG08</accession>
    <name>A0A392SG08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010364268">
        <property type="protein sequence ID" value="MCI46890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SG08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5349" checksum="A019A17AAB669D55" modified="2018-12-05" version="1">MKFVKEMTSGSICDTSPTSVEGGRGRVERHLVDLSDVDSLLVVVVDVVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGP2</accession>
    <name>A0A392SGP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Calcium-transporting ATPase plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010366239">
        <property type="protein sequence ID" value="MCI47026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF369">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI47026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5728" checksum="04970EAF6E86E807" modified="2018-12-05" version="1" fragment="single">MVTGDNVKTAKAIAVECGILGSFADATEPYIIEGKTFRALSDGQREEIVERIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHK2</accession>
    <name>A0A392SHK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010372231">
        <property type="protein sequence ID" value="MCI47420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8121" checksum="B3B4A5D26C6BC25F" modified="2018-12-05" version="1">MLSPGVNKIPPNLYSTFELGVDQEKSLNVSEVSSQVNSEPGVQSTSGTESPEAESLMVSIKNYKVKNTEEVRDCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKL6</accession>
    <name>A0A392SKL6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010387385">
        <property type="protein sequence ID" value="MCI48505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKL6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4619" checksum="9B63E00A5E0C5D89" modified="2018-12-05" version="1" fragment="single">VEPRPQACSGQDLVEFLQCLFGKKDPRHVEHWVKPGSRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPA2</accession>
    <name>A0A392SPA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010417403">
        <property type="protein sequence ID" value="MCI50499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6751" checksum="1FACBA238A79D851" modified="2018-12-05" version="1" fragment="single">KLHSRHSNLLHRNLCPVVVPVVGDDVCVVRVSDDAPVPSSIDALVPSRSKDAYANPPSSHASAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQU2</accession>
    <name>A0A392SQU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010428784">
        <property type="protein sequence ID" value="MCI51231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7239" checksum="D9944AAD8D2884FF" modified="2018-12-05" version="1" fragment="single">RRAGEDGTSRSQLGSVVHCAASSRASRVFIVHHARRAGQFGEKWNLLELSYILAIHTLGAEDSFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS16</accession>
    <name>A0A392SS16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010422589">
        <property type="protein sequence ID" value="MCI50825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="78"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9596" checksum="24A0CFE1A5278573" modified="2018-12-05" version="1" fragment="single">THFAGVIRHQQLLLQLKHHHHQQLLLRQPKHHQQLPPPPPVQKAPPPTQQPPPYCGITPPPPPSPCSADSIGCVTTNDDSSSSSTLCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSE5</accession>
    <name>A0A392SSE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010433985">
        <property type="protein sequence ID" value="MCI51579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3848" checksum="A16CDB341DFB72F7" modified="2018-12-05" version="1" fragment="single">MKCEETEKRNDTKKRSFFRCTYPPIRNSPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVK6</accession>
    <name>A0A392SVK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CGS1 mRNA stability protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010454067">
        <property type="protein sequence ID" value="MCI52863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002083">
        <property type="entry name" value="MATH/TRAF_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47242">
        <property type="entry name" value="TRAF-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47242:SF1">
        <property type="entry name" value="TRAF-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50144">
        <property type="entry name" value="MATH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MATH" evidence="1">
        <location>
            <begin position="59"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10415" checksum="347184FD6654C000" modified="2018-12-05" version="1" fragment="single">NDYMKMSDFVGSDSGFVVDDTAVFSTSFHVIKEFSSFSKNGAVIGGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZM3</accession>
    <name>A0A392SZM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010462084">
        <property type="protein sequence ID" value="MCI53366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5606" checksum="4374CBAC6A0B1B3E" modified="2018-12-05" version="1" fragment="single">MATSSQPLSRLMRAVEIRPISMAFFYVGCGYPRAIPYYYRPSQMDLGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2X4</accession>
    <name>A0A392T2X4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010480517">
        <property type="protein sequence ID" value="MCI54510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2X4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3203" checksum="899207C1B487F660" modified="2018-12-05" version="1" fragment="single">FGSGVVGGDEGVCGDEVLMWWCLDMALPVCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7X3</accession>
    <name>A0A392T7X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010524150">
        <property type="protein sequence ID" value="MCI57148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33825">
        <property type="entry name" value="CHITINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33825:SF5">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5228" checksum="5FDDF6EB55AE2ECD" modified="2018-12-05" version="1" fragment="single">MEISDLTNELSDLGQEITQGVKSSTRVVRSAEERLRRLTTMMPSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGV5</accession>
    <name>A0A392TGV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010567851">
        <property type="protein sequence ID" value="MCI59657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5576" checksum="413E8BECF3DFB20E" modified="2018-12-05" version="1" fragment="single">RASTMEGTPSTSGHLKLEKNRESPLKLRAETLLDEDQPITGSNVAVLRLNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI76</accession>
    <name>A0A392TI76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010589093">
        <property type="protein sequence ID" value="MCI60841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8917" checksum="C6E8964D80CAA11A" modified="2018-12-05" version="1" fragment="single">MLYPNHTKKNNIVHIAMETTMAGMVKMESKTEAESDPHHTIPVETIASGHPLHNELGKGESTHHHHDKKKSHPHSAKGPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMJ2</accession>
    <name>A0A392TMJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010603906">
        <property type="protein sequence ID" value="MCI61667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="10029" checksum="2D195FCB277D1328" modified="2018-12-05" version="1" fragment="single">MLRTDGEQIMFNVFEAMKRYDEDEPQCYRVEVVEVIEDKCKVQPPTLPVERVVVDSIEEQEAEWDHEIEIFLQQLDDDLEETPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQ18</accession>
    <name>A0A392TQ18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010633833">
        <property type="protein sequence ID" value="MCI63263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQ18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="7692" checksum="3A02475E5EEFF850" modified="2018-12-05" version="1" fragment="single">TTATATATTTTTATTTAAATATTTATTATTTTAATTTTAATTATATTAAATATTATTTTTTATTATAAATTAATATAATTATTAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQ56</accession>
    <name>A0A392TQ56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010616694">
        <property type="protein sequence ID" value="MCI62310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQ56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5820" checksum="ACF53BA66FEB0572" modified="2018-12-05" version="1" fragment="single">MKITMEELEEGLAELEMKEEKPCPDLEMTDIKKEDLWVRRWGRFHKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTL9</accession>
    <name>A0A392TTL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010654981">
        <property type="protein sequence ID" value="MCI64402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6864" checksum="7C73FBDD2E2AFEED" modified="2018-12-05" version="1" fragment="single">DHGDSEPADQGKKADENVVNIDDLESEERSVEKTPTPSIAKRLRSQTGKAVASVNTTVKPTKST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWH8</accession>
    <name>A0A392TWH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010677143">
        <property type="protein sequence ID" value="MCI65511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5221" checksum="9306F218F254F8A7" modified="2018-12-05" version="1" fragment="single">PYENGRLGLGMILRRDDESFEVAPTKVIKGSKDATLVEAMSLVEAIIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWJ3</accession>
    <name>A0A392TWJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010672357">
        <property type="protein sequence ID" value="MCI65258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3463" checksum="B685C2051D6383EA" modified="2018-12-05" version="1" fragment="single">MAEARKVYPEEVELLGRLPSSLCGGLCDISIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZE7</accession>
    <name>A0A392TZE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010692270">
        <property type="protein sequence ID" value="MCI66268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5093" checksum="BF01404C8BB2F141" modified="2018-12-05" version="1" fragment="single">MAPYRLSAAELEKLKEQLEELLEKRFVRPSISPWGAPVLLVKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0I9</accession>
    <name>A0A392U0I9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010705717">
        <property type="protein sequence ID" value="MCI66952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0I9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5043" checksum="CD03ACDBA514C357" modified="2018-12-05" version="1" fragment="single">TEVDSGDKSESKKKKKQKKKKSKSSEDKTAAASSTQPTVETEITEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4C7</accession>
    <name>A0A392U4C7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010727419">
        <property type="protein sequence ID" value="MCI67958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4C7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2432" checksum="5EC61F40D4843766" modified="2018-12-05" version="1" fragment="single">LEHLGFDAACHDLILGCFARTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8D9</accession>
    <name>A0A392U8D9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010753418">
        <property type="protein sequence ID" value="MCI69308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8D9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6505" checksum="CC3C669092F669EE" modified="2018-12-05" version="1" fragment="single">MAQTALADAMEMMANAMAQEAVIRTADREAQESRRGGEDELRLERFMNNKPPIFNGGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8J7</accession>
    <name>A0A392U8J7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010763450">
        <property type="protein sequence ID" value="MCI69813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8J7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7333" checksum="639A39B0906F1A2D" modified="2018-12-05" version="1" fragment="single">MKNVDDNLGCIEKEYSATKVRLEKEIKETKELSKDKEEKWARDRKTFTDEIAHLRAQVATHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9K7</accession>
    <name>A0A392U9K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010736161">
        <property type="protein sequence ID" value="MCI68415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8311" checksum="B5A25B6805A62ED7" modified="2018-12-05" version="1" fragment="single">ISYAQDVIDAIFGFRPEEHCSVLQRRAEGQTEDEFARMLHELALPGKDWHYNSSGECLCLQATEMEPIAKAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBU1</accession>
    <name>A0A392UBU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010751030">
        <property type="protein sequence ID" value="MCI69195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5547" checksum="72228B995AEB6AE5" modified="2018-12-05" version="1" fragment="single">MELKGKGDSAHVVEDSLDEGYKHAEALVVSSWEPEESRTQNSSDARDGGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC05</accession>
    <name>A0A392UC05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010788624">
        <property type="protein sequence ID" value="MCI71053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4353" checksum="F7B9A6E3372CA167" modified="2018-12-05" version="1" fragment="single">MLLSSSQVAYSPARPPQTTFTDEISLFLSFFASRPSMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC56</accession>
    <name>A0A392UC56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010789802">
        <property type="protein sequence ID" value="MCI71111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3025" checksum="CA1486B92CC67E4E" modified="2018-12-05" version="1" fragment="single">MDSSDINKDQAPPAPEDPEKKKKKAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UD95</accession>
    <name>A0A392UD95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UDP-glycosyltransferase 87A1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010787764">
        <property type="protein sequence ID" value="MCI71018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UD95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045:SF22">
        <property type="entry name" value="UDP-GLUCURONOSYL_UDP-GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045">
        <property type="entry name" value="UDP-GLYCOSYLTRANSFERASE 72B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7693" checksum="D4996B544A3A6F14" modified="2018-12-05" version="1" fragment="single">MDQPLNSKYIVEDWKVGWRVEKEVKENVMIRRDEIARLVRRFMDLDDDEAKEMRKRARELQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFG7</accession>
    <name>A0A392UFG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010814816">
        <property type="protein sequence ID" value="MCI72289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4863" checksum="B3D2A72FC711C8FE" modified="2018-12-05" version="1">MAKSGETSKASLAWRGSVSPGNIRSGFQAQLRILTLTMAKSIPNSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJQ6</accession>
    <name>A0A392UJQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010846403">
        <property type="protein sequence ID" value="MCI73781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010968943">
        <property type="protein sequence ID" value="MCI79222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA011386105">
        <property type="protein sequence ID" value="MCI95414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3366" checksum="D5A1D73D8F2E3319" modified="2018-12-05" version="1" fragment="single">MAGRTNAQIAEALATLAGIMARDHQPGREDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKA6</accession>
    <name>A0A392UKA6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010848507">
        <property type="protein sequence ID" value="MCI73882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="63" mass="7075" checksum="97422DB8F875B0E0" modified="2018-12-05" version="1" fragment="single">MAAARTDTQIVEALATLTNIVARDNPPGREDEMRLERFMKQSPPTFTGGYDPDGAHKWLEEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKG9</accession>
    <name>A0A392UKG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010828339">
        <property type="protein sequence ID" value="MCI72946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5137" checksum="9EA1B894FFE8EEEA" modified="2018-12-05" version="1" fragment="single">MNSITVRNVQERVLLAEALQWEGLMRMTAGFRGAYGRFLEVTAHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UM73</accession>
    <name>A0A392UM73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010865304">
        <property type="protein sequence ID" value="MCI74661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UM73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4442" checksum="FC37940A39DD5E25" modified="2018-12-05" version="1" fragment="single">SQASTIKESLKFSPPISIDVEFGLGSDKVAATEAKIEALTYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN66</accession>
    <name>A0A392UN66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010870352">
        <property type="protein sequence ID" value="MCI74892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="4"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI74892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7139" checksum="9BBE8028E30AC203" modified="2018-12-05" version="1" fragment="single">QLYLAMLENAMSSALVQELEDEEKPVYFVSRVFQGAEVRYQKIEKLALAVVVTSRRPRQYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQJ2</accession>
    <name>A0A392UQJ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010894019">
        <property type="protein sequence ID" value="MCI75923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4305" checksum="2DD16E2503CEC329" modified="2018-12-05" version="1" fragment="single">MEFLGLSQGTMSVVEYAAKFEDQSRYCPHYNAAENETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTK1</accession>
    <name>A0A392UTK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010972033">
        <property type="protein sequence ID" value="MCI79358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7276" checksum="BBD6FA97607D2185" modified="2018-12-05" version="1">MARVDRTSIERVMVILVGCMFWAALLPYECSLDELGEHVFALFICSHAALLCAASRSTVHRVDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0L2</accession>
    <name>A0A392V0L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011006896">
        <property type="protein sequence ID" value="MCI80942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6552" checksum="F648489DA81E5A6B" modified="2018-12-05" version="1" fragment="single">MKPVDATSKTKGSKKPPRQSIKRKRFKCKIKKEEPKSDPKDMCSWRVDHKDAPLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8Q5</accession>
    <name>A0A392V8Q5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011076404">
        <property type="protein sequence ID" value="MCI83832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8Q5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3397" checksum="C26973D40F9B0A16" modified="2018-12-05" version="1" fragment="single">MAEGNDANAVLMMATTCYESVKNEEWYLDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V923</accession>
    <name>A0A392V923_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011099789">
        <property type="protein sequence ID" value="MCI84806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V923"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6273" checksum="810E04847B5EB2AC" modified="2018-12-05" version="1" fragment="single">HLQDAENEIAALQDVIQQQQGQNNQLHLDILGVQDEQAADQAQLNAIIQQEIQTIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGF0</accession>
    <name>A0A392VGF0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA/RNA polymerase superfamily protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011143493">
        <property type="protein sequence ID" value="MCI86543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGF0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="62" mass="7276" checksum="6ADAAE8FB05D8092" modified="2018-12-05" version="1" fragment="single">MLKLTNPFLEEVKECQKRDQKLMEKLVLIREGKETDSGIDENGVIRYRGRVCVPDVPELRKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGT1</accession>
    <name>A0A392VGT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011146990">
        <property type="protein sequence ID" value="MCI86673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3561" checksum="3BB214383C502DBC" modified="2018-12-05" version="1" fragment="single">GHLRAAQFKRKKVDILLRDAPGAERMARGAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJ05</accession>
    <name>A0A392VJ05_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011166310">
        <property type="protein sequence ID" value="MCI87453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJ05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="3"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6709" checksum="3D86E19B3023F3D7" modified="2018-12-05" version="1" fragment="single">MGQYVPDSFAFQMGRELGELKQGKTSVAEYTRKFNGLVCFSSDDTGALSERAKMNKYRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLP5</accession>
    <name>A0A392VLP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011163220">
        <property type="protein sequence ID" value="MCI87330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4774" checksum="DD4472A5ABA83935" modified="2018-12-05" version="1" fragment="single">RSGIMAAARTNAQIAQALAAWTTLVARDNDPGRESEKRLERFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VU45</accession>
    <name>A0A392VU45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011260225">
        <property type="protein sequence ID" value="MCI91013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VU45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6618" checksum="4126C3511EB7C346" modified="2018-12-05" version="1" fragment="single">MYKVRFYNEAPIIIVERRDESVVCTVVEEGLDGKPWFYDIKWYLKKQEYPENASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VU53</accession>
    <name>A0A392VU53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011259380">
        <property type="protein sequence ID" value="MCI90979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VU53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="3853" checksum="780279DD13D97609" modified="2018-12-05" version="1" fragment="single">EAFPSGPTETPCEAVPPFATGIVMGIDCGGEELSASEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VX74</accession>
    <name>A0A392VX74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011268070">
        <property type="protein sequence ID" value="MCI91285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VX74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3794" checksum="AB130C3B96D52DEA" modified="2018-12-05" version="1">MLARCTALLMPFARCAGIPARFAAFPRVAQRSADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W081</accession>
    <name>A0A392W081_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011345500">
        <property type="protein sequence ID" value="MCI94038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W081"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6768" checksum="92CFD2186A0C8D85" modified="2018-12-05" version="1" fragment="single">KEEYTATKDKLGKEIEDLKTSCDGEIAKLKKEYEDKLKKVKENYDAETKKLKEDAKTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0F6</accession>
    <name>A0A392W0F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011299486">
        <property type="protein sequence ID" value="MCI92385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2877" checksum="B0B208046E2170FA" modified="2018-12-05" version="1" fragment="single">MAAARTYAQMVEALATLANIVARDNDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2B5</accession>
    <name>A0A392W2B5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011311006">
        <property type="protein sequence ID" value="MCI92810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2B5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5139" checksum="3B3EE442D4731278" modified="2018-12-05" version="1" fragment="single">RIGFSVGAHFVVVDVDVRASPMVMVLEALDRPVANLTKDCLPSPIGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3W1</accession>
    <name>A0A392W3W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011326496">
        <property type="protein sequence ID" value="MCI93340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2661" checksum="A30B5336A3988173" modified="2018-12-05" version="1" fragment="single">MFTSRVLVHEFFVEIGVPHDGMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9P5</accession>
    <name>A0A392W9P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011390971">
        <property type="protein sequence ID" value="MCI95575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2238" checksum="FA93E8B4B60DE016" modified="2018-12-05" version="1" fragment="single">MAQRALADAMELMANAMAQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA19</accession>
    <name>A0A392WA19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011444942">
        <property type="protein sequence ID" value="MCI97484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4436" checksum="E27FDBABA34DB780" modified="2018-12-05" version="1" fragment="single">MAVSLSVVVQGKEETLEEYVEHFTREVVEVKGGVEKSLTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MVU7</accession>
    <name>A0A392MVU7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">dolichyl-diphosphooligosaccharide--protein glycotransferase</fullName>
            <ecNumber evidence="6">2.4.99.18</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="18 19">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">cv. 10/8</strain>
            <tissue evidence="18">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>a di-trans,poly-cis-dolichyl diphosphooligosaccharide + L-asparaginyl-[protein] = N(4)-(oligosaccharide-(1-&gt;4)-N-acetyl-beta-D-glucosaminyl-(1-&gt;4)-N-acetyl-beta-D-glucosaminyl)-L-asparaginyl-[protein] + a di-trans,poly-cis-dolichyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22980"/>
            <dbReference type="Rhea" id="RHEA-COMP:12804"/>
            <dbReference type="Rhea" id="RHEA-COMP:12805"/>
            <dbReference type="Rhea" id="RHEA-COMP:19506"/>
            <dbReference type="Rhea" id="RHEA-COMP:19509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:50347"/>
            <dbReference type="ChEBI" id="CHEBI:57497"/>
            <dbReference type="ChEBI" id="CHEBI:57570"/>
            <dbReference type="ChEBI" id="CHEBI:132529"/>
            <dbReference type="EC" id="2.4.99.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endomembrane system</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the STT3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.18" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010020405">
        <property type="protein sequence ID" value="MCH91423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MVU7"/>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004579">
        <property type="term" value="F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003674">
        <property type="entry name" value="Oligo_trans_STT3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048307">
        <property type="entry name" value="STT3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13872">
        <property type="entry name" value="DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13872:SF48">
        <property type="entry name" value="DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02516">
        <property type="entry name" value="STT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0464">Manganese</keyword>
    <keyword evidence="13 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="97"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Oligosaccharyl transferase STT3 N-terminal" evidence="17">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="18">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF02516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="MCH91423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="20866" checksum="27531570715FCDAA" modified="2018-12-05" version="1" fragment="single">VFILIHVVALVYYIKGILSPKMFKVAVALVVSGGLAVCFAMIAVLVAMVASSPTMGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFSPLSDASSFVILYIVTSVYFSGVMVRLMLVLAPAACILSGIALSQAFDVFTRSIKLQLPSLSVDSPVDVSIYSLIVIRFDIAFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZL2</accession>
    <name>A0A392MZL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023417">
        <property type="protein sequence ID" value="MCH92772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053258">
        <property type="entry name" value="Ca-permeable_cation_channel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34115">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34115:SF17">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19648" checksum="6F444583354B8977" modified="2018-12-05" version="1">MTAQTAYTILMRLQLASIAIMYQGSNTNPFQQSSLTTWLFHTALFIHVVVTMANMNLPTTMVIFHFFGLVGCEILLWILIPESWIWSITNLFILLVTSFCFFNFIDYITKLILPAQSNIPIAHPNLFILLVTSFCFFNFMDYITKLILPAQSNIPIAHPPNPEPQQEASASQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N530</accession>
    <name>A0A392N530_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025312">
        <property type="protein sequence ID" value="MCH93594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N530"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021434">
        <property type="entry name" value="DUF3082"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35733">
        <property type="entry name" value="OS02G0307800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35733:SF1">
        <property type="entry name" value="OS02G0307800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11282">
        <property type="entry name" value="DUF3082"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="7813" checksum="5EB766162C04E126" modified="2018-12-05" version="1" fragment="single">MIVAAMSSGEKSVKEEALETLKAMGTASIDTAKGPPSPVQALLGAISAGIISLILYKFATIIEAGLSRQTISDDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5H7</accession>
    <name>A0A392N5H7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Scarecrow-like protein 14-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028272">
        <property type="protein sequence ID" value="MCH94832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5H7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="86"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="145"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Leucine repeat I (LRI)" evidence="5">
        <location>
            <begin position="187"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="VHIID" evidence="5">
        <location>
            <begin position="266"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="VHIID" evidence="5">
        <location>
            <begin position="297"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="86"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="145"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCH94832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="353" mass="39026" checksum="9C257DAB430C8E6C" modified="2018-12-05" version="1" fragment="single">MNGYGTTTTSSSNFGVTNSGVLVSSRDGFPDSNLLSKSESVLQFERGVEEANKFLPKANPLVIDLENNHPFIPSFRKVPREVVVKTESSEREHFSVESRGRKNHERGDETDLQDERSNKQSAVYTDDSEISELFDKVLLGTGCRKDGAPKEEKPNEQVTGVQQKEEANNSGGGKSRAKKQGNKKGVVDLRTMLILCAQSISSDDRATAKELLKQIRQHSSPLGDGSQRLAHCFANAIEARLAGTGTQIYTALYSKRNSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGFRPAERVQETGLRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5J2</accession>
    <name>A0A392N5J2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026871">
        <property type="protein sequence ID" value="MCH94248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="58"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="241"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="340" mass="39322" checksum="38DABC3F0A4CC930" modified="2018-12-05" version="1">MAPKRIRVAGSSSRRNTFLSPACAEHYKLIEKKGVIQERSIDFPEITFLPEMEATARHYRWMDFNAMIGDCNLSWVREFYANAVAYLEDDFTTIVRGVQVSYAPAVIDAAFGFRQAEHCWANQQRHSDHTDEEYDQMLHTLALPGKDWHYTAAGARARLNITDMMPAAKGWAKWLVRNFESTSHETEIIMSRCHVIYDIMMREPIWIRGVLLEEDTYMITGPERPLGRAYFQRAMRELEVAQAAAAAPPPPSPEPQQQEQQQPPPYVPQQHQFXDYELGMAASTYEQYVRMDWGLPHFSPQLMAAVQEYLGHTLIPPYNHQYPEQDDLTGHFQRQSTRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK14</accession>
    <name>A0A392NK14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phospholipid-transporting ATPase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041177">
        <property type="protein sequence ID" value="MCH99741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NK14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140326">
        <property type="term" value="F:ATPase-coupled intramembrane lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045332">
        <property type="term" value="P:phospholipid translocation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092:SF148">
        <property type="entry name" value="PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092">
        <property type="entry name" value="PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17443" checksum="A5C9AB231F02257A" modified="2018-12-05" version="1" fragment="single">NDNESNISIKHPTRSHLSVYSSQGFRTLEIASRDLSDAELLWQSMYEEVYLEGVPEAIESLLQAGVNVWILLTGDKQEAAISFSVSCKLLNANMQKIIKGTSEVECRNLLADAREKIGVRSSRGEHHNLKHKTNARHGDLDIPNDTKSSSIQVQVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKH8</accession>
    <name>A0A392NKH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043083">
        <property type="protein sequence ID" value="MCI00397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11562" checksum="0976E4C5FF017CC6" modified="2018-12-05" version="1" fragment="single">MFIAFYTPGACTYFPISLSLSLSLAHSLIFDTEWSRFPGLVAKELMSDRPDKMDHPSLSDDWRRSRRRRASRPHNHLEAQGLKEIGQTYFVETSRVFRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMM3</accession>
    <name>A0A392NMM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter A family member 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045271">
        <property type="protein sequence ID" value="MCI01111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005319">
        <property type="term" value="F:lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026082">
        <property type="entry name" value="ABCA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19229:SF154">
        <property type="entry name" value="ABC TRANSPORTER A FAMILY MEMBER 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19229">
        <property type="entry name" value="ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="16578" checksum="40146F9B9F983C54" modified="2018-12-05" version="1" fragment="single">MFFAFHWIELRCAQALRLWRNSSSEVNNELYKGYRKGNTERKINEIVAGYDFLNSNENIFNVSIWYNATYKNDTGFDTIALARIPRSVNLVSDAYLQFLLGPGTKMLFEFVKEMPKPATTIKFDLASLLGALFFTWVILQLFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPG0</accession>
    <name>A0A392NPG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044936">
        <property type="protein sequence ID" value="MCI01009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF40">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RGA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="300" mass="34101" checksum="081612E42CFC9A66" modified="2018-12-05" version="1" fragment="single">SLKSIPPLKLASLEKLDLSNCDNLESFSPVVDGFMDKLKFLSVMYCRKLRSIPPLKLAFLEQLDLSYCDSLENFPLVVDGLLEKLRIXRLISCNRIQSIPPLKFASLEELNLSYCDNLESFPHVIDGLLGKLKFFNVRDCYKLKSIPPLKLDLLEQLVFSYCNSLESFPPIVNGQLGKLKILRVTNCSNIKSIPPLKLASLEELNLSYCDNLESFPDFXDGFPSNLKVLSVRYCRKLKSIPPLKFALLEVLDLSYCDSLESFPKILSKMENIRELPSSIVMMQELAELIIEDGGWLFPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4A9</accession>
    <name>A0A392P4A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061391">
        <property type="protein sequence ID" value="MCI06290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15169" checksum="DE2A2D18463DD5F5" modified="2018-12-05" version="1">MTSSHSPSPXTNHLVPFTKKKSQKHVKVKAFFFFAFKPDQPRLHHSTVPSPSSFTALPLSSFLCSHRRVSVHATNNGSSSPPRHRALSVLAVLCSDADKIAFAIVFQFTTFPIRDLFAPLFVISHHVFVSPFLTQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCC7</accession>
    <name>A0A392PCC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073974">
        <property type="protein sequence ID" value="MCI09811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="143"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="165"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="226"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28310" checksum="83AE77DC0416FCCF" modified="2018-12-05" version="1" fragment="single">RTSYNRLRSFNSYPDLRQESLWVAARDERWRFSDDTHVNGYRGLDLNFKEEKEEASTKDIEVDTSLKGKMKQALEPGLDLNFKQEKEDSTKNIEVDTPLKGKNKKKQAIEMHESETIEKAKNNKDAERKNKKASSTKDDKTYRSLRGKKKHRHKSVENFQSFLNSEPPTTMPSSSSFHDLFSLKKNRQKKLKSVSPPQDHVSSMLVSKTKDEDFFVITGNESPLISIPPPPPPPPPFKMPAWKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFK5</accession>
    <name>A0A392PFK5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">Chlorophyll a-b binding protein, chloroplastic</fullName>
        </recommendedName>
    </protein>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.</text>
    </comment>
    <comment type="function">
        <text evidence="18">The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 18">Plastid</location>
            <location evidence="2 18">Chloroplast thylakoid membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 18">Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077974">
        <property type="protein sequence ID" value="MCI10878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009522">
        <property type="term" value="C:photosystem I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009523">
        <property type="term" value="C:photosystem II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016168">
        <property type="term" value="F:chlorophyll binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009765">
        <property type="term" value="P:photosynthesis, light harvesting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3460.10">
        <property type="entry name" value="Chlorophyll a/b binding protein domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001344">
        <property type="entry name" value="Chloro_AB-bd_pln"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022796">
        <property type="entry name" value="Chloroa_b-bind"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21649">
        <property type="entry name" value="CHLOROPHYLL A/B BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00504">
        <property type="entry name" value="Chloroa_b-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103511">
        <property type="entry name" value="Chlorophyll a-b binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 17 18" id="KW-0148">Chlorophyll</keyword>
    <keyword evidence="5 18" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="14 18" id="KW-0157">Chromophore</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6 18" id="KW-0602">Photosynthesis</keyword>
    <keyword evidence="11 18" id="KW-0603">Photosystem I</keyword>
    <keyword evidence="18" id="KW-0604">Photosystem II</keyword>
    <keyword evidence="8 18" id="KW-0934">Plastid</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15 18" id="KW-0793">Thylakoid</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="binding site" evidence="17">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>chlorophyll a</name>
            <dbReference type="ChEBI" id="CHEBI:58416"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR601344-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU363080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCI10878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13390" checksum="A219A0EEC6575030" modified="2018-12-05" version="1">MECSSRACTLQMGNVRCSRNFHSRIPNKAWYLEHTFMLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAVSSTNTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG28</accession>
    <name>A0A392PG28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein YeeZ-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076222">
        <property type="protein sequence ID" value="MCI10430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7440" checksum="2E100B8C5A2C184F" modified="2018-12-05" version="1" fragment="single">VSILQLLRNYTHFLVSVPPAVGIGDPMLQHEELIRSYLVNGDLRWLCYLSSTSVYGDCDGELVDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLU0</accession>
    <name>A0A392PLU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084297">
        <property type="protein sequence ID" value="MCI12469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="27173" checksum="7276217E46D67969" modified="2018-12-05" version="1" fragment="single">MYALRQDTCFVTEFFTKLKGLWEELELYRPVPDCTCTFRCMCDAMRNAKKFKEEDLVLLFLTGLNDHYAMVRPQILLMEPFPQSNAAFGLVIQHESLNGLDNMEDQSDNISASINFARKPYGKNHASSKTDKMCTYCHKTNHIVDNCFKKHGFPPGYRFKDGTIAGNKHQGQASANYVDSEDNGTNNGLDSRVATFSSKEYQALMALLRSNTRNAGEGSSQVNNITKVIASSYCNDKQGTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRJ2</accession>
    <name>A0A392PRJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090838">
        <property type="protein sequence ID" value="MCI14070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34023:SF4">
        <property type="entry name" value="RNASE H TYPE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10991" checksum="0A82EADD99B252F5" modified="2018-12-05" version="1">MGFQKVELNVDSEVVVRVIKSGKTESAVGVSLTKEIARLMAMEWEVEVTHMYRVANRCADVLANEGCTMNFNMKIYEECPEHLNELVLADSLGLTTPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSR3</accession>
    <name>A0A392PSR3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="17">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010092810">
        <property type="protein sequence ID" value="MCI14539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001023">
        <property type="entry name" value="Os07g0541700 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052422">
        <property type="entry name" value="Auxin_Ser/Thr_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47986">
        <property type="entry name" value="OSJNBA0070M12.3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47986:SF6">
        <property type="entry name" value="TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="10 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 19" id="KW-0675">Receptor</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="18">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="19">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCI14539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11196" checksum="CA420DAEDC51EDDE" modified="2018-12-05" version="1" fragment="single">PQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PV99</accession>
    <name>A0A392PV99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095582">
        <property type="protein sequence ID" value="MCI15236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PV99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF55">
        <property type="entry name" value="DNA_RNA POLYMERASES SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="58"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="27011" checksum="179CCFBA923DC413" modified="2018-12-05" version="1" fragment="single">VAVDPNKVKSVIQWPVPKNVKGVRGFLGLTGYYRKFIRDYGKIAKALTELTKKDSFKWGTEAQCAFDELKRRLTTAPVLSLPDFTKEFVIECDASGSGLGAILMQDKKPIAYFSKALGVRNLTKSAYEKELMAVVLAIQHWRPYLLGRRFTVYTDQKSLKQLMQQRIVTVEQQNWAAKLLGYDFEIVYKQGKLNKGADALSRIYEGTELNSILSYVQWDQEQIVQWEVSQDEKLQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVD9</accession>
    <name>A0A392PVD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chromodomain helicase DNA binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097249">
        <property type="protein sequence ID" value="MCI15627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="12"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="24582" checksum="58E32C2F0C8A3EEA" modified="2018-12-05" version="1" fragment="single">VGRKPKKRPRVEQSGESTSSSGNVSDDLVAGSEFSGILNGDDSSGGNDGDVVGNVNGTSGSLEKLGNGNGFGLGEILNLNENEGVSDNNDDNNNGICVKDGIDXXXXXXXXXXXXXXXXXXXXXXXXXXAGSVERRDCIDLNLDVSVEEGVNLDVNSGGEILRREFDLNVGVCEEVKEAQGCADGNGYSEVDGEMGEVRDEESDVKHIYMEADGGCGNLNCASDAIKLEELHVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3K5</accession>
    <name>A0A392Q3K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112693">
        <property type="protein sequence ID" value="MCI18983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3K5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="19226" checksum="3D556869E42726B7" modified="2018-12-05" version="1" fragment="single">MRLLKEAVKVPNQPLLVKKPSGPLPEDPPMLFDNEPKDVILEYMRLMKTEGITITGDDIFHVPTEDKKRKRIVKIKQEKASEDKAKAVEATKFENKTATEKSKGKSTKKQKSERKKAPRVQKRTIVQNEESEEIQEEKPMFKRKRTRQTDPDQAQPEPEGMDTEADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6I7</accession>
    <name>A0A392Q6I7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">E3 ubiquitin-protein ligase RNF4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114951">
        <property type="protein sequence ID" value="MCI19469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6I7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12563" checksum="C6F9EB6F20855560" modified="2018-12-05" version="1" fragment="single">NIGSNMSSRTGRVTAVRGYSRRRKVGLDVDLNLPAGEIPIVENPAGENREQEGPSIQLGLQEVEVHANPQQPIVLVEAPMIDVEEIDDDVIESSPRAFAEVYISFCRFLVSIVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6Q8</accession>
    <name>A0A392Q6Q8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Elongation factor 1-alpha</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112475">
        <property type="protein sequence ID" value="MCI18935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6Q8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008906">
        <property type="entry name" value="HATC_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272">
        <property type="entry name" value="BED FINGER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23272:SF184">
        <property type="entry name" value="OS03G0311250 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05699">
        <property type="entry name" value="Dimer_Tnp_hAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="HAT C-terminal dimerisation" evidence="2">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10174" checksum="4F54238BE2EE63E3" modified="2018-12-05" version="1" fragment="single">VLAIPVTTVASESAFSTGGRVVSDHRTCLMPKMVEALVCTQDWLKGASLSLFSNEDIDEIHRLEQVSVVFPAVKLLIFAAIVTSVLFLFWGCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAC5</accession>
    <name>A0A392QAC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vam6/Vps39-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121081">
        <property type="protein sequence ID" value="MCI20680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QAC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006914">
        <property type="term" value="P:autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034058">
        <property type="term" value="P:endosomal vesicle fusion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032914">
        <property type="entry name" value="Vam6/VPS39/TRAP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12894">
        <property type="entry name" value="CNH DOMAIN CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12894:SF27">
        <property type="entry name" value="TRANSFORMING GROWTH FACTOR-BETA RECEPTOR-ASSOCIATED PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6745" checksum="DB35872675081BDB" modified="2018-12-05" version="1" fragment="single">MLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QB30</accession>
    <name>A0A392QB30_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">peroxidase</fullName>
            <ecNumber evidence="3">1.11.1.7</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a phenolic donor + H2O2 = 2 a phenolic radical donor + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:56136"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:139520"/>
            <dbReference type="ChEBI" id="CHEBI:139521"/>
            <dbReference type="EC" id="1.11.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="10">Binds 2 calcium ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the peroxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.7" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010123117">
        <property type="protein sequence ID" value="MCI21067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QB30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140825">
        <property type="term" value="F:lactoperoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.520.10:FF:000028">
        <property type="entry name" value="Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002016">
        <property type="entry name" value="Haem_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010255">
        <property type="entry name" value="Haem_peroxidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000823">
        <property type="entry name" value="Peroxidase_pln"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31235">
        <property type="entry name" value="PEROXIDASE 25-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00141">
        <property type="entry name" value="peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00458">
        <property type="entry name" value="PEROXIDASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00461">
        <property type="entry name" value="PLPEROXIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48113">
        <property type="entry name" value="Heme-dependent peroxidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50873">
        <property type="entry name" value="PEROXIDASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 13" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plant heme peroxidase family profile" evidence="12">
        <location>
            <begin position="16"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR600823-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI21067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12487" checksum="F9316A9382E23503" modified="2018-12-05" version="1" fragment="single">MRVYYVKIDELTLSILIQGCDGSILLNSTNKQAEKDAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADIIALSARDSIAATGGPYWKVPTGRRDGVISNLVEARNNIPAPFHNIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QD71</accession>
    <name>A0A392QD71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator ATRX-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127020">
        <property type="protein sequence ID" value="MCI21829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QD71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36810">
        <property type="entry name" value="BNACNNG47150D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36810:SF1">
        <property type="entry name" value="OS05G0232200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4485" checksum="B763984E6A4D41F5" modified="2018-12-05" version="1" fragment="single">MPGTIMVSVLEFMDLPFSSSTSIRASLGKIEYQISDKGNFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QG80</accession>
    <name>A0A392QG80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Scarecrow-like protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132922">
        <property type="protein sequence ID" value="MCI22887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QG80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="VHIID" evidence="5">
        <location>
            <begin position="105"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="VHIID" evidence="5">
        <location>
            <begin position="136"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI22887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="21726" checksum="D9E7DBC0E025B03D" modified="2018-12-05" version="1" fragment="single">MMSVPPSIGSPHSWLKELKSEERGLYLIHLLLTCANHVADCNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRMVMVSEEILVQKLFFELFPFLKVAYILTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSTRPEGPPHLRITSVHPKKEVLDKIAHRLIEEAERLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHB6</accession>
    <name>A0A392QHB6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Late embryogenesis abundant protein (LEA) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135192">
        <property type="protein sequence ID" value="MCI23287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHB6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039624">
        <property type="entry name" value="LEA1/2/D7/KIN2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34191:SF23">
        <property type="entry name" value="ABA-INDUCIBLE PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34191">
        <property type="entry name" value="LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6770" checksum="7B1B69A11C88391F" modified="2018-12-05" version="1">MDSSNSASYNAGQAKGQAEEKASGMMDQAKNAAQSAKESLQETGQQMQAKAQETVDAAKDSTNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJ73</accession>
    <name>A0A392QJ73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138494">
        <property type="protein sequence ID" value="MCI23902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJ73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="13999" checksum="B4C154747779E61B" modified="2018-12-05" version="1" fragment="single">MDNFIFSVLFGLDKCCGVSDLVSNEEEDPISIEWDDGTRTEEDGFAATALPLIETDDDDDDALIENDSDDENSGASELDDEGGGGCDEEGGASELDDAGGGGWDEDGGASELDDSGGGVSELDAGGGESDEDVGGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QK33</accession>
    <name>A0A392QK33_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the methyltransferase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010143406">
        <property type="protein sequence ID" value="MCI24763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QK33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005768">
        <property type="term" value="C:endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004159">
        <property type="entry name" value="Put_SAM_MeTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10108:SF1082">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10108">
        <property type="entry name" value="SAM-DEPENDENT METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03141">
        <property type="entry name" value="Methyltransf_29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1 4 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="2 4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI24763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5109" checksum="2F52FBCF2597397B" modified="2018-12-05" version="1" fragment="single">MDMKANMGSFGAALKDKDVWVMNVVAQDGPNTLKIIYDRGLIGATHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QK43</accession>
    <name>A0A392QK43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDSL' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138619">
        <property type="protein sequence ID" value="MCI23926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QK43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001087">
        <property type="entry name" value="GDSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835:SF683">
        <property type="entry name" value="OS05G0506800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22835">
        <property type="entry name" value="ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00657">
        <property type="entry name" value="Lipase_GDSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017337046" evidence="3">
        <location>
            <begin position="18"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI23926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15058" checksum="6EF02C84C88C0016" modified="2018-12-05" version="1" fragment="single">WSLQQQWLFLVLPLVFAISATSCYTSIFSFGDSLTDTGNLNFISSPQSPNCLLPPYGETHFHHPTGRCSDGRLIIDFIAESFGLPYVKPYLGFKDGEVEKHGNIEHGVNFAVAGATALDRSFFEEKGFTVEVTANY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLR4</accession>
    <name>A0A392QLR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF223 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010144069">
        <property type="protein sequence ID" value="MCI24877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5579" checksum="D3DA70D0322A10DF" modified="2018-12-05" version="1" fragment="single">MSRAIDFIKDINDSKETWTLQVRIVDLWSVVNLSKGTEHIEMVVMDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QP41</accession>
    <name>A0A392QP41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Villin 4</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151656">
        <property type="protein sequence ID" value="MCI26163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QP41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6393" checksum="9DD5BECFB8157936" modified="2018-12-05" version="1" fragment="single">MAQIHEGKEPAQFFSILQRLIIFKGGNSSGYKKFIEEKGIVDESHNENLVALFRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QY82</accession>
    <name>A0A392QY82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164320">
        <property type="protein sequence ID" value="MCI28225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QY82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5092" checksum="8E40E6B3A5F895F7" modified="2018-12-05" version="1">MTLTVSTPDAGTGALIKQDPLLMPNSKPLFSKCYKVPRGGKDRSSGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R104</accession>
    <name>A0A392R104_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010178339">
        <property type="protein sequence ID" value="MCI30273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R104"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000125">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF468">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="25"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="87"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI30273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="17763" checksum="572A4F083E51C404" modified="2018-12-05" version="1" fragment="single">MVAGFVNSCDLSSAWKLFERIPNPNAVSWVTMLCGFARHGNIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKEMSYKDCVSWTTIINGYVRVGKLDEAHKIYNQMPYKDIAAKTALMSGLIQNGRIDEASQVFSQLGKRDAICWNSMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6X8</accession>
    <name>A0A392R6X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Protein PHR1-LIKE 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190513">
        <property type="protein sequence ID" value="MCI31842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006447">
        <property type="entry name" value="Myb_dom_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046955">
        <property type="entry name" value="PHR1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01557">
        <property type="entry name" value="myb_SHAQKYF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31499:SF80">
        <property type="entry name" value="HTH MYB-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31499">
        <property type="entry name" value="MYB FAMILY TRANSCRIPTION FACTOR PHL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Myb-like" evidence="6">
        <location>
            <begin position="35"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI31842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7931" checksum="445898AD3CEC77B0" modified="2018-12-05" version="1" fragment="single">MQAMQVSQKPHTPSAEVNXXXXXXXXXXXXXXKPRMRWSPELHEAFVEAVNQLGGSDKATPKGVLNLMNVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8Y3</accession>
    <name>A0A392R8Y3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198004">
        <property type="protein sequence ID" value="MCI32709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8Y3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4971" checksum="BEFD629D95B2444F" modified="2018-12-05" version="1" fragment="single">MDVEGGYGVWSSRDSRDKAKASGGGGGLFVRKMEEKSNGGCKVYTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RDM0</accession>
    <name>A0A392RDM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010211712">
        <property type="protein sequence ID" value="MCI34222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RDM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4565" checksum="5BDB40583FE716C3" modified="2018-12-05" version="1" fragment="single">MPPDTKIGRAANAIPITIIELLTFKMRTNEEQQAHAINTTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKL7</accession>
    <name>A0A392RKL7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010241634">
        <property type="protein sequence ID" value="MCI37173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6518" checksum="8620763486375F75" modified="2018-12-05" version="1" fragment="single">HREGKDVVVEGEEEDPIIGVLRASFGGALLSSLTGVVSFIHAALTALLLELEAITILGMKTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPB2</accession>
    <name>A0A392RPB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010256581">
        <property type="protein sequence ID" value="MCI38498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="9145" checksum="90948F9999801366" modified="2018-12-05" version="1" fragment="single">GAGVGGVLAGGELTGTGAGGELTGTGVGGELTGATTGGVDAGAFATGATAFAGDLAGVTGAAVGDVAGGNEAGDLATGAGDVGLVGAATGATVGVLTVGDVVGAVVGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RR71</accession>
    <name>A0A392RR71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010263707">
        <property type="protein sequence ID" value="MCI39113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RR71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2847" checksum="8B209567EE26881C" modified="2018-12-05" version="1" fragment="single">AVTVAVTAIAVIAVAAMRLYSQFCGFSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RT77</accession>
    <name>A0A392RT77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phospholipase D Y-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010272358">
        <property type="protein sequence ID" value="MCI39838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RT77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8187" checksum="8C5579D7C02BBA6F" modified="2018-12-05" version="1" fragment="single">MPHLSHVPGVLSTGDVLQWMAANSTRRLDVIAQYWQLLASPDDPRSGDYGYTQDQMHKFGAHQGASVYQALDDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1K7</accession>
    <name>A0A392S1K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295403">
        <property type="protein sequence ID" value="MCI41716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4917" checksum="016EA4ADD1289447" modified="2018-12-05" version="1" fragment="single">QVANRTFSSSVHRVVLRKCFAVLSSNESGLRHSSEERGFLSHNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2F0</accession>
    <name>A0A392S2F0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010312255">
        <property type="protein sequence ID" value="MCI43038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2F0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="68" mass="7960" checksum="F8228A7D9984CE06" modified="2018-12-05" version="1" fragment="single">MRQRRWLEFLKDYDFGLSYHPGKANVVADALSRKSLHMSSLMAKELELIEEFRDLSLGCETTNRSVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4T1</accession>
    <name>A0A392S4T1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010323445">
        <property type="protein sequence ID" value="MCI43901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4T1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8238" checksum="69BD8FFC76AD5710" modified="2018-12-05" version="1" fragment="single">VEVDLEVEVEILVVEVVLVIVVDVVLLEVNVVLVVVDVLVVDGLIEVIVLVEVQVVFVVQKMVYFHERKFVQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SC12</accession>
    <name>A0A392SC12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010343749">
        <property type="protein sequence ID" value="MCI45396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SC12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="10"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5046" checksum="401D3B48A8B554E5" modified="2018-12-05" version="1" fragment="single">MSLMMIKDEVHFPGKPKTQGQSLKSSYPTASTEGRFLNVILSSRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLN6</accession>
    <name>A0A392SLN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010392443">
        <property type="protein sequence ID" value="MCI48850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="41"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11926" checksum="2AD08FA2D22B61C4" modified="2018-12-05" version="1" fragment="single">AGDISCFSAASIEELRQKSLGYELKGLLLNYMLSSCQEQEVLEAKNKMKVVDDNLASIEKRYYETKAALEKEIKDLKESQKSEAERLRKECEEKLKKEFDEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SM24</accession>
    <name>A0A392SM24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010393456">
        <property type="protein sequence ID" value="MCI48926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SM24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4277" checksum="FD04243EEA014F54" modified="2018-12-05" version="1" fragment="single">MSSGKKWKTTQGQALLGRPAHNYEVPILELSGDWQPHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPR9</accession>
    <name>A0A392SPR9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010415884">
        <property type="protein sequence ID" value="MCI50397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="63" mass="7235" checksum="4D08EAF7EC675FA5" modified="2018-12-05" version="1" fragment="single">MGCTEENKTILGVYVLREEANVWWKNVKLRIGADDVKNKKVIEFMELKQGNLSVAEYSAKFEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYF6</accession>
    <name>A0A392SYF6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010463424">
        <property type="protein sequence ID" value="MCI53457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="6108" checksum="EB1675D06CE708EC" modified="2018-12-05" version="1" fragment="single">MFKREFLVKYFPVDVKNKKVVEFMELKQENLSVADYAVKFESLCAFSPHYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZP1</accession>
    <name>A0A392SZP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010472129">
        <property type="protein sequence ID" value="MCI53972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7087" checksum="657A32E68A89E61B" modified="2018-12-05" version="1" fragment="single">QAQNPLNQPLPEIDPALLQPINIAYPAQTSDLPPITSETDLDTVAEGIKIAAEIHKNKSNELSSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6Z6</accession>
    <name>A0A392T6Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010508504">
        <property type="protein sequence ID" value="MCI56187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3974" checksum="2850D8E1A267410F" modified="2018-12-05" version="1" fragment="single">MYGKTKFEVSDQWKGQQGVRGLGVVVLDAVVLLVVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB51</accession>
    <name>A0A392TB51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010545304">
        <property type="protein sequence ID" value="MCI58383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6911" checksum="3DA6A6549138950B" modified="2018-12-05" version="1" fragment="single">MQKKFSKGKISESDKFVTSEAHVPGFDISLNTVLPETQPINVSSSTSPDTDELDIEAETIIKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFL2</accession>
    <name>A0A392TFL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010568812">
        <property type="protein sequence ID" value="MCI59712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3021" checksum="621A6CF169398C1B" modified="2018-12-05" version="1" fragment="single">MTLRFQSPRRLGGLNFGTDDVGNVLAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMP1</accession>
    <name>A0A392TMP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010618483">
        <property type="protein sequence ID" value="MCI62413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3233" checksum="E34D9EB95798AA6E" modified="2018-12-05" version="1" fragment="single">EHSVLRTFRQALPGDVLAKVSPDLAVAVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNT2</accession>
    <name>A0A392TNT2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010601706">
        <property type="protein sequence ID" value="MCI61545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="4"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10350" checksum="4C3DBE44CC48111E" modified="2018-12-05" version="1" fragment="single">SYVLHKEANFWWENANPKLGAGGALVTWDRFKIEFLIKYYPTDERNRKVVEFMELKQGNMIVTEYAAKFEELCRFAPHYNIVEAEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRY0</accession>
    <name>A0A392TRY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010628895">
        <property type="protein sequence ID" value="MCI62980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6381" checksum="01535B5E8B2DA3FE" modified="2018-12-05" version="1" fragment="single">FKPPLALKNRASSPSEPSSEQGRLLLAEATNFRVPDGFGRFLSLKRGMLRCLVAFFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TT05</accession>
    <name>A0A392TT05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010639590">
        <property type="protein sequence ID" value="MCI63577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TT05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4294" checksum="B175A9EF5B338A4D" modified="2018-12-05" version="1" fragment="single">DMLAEPEKARGVGWARESQSHAEGSWLQPEKAIRAGWAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUD8</accession>
    <name>A0A392TUD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010642452">
        <property type="protein sequence ID" value="MCI63726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7773" checksum="460E9DFAE1309029" modified="2018-12-05" version="1" fragment="single">KKEKADRSLHRYFRRIRPPPHCYRVTTADTETTPPPRILPEPPPSPLFFSLSLSPEHLAAGQPLSLSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUQ0</accession>
    <name>A0A392TUQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010665841">
        <property type="protein sequence ID" value="MCI64911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8177" checksum="CB8ECEA66F0FB448" modified="2018-12-05" version="1" fragment="single">ISRPSAKVRQASSEESTSSVTVNKDWEHWVALQGSEKTVVDDVLDIGKAIGVKFKGDNVNMFSVLSRGGKDKPTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWF3</accession>
    <name>A0A392TWF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010668176">
        <property type="protein sequence ID" value="MCI65024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9598" checksum="53BF6C8EE1815C36" modified="2018-12-05" version="1" fragment="single">MPNVYYQTQGTLYSEAMTYRQQFPPPPFYPRFPSPEAWTEYRRADQIEYEAIMDRNEAVFYEQYGAHMKAQEEQRAAASAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYT2</accession>
    <name>A0A392TYT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010693757">
        <property type="protein sequence ID" value="MCI66343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6249" checksum="A2639E8E46AA15FB" modified="2018-12-05" version="1" fragment="single">RQLPPPITLAYQRRVSDQAQVETGQLALGGSLRRVQAYYVTVHLALGGSLRRLFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZ58</accession>
    <name>A0A392TZ58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010677348">
        <property type="protein sequence ID" value="MCI65520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZ58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7109" checksum="7258792AE436B1F4" modified="2018-12-05" version="1" fragment="single">AEFRKLLSQNLYSIVTVVTAADISYAFRETDVKLLKQRERIGNEDYVGVIEKTDVGTSERGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U088</accession>
    <name>A0A392U088_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010684273">
        <property type="protein sequence ID" value="MCI65870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U088"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6866" checksum="6D006F8BE99A262B" modified="2018-12-05" version="1" fragment="single">MIGFSEIRNFATLVNKSRICDDDERAKTSYYKAVNDRKGKGPDRGKPYDNQGGGNTNGGRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U3N4</accession>
    <name>A0A392U3N4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010715112">
        <property type="protein sequence ID" value="MCI67347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U3N4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9486" checksum="058D682770005507" modified="2018-12-05" version="1" fragment="single">LERFNKAAVEVKTEESMKLYLLDQGLRRGSDFAKAVGIEEIKTLNAFFEKAQKYIAYEEKQMATDVRRPKGQEKDEVGPSCRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UB57</accession>
    <name>A0A392UB57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010760429">
        <property type="protein sequence ID" value="MCI69650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UB57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="19"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3654" checksum="86FF385AA33B5531" modified="2018-12-05" version="1" fragment="single">MKRGGEGGTIAEPVRRRQTSSSPTFSPSFSNKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDN5</accession>
    <name>A0A392UDN5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010797595">
        <property type="protein sequence ID" value="MCI71512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDN5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2891" checksum="118E2AB3759549FA" modified="2018-12-05" version="1" fragment="single">MADADVDIEADANEQTSGTDSESDFEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UET3</accession>
    <name>A0A392UET3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010809232">
        <property type="protein sequence ID" value="MCI72041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UET3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4932" checksum="7D1CEB44897CD0C2" modified="2018-12-05" version="1" fragment="single">MAQRALTDAIELMANAMAQEAVSSTADRVAQEARRGGEDELRLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHL4</accession>
    <name>A0A392UHL4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010831188">
        <property type="protein sequence ID" value="MCI73089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHL4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8034" checksum="F5B0F74EBF46AAD3" modified="2018-12-05" version="1" fragment="single">MIAKKERTQGMRMSVGKESTEGVMIILEKESTEGMMMIMEKEGIIEGMMMVVEKEGTEGSRKRDSHEGYSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHU3</accession>
    <name>A0A392UHU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832798">
        <property type="protein sequence ID" value="MCI73183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="24"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="37"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI73183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8062" checksum="8A29FC570985161D" modified="2018-12-05" version="1" fragment="single">CESAPDFDPSLCNKKLIGARSFSKGYLMGSTGGGRRKATDTISPRDRDGHGTHTATTAAGSVVANATLLGYATGTARGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIX8</accession>
    <name>A0A392UIX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein CHLOROPLAST IMPORT APPARATUS 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010815223">
        <property type="protein sequence ID" value="MCI72320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8363" checksum="E76A4A2E479008CE" modified="2018-12-05" version="1" fragment="single">SGEEFDCKSILEDEIEEGIDSVIGSRVDDGGSSGGGGLCYGGGGRVSPWFGRFGGKLRGLRHVGDVNLLNFAMVDILEIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJ38</accession>
    <name>A0A392UJ38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010839233">
        <property type="protein sequence ID" value="MCI73482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJ38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6720" checksum="FA7EFF6A73536D20" modified="2018-12-05" version="1" fragment="single">MQQRLQRSNVNNIPSSSTVPPPAREDSVEASTVSESRLGGKKVKLPLFEGEDPVAWITRVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJR4</accession>
    <name>A0A392UJR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010827320">
        <property type="protein sequence ID" value="MCI72884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8993" checksum="E48E36493F73D27A" modified="2018-12-05" version="1" fragment="single">SSSSSSRPNRFVDDTKAEHYGLIKANGVVQERSIDFPAIPFLPEMQETAEGYQWMNFNSMIGDCNISWVEEFYANAFGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKS7</accession>
    <name>A0A392UKS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010815927">
        <property type="protein sequence ID" value="MCI72345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8234" checksum="96390FEBBC8D6247" modified="2018-12-05" version="1" fragment="single">DGVVELRACGLEHSIVQFKDPGYEHRSTKPRINTSPVNGPFFLGDDLLHTFPLGLFQFILQSANSAFQTLDSDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULU4</accession>
    <name>A0A392ULU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010848105">
        <property type="protein sequence ID" value="MCI73858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6511" checksum="4F33F5B75FAB9D1D" modified="2018-12-05" version="1" fragment="single">TVLIQTESAKVSSNMVVEEGFNNTQAEKRRKYEQIGQNNTIGAQGMKVASLTPKASQWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMS0</accession>
    <name>A0A392UMS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010849802">
        <property type="protein sequence ID" value="MCI73944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4909" checksum="1E6C03FE0C030F72" modified="2018-12-05" version="1" fragment="single">DKVETNGGGLRRTEEVLRNSNRREQDVGRGIERAKINENNGGTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UP84</accession>
    <name>A0A392UP84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010865730">
        <property type="protein sequence ID" value="MCI74688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UP84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="28"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8551" checksum="07320627FBF200AD" modified="2018-12-05" version="1" fragment="single">KKTNSPHEEEPVRKKRSTRGQTHGEGGSSQQQPPQQSQEQQGELSYVASFVVNYPHMGSGQRSWSNRFYLESCKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USU5</accession>
    <name>A0A392USU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010882105">
        <property type="protein sequence ID" value="MCI75410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USU5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7574" checksum="E8C2948D32587017" modified="2018-12-05" version="1" fragment="single">ASRSLVWRGAPVKQVVEGNLLEVARRAVGYDAARRFKKFKFLCTTDNCASHSADGAAREHGKLCRFLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392USX2</accession>
    <name>A0A392USX2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010892503">
        <property type="protein sequence ID" value="MCI75857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392USX2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4368" checksum="71E50E0D0AFB66AE" modified="2018-12-05" version="1" fragment="single">PCGRGREAAKGEKRSEAAEEKFAVEGENQQSERCGGEKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UVN2</accession>
    <name>A0A392UVN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010892458">
        <property type="protein sequence ID" value="MCI75855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UVN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4358" checksum="B64CC13223B24634" modified="2018-12-05" version="1" fragment="single">MKDESNQKRTRDDDEKGVSKKQKVDAEEKKKPSGPVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXC2</accession>
    <name>A0A392UXC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010980958">
        <property type="protein sequence ID" value="MCI79772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6478" checksum="D2BC556D9F1ABE54" modified="2018-12-05" version="1" fragment="single">KGTLLDADGESLTGIDIPFFTMEVLVFFFFEAIAETVVMGVALVIRAEEPSLAFNSFLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYS7</accession>
    <name>A0A392UYS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010986232">
        <property type="protein sequence ID" value="MCI80021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3966" checksum="E8A9104EB0152182" modified="2018-12-05" version="1" fragment="single">EDIAAVEEAAVEDDMAAAKDMFLNKNKNRDGAAVEIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V200</accession>
    <name>A0A392V200_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011036129">
        <property type="protein sequence ID" value="MCI82147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V200"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8259" checksum="A3DD5314DB6E0773" modified="2018-12-05" version="1" fragment="single">CEESFQELKRRLTIAPVLTLPDAKEPFVVYCNASKMGLGGVLMQKGKVAAYALRQLKTHERNYPTHDLELAAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4G1</accession>
    <name>A0A392V4G1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative plant/MNJ7-17 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011060405">
        <property type="protein sequence ID" value="MCI83156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4G1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35307:SF3">
        <property type="entry name" value="DUF4220 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35307">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6892" checksum="5FABD8912C66053C" modified="2018-12-05" version="1" fragment="single">MSADLIKGFKARKLWFPCKYFCLNATSLTIIAVTVKLSVDLNTPMPHRHDQLAKLASSAIIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V679</accession>
    <name>A0A392V679_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011031504">
        <property type="protein sequence ID" value="MCI81950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V679"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4484" checksum="FDE74053688D74F6" modified="2018-12-05" version="1" fragment="single">MATLSRLLSVSVRCRVIDLNLAGKVVRKLSLSQQDKIATSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7Z7</accession>
    <name>A0A392V7Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LanC-like protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011070473">
        <property type="protein sequence ID" value="MCI83582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6475" checksum="3C6F1407C904E3AA" modified="2018-12-05" version="1" fragment="single">MADRFFPNDLPPPFVAETTLEEATSSQTPTPHSLTSLLSLPYTTLTSKLQVAALHFKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8C9</accession>
    <name>A0A392V8C9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093856">
        <property type="protein sequence ID" value="MCI84556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8C9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6674" checksum="755A803D63B0E486" modified="2018-12-05" version="1" fragment="single">MGQNQLFMLKPARCAALHARCAGNRIEQAENYRSWRLAPTAWRLAPRADCNLKNSAFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VDD4</accession>
    <name>A0A392VDD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011115817">
        <property type="protein sequence ID" value="MCI85453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VDD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7157" checksum="B72218ED1A193ED1" modified="2018-12-05" version="1" fragment="single">MELKQGGMTVSEYAAKFEDLCRFAPHYNTLEAEEDKCVKFENGLRPDIKQLIGFSEIRNFPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF35</accession>
    <name>A0A392VF35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118823">
        <property type="protein sequence ID" value="MCI85571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5510" checksum="8A242A7C162B59AA" modified="2018-12-05" version="1" fragment="single">VQWDHMGGVMVKSRVVYVILLFVYNKWGRPDSDIEDGENTFMKHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFV4</accession>
    <name>A0A392VFV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011124922">
        <property type="protein sequence ID" value="MCI85831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8646" checksum="2167A58875A87635" modified="2018-12-05" version="1" fragment="single">EEKKRLEEEEKRRREEEEEEEKNRLLEVEKMRQEDKLLQISLDTTPEAKGNEIEAEPHPLMLAMQEKLEAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VII8</accession>
    <name>A0A392VII8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011145763">
        <property type="protein sequence ID" value="MCI86615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VII8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8466" checksum="2100BBC842CF6D62" modified="2018-12-05" version="1" fragment="single">LRPRSDFAKVVGIEKPRTLDEILHKAQLYIQYEEVEVADATLHARPDDNNLAREPHRKGGDRRKNDKHREPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VKJ8</accession>
    <name>A0A392VKJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011180582">
        <property type="protein sequence ID" value="MCI87983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VKJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6080" checksum="3B66CFF8B8217E29" modified="2018-12-05" version="1" fragment="single">MCFREVARSLKAQKDVFVMFASLRMEENNEVSMLPVVREFTDVFPDDILDLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VM93</accession>
    <name>A0A392VM93_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011221600">
        <property type="protein sequence ID" value="MCI89524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VM93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8372" checksum="89A2A2489CE088EC" modified="2018-12-05" version="1" fragment="single">DHWWRNANQRLGANGAVITWARFKPEFLTKYFPADERNHKVIEFMELKQRGMSVSEYAAKFEELCRFAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUT7</accession>
    <name>A0A392VUT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011266118">
        <property type="protein sequence ID" value="MCI91222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6066" checksum="F94DA1138C09AA6B" modified="2018-12-05" version="1" fragment="single">MENCNEVSSPIVPGSKPVKDENGSATDAREYKQMVGCLMYLLATRPDLAYSVCLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VV90</accession>
    <name>A0A392VV90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011250087">
        <property type="protein sequence ID" value="MCI90635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VV90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="46"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7802" checksum="B72FAA50896BB3A0" modified="2018-12-05" version="1" fragment="single">TDEIAIPMDPLGRVFFRRAVRNLEAAQAAAATAPQPPHPAPHHQQHQVPPHIPQQHQYSDYELGMAATLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0U2</accession>
    <name>A0A392W0U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011325772">
        <property type="protein sequence ID" value="MCI93312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3484" checksum="D512EE69E2324960" modified="2018-12-05" version="1" fragment="single">MKPLKVFRESEVVKPLKALRGSEARELLKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W872</accession>
    <name>A0A392W872_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011401604">
        <property type="protein sequence ID" value="MCI95963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W872"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5033" checksum="08DD1D71D8B76292" modified="2018-12-05" version="1" fragment="single">RRGRGIIPPRYPGVRGPEARTVPSLGAAGPPRTRRSIRTQPPFLIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W932</accession>
    <name>A0A392W932_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011393314">
        <property type="protein sequence ID" value="MCI95651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W932"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7773" checksum="9F77667139D0AC87" modified="2018-12-05" version="1" fragment="single">DPSHVIESDEIQVKENLTVETLPIRIEGREVKRLRNKEISSVKVVWGGPAGDYATWELESKFREFYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9F2</accession>
    <name>A0A392W9F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011387789">
        <property type="protein sequence ID" value="MCI95475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6849" checksum="D0B54C62C94C9587" modified="2018-12-05" version="1" fragment="single">RAVRELQAAQAAAAAPQPPPPQPAATHEQHQVPPHIPHQHQYSDFELGMAASMYDQYYRMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAT3</accession>
    <name>A0A392WAT3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397772">
        <property type="protein sequence ID" value="MCI95830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAT3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4282" checksum="4AB220D85C9713B3" modified="2018-12-05" version="1" fragment="single">MPLFSSVPARKVRQPKEKPRKVWRRGSMVGSPSSREE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAT9</accession>
    <name>A0A392WAT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011452988">
        <property type="protein sequence ID" value="MCI97754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6284" checksum="6002A45B0C0C9E03" modified="2018-12-05" version="1" fragment="single">MSTGRSQRMEGLEEMEQRLRAEQQQEIATMRDAMMAQLRAEFSRGIPDQSNQQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WDD0</accession>
    <name>A0A392WDD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011464497">
        <property type="protein sequence ID" value="MCI98116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WDD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI98116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5794" checksum="2BDB1DFBD3C039AD" modified="2018-12-05" version="1" fragment="single">IVQVSPVKRRKDSSDSEDDQHASEGKGKEQVISAADTAPMKKKTGDDGQLYDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXU3</accession>
    <name>A0A392MXU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021965">
        <property type="protein sequence ID" value="MCH92132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15749" checksum="B68D09A08C85C0B9" modified="2018-12-05" version="1" fragment="single">MQSKPRNKAPSQPKPRNKAPEQSNDPRNKLQPVVYNPPETSSKIYYPPELGEILRSHIDGILKPLRKEIREIERAGEINKGKQVPEKSIDTAGKKISFEFVGDQEWLQQFPGSDILLSKLAGWEIKGEKRKSANTWDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZ37</accession>
    <name>A0A392MZ37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022079">
        <property type="protein sequence ID" value="MCH92179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZ37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000322">
        <property type="entry name" value="Probable disease resistance protein At1g63360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.430:FF:000003">
        <property type="entry name" value="Probable disease resistance protein At5g66910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1052">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RPM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="2"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="142"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH92179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="348" mass="39779" checksum="B9420E5F0EA195BA" modified="2018-12-05" version="1" fragment="single">MPNNNKGSRIIITTRMMHVAEFFKKSFIVHVHNLQLLHPNEAWELFCKRVFRFELGGHCPSELEAVSKEIVQKCKQLPLAIIAIGGLLSTKSKTVIEWKKVSQNLSLELGRNAHLTSLTKILSLSYDGLPHYLKPCILYFGLYPEDYSINHKRLARLWIAEGFVKSDERRTPEQVAEEYLSELIQRSLVQVSNVGFEGKVKTCQVHDLLREVIIRKMKDLSFSHCVHEDSVSLSVGKNRRLSIATSPNNVLKSTDISHVRAIHVFGKHGSLEHFLGTLCSQSRTLKALPKSVGELLNLETLDLRNTLVREIPREINKLTKLRHLLAFKRNYEAKYYVLGFTTGVQMEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NB23</accession>
    <name>A0A392NB23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA polymerase II transcriptional coactivator KIWI-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010033953">
        <property type="protein sequence ID" value="MCH97046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NB23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.31.10">
        <property type="entry name" value="Transcriptional Coactivator Pc4, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003173">
        <property type="entry name" value="PC4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009044">
        <property type="entry name" value="ssDNA-bd_transcriptional_reg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02229">
        <property type="entry name" value="PC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54447">
        <property type="entry name" value="ssDNA-binding transcriptional regulator domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcriptional coactivator p15 (PC4) C-terminal" evidence="2">
        <location>
            <begin position="48"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH97046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="10086" checksum="2CA6E5EBE5E026B3" modified="2018-12-05" version="1">MSRIERGKKREEHDSASDNDIEAHTPPKKSLKKDSDNNSDDDNRIFIFELSESKKVSVKVWEKNIRVDIRQFYTNEDGKQSPKVSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJV8</accession>
    <name>A0A392NJV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Polyadenylate-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042285">
        <property type="protein sequence ID" value="MCI00121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008143">
        <property type="term" value="F:poly(A) binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd12306">
        <property type="entry name" value="RRM_II_PABPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23236:SF22">
        <property type="entry name" value="OS02G0757900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="4">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI00121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14380" checksum="3B31D21F23D1D673" modified="2018-12-05" version="1" fragment="single">VDYACTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALSLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKVPRFRMGMRYSPYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKM7</accession>
    <name>A0A392NKM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043231">
        <property type="protein sequence ID" value="MCI00447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="1">
        <location>
            <begin position="60"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="30364" checksum="816DDE9B8CDE44FF" modified="2018-12-05" version="1" fragment="single">MMLGRMFQTLCPLPQRSLQERRFLRMLLKFQLIKCPSISLRMHKDLIKEAGLMKTVWGIGDCYEKLVKEFLVNIPEDCDNPMSTEYQKVFVRGECVNFSPTIINKFLERSEEPQPDLEVTDSDVCKEITANQVKVWPKKKKISAGKLSVKYAILNRIGAANWVPTKHTSYIATAFPSLLCSIILDQHPGIRIVSDVPKKRESPLTLHYKLFGEHHVPDIVGTSSKSAPAPAPMSRKEVIAGLKAHYKELDEKKLQFERMIQALELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNI8</accession>
    <name>A0A392NNI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like kinase CR4</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046096">
        <property type="protein sequence ID" value="MCI01421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052929">
        <property type="entry name" value="RNase_H-like_EbsB-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074">
        <property type="entry name" value="BNAC02G40300D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47074:SF48">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10134" checksum="4E72C4E9B9338CE2" modified="2018-12-05" version="1" fragment="single">MTRRCSHEWKAVCIAASKPSLKSQYSTVRAWRKPMSGRVKCNIDASFSSNSDRVGIALGLLSALNRAHELQLGPVEFELDSKRVVDSFHSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSQ6</accession>
    <name>A0A392NSQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Fringe-related family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048407">
        <property type="protein sequence ID" value="MCI02199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006740">
        <property type="entry name" value="DUF604"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10811">
        <property type="entry name" value="FRINGE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04646">
        <property type="entry name" value="DUF604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="19575" checksum="AB4016CD48B43814" modified="2018-12-05" version="1" fragment="single">YDVYGNLLGLLASHPVTPLVSLHHLDVVEPIFPNVTRVEALQRLTIPMKLDSAGLMQQSICYDKSKRWTVSVSWGFVVQIFRGVFSPREMEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYFSKAKSNDTTQQTLTEYERHRVPHPECRWKMANPSSIDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSW0</accession>
    <name>A0A392NSW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050755">
        <property type="protein sequence ID" value="MCI02958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3821" checksum="032A288104C8DBCE" modified="2018-12-05" version="1" fragment="single">MGLKEKRVFAGLMKKVEVFLLKRESGNLVDITVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NWK3</accession>
    <name>A0A392NWK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052685">
        <property type="protein sequence ID" value="MCI03590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NWK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8268" checksum="297956F67A0ACA90" modified="2018-12-05" version="1" fragment="single">KLHGGQHLAWTYYQPRGPKFQNDYEVDSQNALYNDRAPSGALFGIEAPIRSQYDMGNANKKGNIFLKVVYSMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NX23</accession>
    <name>A0A392NX23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010053250">
        <property type="protein sequence ID" value="MCI03780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NX23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10474" checksum="1CCB26771349927F" modified="2018-12-05" version="1" fragment="single">MEAEAMRSTSPFLFKLSEANILLWKSSNSYIQRQQAPSALLKLNWEQQDPMVPSSIMASCFNVRTSHGFHDNKRSTAGYFIFLGKNPVACSSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXB1</accession>
    <name>A0A392NXB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ADP-ribosylation factor GTPase-activating protein AGD14-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051236">
        <property type="protein sequence ID" value="MCI03115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044820">
        <property type="entry name" value="AGD14-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46085:SF6">
        <property type="entry name" value="ARF GTPASE ACTIVATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46085">
        <property type="entry name" value="ARFGAP/RECO-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10395" checksum="0EBB3082CC98A5D1" modified="2018-12-05" version="1" fragment="single">SSFPARVPGWQMGAPPGMGVSVHYNNVMSVPSFPQPSQSTNPFDVINETTSVQAPTFPSMSSLQGALPSVTPSATVHPSNMGNQSFAWNPPSSLSYAPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXY9</accession>
    <name>A0A392NXY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054196">
        <property type="protein sequence ID" value="MCI04069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6409" checksum="269FB0C530261EE2" modified="2018-12-05" version="1" fragment="single">EDTSHLRGDARNCLYFLWKSFGFPPRNLWTYEMRGGIFVEDNDDVLEGREVSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZ89</accession>
    <name>A0A392NZ89_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056451">
        <property type="protein sequence ID" value="MCI04774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZ89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="60" mass="6921" checksum="C3988DBF6BBDB43E" modified="2018-12-05" version="1">MKDMGDTSYVIDIKIQRDNVRRILGRYQSNPDMKHWKAVKKLMRKSTSGYIFMLAGGAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0C4</accession>
    <name>A0A392P0C4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057118">
        <property type="protein sequence ID" value="MCI04960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P0C4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5497" checksum="5C4BBBB403F40F8C" modified="2018-12-05" version="1" fragment="single">DVSSAPTESPNRNEDEQKDIHSSTPLYLELHPEGTSNFKSPTKVSQVWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8D2</accession>
    <name>A0A392P8D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066269">
        <property type="protein sequence ID" value="MCI07680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6311" checksum="0ACD9632258D864E" modified="2018-12-05" version="1" fragment="single">SQLQQPVITPQEFQTHAVWPGDRPIFEDGVNDNAANDNAANDGDDIDTAADAVDDDEAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8V9</accession>
    <name>A0A392P8V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DEAD-box ATP-dependent RNA helicase 28-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066986">
        <property type="protein sequence ID" value="MCI07870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3772" checksum="12AE30E5A0FBC6EF" modified="2018-12-05" version="1" fragment="single">MRELFQTVMKDKKPKQRGSGTGKKAKKSFKSKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE97</accession>
    <name>A0A392PE97_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">O-fucosyltransferase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase GT106 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073911">
        <property type="protein sequence ID" value="MCI09799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019378">
        <property type="entry name" value="GDP-Fuc_O-FucTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052272">
        <property type="entry name" value="GT106_glycosyltransferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31933">
        <property type="entry name" value="O-FUCOSYLTRANSFERASE 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31933:SF1">
        <property type="entry name" value="PROTEIN PECTIC ARABINOGALACTAN SYNTHESIS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10250">
        <property type="entry name" value="O-FucT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0294">Fucose metabolism</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00030350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI09799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="17572" checksum="A18F0812DDD5AA0E" modified="2018-12-05" version="1" fragment="single">YDNVPPEINKLRCRVNYHALKFLPDIEQMADLLASRMRNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAIMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYMKETQIYVASGQVYGGQNRMAPLRNMFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF33</accession>
    <name>A0A392PF33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha-amylase/subtilisin inhibitor</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077300">
        <property type="protein sequence ID" value="MCI10708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004866">
        <property type="term" value="F:endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011065">
        <property type="entry name" value="Kunitz_inhibitor_STI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002160">
        <property type="entry name" value="Prot_inh_Kunz-lg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33107">
        <property type="entry name" value="KUNITZ TRYPSIN INHIBITOR 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33107:SF31">
        <property type="entry name" value="KUNITZ TYPE TRYPSIN INHIBITOR 104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00197">
        <property type="entry name" value="Kunitz_legume"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50386">
        <property type="entry name" value="STI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13384" checksum="7EC0280C4AA9F5EE" modified="2018-12-05" version="1" fragment="single">VVLVPFSHHDDDEVRLNRDLRIAFVASSSCAQSSQWRLGEKDATSGRRLITTGADDRTIGAPGNFFRIVQTQTIGVYNIQWCPTEVCSTCKFECGTVGVIRENGKILLALDGGALPIVFQKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNI3</accession>
    <name>A0A392PNI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Photosystem I P700 chlorophyll a apoprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086637">
        <property type="protein sequence ID" value="MCI13049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7974" checksum="E9A10879A6CD309E" modified="2018-12-05" version="1">MKLQNDNDVKNMFSVFSQYSTTGPIELDAALVIYIQDSCSSLIRPRTFDEIAACMVEPENDEDEVVNLSDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PP39</accession>
    <name>A0A392PP39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087319">
        <property type="protein sequence ID" value="MCI13210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PP39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8242" checksum="787A95ED71274A16" modified="2018-12-05" version="1">MSFPAKISPGKMIGGGVGAAATANSHWNLFFSSRRSQRWLSLKREKNTFEVEESRRNLEIHGGPDEHEEQVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUU7</accession>
    <name>A0A392PUU7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094972">
        <property type="protein sequence ID" value="MCI15086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="38"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="181"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI15086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26777" checksum="A8E863C8C74BEDF3" modified="2018-12-05" version="1" fragment="single">ERPPPLGAYDGQTDPDEHIDNINAVLDFRRVSGAIRCRLFPTTLRKGAMTWYQSLAPRSIHSWKDLTEQFCRHFTASRRHPKTVASLEAIFQGENESLRNFIERFNKEAVQVNTTDDXXXXXXXXXXXXXXXXXXXXXXXXXRTLDDLLFKAQAYIQYEEVQAADAARHSRPGSSQPAREPSQRGGDRRKGDRSREPRGPPSTFAVYTPLNKSREAILTECNSSEFTKAGVKFPKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVM9</accession>
    <name>A0A392PVM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097671">
        <property type="protein sequence ID" value="MCI15722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6967" checksum="B79A0552CF0B406A" modified="2018-12-05" version="1" fragment="single">ELAPILEHFDLGPSQRVKLRGRNPQMIQNPNFKGIEGKTNMQVLEDELKHRHAAFLFITAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZE1</accession>
    <name>A0A392PZE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldose reductase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aldo/keto reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105555">
        <property type="protein sequence ID" value="MCI17461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827">
        <property type="entry name" value="2,5-DIKETO-D-GLUCONIC ACID REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827:SF3">
        <property type="entry name" value="NADP-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00063">
        <property type="entry name" value="ALDOKETO_REDUCTASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI17461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10465" checksum="B9140CF41D7D79B8" modified="2018-12-05" version="1" fragment="single">MLEACKNNGIHVTAYSPLGSAEGGRDLIHDQTVDRIAKKLNKSPGQVLVKWAIQRGTSVIPKSTNPNRIRENVAVFNWEVPQQDFKNLSNIPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2X0</accession>
    <name>A0A392Q2X0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109171">
        <property type="protein sequence ID" value="MCI18232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q2X0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14189" checksum="D4157D59F865D630" modified="2018-12-05" version="1" fragment="single">HPEHHQPDDMEEGDSDDDIVRDMEEEKMEREGDAAPVPIRRPSWVNPYEGQPEPKDFSRGGGQIRRYCLNMERRTLLDVLLSATEGSYMTVVLTNEYGLVGTSPKGHRNVGLSEMGYTFLDPGHGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5N3</accession>
    <name>A0A392Q5N3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TMV resistance protein N-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112094">
        <property type="protein sequence ID" value="MCI18856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5N3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4033" checksum="5AC580AFBB39D063" modified="2018-12-05" version="1" fragment="single">MVAHQKRFEKNSEKIKAWTAALSGVADLKGHHIDTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q914</accession>
    <name>A0A392Q914_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Serine/threonine-protein kinase aurora-3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120797">
        <property type="protein sequence ID" value="MCI20624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q914"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030616">
        <property type="entry name" value="Aur-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24350">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE IAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI20624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12299" checksum="BC6B8057C80D1314" modified="2018-12-05" version="1" fragment="single">MCGTLDYLAPEMVENKSHDHAVDNWTLGILCYEFLYGAPPFEAESQEDTFKRIRNVDLNFPHAPLISKNAKNLITRLLVKDSSKRLSLQKIMEHPWIKENANHMGVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9L2</accession>
    <name>A0A392Q9L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120474">
        <property type="protein sequence ID" value="MCI20562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10021" checksum="017DA5867564EF62" modified="2018-12-05" version="1" fragment="single">MDPATSKGSGEMLDHVDKRVYENLSHLVEGVATDSGAGCSLGDRVSVCGEDRNSEETCSNDLRLNEELKERPLEDKGQNQNVGADPRKTNDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCH2</accession>
    <name>A0A392QCH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleoporin Nup211-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010125432">
        <property type="protein sequence ID" value="MCI21537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="47"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14206" checksum="4FF9BEE9386A6516" modified="2018-12-05" version="1" fragment="single">EIADKLTETAEAAEAAASAAYTMDEQRRIACAEIERLRKXXXXXXXMYAQKLKESEEKNIALSKEKEQLTNQMNATIQEVHMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QD21</accession>
    <name>A0A392QD21_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010129327">
        <property type="protein sequence ID" value="MCI22231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QD21"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7929" checksum="D0566F8825ABE08C" modified="2018-12-05" version="1" fragment="single">MESRKNWSCFWTWRAAQAGWRKAPSAESMNVSFWIRRGARCAWRKERSSSIYAAVFILAAARERRCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE58</accession>
    <name>A0A392QE58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sodium-dependent phosphate transport protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128784">
        <property type="protein sequence ID" value="MCI22132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="15323" checksum="B689263444976B68" modified="2018-12-05" version="1" fragment="single">NVYQLRKDLSFQRGSIYGVQRGGQIPNNTFARSRSNIEQRAVYGLGVRKLSKVNRACVHYRSEEYDIDETKVDPVVSDEGTREXXXXXXXXXXLSPWWKQLPKRWLIVLLCFTAFLLCNMDRVSILFRYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGZ3</accession>
    <name>A0A392QGZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Vegetative incompatibility protein HET-E-1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134397">
        <property type="protein sequence ID" value="MCI23144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:000775">
        <property type="entry name" value="BnaA09g28200D protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045182">
        <property type="entry name" value="JINGUBANG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22844">
        <property type="entry name" value="F-BOX AND WD40 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22844:SF344">
        <property type="entry name" value="MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="82"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="125"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="170"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI23144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="22039" checksum="97306906B62B7216" modified="2018-12-05" version="1" fragment="single">ITNTLESGNGAVKSILVHSDKLFTAHQDNRIRVWKITVNDNNEFQQQKFTHLATLPTFVDRFSKILIPKNHVKIRRHKKCTWVHHVDTVSSLALSRDGTLLYSVSWDRTIKVWKTNDFTCLESVHNAHDDAINAITVSNDGYVYTGSADKKIKVWKKENGEKKHSLVDTLEKHKSGINALALNNDGSVLYSGACD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHG2</accession>
    <name>A0A392QHG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138126">
        <property type="protein sequence ID" value="MCI23833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9640" checksum="B5FEF17A1104920A" modified="2018-12-05" version="1" fragment="single">VISESQTVFVKDRQILDGILIANEVVDEARKSKKELMLFKVDYEKAYDSVDWDYLDAVMGRMSFPTLWRKWIKECVCTATASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6P4</accession>
    <name>A0A392R6P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194062">
        <property type="protein sequence ID" value="MCI32273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6P4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="90"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI32273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15856" checksum="96B947372A52A6F9" modified="2018-12-05" version="1" fragment="single">SDQDKGIRCFECEGFWHIRPECLNYLKKLKKGMTSTLSDSEEEDAEETSNNAFTGKCETSSETSNDDLLDEELAEAHKHFTSKWEQSCQIIEQENIIKKLAQEKDELTSTITELKEEVTLLNSKLTNVTNCEDDEQRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6P6</accession>
    <name>A0A392R6P6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010187914">
        <property type="protein sequence ID" value="MCI31536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6P6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11254" checksum="9CC384926C2E925B" modified="2018-12-05" version="1" fragment="single">IKQDIGVDVPRDMVPPAPTVDLYKPRKRKASAKEGKKELKKEARKEVKKEALKETKPEPQEKKKEESKKRKSDEVVIGGSESRTKRKHEKKAEAEDSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R939</accession>
    <name>A0A392R939_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198292">
        <property type="protein sequence ID" value="MCI32737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R939"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5073" checksum="3AFA0DA81C5E7A69" modified="2018-12-05" version="1" fragment="single">CRAKSADMPLMLGMTSTQFINYSVTMRVRLQNQIYYGGKTQIQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RER1</accession>
    <name>A0A392RER1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010219802">
        <property type="protein sequence ID" value="MCI35061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RER1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5657" checksum="F4BCAE2A6A435515" modified="2018-12-05" version="1" fragment="single">WWCCGNIELGGSSKNPTLVNDESVSSRAEFDDGRLLGCTRGVGQAPWKRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RF38</accession>
    <name>A0A392RF38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010216635">
        <property type="protein sequence ID" value="MCI34742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RF38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="55"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="23"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="26"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI34742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14976" checksum="7E5592159D75EFAA" modified="2018-12-05" version="1" fragment="single">NKSRICDEDGRAKSNYYKVVNNNKRKGQDCAKPYGDKNKRSGESGGGRRKGSGFCYKCGEVGHKSFECPKKEDKCFRCGRLEHRADVCRENVVCFNYGEEGHKSPECKKPKRMIGKVFSLSGEGADQVDNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFC9</accession>
    <name>A0A392RFC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222301">
        <property type="protein sequence ID" value="MCI35323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="115"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="16416" checksum="2592FAB4FBE0CB02" modified="2018-12-05" version="1" fragment="single">YNNFYTPDEYDSYQQCPFENYGQTPYEETPYYYPPEPYEQSTMGSEAYSEARLIDTMTNYMEMQQQMQQPDLQEQMQHMQQFQEENRQYQEQYHARLKNLESKLGQIIEQLAKNNNQGGTFQTNTQTIHDEKENNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RL65</accession>
    <name>A0A392RL65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nudix hydrolase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010240138">
        <property type="protein sequence ID" value="MCI37039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RL65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4478" checksum="E5BA6D99F1EA4E87" modified="2018-12-05" version="1" fragment="single">VEEETGIKLNVEDMVDLTAFLDSSTGRTVFPSPVYIELFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNI0</accession>
    <name>A0A392RNI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone deacetylase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010243619">
        <property type="protein sequence ID" value="MCI37350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7002" checksum="95FE2079492465A9" modified="2018-12-05" version="1" fragment="single">GTKMVKHVISPQIPPVYLNDADRTSGSENPAYTEWEEQDSLLFIATHRCERVLDNSVLNFAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRW2</accession>
    <name>A0A392RRW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010261256">
        <property type="protein sequence ID" value="MCI38907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="8298" checksum="862FA28B292B275A" modified="2018-12-05" version="1" fragment="single">MHKIEYFLAPPLPRNRPPPCHNPHPPRPHHYLCPRPHLHPHPRSPYLPRHLPDPTRSREESRRFQMNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUA3</accession>
    <name>A0A392RUA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010264322">
        <property type="protein sequence ID" value="MCI39156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11469" checksum="4ED6BF7328561A05" modified="2018-12-05" version="1" fragment="single">MRLNPAKCSFGVQAGKYIVSDNGTQFVSEKVVQFCKEKGIQNTFISVEHPQANDQAESANKVILKALKRRLSSKGEAWAAHLSPILWSYHTTPQSSTGEAPFTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWE2</accession>
    <name>A0A392RWE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010280171">
        <property type="protein sequence ID" value="MCI40477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8416" checksum="8A6368B01C85F3AC" modified="2018-12-05" version="1" fragment="single">YELFGPTLFDMSSITGLCTDSEVVSSFVTSNDPIVAYVLGVTALSASIKHHAKTKSVVSGEKHVAFLNYWLSTDGFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXV2</accession>
    <name>A0A392RXV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010279770">
        <property type="protein sequence ID" value="MCI40445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12532" checksum="A835813FB1333D5F" modified="2018-12-05" version="1" fragment="single">MTAHGERLEPVVIVEKVLRSMTPKFNYVVCSIEKSNDVTTLSIDELQSSLLFHEQRMKSQSEKDEEQALKIFDPGRGNVARGRGCGGSRGRGRGRINKEEIECYKCHKLGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1G2</accession>
    <name>A0A392S1G2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301347">
        <property type="protein sequence ID" value="MCI42184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="36"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12745" checksum="211D5354E20996A2" modified="2018-12-05" version="1" fragment="single">SLELTEFDILYESRKALKAQVLADFITEMTTPTTPEKDKWTIFVDGSSDSQGSGAGIILENGEGVLFEVSLELTFLTTNNQVEYEAFLAGLRIVEDMEAEEIKIYTDSQLVASQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S314</accession>
    <name>A0A392S314_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010315271">
        <property type="protein sequence ID" value="MCI43291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S314"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12079" checksum="A3ACBECB88A8E0E4" modified="2018-12-05" version="1" fragment="single">GDNPKIDDITDVGNIVDHVLQSLNEKTLDTDAGSNAETSGTHEDVVEDSLPATPVGNTVSNQLQETEVVITEGKTHPDESESPNSKGVEENVLADKTMEDNTVTVNVEDYVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S356</accession>
    <name>A0A392S356_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010315882">
        <property type="protein sequence ID" value="MCI43331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S356"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7352" checksum="1E8A6D0D72086329" modified="2018-12-05" version="1" fragment="single">MLSGRLQQLGEKKVCICGDFNAVRSAEERRSVNQGLRSYDQISFNRFIDDNDLVDLPLCGRRFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6N4</accession>
    <name>A0A392S6N4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010325938">
        <property type="protein sequence ID" value="MCI44082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6N4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4402" checksum="8A76B82DB9ED6738" modified="2018-12-05" version="1" fragment="single">RVKLKVADIENCGADNNGVAGRGRDCGWSGAICLNGKRQVCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6P0</accession>
    <name>A0A392S6P0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010333046">
        <property type="protein sequence ID" value="MCI44613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6P0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3147" checksum="8E78457D19127CFD" modified="2018-12-05" version="1" fragment="single">MHSCDVALCSALWGSSSIAFSYRPSVGASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBP5</accession>
    <name>A0A392SBP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010349258">
        <property type="protein sequence ID" value="MCI45837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6282" checksum="57FC7261EEE31438" modified="2018-12-05" version="1" fragment="single">SSAALGTPAMEYVEEMSSYAEKLLDGPDNPPKVTTRLLFPSLVLLPSLSHSLSHSVILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SC90</accession>
    <name>A0A392SC90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010352050">
        <property type="protein sequence ID" value="MCI46047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SC90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10445" checksum="0BB1EA41B9FA5278" modified="2018-12-05" version="1" fragment="single">MTDLGKMKYFLGMEVNQSSNGIFIHQQKYAVEILNRFGMENCNTVSSPIVPGCKLVKNDTDKVADSTLYKQMVGSLMYLLASRPDLAYSVCLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFH9</accession>
    <name>A0A392SFH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Polygalacturonase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010375031">
        <property type="protein sequence ID" value="MCI47651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051801">
        <property type="entry name" value="GH28_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31339:SF71">
        <property type="entry name" value="PECTIN LYASE-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31339">
        <property type="entry name" value="PECTIN LYASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8683" checksum="C32F9687D74336A8" modified="2018-12-05" version="1" fragment="single">ISNAPFTGICISNVTIGLAKKTKKVPWNCTDIAGISSGVTPVPCGLLPDQGAENIGSCTFPEYKLPIEDVKVRTCTYRRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFZ5</accession>
    <name>A0A392SFZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010377506">
        <property type="protein sequence ID" value="MCI47821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11316" checksum="E532743357A9AFE2" modified="2018-12-05" version="1" fragment="single">TFFVPGLTPHVAKESEGNRGLSHSESDCGDAKLWRRLFLLGFVVVGDNDDVEVWDMAGILKKRRGLRGKEKKGQFDVVVVLWNLVEEVKMKQTESAVSKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHK1</accession>
    <name>A0A392SHK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010371126">
        <property type="protein sequence ID" value="MCI47336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="53"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12087" checksum="55F0C6373BC89ACC" modified="2018-12-05" version="1" fragment="single">KLEKDIKELKAEYERKLEQLAKDKEEKWAKDRKTFTDEIAHLRAQAATHKNQLASSLKEKDEAISQRDALSKENAALEELVEGLQIEVGARYDTGFQFAIEQLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKG1</accession>
    <name>A0A392SKG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010399950">
        <property type="protein sequence ID" value="MCI49361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7918" checksum="CFF209AC7256A6A1" modified="2018-12-05" version="1" fragment="single">MHLDASAGGSINTKTVEEVKELIEQICQNEYNMNNERSSKHAGVLQLDKETAYLKEIELLKKKLDKASLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SP12</accession>
    <name>A0A392SP12_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010416150">
        <property type="protein sequence ID" value="MCI50409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SP12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7477" checksum="91F65763D16E1AF5" modified="2018-12-05" version="1" fragment="single">GIDFMGPFPPSNSNLHIVVCVDYVTKWVEAQACKANDAKTVVNFLKKNIFTRFGVPRVLISDGGEALH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQB4</accession>
    <name>A0A392SQB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010416010">
        <property type="protein sequence ID" value="MCI50404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10168" checksum="3ABACB4330734B4C" modified="2018-12-05" version="1">MKIKMEILNFALNRKVDPIVDIGNAAAMIIIKKFRDIVLNVEEKSVDGMRTKRVFSRVQNGFDELVKVMNVLARIEFLVDEVKCGNMTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SU00</accession>
    <name>A0A392SU00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">HemK methyltransferase family member 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic/archaeal PrmC-related family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430444">
        <property type="protein sequence ID" value="MCI51346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SU00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035657">
        <property type="term" value="C:eRF1 methyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052190">
        <property type="entry name" value="Euk-Arch_PrmC-MTase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45875">
        <property type="entry name" value="METHYLTRANSFERASE N6AMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45875:SF1">
        <property type="entry name" value="METHYLTRANSFERASE N6AMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI51346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7715" checksum="60358B04FE744BD1" modified="2018-12-05" version="1" fragment="single">PHAVKVTHETMEAHGVNAELILTNIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGHTLVGKRMVVYGNSPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SU99</accession>
    <name>A0A392SU99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010437441">
        <property type="protein sequence ID" value="MCI51794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SU99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3401" checksum="1A976FD7404995EF" modified="2018-12-05" version="1" fragment="single">MGSNMFDGLAGESQPIDTPVLEDYWDALIQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SX24</accession>
    <name>A0A392SX24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010459997">
        <property type="protein sequence ID" value="MCI53229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SX24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5492" checksum="4C5DF653594CC76F" modified="2018-12-05" version="1" fragment="single">MKEISFLGHVISSEGIVVDPAKVNAVLQWGTPESVAEIRSFLGLAGYYRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6N9</accession>
    <name>A0A392T6N9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010517051">
        <property type="protein sequence ID" value="MCI56728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6N9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4671" checksum="C2446F39A6BC463E" modified="2018-12-05" version="1">MRNCVVEDIGWCSPDVGWVRLNTDGTVKGGINVGCGGVLRGGHGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7K9</accession>
    <name>A0A392T7K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010518015">
        <property type="protein sequence ID" value="MCI56772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4778" checksum="F14FC04B1CCE280B" modified="2018-12-05" version="1" fragment="single">WDIWLCFIIWFSINPFRVVFVAIGVWVVTTAAGLVSVPDLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T914</accession>
    <name>A0A392T914_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010522126">
        <property type="protein sequence ID" value="MCI57004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T914"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="9762" checksum="86E3E3ABBCC4A740" modified="2018-12-05" version="1" fragment="single">DELIKIVADQNVTKKGKIKVKSRTGAVLGQFVAGGSSSPGGVSSSQVGVQSGSPVVVKPPPTKRQRKELPIDVDTMEKPFPLPRCFGSRDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAK6</accession>
    <name>A0A392TAK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010524272">
        <property type="protein sequence ID" value="MCI57156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008507">
        <property type="entry name" value="DUF789"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343">
        <property type="entry name" value="T15D22.8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343:SF42">
        <property type="entry name" value="T15D22.8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05623">
        <property type="entry name" value="DUF789"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10484" checksum="4FCF4ED62FEA0E27" modified="2018-12-05" version="1" fragment="single">FFHRQLGEDSDSDFRDSSSDGSSDCEPVRGYREQRNLPHLSDEVSHWMGRLSVRNQHSLPQDGFSSDDGESVNSQGYLLFEYLERDPPYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TC34</accession>
    <name>A0A392TC34_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Copia-type polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010548860">
        <property type="protein sequence ID" value="MCI58588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TC34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="57" mass="6792" checksum="DFE1286027BCAB57" modified="2018-12-05" version="1" fragment="single">MFSSKDDPVNYNEAVKSKMWRIAMDQEIESIEKNDTWELVTLPKEARKIGVKWIYKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN57</accession>
    <name>A0A392TN57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010602351">
        <property type="protein sequence ID" value="MCI61580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9156" checksum="F16C90600B5930D4" modified="2018-12-05" version="1" fragment="single">SPEKQTGTKDNAVDVEIVSSEKRNLKETPKPCIARRTRNRSGKAASTVGENTKSPKQGKKTSDFSGLKPVLYGPKRTWSKGTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNN0</accession>
    <name>A0A392TNN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010615519">
        <property type="protein sequence ID" value="MCI62244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7235" checksum="2F039AD2C619A484" modified="2018-12-05" version="1" fragment="single">MVQQKKEKPECYKIDLVETLVEGQLEASKPGIDQVLLQSLENKEVGLDEETNLSVRWLSNEVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP48</accession>
    <name>A0A392TP48_9FABA</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010609021">
        <property type="protein sequence ID" value="MCI61916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4371" checksum="91D319D8D6C44F78" modified="2018-12-05" version="1" fragment="single">AAAILTNGRHLTPQLSSFAFPHSPPPNTTVLLLLLSRSSLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPA0</accession>
    <name>A0A392TPA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010629422">
        <property type="protein sequence ID" value="MCI63019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2591" checksum="71BD913EF8CAA75D" modified="2018-12-05" version="1" fragment="single">ISPETLKLPDLASPGARPAKGSDRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR04</accession>
    <name>A0A392TR04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010636638">
        <property type="protein sequence ID" value="MCI63412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3598" checksum="0398C9F16F5557C7" modified="2018-12-05" version="1" fragment="single">PEGSRLAMVFSVGDVFVLLQFDSVPLWFWVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTW4</accession>
    <name>A0A392TTW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010657532">
        <property type="protein sequence ID" value="MCI64512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6713" checksum="AB5CE61444B0F356" modified="2018-12-05" version="1" fragment="single">MDKEDKEEPDGKMVKKELRQNGTEKEGSEDHVLGHKGGASQKQREMTWTRQWKRQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXU0</accession>
    <name>A0A392TXU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010680760">
        <property type="protein sequence ID" value="MCI65708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2262" checksum="5C486F530833EF63" modified="2018-12-05" version="1" fragment="single">GAIVACGFAAVYTGGGVDSDCELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U028</accession>
    <name>A0A392U028_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010701947">
        <property type="protein sequence ID" value="MCI66771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U028"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7049" checksum="25B531FB74FEAE5F" modified="2018-12-05" version="1" fragment="single">MLNPVLVAGRDQARESDRTSESSSLQREKATGHHKNPRIPGFRERESDRSLASSLEWSLGDQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0H1</accession>
    <name>A0A392U0H1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010705554">
        <property type="protein sequence ID" value="MCI66943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0H1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3869" checksum="0FCB5D2E6A796D58" modified="2018-12-05" version="1" fragment="single">MASFWRDMTRAATRVRAAKNAKKKTSETANAGTPSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6A9</accession>
    <name>A0A392U6A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010713184">
        <property type="protein sequence ID" value="MCI67275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4859" checksum="CA4FEFE7DC8F02B4" modified="2018-12-05" version="1" fragment="single">EEEEEEEEEEEEEEEEEEDGGRVIDEEEEEDDELQLALFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8E6</accession>
    <name>A0A392U8E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010749418">
        <property type="protein sequence ID" value="MCI69107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6338" checksum="B11935A2DCB4F6FB" modified="2018-12-05" version="1" fragment="single">DDIPEGMFTDISSSEDWEVRISGLSRRICTAWDWGTIPMYQIVFEEWTSGCPLPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UF03</accession>
    <name>A0A392UF03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I AFP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010787319">
        <property type="protein sequence ID" value="MCI70996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UF03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016172">
        <property type="term" value="F:antifreeze activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000104">
        <property type="entry name" value="Antifreeze_1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00308">
        <property type="entry name" value="ANTIFREEZEI"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0047">Antifreeze protein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI70996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="6755" checksum="BF2A68612677C966" modified="2018-12-05" version="1" fragment="single">ATTAATAAAAATAATAATAAATAATAAATTTAATAATATAATATATAATATATTATTATATATATATAATATATTATTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFV9</accession>
    <name>A0A392UFV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010818086">
        <property type="protein sequence ID" value="MCI72439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5301" checksum="CD408D7F076C7243" modified="2018-12-05" version="1" fragment="single">MGNPNPYNSGWRDNQTPRWNQTQQSQQPRKPSPLEEALNQFIKMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJD9</accession>
    <name>A0A392UJD9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010841627">
        <property type="protein sequence ID" value="MCI73582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJD9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5795" checksum="305281572340C6F4" modified="2018-12-05" version="1">MLSPWLSEVKASPASLSEDSIAKWAEEAERCWCTHYEQIVIKNQALDATVGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULA0</accession>
    <name>A0A392ULA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010819635">
        <property type="protein sequence ID" value="MCI72515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4659" checksum="062E58925D61C69E" modified="2018-12-05" version="1" fragment="single">PTTVASDGMTRTEEWSSCECDDARWSGRDRRRDLERWKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPW0</accession>
    <name>A0A392UPW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010888840">
        <property type="protein sequence ID" value="MCI75689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7723" checksum="5B583A887E51667C" modified="2018-12-05" version="1" fragment="single">MADQLMQLMRLFNEDHEEEPQPRQPRRRNRNGTRAVARRHDGTPHMEGLINNNGYVQGNGNGSIILGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY18</accession>
    <name>A0A392UY18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011006261">
        <property type="protein sequence ID" value="MCI80916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4377" checksum="5753E24C12EF08F6" modified="2018-12-05" version="1" fragment="single">MIMQGEDINLGYLLQHDIKRMESNDAAVFTLGHCNLITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYY5</accession>
    <name>A0A392UYY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010987376">
        <property type="protein sequence ID" value="MCI80081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2763" checksum="E33BB2C0303388D7" modified="2018-12-05" version="1" fragment="single">MTYEQALRLTTATSFWSEGRVPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0B5</accession>
    <name>A0A392V0B5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011000798">
        <property type="protein sequence ID" value="MCI80679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0B5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4103" checksum="9111044AE5CA7B51" modified="2018-12-05" version="1" fragment="single">VGFLDLLPLQVQFRDLLLDTDLGCCSRYCEIFGLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5D2</accession>
    <name>A0A392V5D2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011048025">
        <property type="protein sequence ID" value="MCI82623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="6972" checksum="B67141A19AABC31C" modified="2018-12-05" version="1" fragment="single">PAQNQNNGAAGGCEVEPDVAHAVLLTVVVAVVLLLLPGLPVTPSMPSEKMYDLEVAQRWLSHQCPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8D4</accession>
    <name>A0A392V8D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011069324">
        <property type="protein sequence ID" value="MCI83529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8303" checksum="CFBAF4B25F74645A" modified="2018-12-05" version="1" fragment="single">NSIGSPNPVDLDARLTKKEREKEKQKDKEPGTEKIYRPIPDWDFEITPLDEDPSKGIKIGTGLPDMVKRQLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8K9</accession>
    <name>A0A392V8K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011071090">
        <property type="protein sequence ID" value="MCI83609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5172" checksum="359D4BD6B9E9D972" modified="2018-12-05" version="1" fragment="single">MEDGVILLSSLFVDETEIVRFEGPREELFGLLLEGAAECTVISVVGMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VB40</accession>
    <name>A0A392VB40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Subtilisin-like protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118181">
        <property type="protein sequence ID" value="MCI85548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VB40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045051">
        <property type="entry name" value="SBT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10795">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="5">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI85548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6539" checksum="62838DEFBBDF54E1" modified="2018-12-05" version="1" fragment="single">MSCPHISGLAALLKAAHPTWSPSAIKSALMTTAYIHDNSKSPLRDAADRSFSTPWAHGAGHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VC64</accession>
    <name>A0A392VC64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093014">
        <property type="protein sequence ID" value="MCI84521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VC64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6679" checksum="F13E8C28A28A8DBF" modified="2018-12-05" version="1" fragment="single">MCIRDEFCAFVLARYDQFTLSLLSALAWVHELNLGPVDFELDSKKVVDMFHARTQDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF56</accession>
    <name>A0A392VF56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011154902">
        <property type="protein sequence ID" value="MCI86994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="9"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4770" checksum="DD436059A568AF69" modified="2018-12-05" version="1" fragment="single">KGAVASTSAEPHAQPQPEAQQEAEAPPEFEPQHEAEVEQDMDVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF62</accession>
    <name>A0A392VF62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011119385">
        <property type="protein sequence ID" value="MCI85601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2926" checksum="65C4740960AB9B34" modified="2018-12-05" version="1" fragment="single">FMQSKALAFKALALNARGRWDSCLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VKZ6</accession>
    <name>A0A392VKZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011156809">
        <property type="protein sequence ID" value="MCI87070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VKZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="11"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2944" checksum="C68B5BF783618D98" modified="2018-12-05" version="1" fragment="single">SNTMLHTPQHASSSPATKSPFSSLETSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLU9</accession>
    <name>A0A392VLU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011216444">
        <property type="protein sequence ID" value="MCI89316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="51"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7075" checksum="90D599B3DCA54F61" modified="2018-12-05" version="1" fragment="single">PPPNPDPPPTPPPPPNPPPLPPPKPPPPPSPLPAPAPAPNPPHEPPPNPPTTSATKTTTSSCTSTVSWTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUK8</accession>
    <name>A0A392VUK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011235593">
        <property type="protein sequence ID" value="MCI90120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3254" checksum="DCF1C2F8C5BE110E" modified="2018-12-05" version="1" fragment="single">AQVEQSQQPLTEPKVYVIASSEDSQPPLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYX6</accession>
    <name>A0A392VYX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011328137">
        <property type="protein sequence ID" value="MCI93396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4085" checksum="6E49354A4DC28695" modified="2018-12-05" version="1" fragment="single">MSSSSQGSMGSNMFEGLVGESQPDDNPDLEDYWDAMIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W247</accession>
    <name>A0A392W247_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011325435">
        <property type="protein sequence ID" value="MCI93301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W247"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2958" checksum="FA698718B3F2AD91" modified="2018-12-05" version="1" fragment="single">MLSREMTVELMEKLKAPVEAPVRDQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7U3</accession>
    <name>A0A392W7U3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397371">
        <property type="protein sequence ID" value="MCI95812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7U3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5527" checksum="663D67C353BAD1C4" modified="2018-12-05" version="1" fragment="single">MSINAFPVVRNGLPKRIGASSSSSMSMITKSAGKIVSYTLTSTSSKIPCGYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7W6</accession>
    <name>A0A392W7W6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011422657">
        <property type="protein sequence ID" value="MCI96734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7W6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5327" checksum="87B049B7F8D09B96" modified="2018-12-05" version="1">MARNDDDEGSVMLLVTTRDESDYQEKWYLDTGCLTAVWQVDQSIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9A5</accession>
    <name>A0A392W9A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011436183">
        <property type="protein sequence ID" value="MCI97214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4175" checksum="E58CC7BCB929DF40" modified="2018-12-05" version="1" fragment="single">MAGVNNNVHEKMAENSLAPEYGPNQNDGQFALVTGDDQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9Q5</accession>
    <name>A0A392W9Q5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011391261">
        <property type="protein sequence ID" value="MCI95585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9Q5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6388" checksum="62A56FC336046428" modified="2018-12-05" version="1" fragment="single">VGSPNPVDLDARLTKKEREEEKLKDNEPGTEKIYRPIPDGDFEIIPIGEDPSKGIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MYZ2</accession>
    <name>A0A392MYZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">IQ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023432">
        <property type="protein sequence ID" value="MCH92776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MYZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="147"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="159"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="198"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="25753" checksum="224E01D383581AB4" modified="2018-12-05" version="1" fragment="single">MLASSPHAFPLSFNTDLGEPYLAWKWLDRWTRSHFWASLPKLKKLDSVSDEKNISCQTAEKGQVKRNTRKSPAVKADDGSSSGSNKYKQRPKKDSNHSLVSAQEYPKKDIEKSTLKKTRMQNISDRSEAVNEKRKLSSRTTTDHNVTDVSEQGPNSSSEKLKDTMVPKSEESYPERVLGQKTPEENNDKPKKSLNGGVKEEKGLGQKTLEENNDKPKKSFNGITKEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1D4</accession>
    <name>A0A392N1D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phospholipid-transporting ATPase 9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023967">
        <property type="protein sequence ID" value="MCH93009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140326">
        <property type="term" value="F:ATPase-coupled intramembrane lipid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045332">
        <property type="term" value="P:phospholipid translocation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092:SF70">
        <property type="entry name" value="PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24092">
        <property type="entry name" value="PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13246">
        <property type="entry name" value="Cation_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH93009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="348" mass="39705" checksum="F8CA05AAEE944805" modified="2018-12-05" version="1" fragment="single">MDKVIYCLFFVLILVSFIGSIFFGIWTKKDTKNGRMKRWYLNPDHTEVYYDPDRAVLAAILHFFTALMLYGYFIPISLYVSIEVVKVLQSIFINNDLNMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRGFTEVERALSKRKDSYFGRKMKNDKNVAKAAESKSTIKGFNFMDERIMNGNWVRQPNANVIQSFLRVLAVCHTAIPEVDEATGKISYEAESPDEAAFVVAAREFGFEFYERTHSAISLHELDLNSNVKSERSYNILNVLEFSSARKRMSVIVRDHKGKLLLLSKGADSVMFELLGKNGREYEEQTKYHINEYADSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEP2</accession>
    <name>A0A392NEP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010037189">
        <property type="protein sequence ID" value="MCH98280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13650" checksum="9A5CFA444F2EB87C" modified="2018-12-05" version="1" fragment="single">GNQFQAVKSRFVRDCQKLTLTSASITHSYFTFNEIGTLRTIGHELRCLFKPLEHESDLESVENAGIEQLPSAETTEDFELPSVENVPDLTILPTNSEELLVEQSMDQQHSLGESDTVVKPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI24</accession>
    <name>A0A392NI24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin carboxyl-terminal hydrolase 16-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040426">
        <property type="protein sequence ID" value="MCH99480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="86"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="19418" checksum="055D2E3B3CE94F41" modified="2018-12-05" version="1" fragment="single">SGKCQIAHWRQGHKDKCHPPSTARQTDDLVSNISKKLAKPDHHGFNDEKSRIERTDNARVESPAEENITDSNSELSCNSFSGFSASTGANGSSSSDDSSVCESIISNEHERSEGPICTDHTFDVSDNTSNGHSIGATIPLSPKFASLVDSARPGIGKEEIKLTSNDSSGLMMQKGGTEPSKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL70</accession>
    <name>A0A392NL70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042326">
        <property type="protein sequence ID" value="MCI00134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11932" checksum="509EB988E707D4EA" modified="2018-12-05" version="1" fragment="single">QLSPDLSHQMKLLNIKEENKALWVRRRGKNRKVAARLKFGVNMEPVKKPSRENLKVRFRKIIDKDSRSERWANIPRKVNEEKSKKKTWIKGDQPREWDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NP30</accession>
    <name>A0A392NP30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042657">
        <property type="protein sequence ID" value="MCI00245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NP30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="35"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13555" checksum="D37D48A3D96595CC" modified="2018-12-05" version="1" fragment="single">FVILKAFNVKIHPPNTPKIKEILWHPPLTSWTKCNSDGAAHGSPGNAACGGVFRDYQANFLGCYAFNIGVTYALLVELMGAILAIEIAFEKGWHRLWLEIDSQLVTLAFKQHHIISWTLHN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NU57</accession>
    <name>A0A392NU57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051940">
        <property type="protein sequence ID" value="MCI03367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NU57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4600" checksum="FB295195E220B62A" modified="2018-12-05" version="1" fragment="single">HGGAMMDISGGFLENRYGQFVKDGGATAQFWLSSVSNITSYQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUX0</accession>
    <name>A0A392NUX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sacsin-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048605">
        <property type="protein sequence ID" value="MCI02275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030544">
        <property type="term" value="F:Hsp70 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058210">
        <property type="entry name" value="SACS/Nov_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052972">
        <property type="entry name" value="Sacsin_chaperone_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15600">
        <property type="entry name" value="SACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15600:SF42">
        <property type="entry name" value="SACSIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25794">
        <property type="entry name" value="SACS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacsin/Nov" evidence="1">
        <location>
            <begin position="14"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI02275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="16978" checksum="A5CD29A884559705" modified="2018-12-05" version="1" fragment="single">WWQAVHSLRTLGIILQAKGEYQGPGLVAIFEGACLSREEFSNFQLLPPWRLRGNTLNNGLGLVCCYSICDLLSVVSGGYFYMFDPRGLVLAALSTNAPSAKMFSLTGTDLKQRFHDQFSPMLIDHNDLWSSSDSTIIRMPLSSDSLKIGSDLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P277</accession>
    <name>A0A392P277_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060955">
        <property type="protein sequence ID" value="MCI06161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P277"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5561" checksum="FD62533873E4FC43" modified="2018-12-05" version="1" fragment="single">MIIFRVVEVDSAMEDEQRSKAVVLLGEENFGSGYKLMNSAKITRAKAIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P5R6</accession>
    <name>A0A392P5R6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-binding protein 25-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010064147">
        <property type="protein sequence ID" value="MCI07084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P5R6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34210:SF3">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34210">
        <property type="entry name" value="OS01G0252900 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11582" checksum="BBD24076E520A25A" modified="2018-12-05" version="1" fragment="single">YGNSAPRGRSSQSRSPRQAPHSGNSYNSFDGRSHNMSTYKNDGWDSHRRESGIQPGQQFDHNALPQSLEELELEYKKEAMELMKIRDREEDEENFQHRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PET0</accession>
    <name>A0A392PET0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">26S proteasome regulatory subunit 4A</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">10/8</strain>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072427">
        <property type="protein sequence ID" value="MCI09375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010084453">
        <property type="protein sequence ID" value="MCI12509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PET0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002861">
        <property type="entry name" value="Cell division control protein 48 homolog E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050221">
        <property type="entry name" value="26S_Proteasome_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23073">
        <property type="entry name" value="26S PROTEASOME REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0647">Proteasome</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI09375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9694" checksum="C88804EB6C246D1D" modified="2018-12-05" version="1" fragment="single">MCLTGYNIVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG72</accession>
    <name>A0A392PG72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">40S ribosomal protein S18-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074220">
        <property type="protein sequence ID" value="MCI09885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="entry name" value="30s ribosomal protein s13, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="Rbsml_uS13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_uS13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_uS13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_uS13_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="S13-like H2TH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI09885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3985" checksum="F4E921E39154EBA0" modified="2018-12-05" version="1" fragment="single">NHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMR8</accession>
    <name>A0A392PMR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein LONGIFOLIA 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088080">
        <property type="protein sequence ID" value="MCI13391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051513">
        <property type="term" value="P:regulation of monopolar cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033334">
        <property type="entry name" value="LNG1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31680">
        <property type="entry name" value="LONGIFOLIA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31680:SF4">
        <property type="entry name" value="LONGIFOLIA PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5526" checksum="420C84ACB4589917" modified="2018-12-05" version="1" fragment="single">MAAKLLHSLADDNQDLQKQIGCMTGIFQLFDRHQMLTARRISQKRLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNZ1</accession>
    <name>A0A392PNZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TNF receptor-associated factor family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088370">
        <property type="protein sequence ID" value="MCI13472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10539" checksum="1F7358CDCB461649" modified="2018-12-05" version="1" fragment="single">MDLPTIDVDLEVPKKIEEDEKKEGPLFHCSLCDTEVIHKLAQMFLPGLASACVDNTTGGLFKTPGSVAVDLRREMIDYLTLRTESFVAESVILEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSX6</accession>
    <name>A0A392PSX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093048">
        <property type="protein sequence ID" value="MCI14599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000111">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27004">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN 12 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27004:SF460">
        <property type="entry name" value="RECEPTOR-LIKE PROTEIN 33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00019">
        <property type="entry name" value="LEURICHRPT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI14599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21948" checksum="39925B90F33425E7" modified="2018-12-05" version="1" fragment="single">MIQRWKTMKTCSTSQLQYEQEAFYFQSLNYKGYWTETDPYSFTISNKGLVMVYNRLQEFFNMIAIDFSSNKINGEIPQVIGDLKGLVSLNLSNNILIGNIPSSLGKLSNLESLDLSLNKLSGKIPQQLTQLTFLEFLNVSFNNLSGAIPQNKQFATFLDNSFEGNKDLCGDQLSHKCLDHARPSFSSPSASDDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSY7</accession>
    <name>A0A392PSY7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093801">
        <property type="protein sequence ID" value="MCI14792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF54">
        <property type="entry name" value="RETROTRANSPOSON-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="50"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18056" checksum="DA4A97EAF14F9764" modified="2018-12-05" version="1" fragment="single">IGAVAYKLQLPVEARIHPVFHVSQLKPYIGTASTPYMPLPLTTTALGPILQPEAILDNRTVVQGSEASHHVLVKWCNVDEAHATWEDTLQFAEEYPTFNLEDKVSVNGGSIVRTSLDNTGPHHAANKENEGIKSVMHVPHNQEGRGQRNKFVSTRLRDYIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVW4</accession>
    <name>A0A392PVW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BZIP domain class transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097322">
        <property type="protein sequence ID" value="MCI15639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11224" checksum="A371CE660274A074" modified="2018-12-05" version="1" fragment="single">CSDWEDCYGSTSSSDREEEIDGLKSSVKPESVTGGDIPARKDEKIGEVKEEKVMMKHKDLKEIVEAIRENFEKAAVAGDELSEMLQISRAQLDRSFSQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWG2</accession>
    <name>A0A392PWG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099639">
        <property type="protein sequence ID" value="MCI16154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16497" checksum="08B75CD48E681F3C" modified="2018-12-05" version="1" fragment="single">VQRGKELRHSGITVCSSGSCASRRLRWRVAQVNQVVEGNLLEVARRAGWIGATRQYKIQAERVVTDTCASRRTDGAARQHGKLCRIVHSIEEKLLQFNHIPKYLSLSNSYTRKSSSPTQNSSLNFTPNLTNYSKPILHHFYSSITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXL8</accession>
    <name>A0A392PXL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">B3 domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102760">
        <property type="protein sequence ID" value="MCI16858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12885" checksum="5EB574FF51E08A29" modified="2018-12-05" version="1" fragment="single">MATKRKNIFSVTDDVCLCLSLGGSHACRFPSCCETFHQTHFAKKPKLALQGNNICNVGAAVPVARRARNWAFSTALVLYDDPWRIKKVLTQSDLGNNCNILIKRELAKDLIVPVLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXN3</accession>
    <name>A0A392PXN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100138">
        <property type="protein sequence ID" value="MCI16279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5796" checksum="FE0FCEBBBE6CAD28" modified="2018-12-05" version="1" fragment="single">SRCICGFRHRCWVLVKRRIGGERDLEGLGFGEDGNVMELLKSGGSDGGGDEGNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZ98</accession>
    <name>A0A392PZ98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SANTA (SANT associated) protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103693">
        <property type="protein sequence ID" value="MCI17057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZ98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="12760" checksum="799DAD307E5704FF" modified="2018-12-05" version="1" fragment="single">YIQLVVLIVVAGEENSIPTPLVFPEEGPGECNKPSAADKCKVSKETSGVDVAYGSNGNKRCTRLYNIKVGQQKQQPASGGPLKRPDIEQSSTSMEVENHDSDTTVFNNVSANLPEISPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q062</accession>
    <name>A0A392Q062_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell division control protein 48 C-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101723">
        <property type="protein sequence ID" value="MCI16625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q062"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055278">
        <property type="entry name" value="CDC48c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470:SF1">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="2">
        <location>
            <begin position="170"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI16625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="208" mass="23385" checksum="8F072833026A5FCA" modified="2018-12-05" version="1" fragment="single">MSKMKRRRNIETLCDHINSCKSKHSTADEIVKHLRSKHYREYQRIGDKKLLPLVKAALKSINNDDDRSDSSPKRHKKIMDDEEDRLQKKEETSLHNKSSMSCDSVLASGSEFNNGGENVMNDVNVRKDGPRFKDLGGMEEVIEELKMKILMPLFNPKLCSKIGVKPINGLLLHGLPGCGKTKLAHAIAYETGFNFYPTSATQLVSGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3F0</accession>
    <name>A0A392Q3F0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110018">
        <property type="protein sequence ID" value="MCI18412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3F0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2295" checksum="3084466252DB2D4D" modified="2018-12-05" version="1" fragment="single">KFDVPASSPAATGTDHIAPAFHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8F3</accession>
    <name>A0A392Q8F3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119772">
        <property type="protein sequence ID" value="MCI20424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8F3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12089" checksum="CC614440E480CD50" modified="2018-12-05" version="1">MGSAARQHDLTQDLTVMMRVMETVLVLNDEQGDSNREMVKLRTRNEKLEARALKLDGELTDLRGKQENFAAQAKELREMHEALGKARKDLVDQEGRHAEEKKSLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBI5</accession>
    <name>A0A392QBI5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Reverse transcriptase/retrotransposon-derived protein RNase H-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123947">
        <property type="protein sequence ID" value="MCI21239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="31"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI21239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13421" checksum="CEA86C14327E9A73" modified="2018-12-05" version="1" fragment="single">MLTSLSRFVAKSAQHALPLFKLLRKEAAFEWTEECEQVLQYLKKALSEPPVLSRPNDEEVLYLYFAVTSEAVSAALIRETTEGQKPVYFTSKALKGPELRYQLVEKIALALVYAARRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCL9</accession>
    <name>A0A392QCL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124125">
        <property type="protein sequence ID" value="MCI21276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="83"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="109"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="19747" checksum="12928202FC4F8EE1" modified="2018-12-05" version="1" fragment="single">IVPEEEDVETILKRRVKVDNFPIFTQLDPLEVLEDYLRRCKAEGINPLVDPKNLPARPPNTLKRKKKDIKPKETAMAKQEKPSSSSSITTNSATSSLRIKSASKRRKYTIHDLEETSEEKNSSSTEVNLLSNPGKSPALSNNVTISKNLVNPSTTNKELKLGSMAAHYEENMTIKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDY2</accession>
    <name>A0A392QDY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative inactive leucine-rich repeat receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128411">
        <property type="protein sequence ID" value="MCI22062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046959">
        <property type="entry name" value="PRK1-6/SRF4-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48007">
        <property type="entry name" value="LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48007:SF76">
        <property type="entry name" value="OS03G0145102 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI22062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15767" checksum="922C0C56ADC634AF" modified="2018-12-05" version="1" fragment="single">MVSVFSADDPVFNDEIMGLIVFKAGLQDPNHKLISWNEDDYTPCNWEGVKCDSSNNRVISIVLDGFSLSGHIDRGXXXXXXXXXXXXXXXXXTGFINPDLPKLGNLQVVDFSYNNLKGSIPEEFFQQCGSLKTVNFAKNNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJ78</accession>
    <name>A0A392QJ78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transaldolase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135551">
        <property type="protein sequence ID" value="MCI23345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJ78"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018225">
        <property type="entry name" value="Transaldolase_AS"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01054">
        <property type="entry name" value="TRANSALDOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7662" checksum="2DAE988421B5940A" modified="2018-12-05" version="1" fragment="single">MNNSNVTSTRTILHDLYEKQRQSPYYDNLCRPISDLVPFIASGIKGVTTNPAIFEKAISLSNAYNQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLU4</accession>
    <name>A0A392QLU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010143760">
        <property type="protein sequence ID" value="MCI24822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6645" checksum="D1DE3BCC03694748" modified="2018-12-05" version="1">MVMKELPVTIDECSRRMQEGSRMQSPYTCPAGPSSNDAPIPIIIVDQIQRLTSKAIKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRF6</accession>
    <name>A0A392QRF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153130">
        <property type="protein sequence ID" value="MCI26414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5459" checksum="4B96179E990111AE" modified="2018-12-05" version="1" fragment="single">TCAPLQKAEQRVELLNFRLFCPRYLRGAQEGLSPAQNTVHRLTNVDFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRJ3</accession>
    <name>A0A392QRJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UDP-glucose flavonoid 3-O-glucosyltransferase 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153599">
        <property type="protein sequence ID" value="MCI26492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050481">
        <property type="entry name" value="UDP-glycosyltransf_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48048:SF45">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="19584" checksum="B4C8B2C81459933D" modified="2018-12-05" version="1" fragment="single">MKKAEVVFIPSPGVGHLVSTLEFAKLLINRDNRLRITVLVIKFPHTTETDVYTKSLPNTDSLNVINLPECSLPPNSSPGPAMNALLEAQKLNVKQAVSNLTTGEQHGHLAAFVVDMFCTSMIDVAKEFSVPAFVFFTSGVAFLGLNIHIHNLFERDNVDSTQLLQLTELAIPSFANLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUN4</accession>
    <name>A0A392QUN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158160">
        <property type="protein sequence ID" value="MCI27236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7065" checksum="60D9D7DB8F0A6375" modified="2018-12-05" version="1">MPLKRPGSFFSCSPIGEAAATVTKKIQAMEKQAIEDMVLESTWVGDSKMPSAAVTRTQPVLESIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUN6</accession>
    <name>A0A392QUN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">WD repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163503">
        <property type="protein sequence ID" value="MCI28091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051362">
        <property type="entry name" value="WD_repeat_creC_regulators"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14107:SF16">
        <property type="entry name" value="AT02583P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14107">
        <property type="entry name" value="WD REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI28091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10577" checksum="248F3296B676956F" modified="2018-12-05" version="1" fragment="single">MSSSVANPNFDGKGSYLIFNVGDAILISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLFSGDVYSVSLRQQLQDVGKKIVGAHHYNKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QY35</accession>
    <name>A0A392QY35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167908">
        <property type="protein sequence ID" value="MCI28774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QY35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10774" checksum="C209F8F761891309" modified="2018-12-05" version="1">MRGEPIRVGEMIARSIKRMITSADSYIGHPFVITTLFQRLHAPTEDDEIAIPLNPLGRVFFRRALRDLEAATTSPQPPPLAPHHQTAGASEPCSGCLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYW3</accession>
    <name>A0A392QYW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication factor-A carboxy-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010171125">
        <property type="protein sequence ID" value="MCI29217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10350" checksum="DB3279E748BD35A5" modified="2018-12-05" version="1" fragment="single">QVGSSVVKGKAKEIILEGTPVGQTQALMKNMSSVVVNLGDDDLGNEKTPNQVKLNESKVSKIKKVVKRVSPQQEDEDDNAPIKLLKRAVKIEKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZT2</accession>
    <name>A0A392QZT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168117">
        <property type="protein sequence ID" value="MCI28795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12053" checksum="53361D42299CF965" modified="2018-12-05" version="1" fragment="single">LRTIESQLQALTESINTQIQNQLNQLTETVAGHSQSITDTASVLTRMETLLQTLTDKAVTHGQASQSRPPPTMPSHNVKLEFPRFDSSHAMEWLFRANQFIVTTIYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0V4</accession>
    <name>A0A392R0V4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF7746 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172632">
        <property type="protein sequence ID" value="MCI29446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0V4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056648">
        <property type="entry name" value="DUF7746"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33054">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33054:SF9">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24925">
        <property type="entry name" value="DUF7746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7746" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11063" checksum="18761853C2CB077B" modified="2018-12-05" version="1" fragment="single">MLMYSTVCKQHDNEDHGIAPFITAGFIGQLKGWWDNYLSDKQRNEVLTHKKVKSEVGTSTTQPMAIEEQDAVYTRCLAILHHFVGSSVPISEKLNTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4B2</accession>
    <name>A0A392R4B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010184481">
        <property type="protein sequence ID" value="MCI31077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4B2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3092" checksum="E3333CE2C9FDF01F" modified="2018-12-05" version="1" fragment="single">NATSTVPVDELDVPNVEECDDEGGGDDGQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R856</accession>
    <name>A0A392R856_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198894">
        <property type="protein sequence ID" value="MCI32808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R856"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7109" checksum="45D15E518D099014" modified="2018-12-05" version="1" fragment="single">MGDVAGRYTWQDMSGWCGADGAGSVTWHMACLGFFLCKDVKTENDAWSAYVPSAMARAAVKFRIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R947</accession>
    <name>A0A392R947_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198636">
        <property type="protein sequence ID" value="MCI32779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R947"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF57">
        <property type="entry name" value="OS12G0499874 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="2">
        <location>
            <begin position="8"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="80"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI32779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="127" mass="14802" checksum="0C4E30E9E6D28F4A" modified="2018-12-05" version="1">MLNLRGVFKTKKLCPRYVGQFQIIERVGEVAYRLALPPRMSGMHDVFHISQLRKFVPDSSVTVGLESIELEPNMTFKPQPARIVDREVRNLRNRSIPVVKVIWEGSPDGEDTWELESEMLRHYPHLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAA1</accession>
    <name>A0A392RAA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205477">
        <property type="protein sequence ID" value="MCI33568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11855" checksum="EBEC7D81835A177D" modified="2018-12-05" version="1">MELPLKGRMLEMKGTKLVAIKWINNKIYTHTAHQRIHICILYLDTFNNQLEVIECKIHMVYAMDAQKWRNLLPKHGSRKFAANVDLVVAILHRKMIEKGKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC54</accession>
    <name>A0A392RC54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD-dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010203851">
        <property type="protein sequence ID" value="MCI33370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RC54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.50.60:FF:000360">
        <property type="entry name" value="FAD-dependent oxidoreductase family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847:SF150">
        <property type="entry name" value="OXIDOREDUCTASE TDA3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847">
        <property type="entry name" value="SARCOSINE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="2">
        <location>
            <begin position="41"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI33370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12366" checksum="FD7729C1FB644397" modified="2018-12-05" version="1" fragment="single">MNLAAGITHSTLKQFPQSRIRNPSINSLQSQPSPMADPPKKVVVCGGGVIGVCTAYFLAKKGASVTLIEKSNIACAASGKAGGFLALDWCDGGPMEHLARTSFNLHRTLSQELNGPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REC0</accession>
    <name>A0A392REC0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Histone-lysine N-methyltransferase ATX2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010213084">
        <property type="protein sequence ID" value="MCI34374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034732">
        <property type="entry name" value="EPHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050701">
        <property type="entry name" value="Histone_Mod_Regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13793:SF140">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE ATX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13793">
        <property type="entry name" value="PHD FINGER PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13832">
        <property type="entry name" value="zf-HC5HC2H_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51805">
        <property type="entry name" value="EPHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PHD-type" evidence="4">
        <location>
            <begin position="30"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI34374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8921" checksum="C2421532D05FCEAB" modified="2018-12-05" version="1" fragment="single">TQVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIM9</accession>
    <name>A0A392RIM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010230419">
        <property type="protein sequence ID" value="MCI36099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14734" checksum="56A262430E37D07F" modified="2018-12-05" version="1" fragment="single">RADIQHLAKEVSSIKEEQSKAIELCNRKVDITEKPTKDKRSKTIKEGDDSTKSKVGDTIEEAPEEGTESATGKEPTAHNYPQPAPTPPPLCTTGKPQTIVAPYPLKYGKKEALKEQNKKFEGYLTQMEINVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIT0</accession>
    <name>A0A392RIT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010230912">
        <property type="protein sequence ID" value="MCI36149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7172" checksum="4D2B3470F278599B" modified="2018-12-05" version="1">MINTADLDPREEFHDIRVSPIEELQQVQIGKEAHKTTNLGTALQPTEKARIVKIMKENVDLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RLI8</accession>
    <name>A0A392RLI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein PHYLLO chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010240370">
        <property type="protein sequence ID" value="MCI37062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RLI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="entry name" value="Enolase-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42916">
        <property type="entry name" value="2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42916:SF1">
        <property type="entry name" value="PROTEIN PHYLLO, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11645" checksum="32B6409BC2387C7F" modified="2018-12-05" version="1" fragment="single">MAVVSSAFESSLSLAAYTQFSSYLEMQRLSTFKLFDVKAAPSVAHGLGTYRWLKEDITPNPLLIGHNPHSGLVEASVENASRLLRNFQIDQDVICNTIAEEKVCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSH8</accession>
    <name>A0A392RSH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">40S ribosomal protein S10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010269277">
        <property type="protein sequence ID" value="MCI39601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037447">
        <property type="entry name" value="Ribosomal_eS10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12146">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12146:SF27">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN ES10X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7485" checksum="CC00491F20B29A33" modified="2018-12-05" version="1" fragment="single">TYLNLPSEIVPATLKKQAKPPGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTU4</accession>
    <name>A0A392RTU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010274862">
        <property type="protein sequence ID" value="MCI40023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11822" checksum="347413D86C3AD312" modified="2018-12-05" version="1" fragment="single">MFMMFASLKLEGGVKMEELLIVCEFSDVFLEDVSDVPPKREVEFTIDLVPGTSPISMVPYRMSALELNDLKKQLEELLEKKFVRPSVSPWGAPVLLVKKKDESM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1A4</accession>
    <name>A0A392S1A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010304528">
        <property type="protein sequence ID" value="MCI42439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5922" checksum="98FEF2EA59ABAB88" modified="2018-12-05" version="1" fragment="single">MSTTNTEDLSMFEAISILIEVITHHITMIKVNATATMLQDFLGRNTTSSLEHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1U0</accession>
    <name>A0A392S1U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010302633">
        <property type="protein sequence ID" value="MCI42284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4582" checksum="B30927C21E6F6E68" modified="2018-12-05" version="1" fragment="single">MDINVGWPDSGNLITGGPTDCGGDSDTILELGVEPNPTLQNRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S407</accession>
    <name>A0A392S407_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010313608">
        <property type="protein sequence ID" value="MCI43162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S407"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6690" checksum="31A2A01745961A89" modified="2018-12-05" version="1" fragment="single">MKRVAVRIAKIVTGRDVVVSLIRWIPPKASFVKLNTDGVYKKNQIAGFGGVIHGNQGEWLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SCL7</accession>
    <name>A0A392SCL7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010360658">
        <property type="protein sequence ID" value="MCI46661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SCL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF434">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10715" checksum="ABF588CCD415826F" modified="2018-12-05" version="1" fragment="single">MLQTYETRSMESIKLELKEILEQYAEVFQDKITLPPERPQVHQIKLLPDHGPVSVRPYKYPHHQKEEIERQVHELLQAGVIRPSASAFSSPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SD19</accession>
    <name>A0A392SD19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010356151">
        <property type="protein sequence ID" value="MCI46342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SD19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4230" checksum="FC65D209FAA8078D" modified="2018-12-05" version="1" fragment="single">MTSRSALHYLLKLWQGFRGPEAVKPLKVFRGSEALEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKN2</accession>
    <name>A0A392SKN2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010401071">
        <property type="protein sequence ID" value="MCI49431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="63" mass="7268" checksum="6D2DE8639591A7C0" modified="2018-12-05" version="1" fragment="single">HRVTLTPVSHGRKMKLLDSEVSDEEWFRERLAVTGLADLAKTGYQHLDSCLISAFAERWHEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKS7</accession>
    <name>A0A392SKS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010388204">
        <property type="protein sequence ID" value="MCI48565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11193" checksum="73D2F32F040369D5" modified="2018-12-05" version="1" fragment="single">MIEEFRDLSLVCERTTRSVKMGMLRLTNDFLEEVVEKQKTDERLLKLKTFIEQGKKLDIEIDVIGVMRCQGRVCVPDVPELKKMILEEGHRSNLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ02</accession>
    <name>A0A392SQ02_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010414050">
        <property type="protein sequence ID" value="MCI50284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="48" mass="5486" checksum="245E992594A56C82" modified="2018-12-05" version="1">MPPRRAPAVPVTEDDRVERMANSMNMMAAAITTQTNAKTQRDLEKRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STP3</accession>
    <name>A0A392STP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010434084">
        <property type="protein sequence ID" value="MCI51584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2964" checksum="3F3AF99CB9332B30" modified="2018-12-05" version="1" fragment="single">MYDIDKRFPPPLAMTNLRRGTSGAQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVJ0</accession>
    <name>A0A392SVJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010447683">
        <property type="protein sequence ID" value="MCI52462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6990" checksum="691DF0A64BF99220" modified="2018-12-05" version="1" fragment="single">SRGAMASSNAWFGSFESCWLLRAAPMGAALRVRLCLEGTYCLCLLRAAPGSLRHAQGALVRVDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZR3</accession>
    <name>A0A392SZR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010462765">
        <property type="protein sequence ID" value="MCI53416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="47"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11068" checksum="E001309A9C97D77F" modified="2018-12-05" version="1" fragment="single">VAYKLKLPAGSKVHPVFHVSLLKKAVGEYHEDDELPELIGEEQAELYEPEAVLATRKIQYQGEELKQVLIHWKGKVVEEATWEDCVMMKSQFPQFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZV7</accession>
    <name>A0A392SZV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010473467">
        <property type="protein sequence ID" value="MCI54052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4251" checksum="76A775748AEB2CF1" modified="2018-12-05" version="1" fragment="single">VVVVAGQGLVNAIPSAPARQSTAVGPRFSGTGGGCRRLSGGRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2G4</accession>
    <name>A0A392T2G4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010477769">
        <property type="protein sequence ID" value="MCI54340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2G4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5142" checksum="F7D8CB663D050210" modified="2018-12-05" version="1" fragment="single">MNLIEAAGLLKTVKGLGSCYERLVKEFLVNIGQDCNDPESPEYRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6L8</accession>
    <name>A0A392T6L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010512192">
        <property type="protein sequence ID" value="MCI56432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5145" checksum="C13ED8FE2415BC3E" modified="2018-12-05" version="1" fragment="single">NNIGFGQASSTVHTGVERSSYRHRARLNVEHNSHRRRAQPNCMLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAK1</accession>
    <name>A0A392TAK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010540912">
        <property type="protein sequence ID" value="MCI58129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="8389" checksum="B257E75D9C384073" modified="2018-12-05" version="1" fragment="single">MANNPQQTENNGNASWPSFGLPANYTPPEADNSSQPQPIPVTIPITNGGIGSQGVLTGPDGSASHATEDVQLGCPMSNQATAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TED1</accession>
    <name>A0A392TED1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010548730">
        <property type="protein sequence ID" value="MCI58580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TED1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6133" checksum="8DBB70F6477B8FD8" modified="2018-12-05" version="1" fragment="single">MLQQARPKTPVGRPGLFPTLAPSDLQLRWSLSEQQRNAAKFGGQWPRVSKPTCEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TET2</accession>
    <name>A0A392TET2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010557435">
        <property type="protein sequence ID" value="MCI59114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TET2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6038" checksum="91D5B011C674CE9A" modified="2018-12-05" version="1" fragment="single">MYAHLFQTLQLDETHLTPYVGSDLQGFDGATTKPWGYVDLIVTFGCEETAKSIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGG2</accession>
    <name>A0A392TGG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010577430">
        <property type="protein sequence ID" value="MCI60213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3196" checksum="7668055EE71A7A76" modified="2018-12-05" version="1" fragment="single">MSLTMIDMQGHALELLDESQEYSRAARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ99</accession>
    <name>A0A392TJ99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010592653">
        <property type="protein sequence ID" value="MCI61042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6586" checksum="CF150F73A30C16B6" modified="2018-12-05" version="1" fragment="single">EFATWWSLYYEAHSMDEVTLLHKINAGFDALQIKAPRGKATPVVSTTSTASKPKGSSTSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPF8</accession>
    <name>A0A392TPF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010625373">
        <property type="protein sequence ID" value="MCI62788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6922" checksum="2790704EB2FA4046" modified="2018-12-05" version="1" fragment="single">MLVQVMAQRALADAMELMAKAMAQEAVSRTADRVAQESRRGGEDELRLERFMNNKPPIFKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTQ6</accession>
    <name>A0A392TTQ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010652935">
        <property type="protein sequence ID" value="MCI64298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9116" checksum="3EF742E3D31787E3" modified="2018-12-05" version="1" fragment="single">RQQPQPEPQGDPEPVAADPEPKPIDVAEPDPAVAAEEDDGEQLGEADFQEPNDIVEEGVAPKKGDKLEGPSWTECIFPPADPAEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW97</accession>
    <name>A0A392TW97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010672019">
        <property type="protein sequence ID" value="MCI65229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2443" checksum="9F9DC21B08D52436" modified="2018-12-05" version="1" fragment="single">MDRVGKIVAVAEIAVVRKVFEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TX88</accession>
    <name>A0A392TX88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Indole-3-acetate O-methyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010665370">
        <property type="protein sequence ID" value="MCI64890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TX88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005299">
        <property type="entry name" value="MeTrfase_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03492">
        <property type="entry name" value="Methyltransf_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9250" checksum="A03DF394086CB25A" modified="2018-12-05" version="1" fragment="single">INKLEVFKGGSPLVLNKPDDANEVGRALANSCRTVCGVLVDAHLGDKLSEELFLQVERRAANRAKELLEKLQFFHIVASLSFAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZF8</accession>
    <name>A0A392TZF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010678951">
        <property type="protein sequence ID" value="MCI65610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7150" checksum="AD4961E82CB0F286" modified="2018-12-05" version="1" fragment="single">MPSSTSFVSDATLASGPPHPLSIDSLVESMKALLKEDLDDLFLIPWMVDDFHEITRDLEKFGDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0A5</accession>
    <name>A0A392U0A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010701894">
        <property type="protein sequence ID" value="MCI66769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4936" checksum="556A730CC56CCC98" modified="2018-12-05" version="1" fragment="single">MYIRFFTLKVGFRSVMSKVLNSDRGRGRGRVKVFTISAVTAVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDN1</accession>
    <name>A0A392UDN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010777742">
        <property type="protein sequence ID" value="MCI70526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="19"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6332" checksum="DD3EA043FA252D34" modified="2018-12-05" version="1" fragment="single">PAGGNGGGNGPAAPGGNGPAAPNGNGPAAPNAPWNDANLDVLADRLVDRLIPRMMAVIVPLVVQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFW6</accession>
    <name>A0A392UFW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010793717">
        <property type="protein sequence ID" value="MCI71306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8226" checksum="BAF408300E2D7F18" modified="2018-12-05" version="1" fragment="single">MTKSKFGVIKKPSIMKMKRKKRLQLDAVLQWIHNRPIIMVPDRGSEPEEDTGKSNYGNPCCQRECGYITED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJ41</accession>
    <name>A0A392UJ41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010822618">
        <property type="protein sequence ID" value="MCI72654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJ41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="6238" checksum="5ACA8FF822325684" modified="2018-12-05" version="1" fragment="single">MEWVVWWWGKEGWSWWKKKGRRWWWRGVDGCGERWDEVGGKRREGGGGGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT62</accession>
    <name>A0A392UT62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010891396">
        <property type="protein sequence ID" value="MCI75804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3401" checksum="CA8025ED53EDBF54" modified="2018-12-05" version="1" fragment="single">MSRADMLPGQCSLYQGQAATATYQKTVPARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY37</accession>
    <name>A0A392UY37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011006328">
        <property type="protein sequence ID" value="MCI80918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4275" checksum="5463F764602FE57B" modified="2018-12-05" version="1" fragment="single">VSDKEKVTKKQRTQKKKAPKVIRKMVTQEEDDEETD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY85</accession>
    <name>A0A392UY85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010984756">
        <property type="protein sequence ID" value="MCI79949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="11" mass="1012" checksum="256682EBA1ADD878" modified="2018-12-05" version="1" fragment="single">VHLGGATSGTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V002</accession>
    <name>A0A392V002_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010992382">
        <property type="protein sequence ID" value="MCI80295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V002"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6315" checksum="78C76F138D2F1F41" modified="2018-12-05" version="1">MLFGKLLAAATESDRNLQKPESCWLQREKATKTIRNPKVPGFSERKRAASQLARW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0N7</accession>
    <name>A0A392V0N7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">XH/XS domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011025195">
        <property type="protein sequence ID" value="MCI81687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0N7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080188">
        <property type="term" value="P:gene silencing by siRNA-directed DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045177">
        <property type="entry name" value="FDM1-5/IDN2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005379">
        <property type="entry name" value="FDM1-5/IDN2_XH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21596">
        <property type="entry name" value="RIBONUCLEASE P SUBUNIT P38"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21596:SF77">
        <property type="entry name" value="XH_XS DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03469">
        <property type="entry name" value="XH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Factor of DNA methylation 1-5/IDN2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5931" checksum="F423BAB8C654BB8D" modified="2018-12-05" version="1" fragment="single">MGELDTGPFHEAMKKIYNEEEAEDKATELCSLWEEYLKDPDWHPFKVVMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V1Q5</accession>
    <name>A0A392V1Q5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011005778">
        <property type="protein sequence ID" value="MCI80895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V1Q5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4833" checksum="CFFEEF7C9263F923" modified="2018-12-05" version="1" fragment="single">RFSEQLATGNRRFLAAARESVGHFASSLVGSLGDQALFSRVPRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V281</accession>
    <name>A0A392V281_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011010020">
        <property type="protein sequence ID" value="MCI81065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V281"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5257" checksum="80AA81730EB3056D" modified="2018-12-05" version="1" fragment="single">MAARHNNLCLVRAALKVPNQPLGPSLGRRRHVGDLEARADTSGGVTPVSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5V9</accession>
    <name>A0A392V5V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011040774">
        <property type="protein sequence ID" value="MCI82331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7674" checksum="F89800675641F797" modified="2018-12-05" version="1" fragment="single">MELKQGNISVAEYSDKFEVLCVFSPHYNTVEAEEDKCVKFESGLRPDIKQLIGFSEIRDFPTLMTKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V925</accession>
    <name>A0A392V925_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011066795">
        <property type="protein sequence ID" value="MCI83431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V925"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="36" mass="4038" checksum="1D7E24E8791CE2AD" modified="2018-12-05" version="1" fragment="single">MGTALQPTEKAHILKILKENVDLFAWKPSDMPGIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VA96</accession>
    <name>A0A392VA96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011111129">
        <property type="protein sequence ID" value="MCI85258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VA96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3830" checksum="AD20E5176473FEB0" modified="2018-12-05" version="1" fragment="single">MQLSVNFAPEAKGNEIEAEPHPLVLVLQEKLEAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBQ2</accession>
    <name>A0A392VBQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011088996">
        <property type="protein sequence ID" value="MCI84351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="17" mass="1815" checksum="33E8497BFFB7949B" modified="2018-12-05" version="1" fragment="single">MVLCAVVVESSIHLSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VD05</accession>
    <name>A0A392VD05_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011113329">
        <property type="protein sequence ID" value="MCI85352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VD05"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3868" checksum="C7D8E13CC6F921AC" modified="2018-12-05" version="1" fragment="single">DVDGEFTPIKRVLELDRGWCHGCSAQCDGRTTTGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJG4</accession>
    <name>A0A392VJG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011195893">
        <property type="protein sequence ID" value="MCI88548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7822" checksum="2AB45719AF0B0FA5" modified="2018-12-05" version="1" fragment="single">SLSSDEEGDGVPVLTERQREKYPQFTQDSPADRAQPPALITRKDITNLIIALRSTNETLQQQGLRITALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNU1</accession>
    <name>A0A392VNU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011191806">
        <property type="protein sequence ID" value="MCI88395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6574" checksum="0071F2C0E4E3DD13" modified="2018-12-05" version="1" fragment="single">MTRPPTAPPEDHVDDLTQQLAFVTSRLDEISLRMGERQSSVSSATSVPAPEPPHRHRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR20</accession>
    <name>A0A392VR20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011255444">
        <property type="protein sequence ID" value="MCI90834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3498" checksum="BE0FC816ECA45FF4" modified="2018-12-05" version="1" fragment="single">MMESCKDVSGRKKQRIYYGTATAKTTDDTIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSJ4</accession>
    <name>A0A392VSJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011269989">
        <property type="protein sequence ID" value="MCI91368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3630" checksum="0ACC049542F29D06" modified="2018-12-05" version="1" fragment="single">MADFADELLKIASEQKGPKRGKKVKSRASVVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTD1</accession>
    <name>A0A392VTD1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011265109">
        <property type="protein sequence ID" value="MCI91187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5227" checksum="D48091A6CEA55F36" modified="2018-12-05" version="1" fragment="single">EKCQEIEDMRSERMNSQGGFNTGGPSRPSDQNQNRGRQGSKPYDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVF5</accession>
    <name>A0A392VVF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011293802">
        <property type="protein sequence ID" value="MCI92196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2706" checksum="AC0F9F3975EEBE6E" modified="2018-12-05" version="1" fragment="single">MSIWRPEDFYVLEDISAEFSALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVQ5</accession>
    <name>A0A392VVQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011275815">
        <property type="protein sequence ID" value="MCI91573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3638" checksum="D6F554F9025F8301" modified="2018-12-05" version="1" fragment="single">MRRWARIMPGASLLQPETFRKLIRLALWAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVV4</accession>
    <name>A0A392VVV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011276811">
        <property type="protein sequence ID" value="MCI91609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="8"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6726" checksum="CA239649BFD21CB0" modified="2018-12-05" version="1" fragment="single">MMEAAYEEFTWENFKRKFLAIYFPETARERYGEEFLKLRQGGTSVEAYAKKFESLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1C1</accession>
    <name>A0A392W1C1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011356734">
        <property type="protein sequence ID" value="MCI94464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1C1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6243" checksum="9B5A783BAEDA2000" modified="2018-12-05" version="1" fragment="single">FKERYYGVRPITTAGWKSIVYRGPRKDEGGNVVMGPQAGTKDTSSSNPRSSPIRGQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6U7</accession>
    <name>A0A392W6U7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011404401">
        <property type="protein sequence ID" value="MCI96046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6U7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6954" checksum="0A436C9BF4D8BF64" modified="2018-12-05" version="1" fragment="single">HKPPTFTGGYNPDGAVKWLDEVEIIFEAMRCTEEDKTSLGSYMLREEANHWWKNARQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC09</accession>
    <name>A0A392WC09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011440362">
        <property type="protein sequence ID" value="MCI97329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3549" checksum="D8D5F2A8FC4BC7FC" modified="2018-12-05" version="1" fragment="single">MTMPPRVAPVEPSSDPSSPYYVHSSDGPSFVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WD79</accession>
    <name>A0A392WD79_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011423168">
        <property type="protein sequence ID" value="MCI96755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WD79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7081" checksum="945CB3F21A06CC96" modified="2018-12-05" version="1" fragment="single">VEEVKNAEVNMPESKDPEILAVDPPNASKDKTSSSTDGINWEEMMSESNVPTRSGGSSIPAVSSTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6I3</accession>
    <name>A0A392N6I3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027687">
        <property type="protein sequence ID" value="MCH94598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6I3"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="NPH3" evidence="4">
        <location>
            <begin position="1"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="204"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="27807" checksum="20DAA25AB95F03FD" modified="2018-12-05" version="1">MPREKSAVSVSFLSIWLKAAIYLETTVACRFDLERRIAMQLGQAVLDDLLIPSFSSDTSFDVDTVQRIMMNYLESDMENHSVYNADDEYYSSPQRDVFRVGKLLESYLAEIATDRNLSVEKFISLAELMPQKSRTTEDGMYRAIDIYLKAHPFLSDTDRKKVCSMMDFQKLSREARAHAAQNNRLPAQHVAQLMYYEQQRLRDNMDGTGSVGSESPSTPDKRNVYSSELYPASNELNMVLVVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHT8</accession>
    <name>A0A392NHT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040305">
        <property type="protein sequence ID" value="MCH99437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6329" checksum="A98F37CFE74C0984" modified="2018-12-05" version="1" fragment="single">FKDKIANLSSERGERPQRKRSMCGGCKLTKTSMMEDTEIVCGVNGSHSAGASDDGYCNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTF9</accession>
    <name>A0A392NTF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051246">
        <property type="protein sequence ID" value="MCI03121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000062">
        <property type="term" value="F:fatty-acyl-CoA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006869">
        <property type="term" value="P:lipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46093:SF3">
        <property type="entry name" value="ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46093">
        <property type="entry name" value="ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0880">Kelch repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI03121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13626" checksum="294E32D203826B97" modified="2018-12-05" version="1" fragment="single">ASETVVLNMSTLAWSVVTSVQGRVSVASEGLSLVVSSFDGEDVLVSFGGYNGRYNNEVYVLKPSHKSTLQSKIIENSIPDSGSAVQNATNATRDLESEFGAGHEEKIWEISVDNTYPTKRIISSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2U1</accession>
    <name>A0A392P2U1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057619">
        <property type="protein sequence ID" value="MCI05125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2U1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF13">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="23"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13382" checksum="98569C87909EAB91" modified="2018-12-05" version="1">MDVHIPERFRAVKVVLIGWKLPPDGWVKLNTDGSCRDDGSIGCGGVIKGSAGEWLGGFSKFIGNINAYVAELWGVLEGLKIARRLNFRALELHVDSVVVVQAISGNGHGSHRGSAAHVQKIRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4L8</accession>
    <name>A0A392P4L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphoenolpyruvate carboxylase</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063856">
        <property type="protein sequence ID" value="MCI07011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008964">
        <property type="term" value="F:phosphoenolpyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015977">
        <property type="term" value="P:carbon fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048366">
        <property type="term" value="P:leaf development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021135">
        <property type="entry name" value="PEP_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018129">
        <property type="entry name" value="PEP_COase_Lys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30523">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30523:SF44">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00311">
        <property type="entry name" value="PEPcase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00781">
        <property type="entry name" value="PEPCASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14733" checksum="2919C88018060C51" modified="2018-12-05" version="1" fragment="single">VQDCYELSAEYEGELKPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRVKLLKKGDFADENSAITESDIEETFKKLVTELKKTPLEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P5I2</accession>
    <name>A0A392P5I2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010064967">
        <property type="protein sequence ID" value="MCI07321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P5I2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052232">
        <property type="entry name" value="RLK_Ser/Thr-Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984">
        <property type="entry name" value="OS01G0323000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984:SF4">
        <property type="entry name" value="OS01G0631700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Serine-threonine/tyrosine-protein kinase catalytic" evidence="13">
        <location>
            <begin position="13"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF07714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI07321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10161" checksum="603C55355E980198" modified="2018-12-05" version="1" fragment="single">FFEQCPLFVYRGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6P9</accession>
    <name>A0A392P6P9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein ARABIDILLO 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065328">
        <property type="protein sequence ID" value="MCI07424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46976">
        <property type="entry name" value="PROTEIN ARABIDILLO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46976:SF1">
        <property type="entry name" value="PROTEIN ARABIDILLO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00185">
        <property type="entry name" value="ARM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="68"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="154"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="214" mass="22939" checksum="08472E3D1C8395FD" modified="2018-12-05" version="1" fragment="single">QQRGLDNFWVEQGASLLLSLTQSSQEDVQEWAARGLTNFLIIDEENGGIDCGRVEAVMRDGHVGQEAGALEALIQLTHSPHEGVRKEAARALWKILLCDDSYHEAIAAAGGVQALVALARSCSXXXXXXXXXXXXXXXXXXXXXXXXXXVGREGGVAPLIALARSEAEKVRERAVDALYNLAFNPGNALRIMEEGGVAALGDLFSSSASKMTLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P939</accession>
    <name>A0A392P939_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger with UFM1-specific peptidase domain protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067241">
        <property type="protein sequence ID" value="MCI07950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P939"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019783">
        <property type="term" value="F:ubiquitin-like protein peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012462">
        <property type="entry name" value="UFSP1/2_DUB_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48153:SF4">
        <property type="entry name" value="UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MUG105"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48153">
        <property type="entry name" value="UFM1-SPECIFIC PROTEASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07910">
        <property type="entry name" value="Peptidase_C78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UFSP1/2/DUB catalytic" evidence="2">
        <location>
            <begin position="80"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22751" checksum="F84567F9015D4A46" modified="2018-12-05" version="1" fragment="single">MQVERAVSDLHFDTTFGDFNSWCGGGSSGIGRDNGVWNMEEKISCLVDLQIKGEFHNVNGGLMNLLRNCLESEGQNSRSILSGYVDHFQSIRFEDGGFGCGWRNIQMLSSHLLAQKREAKDVLFGGSGFVPDIPSLQRWLEIAWERGFDEPGSNQFNHTIYGSKKWIGATDCAALLRSFGLRARIMDFGPKESESLYLSVPGSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJV6</accession>
    <name>A0A392PJV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposon Tf2-1 polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081465">
        <property type="protein sequence ID" value="MCI11779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="255" mass="29400" checksum="73C999CFEB6841D1" modified="2018-12-05" version="1" fragment="single">LTKYGHFLPLKTDYSSRTVAEAFMNNIVKLHGIPKSIVSDRDKVFTSSFWQHLFKLQGTSLAMSSAYHPQSDGQSESLNKCLEMYLRCFTFENPKCWFKTLPWAEFWYNTAYHMNLGMTPFKALYGREAPTIVRALASETDPVEIREKLADRDELLSRLKQNLLRAQQVMKHQADKKRKDLTLAIGDEVLVKLQPYRQHSAALRKNQKLSMRYFGPFKIEARIGSVAYKLNLPNTAKIHPVFHISQLKPFKGNSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKZ1</accession>
    <name>A0A392PKZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Leucine-rich repeat containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080645">
        <property type="protein sequence ID" value="MCI11565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF1060">
        <property type="entry name" value="NBS-LRR DISEASE RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="2"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="197"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI11565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="29904" checksum="A13D484A0B5B0B5F" modified="2018-12-05" version="1" fragment="single">EILKAMHGMEVDAQMHSFDQLRNLLRERLWGKKFLLVLDDVWNEDYREWLELKKLLLGMRDDGDDKLGSKIVTTTRSDRVGSIMGNAYKHNLKYLPEEECIRLFVKYAFLAGEEKRYPRLVEIGKDIARKCKGLPLAVVSLGSLLYTRLDESEWKKVRDSQIWKVNPQDDDGILAALKLSYNHLSSGLKQCFSYCSIFPKGYEYTNLELISFWMAHGLLQTRNEDEEPEDLGEFYIQELVSRSFFECASEEQLVIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL15</accession>
    <name>A0A392PL15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cell division cycle 5-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084309">
        <property type="protein sequence ID" value="MCI12472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000974">
        <property type="term" value="C:Prp19 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047242">
        <property type="entry name" value="CDC5L/Cef1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45885">
        <property type="entry name" value="CELL DIVISION CYCLE 5-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45885:SF1">
        <property type="entry name" value="CELL DIVISION CYCLE 5-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="17"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="160"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="200"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI12472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="251" mass="27870" checksum="42EB1828883588F6" modified="2018-12-05" version="1" fragment="single">RRLASLQKKRELKAAGIDVRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRTVEQPSFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLVGSEELTEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL66</accession>
    <name>A0A392PL66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Succinate-semialdehyde dehydrogenase mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085753">
        <property type="protein sequence ID" value="MCI12831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004777">
        <property type="term" value="F:succinate-semialdehyde dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009450">
        <property type="term" value="P:gamma-aminobutyric acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050740">
        <property type="entry name" value="Aldehyde_DH_Superfamily"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43353">
        <property type="entry name" value="SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43353:SF5">
        <property type="entry name" value="SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="ALDH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde dehydrogenase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="4928" checksum="90CF8BF987CA91EA" modified="2018-12-05" version="1" fragment="single">GVVNVVMGNAPDIGDALIASPQVRKITFTGSTAVGKKLMAGSAETVKKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PME2</accession>
    <name>A0A392PME2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085038">
        <property type="protein sequence ID" value="MCI12649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PME2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="53"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7086" checksum="C06B433B20B8A03E" modified="2018-12-05" version="1">MGLVLTCLRLRKEVRAEARAPPDVVDNVEMNNVTPSTSSSDDDDDDVEAHKVPSSSGPSPSDSDSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQB1</accession>
    <name>A0A392PQB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089170">
        <property type="protein sequence ID" value="MCI13669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="12050" checksum="2AA5447A87D343DE" modified="2018-12-05" version="1" fragment="single">EIVPLRVISLDHPTNVHGIRVISSSETVQKQQQQQQIANIHIVTPVLQTNVSIPIPPPQSMNVDPMKAETKADVQAGISVPPGFAPLAAGIITTGSITSSIIPEVSTQNMAEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQN8</accession>
    <name>A0A392PQN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087412">
        <property type="protein sequence ID" value="MCI13235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="234" mass="26732" checksum="AA558285C8DCA7C1" modified="2018-12-05" version="1" fragment="single">MPFFDLETAVFRHLRVCPSQLHPNSLGFLRAFELLATHLNVAPTVPLFFHTFGLQRSCPEGEKAKGKAPKGHKQEPTKHGWVSLKQRKSLFMIFEESVRGFKDKFYGVRPCTAEAWKTIITRGPRKDVSGNVVMSPDGVPFEDDFALFHFYWNEEHYEIPPSEFTYKRTELTVEEAEDYDRLVTFVGAFPANLLEDSEGNPILDDNGRQKTSAKLVDTKRLLGCKTAEEVASFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSH3</accession>
    <name>A0A392PSH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094823">
        <property type="protein sequence ID" value="MCI15053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="20671" checksum="82F21F9DDEDDAEC0" modified="2018-12-05" version="1" fragment="single">IVITGSKSKKEIPVIDIRLRSRTTKSTPTVVVTPAATKKVKDSSLKPVKYGPSRTWSKCASPSEKKKKPLKRKSAPSSDSDYDAEKDAPSIKPPAKKVMSAKKSSQEVEEVPCDNVSFHRVVYAQRWDYVCKRIFALERELGKDILECEEIVSLIKEAGLMKTVWGISNCYEKLVREFLVNIPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PU28</accession>
    <name>A0A392PU28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096010">
        <property type="protein sequence ID" value="MCI15334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PU28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="22317" checksum="02B84887216A1282" modified="2018-12-05" version="1" fragment="single">IFKGKVCTWVNSLRLVGLELETSRVSASLVDSSESFENMHPRRAPAVPVTEDDRVERMANSMNTMAAAITAQTNAKTQRDLEKREREILAARTRVLTSFNGQNPPKFRGDGGPAAADLWLQAIEKIFGAIHCPEEEMVTLATYQLLGDADYWWGNTSLLMEAAFEEFTWENFKRKFLAKYFPETARERYGEEFLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYD0</accession>
    <name>A0A392PYD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative inactive purple acid phosphatase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104064">
        <property type="protein sequence ID" value="MCI17143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45778:SF16">
        <property type="entry name" value="INACTIVE PURPLE ACID PHOSPHATASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45778">
        <property type="entry name" value="PURPLE ACID PHOSPHATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6563" checksum="043F32F98443181B" modified="2018-12-05" version="1" fragment="single">DQFTAQVEPIASAVPYMIASGNHERDWPGSGSFYGNMDSGGECGVLAETMFYVPASNRAKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0V7</accession>
    <name>A0A392Q0V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MAU2 chromatid cohesion factor-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SCC4/mau-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106238">
        <property type="protein sequence ID" value="MCI17607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019440">
        <property type="entry name" value="MAU2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21394">
        <property type="entry name" value="MAU2 CHROMATID COHESION FACTOR HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4" id="KW-0498">Mitosis</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008585"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI17607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="18102" checksum="AE91F0CB5B751C5C" modified="2018-12-05" version="1" fragment="single">RRQCPGLLFYNELLHIFYRTRLCDYKNAAPHVDNLDAAVKADRKQTQHMQELVKELSALDQSLSRNDLHYRERAALSEKQAMIQEQLRNMNGFSSIGQESLEPVYFGNSRRTLGDKLQLAPPPIDGEWLPKSAVYALVDLIVVVFGRPKGLFKECGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q104</accession>
    <name>A0A392Q104_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105749">
        <property type="protein sequence ID" value="MCI17509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q104"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050907">
        <property type="entry name" value="SRSF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23147">
        <property type="entry name" value="SERINE/ARGININE RICH SPLICING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="3" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="RRM" evidence="5">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI17509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="224" mass="25997" checksum="B022F6646D4575B7" modified="2018-12-05" version="1" fragment="single">FTNFPEEASSEELWVVFRKYGRVAEVYIPKKLDKWGRRFGFVKFKEVNEVEVLGERLKDVWLGTFKLRVNRARFGRSEVKDEIPRKSEKKRQAINVEVTTPGKSFRTALLGIREEGSSSRETLCIKASVNEAFLKELKGSMVVTLARERDVRRIRTTLFMEGFQSIRVTHMGGNMALLCSSVEGDIAKLVRSKNECLDYYFSEMKPWEPGLFAKHRELWVQVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2U1</accession>
    <name>A0A392Q2U1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Brefeldin A-inhibited guanine nucleotide-exchange protein 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105996">
        <property type="protein sequence ID" value="MCI17565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q2U1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015403">
        <property type="entry name" value="Mon2/Sec7/BIG1-like_HDS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663:SF312">
        <property type="entry name" value="BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10663">
        <property type="entry name" value="GUANYL-NUCLEOTIDE EXCHANGE FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09324">
        <property type="entry name" value="Sec7-like_HDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mon2/Sec7/BIG1-like HDS" evidence="1">
        <location>
            <begin position="38"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10582" checksum="F7F03318DDE60883" modified="2018-12-05" version="1" fragment="single">VWARIWSVLANHFISAGSHQDEKIAMYAIDSLRQLGMKYLERAELANFTFQNDILKPFVVLMRNSQSESKRRLIVDCIVQLKLLLFADDKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3Z4</accession>
    <name>A0A392Q3Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein argonaute 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111998">
        <property type="protein sequence ID" value="MCI18828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12889" checksum="5A9A08EF74DD6A78" modified="2018-12-05" version="1">MKFGNGEDFNPRNGRWNFNNKPTKIEKWAVANFSARCDVRGLVRDIIRIGNMKGIMIDPPFDVFEENPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCDIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q588</accession>
    <name>A0A392Q588_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110045">
        <property type="protein sequence ID" value="MCI18415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q588"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="84"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI18415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="22184" checksum="252C9BB45AA82686" modified="2018-12-05" version="1" fragment="single">NSLEAHELVVVDRDSERSNQQALQAQTNKKDGNSKNFKKKGKGKANWSNNGKSKADDKSESSKRRWFIKSHNKKKDFDKSKVQCYNCEKYGHFVDECWFKKDQQNGEEANMTEGNNPNAVLMMATTCDDSVKNEEWYLDSGCSNHMTAHREWLTSFNASRRTRIKLADSRKLAAEGTGNIVVRSKNGGKVIIEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6L2</accession>
    <name>A0A392Q6L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115049">
        <property type="protein sequence ID" value="MCI19489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8784" checksum="73C04FE7BDD566B3" modified="2018-12-05" version="1" fragment="single">APTLPLASDEGSPVLHFQQFLLFLPFLLVVWLSLDRGLRHHIVVVIIVLSVMVGGTEYVVSPVYINASFCPNPTPPPPPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAR3</accession>
    <name>A0A392QAR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc finger CCCH domain-containing protein 41-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124958">
        <property type="protein sequence ID" value="MCI21463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12257">
        <property type="entry name" value="RRM1_RBM26_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000719">
        <property type="entry name" value="Predicted protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045137">
        <property type="entry name" value="RBM26/27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14398">
        <property type="entry name" value="RNA RECOGNITION RRM/RNP DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14398:SF0">
        <property type="entry name" value="ZINC FINGER PROTEIN SWM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="4">
        <location>
            <begin position="63"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="145"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI21463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="18769" checksum="A45EB818D97148A4" modified="2018-12-05" version="1" fragment="single">MNSFHFPDXQSKEGNDELVGSHSASSQGKQTIADDAIPRTFEASLKAQIDMRNIRKPSQKAQRTLFVNGIPHKSNRREALLAHFKKFGEVIDIHIPMNTERAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDCIPSDNTTATNGNGVIVTPRGQPPTSVPSHPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE07</accession>
    <name>A0A392QE07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127825">
        <property type="protein sequence ID" value="MCI21970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5071" checksum="77D3194DD5531792" modified="2018-12-05" version="1" fragment="single">FRSSISLFITSFAFPVPLNSDQSYAGDEDDEFLGNSASRRLSSQNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGF9</accession>
    <name>A0A392QGF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Wall-associated receptor kinase-like 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132591">
        <property type="protein sequence ID" value="MCI22830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="entry name" value="LysM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056563">
        <property type="entry name" value="LysM3_LYK4_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052611">
        <property type="entry name" value="Plant_RLK_LysM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45927">
        <property type="entry name" value="LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45927:SF6">
        <property type="entry name" value="PROTEIN LYK5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23473">
        <property type="entry name" value="LysM3_LYK4_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="LysM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LYK4/5 third LysM" evidence="1">
        <location>
            <begin position="39"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="11665" checksum="E5A07F1052FBB267" modified="2018-12-05" version="1" fragment="single">MMGQNYYAPIYIPVGAELTVPVLCACPTANLTARGVTSLLVHIVNDGDTVKSIGEAYGVDENSMREANELPLLKSANSSVILFATTPLLVPLRGKSCKENPERFYCKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRP4</accession>
    <name>A0A392QRP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-binding/protein serine/threonine kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153697">
        <property type="protein sequence ID" value="MCI26504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051824">
        <property type="entry name" value="LRR_Rcpt-Like_S/T_Kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48006:SF72">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE RFK1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8674" checksum="0141147393149F76" modified="2018-12-05" version="1" fragment="single">MPSDNCVCLLDKALFLERTKNVMSLVDERLGSEINTTETKNLVKVALLCTNPSPSLRPAMSEVVSMLEGRISIPDVIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWZ2</accession>
    <name>A0A392QWZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166326">
        <property type="protein sequence ID" value="MCI28519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017359941" evidence="1">
        <location>
            <begin position="16"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7703" checksum="9C0F95DDAC78DF56" modified="2018-12-05" version="1" fragment="single">MRFFAVFSLDWFGLRFYFWIDSDTITPRLEGWVGVLMQGVTYDKWVWNLNPSERYAIKEIYNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYX8</accession>
    <name>A0A392QYX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010170800">
        <property type="protein sequence ID" value="MCI29179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14666" checksum="6E10DE6FD6F2CA3D" modified="2018-12-05" version="1" fragment="single">PIEPAIETYQEFIQRPRRHLNLFEAWIEFEEEQDLAAQEGGSTVTVTTTSERDSKGDESKDSEADKVVETIETPRSEEEVQKKDKESPQTKETGLERFIETLKELEASPQEEEQQKPKRMQQVVHY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0A4</accession>
    <name>A0A392R0A4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Clustered mitochondria protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010176287">
        <property type="protein sequence ID" value="MCI29998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0A4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025697">
        <property type="entry name" value="CLU_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13236">
        <property type="entry name" value="CLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Clu" evidence="1">
        <location>
            <begin position="2"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4204" checksum="08E90E22AA02ECDE" modified="2018-12-05" version="1" fragment="single">VSEAAKRLHLKEHSVLDGSGNVFKLAAPVECKGIVGGDDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC84</accession>
    <name>A0A392RC84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010211986">
        <property type="protein sequence ID" value="MCI34248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RC84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4549" checksum="A94123FBC2A73A69" modified="2018-12-05" version="1" fragment="single">ASAFTGGVVGGSGNSFLSELPSISEVTFRYSSLSEAKIQNALGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RMF4</accession>
    <name>A0A392RMF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010248675">
        <property type="protein sequence ID" value="MCI37818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RMF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000063">
        <property type="entry name" value="Zinc knuckle domaincontaining protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8586" checksum="2F6A3E5B05F65B41" modified="2018-12-05" version="1" fragment="single">MEQVNFLGHVISKEGIDVDPVKIDTVLSWKQPQTITDVRSFVGLAGYYRRFIEGFAKIVAPMTQLTRKDQPFAWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RMS0</accession>
    <name>A0A392RMS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010250010">
        <property type="protein sequence ID" value="MCI37931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RMS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2977" checksum="65F505D8891686B6" modified="2018-12-05" version="1" fragment="single">MMVQGARLIRCLWAGGAAACNPSTVRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYF3</accession>
    <name>A0A392RYF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010292233">
        <property type="protein sequence ID" value="MCI41429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3523" checksum="BAF07FF04AA21360" modified="2018-12-05" version="1" fragment="single">LLNPNVEFNLEGLDEEKEVRDGRIATPPEGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5E6</accession>
    <name>A0A392S5E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010313094">
        <property type="protein sequence ID" value="MCI43115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11337" checksum="0843D271C8B4D4D0" modified="2018-12-05" version="1" fragment="single">MQLEDGMNETAITHQPVVDPSQGANHEEEMHTSSDDDDRIHLSSRTTQIPRRSTRAKFPSVRLNDHEITTDSAVNEHGDLVHLAFMGDFEPINWKEAVASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5L8</accession>
    <name>A0A392S5L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010313831">
        <property type="protein sequence ID" value="MCI43176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12305" checksum="DE1380182A34CBB1" modified="2018-12-05" version="1" fragment="single">MSSLMAKELELIEEFRDLGLVCERTTRSVKVGMLRLTNPFLEELVERQKTDTRLLKYKALIEQEKELDIKIDENGVMRCRGRVSVLDVAELKIMILEEGHRSNLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5Z8</accession>
    <name>A0A392S5Z8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010322703">
        <property type="protein sequence ID" value="MCI43842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5359" checksum="64A1F0D4B3C5D27C" modified="2018-12-05" version="1" fragment="single">MRIITNEQRLQFLAKARQKKSAPEAAKGGKRKRKAETGRVTVPIPNKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6A2</accession>
    <name>A0A392S6A2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010323732">
        <property type="protein sequence ID" value="MCI43927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6A2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7811" checksum="3C80A8466747E83B" modified="2018-12-05" version="1" fragment="single">MGYHYFDMMVSTFRISPDVEHYSCMVDLLGRRGLLGEAMSLIKKMPIKPDVVVWSALLGACRIYGNLTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S976</accession>
    <name>A0A392S976_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ubiquitin carboxyl-terminal hydrolase 26-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010341199">
        <property type="protein sequence ID" value="MCI45239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S976"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035927">
        <property type="entry name" value="DUSP-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143791">
        <property type="entry name" value="DUSP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6424" checksum="78F4D2646BB950F7" modified="2018-12-05" version="1" fragment="single">MSLFMGKCVKLNLNSSYFLVPTSWISKWRNYINPDVKNSDTPETLNVAINSLLCEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SA13</accession>
    <name>A0A392SA13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010345244">
        <property type="protein sequence ID" value="MCI45519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SA13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="5059" checksum="55110110F8473DA8" modified="2018-12-05" version="1" fragment="single">ANWEDPFRIHEVFEGGAYRLETLQGKILPRTWNVANLRFYYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAF2</accession>
    <name>A0A392SAF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010336003">
        <property type="protein sequence ID" value="MCI44845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8618" checksum="A717BFEE66B24C16" modified="2018-12-05" version="1" fragment="single">FGDGVKGKIKGIGKLASPGSLCLDDVLLVEGLTANLISISQHCEQGLNVHFNNSECTILKGQQVLMKGTKSRDKCYLWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEC1</accession>
    <name>A0A392SEC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010365905">
        <property type="protein sequence ID" value="MCI46999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7093" checksum="7E1D97A16513E193" modified="2018-12-05" version="1" fragment="single">MVKKIEAMRKFIGKGKDIRPFSHLAPLPGIRYRAAIASEDFIYFASSRQKAAYDELFEALND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLM0</accession>
    <name>A0A392SLM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010406829">
        <property type="protein sequence ID" value="MCI49788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8193" checksum="9BC0E901A13435FD" modified="2018-12-05" version="1" fragment="single">MVYETEAVIPVEIGEPSRRTEQPLDEEQNDEALREELDLVEEIRTGASLKEATLKQKIAARHDTKVIKREF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQK2</accession>
    <name>A0A392SQK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010420096">
        <property type="protein sequence ID" value="MCI50677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11049" checksum="8121DCD7FC4CF1A2" modified="2018-12-05" version="1" fragment="single">MQEVTKRAECYIKGEENNAEKRSRDAKEKEVRNGNGRASGPQVHRNWQPNEGQRQGHRNKPYYPPAGQGGRAHLQEMRYPPERQYTPLNRAKVHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVJ4</accession>
    <name>A0A392SVJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010447579">
        <property type="protein sequence ID" value="MCI52457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10420" checksum="776293D2F5414E6D" modified="2018-12-05" version="1" fragment="single">ISDTPWSCSLQGSLQQPCSEGFVDLPGAVRCKARGSDLVAKDFSWLLELFAAMLAAATVSDTCSLLLTMARCSEGCKIQNLHFAPKPVKKSGKCNIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SXK8</accession>
    <name>A0A392SXK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010455504">
        <property type="protein sequence ID" value="MCI52954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SXK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3372" checksum="8F8E90E8DC5D06F0" modified="2018-12-05" version="1" fragment="single">DSEAVKPLKVFRGSEAVKHLRVSDVLKYSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SY90</accession>
    <name>A0A392SY90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010468922">
        <property type="protein sequence ID" value="MCI53793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SY90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8229" checksum="6FC2A63C9444DA70" modified="2018-12-05" version="1" fragment="single">MGLLSGPNAPSGVLRGGDKDAPAADDGLGVIQPTSSQTAPTATSGDAPSLWDPLFNPLEFIERELNMVGDISRFTSASIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYS3</accession>
    <name>A0A392SYS3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010456365">
        <property type="protein sequence ID" value="MCI53010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYS3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4631" checksum="0E1D5F93FF01BF36" modified="2018-12-05" version="1" fragment="single">TNPIVWDIDPAGEFLVDLFTAKELIGEVILAEVFDDGKNGGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0Z6</accession>
    <name>A0A392T0Z6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010473548">
        <property type="protein sequence ID" value="MCI54057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0Z6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6205" checksum="5A53608E1C286E83" modified="2018-12-05" version="1" fragment="single">SARSLEPELHLEGADAPRSVAVAPSFVHGAPALLPAAQPAVGWGHCLLKWNPAKLLCDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1M9</accession>
    <name>A0A392T1M9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010487454">
        <property type="protein sequence ID" value="MCI54919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1M9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8137" checksum="E54BE0D5D7E862FA" modified="2018-12-05" version="1" fragment="single">MDPDQDDTNPPAPGCGRRGRRRALPHRIIRNRYLTGMPKSRNVNGVEVIYDEYDDEDDHEDEEIDQSLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T427</accession>
    <name>A0A392T427_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010489859">
        <property type="protein sequence ID" value="MCI55055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T427"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6325" checksum="5A59620BB8752992" modified="2018-12-05" version="1">MRGMGGTSLTYIVVIPHHVPILDMGGAIHDGIWNRCHDSSGDKPAKLAQGNSDTRRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4A8</accession>
    <name>A0A392T4A8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010492529">
        <property type="protein sequence ID" value="MCI55217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4A8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5484" checksum="39DF803EB2D16398" modified="2018-12-05" version="1" fragment="single">RWASQVSLGEHHVRRFLAPAIKFQFAVQACSLGKEELAGRGRARWASTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T538</accession>
    <name>A0A392T538_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010497575">
        <property type="protein sequence ID" value="MCI55507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T538"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="5889" checksum="4D5E55B0B83F2424" modified="2018-12-05" version="1" fragment="single">CTYVHIFSGSKTKAALSASNKPPTLTIKKEPGATTRKRGSDSKASNAPKKLKAVDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T575</accession>
    <name>A0A392T575_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010509773">
        <property type="protein sequence ID" value="MCI56271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="9" mass="986" checksum="2DF95AA72DD44457" modified="2018-12-05" version="1" fragment="single">MPNNALDIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5B0</accession>
    <name>A0A392T5B0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010496974">
        <property type="protein sequence ID" value="MCI55475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5B0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6930" checksum="A4C9E441E51357C8" modified="2018-12-05" version="1" fragment="single">TANAPSSAPTTTPATATRKSPRNKEPVAATQPELTTRKSPRNKEAVATTQPPPATRKSPVKRKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6V3</accession>
    <name>A0A392T6V3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010517729">
        <property type="protein sequence ID" value="MCI56759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6V3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5190" checksum="F4F4B0BF63224CE7" modified="2018-12-05" version="1" fragment="single">AFRTVGKKWPKVTVLLQEIVVREFVTVVGRIHSPSEFDSLGLCSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6Z5</accession>
    <name>A0A392T6Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010518507">
        <property type="protein sequence ID" value="MCI56799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="11170" checksum="0DD9011EB948E60A" modified="2018-12-05" version="1" fragment="single">GGAMKCVEIGRNTHGESTLLDEESWMERIDGERRKEKDGEMESDERIKDGWRELDGEGRMERVGWRVMERDRWGKTDVERMMERDRRRRIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBZ4</accession>
    <name>A0A392TBZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010549376">
        <property type="protein sequence ID" value="MCI58629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5568" checksum="35F4B1810B0C2167" modified="2018-12-05" version="1" fragment="single">TVELNTEGLSMLKRVENGQITIPPEYAQMVEDEEDEQEGEAQGESNGEDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG76</accession>
    <name>A0A392TG76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575676">
        <property type="protein sequence ID" value="MCI60121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7473" checksum="7EB664A11199093B" modified="2018-12-05" version="1" fragment="single">NDGFPANLNEGEISCRCEPGEDTITELSLTREKYLKGDIESSNPYFNLVFEILPWHIVNVLAAEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKS9</accession>
    <name>A0A392TKS9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010592765">
        <property type="protein sequence ID" value="MCI61047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKS9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5781" checksum="3D709EF3FD010240" modified="2018-12-05" version="1">MTPQDFHVHNNWPGDRPQFGEGAGTVAGDDGDEDDVDNAVADAFEDDDEMQDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN45</accession>
    <name>A0A392TN45_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cell wall/vacuolar inhibitor of fructosidase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010621041">
        <property type="protein sequence ID" value="MCI62563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN45"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4173" checksum="85921C80625A2372" modified="2018-12-05" version="1" fragment="single">MLGNGAKKALSSCGEKYRTILVPVIPQAIEALGKGDPKFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPM8</accession>
    <name>A0A392TPM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631811">
        <property type="protein sequence ID" value="MCI63141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58100">
        <property type="entry name" value="Bacterial hemolysins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9623" checksum="9B34848AB4A19098" modified="2018-12-05" version="1" fragment="single">GFVNEIDEFRSEIDELRSEIEEFRGEIDGFRGQIDEFSVEIDEFPVEIDELRSEIDELRSEIDGFCGEIDGFRDLRNEGRNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUX6</accession>
    <name>A0A392TUX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010645864">
        <property type="protein sequence ID" value="MCI63916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8393" checksum="6CFE9DC6C604F43F" modified="2018-12-05" version="1" fragment="single">MRSKRVNRQGGFSLGDLAAQIIIAKTVEGRGLGLSIVLRMIVDLIVLRTKGLKGIRVEGSILASSVGRKGIMPMNVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TV38</accession>
    <name>A0A392TV38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010653078">
        <property type="protein sequence ID" value="MCI64307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TV38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8119" checksum="218BE4A534157A19" modified="2018-12-05" version="1" fragment="single">FWNLRAAQGVPARCAVHLASSRLLFWQVRAAQGSMARCAVRSKINWVSLWHWRAESVLEEIQALEGWSRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TWH2</accession>
    <name>A0A392TWH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010676986">
        <property type="protein sequence ID" value="MCI65503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TWH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3146" checksum="50E2EC1A04D2F1EF" modified="2018-12-05" version="1" fragment="single">ESLTVVYVEGLFVGFNGCFVPVILGFLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXQ4</accession>
    <name>A0A392TXQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010665305">
        <property type="protein sequence ID" value="MCI64886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3422" checksum="E3F1EE2F40181CD2" modified="2018-12-05" version="1" fragment="single">VAVSRQETENILSHLASPRQYSLSEKYWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZL2</accession>
    <name>A0A392TZL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679906">
        <property type="protein sequence ID" value="MCI65670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6866" checksum="0265D92A05E2970D" modified="2018-12-05" version="1">MSALLSWYLWMGKYLSKNFTSSSCQALTVIGGKVSNQSFALLVKENLKSLNLLADSVTFGGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U1M0</accession>
    <name>A0A392U1M0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694245">
        <property type="protein sequence ID" value="MCI66370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U1M0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5522" checksum="2D5D415A9B3F278C" modified="2018-12-05" version="1" fragment="single">FQDSGGGKAANSPAWKEAARSGSKATTHNKDGSNTNRTVPCKWRTGGATTEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2P5</accession>
    <name>A0A392U2P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010722210">
        <property type="protein sequence ID" value="MCI67711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5432" checksum="2D7B947467D612A9" modified="2018-12-05" version="1">MAPGAVLEVARGHRARWWRGSRQPSPVVVFLPDLSSLPAARRDSATGAMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U517</accession>
    <name>A0A392U517_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010724452">
        <property type="protein sequence ID" value="MCI67824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U517"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3095" checksum="96F1678ABD6C96FA" modified="2018-12-05" version="1">MSVSDGVAVGMILIVLRTLGGMVGIGFLSGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6N8</accession>
    <name>A0A392U6N8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010736885">
        <property type="protein sequence ID" value="MCI68457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6N8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5257" checksum="6C552E0C7DCF72EC" modified="2018-12-05" version="1" fragment="single">LCDYLFLVGDPCTFVCHICGLLPPLDDVALPDAAGREGDEDFVEYPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7F3</accession>
    <name>A0A392U7F3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010755963">
        <property type="protein sequence ID" value="MCI69439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7F3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6527" checksum="5BF859647A9B9D63" modified="2018-12-05" version="1" fragment="single">MLCGIILSQHPDICTAADVPCEREADLSLDYRLFEGPHAVDIAGPSGKKSGDLLSKKQMIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9K9</accession>
    <name>A0A392U9K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010748516">
        <property type="protein sequence ID" value="MCI69066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7232" checksum="C25E0509D9899DDE" modified="2018-12-05" version="1" fragment="single">RFVCSRLHRRIEGGCSAAAVPCSSKPIRVCAVLPSCSGSGVFLLGAAVAHFFKMVWALLRVWLSILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UBX3</accession>
    <name>A0A392UBX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010751616">
        <property type="protein sequence ID" value="MCI69225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UBX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5485" checksum="C7EA5E79EC958733" modified="2018-12-05" version="1" fragment="single">SNAHSSARRELAANAPAKRGLHKQGPPPMQGTHDAEVGGSRSRARSRLGQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFY5</accession>
    <name>A0A392UFY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010799608">
        <property type="protein sequence ID" value="MCI71604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6649" checksum="AA297EB4A13B8E66" modified="2018-12-05" version="1" fragment="single">MVIHYTNGAVIQAGTPPILERLFPSSVPKFNTNIPCPRCGDCDRTRTHGVIKSCLDCFLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGS4</accession>
    <name>A0A392UGS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lycopene beta-cyclase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010812061">
        <property type="protein sequence ID" value="MCI72158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05834">
        <property type="entry name" value="Lycopene_cycl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5745" checksum="913E691830CA647C" modified="2018-12-05" version="1" fragment="single">MLQKCISNGVKFHQAKVIKVIHEESKSLLICNDGVTVQATVVLDATGFSKCLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMZ6</accession>
    <name>A0A392UMZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010873374">
        <property type="protein sequence ID" value="MCI75013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="4944" checksum="E4917D6690626085" modified="2018-12-05" version="1" fragment="single">ASRRVAPSRSSSSRSSSSLSISLFISSSMGISVLNDDAPVSMGITASVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX18</accession>
    <name>A0A392UX18_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon protein putative Ty3-gypsy subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010969452">
        <property type="protein sequence ID" value="MCI79245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="13"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI79245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7439" checksum="0A04BE6660AABEE1" modified="2018-12-05" version="1" fragment="single">MTQLTRKDQPFGWTDKCEAGFQLLKERLTTSPVLVLPQSDEPYEVYCDASHQGLGCVLMQHKKAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6T2</accession>
    <name>A0A392V6T2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011060833">
        <property type="protein sequence ID" value="MCI83172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6T2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4387" checksum="C25BD37554FA72FE" modified="2018-12-05" version="1" fragment="single">MLTNRGIEANLEKCQAIIDMRSPASVKEVQQLTGRITALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6T5</accession>
    <name>A0A392V6T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011079892">
        <property type="protein sequence ID" value="MCI83974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="9"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7145" checksum="F98D2F83B02FAFA4" modified="2018-12-05" version="1" fragment="single">VASEHDPLVLMLQEQLATQKAKQELLKEEVKNLTESQHRVIQTQEDMNSKLEAILAFMSRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8D1</accession>
    <name>A0A392V8D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011061172">
        <property type="protein sequence ID" value="MCI83191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4786" checksum="C314FBC2F04DDE6C" modified="2018-12-05" version="1" fragment="single">VGVVVLATSAAGVEEESRAARWKIVDSSSSNRDLASAKVGQGSCCCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8P9</accession>
    <name>A0A392V8P9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011072039">
        <property type="protein sequence ID" value="MCI83649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8P9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7987" checksum="16E3888CEB6122D8" modified="2018-12-05" version="1" fragment="single">VKESVKEHAELFAVFASLKLESGVKMEELPVVCEFPGVFSGDVSDVPPEREMKFTIDLVPGTGPISMAPYRMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8S0</accession>
    <name>A0A392V8S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011076405">
        <property type="protein sequence ID" value="MCI83833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5427" checksum="6D2A612BE1129FF7" modified="2018-12-05" version="1" fragment="single">TTTQREIYQGVIIDKAIKRDMIQGTMPTSGAALFFNAPDNIEIPTNAHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAM9</accession>
    <name>A0A392VAM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011113392">
        <property type="protein sequence ID" value="MCI85354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6428" checksum="130AA577D44F1D39" modified="2018-12-05" version="1" fragment="single">MSKKSSTTMTRIIQIYSKRTPQPPTKPTTRAKEHPDTNQIRRKTKVMSPENWEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAV8</accession>
    <name>A0A392VAV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011089815">
        <property type="protein sequence ID" value="MCI84389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7832" checksum="0397C3B7C7894A26" modified="2018-12-05" version="1" fragment="single">DAHVSLPTSVMPASASQYTMLEGYPWGIPDHFLSEGFRPMVSEIPMPSVQQNLSSPQVTVTVPAPVVHTVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHY4</accession>
    <name>A0A392VHY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011181149">
        <property type="protein sequence ID" value="MCI88004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5053" checksum="69867F73B046B968" modified="2018-12-05" version="1" fragment="single">QVDSFAGTHLVVDDSAEVPPKAVEAGVHATVVGIVLGLWLPDKDIVASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJ87</accession>
    <name>A0A392VJ87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag polyprotein-related</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011165778">
        <property type="protein sequence ID" value="MCI87429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJ87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6663" checksum="808FFD228E39B9CC" modified="2018-12-05" version="1" fragment="single">MELKQGNLPVSEYSAKFEALCVFSPYYNTVEAEEDKCIKFESGLRPDIKQLIGFSEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPM9</accession>
    <name>A0A392VPM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011218623">
        <property type="protein sequence ID" value="MCI89402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="11" mass="1324" checksum="04DEE12DA5A40440" modified="2018-12-05" version="1" fragment="single">HRVINRSSILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR22</accession>
    <name>A0A392VR22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011212302">
        <property type="protein sequence ID" value="MCI89155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6424" checksum="B6FA5554A68C6818" modified="2018-12-05" version="1" fragment="single">LTSGESPVDKTPAPSIAKRLRGNSSKAIVTGGSVSVKARKKVKNPVRYGHPRPPTEPFPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUC8</accession>
    <name>A0A392VUC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011241307">
        <property type="protein sequence ID" value="MCI90325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7632" checksum="ECE5E9450149D0EA" modified="2018-12-05" version="1" fragment="single">EQRMKEQVVVFEAPPSPEPTKESLQILVIPPPWKPPDAESRVVTPSPLPNSGHPLAAISRRGPPPKPPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUM4</accession>
    <name>A0A392VUM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011290773">
        <property type="protein sequence ID" value="MCI92098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7414" checksum="F5A9E675D9724C71" modified="2018-12-05" version="1" fragment="single">IIKGEPVNVGRLLADDLWSTANCSSPTSYINHASLISKLCERVKVYPEKNEEMVKPSRAINAKWIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVW4</accession>
    <name>A0A392VVW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011262723">
        <property type="protein sequence ID" value="MCI91101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5688" checksum="2783767E3CB5A977" modified="2018-12-05" version="1" fragment="single">MKSNDLLKNELTPLEDKELVQEAIVSGTPSKELKPHWVDKYEALEIPPDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWD4</accession>
    <name>A0A392VWD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011308063">
        <property type="protein sequence ID" value="MCI92708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5957" checksum="8DE9DC4E26F3B558" modified="2018-12-05" version="1" fragment="single">MLFKVNFEKAYDSVYWGYLGAVMGRMGFPTLCRKWITECVSTATAFVLVNGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXY4</accession>
    <name>A0A392VXY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011298516">
        <property type="protein sequence ID" value="MCI92349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7521" checksum="43F3FC342C60C0EC" modified="2018-12-05" version="1" fragment="single">VKYGFDNALDQVKVLNPTVELVTEGLSMLKRVENGQIIVPPEYAQMEEDEEDEQGDGEDQGESHGGDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYK3</accession>
    <name>A0A392VYK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011289240">
        <property type="protein sequence ID" value="MCI92051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3037" checksum="A95AEF084EDCC664" modified="2018-12-05" version="1" fragment="single">MSKKDSYGPPLGETSKPITTSGITKGITAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZ02</accession>
    <name>A0A392VZ02_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011323169">
        <property type="protein sequence ID" value="MCI93217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZ02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317">
        <property type="entry name" value="OS04G0629600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35317:SF27">
        <property type="entry name" value="RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="48" mass="5625" checksum="BE832D6A562747DC" modified="2018-12-05" version="1" fragment="single">MKAGESVNEYFARTLTIANRMRIHGEKMEDVTIIEKILRSMTSKFDYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W197</accession>
    <name>A0A392W197_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011350037">
        <property type="protein sequence ID" value="MCI94206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W197"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6715" checksum="4AA68BA395795CEE" modified="2018-12-05" version="1" fragment="single">MRSKRMNRQGNFSAGGPSRPSNQNQNRGRQGTTPYNRPQNNRGSNHYVNQGTRGNQVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W589</accession>
    <name>A0A392W589_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080620">
        <property type="protein sequence ID" value="MCI11560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA011388535">
        <property type="protein sequence ID" value="MCI95497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W589"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5789" checksum="E091A52E06485D85" modified="2018-12-05" version="1" fragment="single">TQLLAIDVGAATGLVRRTLIGDELTEKEKKVLKRTLTDMATVVPIGVLMLIPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WMR1</accession>
    <name>A0A392WMR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011469169">
        <property type="protein sequence ID" value="MCI98280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WMR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI98280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7433" checksum="A6D4FD6A358E38F1" modified="2018-12-05" version="1" fragment="single">PEEESQLMNTKQVKESVKEHAELFAVFASLKLESEVKVEELPVVCEFPGVFPGDVSDVPPEREVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MXS4</accession>
    <name>A0A392MXS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide repeat protein 37-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020523">
        <property type="protein sequence ID" value="MCH91488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MXS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055087">
        <property type="term" value="C:Ski complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039226">
        <property type="entry name" value="Ski3/TTC37"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15704">
        <property type="entry name" value="SUPERKILLER 3 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15704:SF7">
        <property type="entry name" value="SUPERKILLER COMPLEX PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH91488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="19864" checksum="5824CE60878572D8" modified="2018-12-05" version="1" fragment="single">EASEVARKSARSFMNISCIWKLHADIQLAYARCNPWIEEVQKLESDKEAFSASIISWRKTRFLAARHARFSYQRALHLSPWQANIYSDIAVTSDLITSLSKNFKQDLSARQLAEKMSIGALLLEGDNYEFWVALGCLSDHNALNQHALIRGLQLNVSLAVAWGYLGKVLSHAISKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N424</accession>
    <name>A0A392N424_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Miraculin</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027406">
        <property type="protein sequence ID" value="MCH94471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004866">
        <property type="term" value="F:endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd23375">
        <property type="entry name" value="beta-trefoil_STI_VvMLP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.80.10.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011065">
        <property type="entry name" value="Kunitz_inhibitor_STI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002160">
        <property type="entry name" value="Prot_inh_Kunz-lg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33107">
        <property type="entry name" value="KUNITZ TRYPSIN INHIBITOR 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33107:SF78">
        <property type="entry name" value="NODULE CYSTEINE-RICH (NCR) SECRETED PEPTIDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00197">
        <property type="entry name" value="Kunitz_legume"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00452">
        <property type="entry name" value="STI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50386">
        <property type="entry name" value="STI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0964">Secreted</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22161" checksum="F6F97C4E3F2DF344" modified="2018-12-05" version="1">MLLTFFMTTKPLHGAEKPEPVRDTSGNLVRNTANYFILPSSIQCGTRCGIALLNTNKTCPLDVVQEDEAMQFSFVPFNFKKGVIRVSTDLNVIHSFPTNCSTSSVTVWKVDKVDVVTGQRFVTTGSVRGNPGRETVDNWFKIXRFESGYKFVFCPKVCEXCEVVCKDVGIFLDENRNTRFVLSDFAFGVKFKRACCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4E0</accession>
    <name>A0A392N4E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Maturase K</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027675">
        <property type="protein sequence ID" value="MCH94591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="31"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="188"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="27552" checksum="A43C1F8D28CAEF21" modified="2018-12-05" version="1">MFTALSRFVAKSAQHALPLFKLLRKESTFEWTEECKNALQHLKRALTEPPVLTQPIEGEILYLYIAVASEAISAILIRETEQGQKPVYFVSKALQGLELRYLQIEKMPLVVVVAARKLRHYFLAHSIVVRTDQPIKQLLARPDMTGRMLKWSLELAEFDILYESRKALKVQVLADFIAEMTNPTTPEKDKWTIFVDGSSNSQGSGAEQESFSKMAKGSSTKSPLDSLSQQRIIKPNTKPSWQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NFU6</accession>
    <name>A0A392NFU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA helicase MCM9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038257">
        <property type="protein sequence ID" value="MCH98680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NFU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017116">
        <property type="term" value="F:single-stranded DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF48">
        <property type="entry name" value="DNA HELICASE MCM9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00493">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50051">
        <property type="entry name" value="MCM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM C-terminal AAA(+) ATPase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH98680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3936" checksum="CC828A41FC4345AA" modified="2018-12-05" version="1" fragment="single">MEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NHT9</accession>
    <name>A0A392NHT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ATP-dependent helicase HRQ1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010038540">
        <property type="protein sequence ID" value="MCH98789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NHT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036297">
        <property type="term" value="P:interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47957">
        <property type="entry name" value="ATP-DEPENDENT HELICASE HRQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47957:SF3">
        <property type="entry name" value="ATP-DEPENDENT HELICASE HRQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH98789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13077" checksum="6197CE0E6AAD9D24" modified="2018-12-05" version="1" fragment="single">ERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAIYVAFGGPLDQYFMNNPRKLFERSIECCHIDSQNKQTLFRFLNSIWSVQLMNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMZ9</accession>
    <name>A0A392NMZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ras-related protein RABA1f-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the small GTPase superfamily. Rab family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045591">
        <property type="protein sequence ID" value="MCI01231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001447">
        <property type="entry name" value="Ras-related protein Rab-1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050209">
        <property type="entry name" value="Rab_GTPases_membrane_traffic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47979">
        <property type="entry name" value="DRAB11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00175">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00173">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00174">
        <property type="entry name" value="RHO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51419">
        <property type="entry name" value="RAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51421">
        <property type="entry name" value="RAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15826" checksum="F47590B723668D18" modified="2018-12-05" version="1" fragment="single">YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSTDDAKAFAERENTFFMETSALESLNVDNSFTEVLTQIYRVVSRKTLEIGDDPAALPKGQTINVGRDDVSAVKKVGCCSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRC1</accession>
    <name>A0A392NRC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046617">
        <property type="protein sequence ID" value="MCI01616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="7028" checksum="2379A6CDA80A1BD4" modified="2018-12-05" version="1" fragment="single">MVRNFYLNLYKEENPIRDPIISWTTYPQHLETDHRKLSSPVHFSECKQALFDMGPHKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYR7</accession>
    <name>A0A392NYR7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Tubulin alpha chain</fullName>
        </recommendedName>
    </protein>
    <organism evidence="17 18">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">cv. 10/8</strain>
            <tissue evidence="17">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 14">Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="13">
            <dbReference type="Rhea" id="RHEA:19670"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the tubulin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055283">
        <property type="protein sequence ID" value="MCI04400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005200">
        <property type="term" value="F:structural constituent of cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1330.20:FF:000001">
        <property type="entry name" value="Tubulin alpha chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1440:FF:000040">
        <property type="entry name" value="Tubulin alpha chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="entry name" value="Tubulin/FtsZ, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="entry name" value="Tubulin/FtsZ, GTPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002452">
        <property type="entry name" value="Alpha_tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000217">
        <property type="entry name" value="Tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017975">
        <property type="entry name" value="Tubulin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11588">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03953">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01162">
        <property type="entry name" value="ALPHATUBULIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01161">
        <property type="entry name" value="TUBULIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="Tubulin C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="Tubulin nucleotide-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00227">
        <property type="entry name" value="TUBULIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="10 14" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 14" id="KW-0493">Microtubule</keyword>
    <keyword evidence="7 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tubulin/FtsZ GTPase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Tubulin/FtsZ 2-layer sandwich" evidence="16">
        <location>
            <begin position="145"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="17">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00034296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00049117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="MCI04400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="267" mass="29323" checksum="859F4488E11A7F63" modified="2018-12-05" version="1" fragment="single">LYVYFSVGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZW9</accession>
    <name>A0A392NZW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010057245">
        <property type="protein sequence ID" value="MCI05004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13149" checksum="BEE22231E1F95BD4" modified="2018-12-05" version="1" fragment="single">IHKKNHRNQVFYSFVEPNEKDGSKLHRAENGSTTTTLKTAANTTTAMKTAVHHHVYNRCCATFLIGVAATIVELFLFLHSNSSSVVVEGSSNTRKGGLNWISNRFFNPFTMPKTTPHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P402</accession>
    <name>A0A392P402_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Solute carrier family 25 member 48-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060513">
        <property type="protein sequence ID" value="MCI06036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P402"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7538" checksum="7DDD67E47C9FF827" modified="2018-12-05" version="1" fragment="single">YVSMERRLLKWKRPGNKFHRFTGIHPSDRSILFRGLGLRMARSGVASFMIVGSYLFVVDHLASGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4M5</accession>
    <name>A0A392P4M5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-methyl-6-phytylbenzoquinone methyltransferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061677">
        <property type="protein sequence ID" value="MCI06389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4M5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051741">
        <property type="term" value="F:2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044649">
        <property type="entry name" value="MPBQ/MSBQ_MT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44516">
        <property type="entry name" value="2-METHYL-6-PHYTYL-1,4-HYDROQUINONE METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44516:SF4">
        <property type="entry name" value="2-METHYL-6-PHYTYL-1,4-HYDROQUINONE METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5824" checksum="55DFBB5ED1A9D10A" modified="2018-12-05" version="1" fragment="single">LGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKGQPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAS0</accession>
    <name>A0A392PAS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070366">
        <property type="protein sequence ID" value="MCI08797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7047" checksum="BE9BCBDD83005848" modified="2018-12-05" version="1" fragment="single">FATVWFNQHRLPRGGGRWFAVVIPTPPTEPPHGFLTSRCHPLARRRFQVHKGREVVVHPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBS0</accession>
    <name>A0A392PBS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrovirus-related pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070743">
        <property type="protein sequence ID" value="MCI08900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="2">
        <location>
            <begin position="156"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="21"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="24316" checksum="F5117047C6CA6097" modified="2018-12-05" version="1" fragment="single">HDHQPIAPIPQIHVDSTDLEPINPIHVHNNNPPTSDPPPPTIPTPDPPSPTIGPSTQIPTPTQTLRKSTRITQRPVYLQDFHCDLLKSQQTPPQTSSISEFPLCSVLSYDKCLGSYKTFCLNISSITEPRSFSQASKHDCWLTAMNHELQALESTNTWSIIDLPHGKTPIGCKWVYKIKYNADGTIERYKARLVAKGYTQVEGVDYFDAFSPVAKLTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCS4</accession>
    <name>A0A392PCS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072090">
        <property type="protein sequence ID" value="MCI09289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14951" checksum="C52AE6D68AEDA1D3" modified="2018-12-05" version="1" fragment="single">MIKSVLQVIPSYVMSVYLLPDSTIKEIERMINSFWWGGGANNKGIKWLAWDRMTFPKALGGMGFRDLHKFNLAMIAKQGWNIMTKPHTLVARIYKARWIIGHGTKINVMSDPWLREKLRWSLDTITTIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE88</accession>
    <name>A0A392PE88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ulp1 protease family carboxy-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073876">
        <property type="protein sequence ID" value="MCI09790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12842" checksum="81C47CA2CE41E1A4" modified="2018-12-05" version="1" fragment="single">MNGPPQQRKRPIPPDWDTIPYDSPAAEFVVKPSTMAPDQECQSFVPRLEDLKDDELYGHIRRKKNLLDTAGRNLPDRGARLRASIRSYEDEFSAVQQKVDEEQMEMLDELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEG2</accession>
    <name>A0A392PEG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box/FBD/LRR-repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074138">
        <property type="protein sequence ID" value="MCI09860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd22160">
        <property type="entry name" value="F-box_AtFBL13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1280.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036047">
        <property type="entry name" value="F-box-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053781">
        <property type="entry name" value="F-box_AtFBL13-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001810">
        <property type="entry name" value="F-box_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055294">
        <property type="entry name" value="FBL60-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31293:SF12">
        <property type="entry name" value="RNI-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00646">
        <property type="entry name" value="F-box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81383">
        <property type="entry name" value="F-box domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50181">
        <property type="entry name" value="FBOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F-box" evidence="1">
        <location>
            <begin position="5"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="26181" checksum="6698B1D7CF43A552" modified="2018-12-05" version="1" fragment="single">MSPLTDRISTLPDALLHHIISFLPTKEAAATITLSKRWKPLLSIINLDDQHFPNPSAFCEMFNSFTTNRDKTLPIHSFQLTCRHNHYCKDDIPNFVNAVVQRNVENLGIDLSNSLFPAFVLTTKFLSVLKLKXLLLDDFRSVDLPSLKFLRLESVTFAXYSYIIKILSACPVLEELETKDLTVKKIYRVHRDCPDTYVTGLSKLARANISGRHVFYDCLNNAEHLQLHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF92</accession>
    <name>A0A392PF92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072998">
        <property type="protein sequence ID" value="MCI09535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13606" checksum="D809E435D9C603C3" modified="2018-12-05" version="1" fragment="single">KVLANRLKPVLDQCILDNQSAFIPGRSILDNAMAAIKIIHYMKSKARGKEGGAASKSWDMNRIRRLFDSNTVTCIEQTPLFESVCDDTLVWKLEHDGNYSVGSAYNLCVNIACMHDRFRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFM4</accession>
    <name>A0A392PFM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010075051">
        <property type="protein sequence ID" value="MCI10106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5481" checksum="55EABD40EED9F895" modified="2018-12-05" version="1" fragment="single">GEGKVPSVPEVAEKWTSPVVQVEPSQQPTSSSAYRESSSRSFFDSVVLVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PI03</accession>
    <name>A0A392PI03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(H) kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079489">
        <property type="protein sequence ID" value="MCI11267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10328" checksum="73FE64571219DA39" modified="2018-12-05" version="1" fragment="single">MEQGNSSVSSCSQAENGFISSFSLFPEKAVQELLQSPIQGSDDHLIEFSEALRTVAKALRKVAEGKASAQAEAAEWKRKFEXERTRNLQLEDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJE1</accession>
    <name>A0A392PJE1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078561">
        <property type="protein sequence ID" value="MCI11025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJE1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008311">
        <property type="term" value="F:double-stranded DNA 3'-5' DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748">
        <property type="entry name" value="AP ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748:SF11">
        <property type="entry name" value="OS07G0184032 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI11025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="246" mass="27763" checksum="4CBF71859D5F7C59" modified="2018-12-05" version="1" fragment="single">MIGSTGWLCRAEIRWLWMTSRRSGKLLGFISRVSMRICLVCSLGREKLRNQHQGRRREGGVFDEDCLLERQGSGGAEKRQEVRKLVGNQNPILFCIQETKLQSCNAFICSSLWGNSSHGFSYRPSVGVSGGLLTLWDSSEVEVWSSESNDHVLWCHGWFINSSDEFSVANVYAPCDSGAKQELWDSLSVRIQALGRARVCIYGDFNAVRSVEEQRSDRGGHRSLDSISFNRFIEDNTLFDLPLSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PNH6</accession>
    <name>A0A392PNH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085816">
        <property type="protein sequence ID" value="MCI12846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PNH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017288459" evidence="2">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5865" checksum="0F4F8CA43D4FA1E3" modified="2018-12-05" version="1" fragment="single">HIRPLELLHNNVEKRTLLLLVLLAPPPSQIQAERVQPTERRIQHGALPSALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWE6</accession>
    <name>A0A392PWE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase catalytic region</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098990">
        <property type="protein sequence ID" value="MCI16007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222">
        <property type="entry name" value="GAG_PRE-INTEGRS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34222:SF99">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10257" checksum="9FE44E20126BE032" modified="2018-12-05" version="1" fragment="single">TQVLLMDPLPTINKVYSLVVQEESNHTMVNPVVPNTGDSTVLVNASDARKSFNHGKSPMYAGKGKGDTRHCTFCDKNGHTVDWCYKKHGNPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0G7</accession>
    <name>A0A392Q0G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ethylene-responsive transcription factor 1B-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104984">
        <property type="protein sequence ID" value="MCI17329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009873">
        <property type="term" value="P:ethylene-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00018">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.730.10:FF:000001">
        <property type="entry name" value="Ethylene-responsive transcription factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044808">
        <property type="entry name" value="ERF_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190">
        <property type="entry name" value="DNA-BINDING DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31190:SF314">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF094"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00847">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00367">
        <property type="entry name" value="ETHRSPELEMNT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="8">
        <location>
            <begin position="75"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI17329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="220" mass="24638" checksum="D8F740BDCC3EAE61" modified="2018-12-05" version="1" fragment="single">SWELQEFTNYFNDEDINFNNSSQSQTKEFNSTLSFLNNESLQVSSNTTNTQVINETQTTSPPPPPQTIKESKKSSFRGVRARPWGKFAAEIRDSTRKGARVWLGTFDTAEAAALAYDQAAFSTRGSSAVLNFPEALVKASLKEMAKNSKPLEEGTSPVLAIKNKHTRRKRSNKVIQKKIKSDYHSDQIKTQIKDNTNSQNVLVLEDLGAEYLEQLLSLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1K3</accession>
    <name>A0A392Q1K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide repeat protein 7A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107955">
        <property type="protein sequence ID" value="MCI17984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043376">
        <property type="entry name" value="NPG1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44102:SF19">
        <property type="entry name" value="CALMODULIN-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44102">
        <property type="entry name" value="PROTEIN NPG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14736" checksum="EFE9CDA6B7C5A997" modified="2018-12-05" version="1" fragment="single">VDNKLQEIVSHAVELLPELWKQGGCYDEAISAYRRALLSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCAGKIKWDPSIMEHLTFALSCFESAKEVLAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q881</accession>
    <name>A0A392Q881_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117868">
        <property type="protein sequence ID" value="MCI20049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q881"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7212" checksum="56586A7FAC8E8A05" modified="2018-12-05" version="1" fragment="single">MGMLRKVVDGQIIIPDQYKQMEADDEDEEELEEEDNARRGTRRAMAKATVDSCSDHLSMRAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAS0</accession>
    <name>A0A392QAS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stem-specific protein TSJT1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123887">
        <property type="protein sequence ID" value="MCI21228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QAS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024286">
        <property type="entry name" value="DUF3700"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044828">
        <property type="entry name" value="TSJT1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45952">
        <property type="entry name" value="ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45952:SF4">
        <property type="entry name" value="ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12481">
        <property type="entry name" value="DUF3700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01172">
        <property type="entry name" value="DUF3700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3700" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9568" checksum="E7A2A80D5DBC9D77" modified="2018-12-05" version="1" fragment="single">ADGSVPFFWGTDADGNLVLSDEIETVTKSCGKSSAPFPKGCFFTTSGGLSSFEHPLNELKPVPRVDSSGHVCGATFKVDAEAKKESTGMPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAT9</accession>
    <name>A0A392QAT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122725">
        <property type="protein sequence ID" value="MCI20989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019199">
        <property type="term" value="F:transmembrane receptor protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045087">
        <property type="term" value="P:innate immune response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044812">
        <property type="entry name" value="CERK1/LYK3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46204">
        <property type="entry name" value="CHITIN ELICITOR RECEPTOR KINASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46204:SF15">
        <property type="entry name" value="LYSM DOMAIN RECEPTOR-LIKE KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI20989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14665" checksum="CD23CB1981363914" modified="2018-12-05" version="1" fragment="single">MQIALDVARGLEYIHEHSVPVYIHRDIKPDNILLNENFTAKIADFGVTKLTDIANSTDQTHHTAGTFGYMPPENAYGXISRKIDVYAFGVVLYELISAKAAVIKIDKTEFKSLEITTNESIDEYYTSLVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDV5</accession>
    <name>A0A392QDV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130903">
        <property type="protein sequence ID" value="MCI22521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9036" checksum="15D3351C3F9C453B" modified="2018-12-05" version="1" fragment="single">MTLEEAYEEFTGELQEHYEEDKILAEECTRCXXXXXXXXXXXXGTFTVTCCIGQAKERALCDLGSSISLMPLSFATKWKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLH3</accession>
    <name>A0A392QLH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010145146">
        <property type="protein sequence ID" value="MCI25068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5216" checksum="D65F37085959DFF4" modified="2018-12-05" version="1" fragment="single">MAMARRVMTHEWRQWQVVGWRMVSDECREVFGGDGKDGVCLVATM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPR1</accession>
    <name>A0A392QPR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149744">
        <property type="protein sequence ID" value="MCI25844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010471">
        <property type="entry name" value="DUF1068"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32254">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32254:SF23">
        <property type="entry name" value="PLANT_T7A14-6 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06364">
        <property type="entry name" value="DUF1068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12198" checksum="92699615CF87152A" modified="2018-12-05" version="1">MRQDPEVSEEAGKSFTDLLSEELKQKEAEAEEKQRYADILLLESKKIASQYQKEADKCNSGMETCEGARERAETALQNQMKETALWELRARQRGWKPSAKKALDNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQI9</accession>
    <name>A0A392QQI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Protein TRANSPARENT TESTA 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the WIP C2H2-type zinc-finger protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151998">
        <property type="protein sequence ID" value="MCI26229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.60:FF:000523">
        <property type="entry name" value="Zinc finger protein WIP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055187">
        <property type="entry name" value="C2CH-3rd_BIRD-IDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043584">
        <property type="entry name" value="WIP1/2/3/4/5/6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059161">
        <property type="entry name" value="Znf-C2H2_STOP1/2_3rd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45878">
        <property type="entry name" value="ZINC FINGER PROTEIN WIP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45878:SF24">
        <property type="entry name" value="ZINC FINGER PROTEIN WIP3-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22995">
        <property type="entry name" value="C2CH-3rd_BIRD-IDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23115">
        <property type="entry name" value="zf-C2H2_STOP2_3rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0804">Transcription</keyword>
    <keyword evidence="6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="STOP2/WIP2-like C2H2-type zinc finger" evidence="12">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="BIRD-IDD transcription factor third C2HC zinc finger" evidence="11">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="88"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF22995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF23115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI26229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="14177" checksum="2505CD17283FCE37" modified="2018-12-05" version="1">MLRLPCYCCANGCKNNINHPRARPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPNPSLEGFEDEKECSNTGSDDDEVVHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QS70</accession>
    <name>A0A392QS70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158171">
        <property type="protein sequence ID" value="MCI27241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QS70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5004" checksum="38014E7D6B77E17B" modified="2018-12-05" version="1">MKRERRDCGKEERRGNEEIVAAATSGQSPPGDISTPTTCLLSRGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QU89</accession>
    <name>A0A392QU89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160154">
        <property type="protein sequence ID" value="MCI27567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QU89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6208" checksum="6292A24B3878F429" modified="2018-12-05" version="1" fragment="single">MDIYTLKRNTRTSVGCCGILIRPAAYPVIDVEGYKEAARAVIDDYVTGASPNNQEST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVX5</accession>
    <name>A0A392QVX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal RNA small subunit methyltransferase NEP1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166307">
        <property type="protein sequence ID" value="MCI28513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10425" checksum="73A5E4DB1055C1F6" modified="2018-12-05" version="1">MTRAYRVKGKKRKNKYHREQEEQVQPKKPNLQKEIIREENNNNELIGIPIAPPTENNSXKPGVIFILEKASLEIAKVGKLLKTAYIMSISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWE2</accession>
    <name>A0A392QWE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">MFS transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010161698">
        <property type="protein sequence ID" value="MCI27836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044770">
        <property type="entry name" value="MFS_spinster-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23505:SF72">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY (MFS) PROFILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23505">
        <property type="entry name" value="SPINSTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI27836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17674" checksum="E31F76B19B5793F5" modified="2018-12-05" version="1" fragment="single">DISPIFAEIVPERSRTSVYALDRSFESILSSFAPPAVGILAQHVYGYKPIPEGSSMSQEILTDRENAASLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARMEALIESEMQHIESDGLVVDKPEELSVGDYDGDDVDLDDEENILLHRQLTLSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0X1</accession>
    <name>A0A392R0X1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010171026">
        <property type="protein sequence ID" value="MCI29205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0X1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2878" checksum="BDFAF47D674B7113" modified="2018-12-05" version="1" fragment="single">SFYWAVTALSARFSANPRMTSAKMLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R191</accession>
    <name>A0A392R191_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Copia-type polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010178907">
        <property type="protein sequence ID" value="MCI30348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R191"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF515">
        <property type="entry name" value="GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="84" mass="9135" checksum="3C037807BBE41672" modified="2018-12-05" version="1" fragment="single">GKNCKLTGFTDASWCGDMEDKKSTVGYMFLIGNAPISWCSKKEQVVALSSCEAEYIAASMCATQAIWLRNLMEEITGEVSDAVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5D6</accession>
    <name>A0A392R5D6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetate/butyrate-CoA ligase AAE7 peroxisomal-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010187123">
        <property type="protein sequence ID" value="MCI31439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5D6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859:SF7">
        <property type="entry name" value="ACETATE_BUTYRATE--COA LIGASE AAE7, PEROXISOMAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43859">
        <property type="entry name" value="ACYL-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="6">
        <location>
            <begin position="5"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI31439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="12903" checksum="62E22F94DCF78632" modified="2018-12-05" version="1" fragment="single">MSQLGFRITHQYGLSETFGPSVYCAWKKEWDSLPPESKARLHARQGVRYIALENLEVVNTKTMQPVPPDGKTIGEIVMRGNVVMKGYLKNPKANEEAFANGWFHSGDLAVKHEDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5F1</accession>
    <name>A0A392R5F1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190304">
        <property type="protein sequence ID" value="MCI31813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5F1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5088" checksum="159191BF44CA955D" modified="2018-12-05" version="1" fragment="single">EEGVERRWCGREGLGTTGFEGYILKQRFGLGGGWGLLLVYGGRTVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RA52</accession>
    <name>A0A392RA52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205073">
        <property type="protein sequence ID" value="MCI33528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RA52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="9088" checksum="70A75E61D3BD44F7" modified="2018-12-05" version="1" fragment="single">WQNTLLPGEIMHRQAIWTKIHCRIATRVLFKPPFSTSVAICRQAIPGESCLWLALFVARKPIFYWTCVASCRQARVGEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFP2</accession>
    <name>A0A392RFP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217770">
        <property type="protein sequence ID" value="MCI34854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8531" checksum="D47467D0233FDB03" modified="2018-12-05" version="1" fragment="single">MREPDKDEGKHSRRREPDKDDENIVAVVSRTKMKETLSHAHEPDKDKGKLLQVREPDKDKGKLSQVRKPDKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RHT7</accession>
    <name>A0A392RHT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010220738">
        <property type="protein sequence ID" value="MCI35155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RHT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10447" checksum="EDDD4348641D1849" modified="2018-12-05" version="1" fragment="single">MVDQPGWHVENVMENQPERHVDNMVDQPERHVENVDSLVHVVDQPEICVVDQLGRHVEPETSIHADTQSEPPQESSKFSKRSLQLLRTSQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNE2</accession>
    <name>A0A392RNE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010246327">
        <property type="protein sequence ID" value="MCI37604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="11070" checksum="370560EB8E3D4342" modified="2018-12-05" version="1" fragment="single">MLRTSGEQILFNVFEAMRRHEEEEPQCYCVEVIEALEDKCKGQPSNPPFERVVVDPNDVQEAEWDHEIEIFLEQLEDDLEETPKVVEKPPELKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTG6</accession>
    <name>A0A392RTG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-binding (RRM/RBD/RNP motif) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010273897">
        <property type="protein sequence ID" value="MCI39941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6721" checksum="077181F465B453E6" modified="2018-12-05" version="1">MDSVEDANRCIKYLNQSVLEGRYITVERNALHQLCWQQSKMISSSMSTLVKQLDQMQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RW83</accession>
    <name>A0A392RW83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010272245">
        <property type="protein sequence ID" value="MCI39826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RW83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4992" checksum="F19119AB39EF0871" modified="2018-12-05" version="1" fragment="single">FATRWPPFLRIHDRIARQASDVKQARDLRVTDRQASGRARGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWS5</accession>
    <name>A0A392RWS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010284416">
        <property type="protein sequence ID" value="MCI40829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4574" checksum="84FFC74322052AFF" modified="2018-12-05" version="1" fragment="single">MSSRGGRLGDLRLGLLGYGRLPVISSLIRLSLLRWFLWML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S776</accession>
    <name>A0A392S776_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box/kelch-repeat protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332079">
        <property type="protein sequence ID" value="MCI44539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S776"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6120" checksum="E6BF4A8B835624A3" modified="2018-12-05" version="1" fragment="single">MSISLVDVSKLEDLKGSSAEQLWETIAGKGHFKTLITNLLSSLAGNRLKTHIVHCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH63</accession>
    <name>A0A392SH63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010377274">
        <property type="protein sequence ID" value="MCI47802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7841" checksum="ACA95980F23708DA" modified="2018-12-05" version="1" fragment="single">MSVGGQRYEKTAGQWALRSDAQLIIQRPTGTPANSDEADTGTHADVEIPPFLNRKRASGSPNPRKWFDTWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHX1</accession>
    <name>A0A392SHX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010380688">
        <property type="protein sequence ID" value="MCI48037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11515" checksum="7B48F6474EA32713" modified="2018-12-05" version="1" fragment="single">FKVIGGKYGEFLDFDEETASRSKLDVARIKIATSFRGSIDDPVKIKVLGVLYTIWVVEEKGFVPALFHGSRIDNQELSWVESSNFPAEAMEKLGEEDGGSTEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJC8</accession>
    <name>A0A392SJC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010387911">
        <property type="protein sequence ID" value="MCI48547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6313" checksum="088A2A5714D390FC" modified="2018-12-05" version="1" fragment="single">MSALPDAKKGLPNNKGSTSLSFAMTRMIKSAGNTNSATRTNGEYHTDAQWTDPQKIIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLF9</accession>
    <name>A0A392SLF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">60S ribosomal protein L27-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010405261">
        <property type="protein sequence ID" value="MCI49711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06090">
        <property type="entry name" value="KOW_RPL27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.770">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001141">
        <property type="entry name" value="Ribosomal_eL27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041991">
        <property type="entry name" value="Ribosomal_eL27_KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038655">
        <property type="entry name" value="Ribosomal_eL27_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10497">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01777">
        <property type="entry name" value="Ribosomal_L27e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="KOW" evidence="4">
        <location>
            <begin position="4"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI49711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10365" checksum="2FB639D32BEC24E6" modified="2018-12-05" version="1" fragment="single">MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRS5</accession>
    <name>A0A392SRS5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CCHC-type integrase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010419155">
        <property type="protein sequence ID" value="MCI50620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRS5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10491" checksum="A4E71A8068CD69AE" modified="2018-12-05" version="1" fragment="single">MILEEGHRSGLSIHPGVTKMYQDLKKLFWWPSMKKQISDFVYACLVCQKSKVEHQKPSGLLQPLFVPEWKWDSISMDFVGGLPRTVKGNEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUG5</accession>
    <name>A0A392SUG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010445226">
        <property type="protein sequence ID" value="MCI52299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4681" checksum="50E12D6A5454F13F" modified="2018-12-05" version="1" fragment="single">MSSLGEDESHWVRMMTSRRARWDLAGRDSSLLLARNLKTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1H8</accession>
    <name>A0A392T1H8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010488188">
        <property type="protein sequence ID" value="MCI54958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="11077" checksum="30F2FBF25C450AF1" modified="2018-12-05" version="1" fragment="single">VARPLEDICYYSGWLRCGNLIVMYLPERVLRQFGHIQTIPRLPSQSAQPLTTREHISSHYTHYLDWVLTPEQRGPAAIYSWYAAPGYMSWYFQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5J0</accession>
    <name>A0A392T5J0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010511224">
        <property type="protein sequence ID" value="MCI56373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5J0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4307" checksum="42201BBCA9F0AA72" modified="2018-12-05" version="1" fragment="single">MKDDLTIETVHVRIEGRKVKKLMNKEIASVKVVWGGPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7I5</accession>
    <name>A0A392T7I5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010512885">
        <property type="protein sequence ID" value="MCI56474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7I5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3301" checksum="9F288D9FB3F18BEB" modified="2018-12-05" version="1" fragment="single">EALARPSLSERVANSSPQLAAARHEQVILW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8X7</accession>
    <name>A0A392T8X7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010530785">
        <property type="protein sequence ID" value="MCI57541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8X7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI57541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9704" checksum="3DAE426590B9EEE9" modified="2018-12-05" version="1" fragment="single">MARFDVARIKILTATWAFLDLNLKVEAEGVRFNLWVVEERGRQSSVMVVGGEREEVGSLVVPSEGSDAVEDDFAGGADNSGEDEESGNEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T964</accession>
    <name>A0A392T964_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010515577">
        <property type="protein sequence ID" value="MCI56636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T964"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6065" checksum="7DE7F13A4B0F077C" modified="2018-12-05" version="1" fragment="single">MFTRLNRMLVAHVTARMVSRSKSAKFCRCMLSSAPHAQQFAPHAQIAVLQSCFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDL0</accession>
    <name>A0A392TDL0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010557140">
        <property type="protein sequence ID" value="MCI59098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF455">
        <property type="entry name" value="RLK (RECEPTOR-LIKE PROTEIN KINASE) 8, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8482" checksum="463539E0B32E365B" modified="2018-12-05" version="1" fragment="single">MAEPTLYRSIVGALQYATLTHPDIALSVNKVCQFMANPFESHWLAVKRILRYLKGTLNHGLLINPSTTSPPFSLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THW8</accession>
    <name>A0A392THW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010584541">
        <property type="protein sequence ID" value="MCI60598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7966" checksum="19C7E4A42B3BCB4C" modified="2018-12-05" version="1" fragment="single">MRLMKEEGIIITGADIAPVPTEDRKRKRVATSESGIDKAEVVVKESKKRVITSVSDKENVTKKQRTQKKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TM65</accession>
    <name>A0A392TM65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010604421">
        <property type="protein sequence ID" value="MCI61694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TM65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2997" checksum="D360A1991346891D" modified="2018-12-05" version="1" fragment="single">FRSLENSIVSLIPHNQYAAQPNKLQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQR2</accession>
    <name>A0A392TQR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010634974">
        <property type="protein sequence ID" value="MCI63322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="3868" checksum="58E30D5567CCDFA3" modified="2018-12-05" version="1" fragment="single">MASSSATTMKFFSFFLVAVFAAAVTSAQDLSPSLAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR27</accession>
    <name>A0A392TR27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CCHC-type integrase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010621113">
        <property type="protein sequence ID" value="MCI62566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="9091" checksum="90571B0EA791F18F" modified="2018-12-05" version="1" fragment="single">MILEEGHRSGLRIHPGVTKMYQDLKKLFWWSGTKKQISEFVYACLVCQKSKIEHQKLSGLLQPLFVPEWKWDNIAMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSA7</accession>
    <name>A0A392TSA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010643979">
        <property type="protein sequence ID" value="MCI63808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6904" checksum="AA56CFC63E977301" modified="2018-12-05" version="1" fragment="single">MLLVEEGLLSLIASPRGTYIPFHALYVDDVMIFCRGNLSNFKALKNLFRLYGEISGQLINQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSE0</accession>
    <name>A0A392TSE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010649465">
        <property type="protein sequence ID" value="MCI64111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5649" checksum="CD86EAA11B148637" modified="2018-12-05" version="1" fragment="single">MLETQLSQVAQQLAATAAPVETFLGQSQPNLEGHVNAIVLQSETDLESLVATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTK7</accession>
    <name>A0A392TTK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010637308">
        <property type="protein sequence ID" value="MCI63446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017443608" evidence="1">
        <location>
            <begin position="21"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5684" checksum="D1C68DBDD4E23AE7" modified="2018-12-05" version="1" fragment="single">MVLRVLNLMMLKINLMVVWSIEVLNVVEETGPDDLSLDQAIAQSLTEREL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TV46</accession>
    <name>A0A392TV46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010647124">
        <property type="protein sequence ID" value="MCI63986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TV46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6422" checksum="61A0EB558CE92388" modified="2018-12-05" version="1" fragment="single">MDRNILDAASGGALVDKTPAAAKALIENMSLNSQQFTNRNNSASVNEIQASSSSIKALETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TV66</accession>
    <name>A0A392TV66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010647454">
        <property type="protein sequence ID" value="MCI64006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TV66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6060" checksum="0FBCDD96AD281FB7" modified="2018-12-05" version="1" fragment="single">GRLLDHVPITKADGIDLMVRLLRSEVADVEIEVTKTKGAHARTTYLKALFKTHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYZ8</accession>
    <name>A0A392TYZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Organic cation/carnitine transporter 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010676165">
        <property type="protein sequence ID" value="MCI65450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9381" checksum="E8DB4D2A39544C2F" modified="2018-12-05" version="1" fragment="single">NSTESEKICIDEMLEKYCGEFGKWQLKHFILTSLAWALEAFHTMVMIFADREPDWSCVNGADCGGGGGSVCGMKAAEWEWIGGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZB9</accession>
    <name>A0A392TZB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010697125">
        <property type="protein sequence ID" value="MCI66522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7957" checksum="C93316E7CEDB07FE" modified="2018-12-05" version="1">MNNKPPIFKGGYDPDGAQTWLEGIERIFGAMRCLEVMFSTIKLIIGGEMQIRGWELMVQRLLGLVLRGNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U252</accession>
    <name>A0A392U252_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010697558">
        <property type="protein sequence ID" value="MCI66550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U252"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7151" checksum="F2FB6D3B3510D3C0" modified="2018-12-05" version="1" fragment="single">ATASESWRDMTGYFQVPGEKQRAPSLPLDVAHSATTQEHARLLLLDGRLVQRPSTNKMGFVAIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U3G0</accession>
    <name>A0A392U3G0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010720746">
        <property type="protein sequence ID" value="MCI67628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U3G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7622" checksum="A69B7B34194A9430" modified="2018-12-05" version="1" fragment="single">MAPFEALYGRKCRTPLCWFESRENVMLGPEIVQQTTEKIKMIRVKMRASQSRQKSYADKRRKDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7C2</accession>
    <name>A0A392U7C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010753014">
        <property type="protein sequence ID" value="MCI69282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4458" checksum="4B511A3514AB8668" modified="2018-12-05" version="1" fragment="single">MIVPSGRVQVVLEVLQRVKAVFTPWKEPTDEEITRDFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U8Z0</accession>
    <name>A0A392U8Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010744337">
        <property type="protein sequence ID" value="MCI68856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U8Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6345" checksum="5FBCE54A170D6C9F" modified="2018-12-05" version="1" fragment="single">MHETQKFAVDSNNQILAQGVSIKNLENQIGQIATTLNSRTTGALPSSTETPASTSNDKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9E8</accession>
    <name>A0A392U9E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010766812">
        <property type="protein sequence ID" value="MCI70002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5692" checksum="D78D1A623D45E1FE" modified="2018-12-05" version="1" fragment="single">MKNQFFSTFPPKDDTMSSSSQGSVGSNMFDGLAGESQPDDTPVLEDYWDALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAM1</accession>
    <name>A0A392UAM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010778421">
        <property type="protein sequence ID" value="MCI70563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6921" checksum="E957E2B995DD6AF4" modified="2018-12-05" version="1" fragment="single">RGEPIQIGEMIARSIKRMISRPDSYIGHPFVITTLCRLREVPTEEATDEISSPERPLGRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UH31</accession>
    <name>A0A392UH31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010827439">
        <property type="protein sequence ID" value="MCI72889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UH31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7056" checksum="8358A344D7CED4F4" modified="2018-12-05" version="1" fragment="single">MGKDDDDWWYVAEQENVVGNQMIADLDAELMNTNGITSATSPTLVDEFDVTEDIEESDNEVDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UH38</accession>
    <name>A0A392UH38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010827838">
        <property type="protein sequence ID" value="MCI72913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UH38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7099" checksum="57B2FD30F6020B2B" modified="2018-12-05" version="1" fragment="single">MDHEPYVPEAPPVISTIPPGAPMETIMAALVNAINRQGDLIREQNQRFEAQSQRLAVIEESRAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHK7</accession>
    <name>A0A392UHK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010831230">
        <property type="protein sequence ID" value="MCI73093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5120" checksum="B9C0099A0AD16AD5" modified="2018-12-05" version="1" fragment="single">GTYVQQMTGALTRKQMIAELTKTSRSLTERKHQVDLVITDLKAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHS9</accession>
    <name>A0A392UHS9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010829665">
        <property type="protein sequence ID" value="MCI73012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHS9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3876" checksum="9E916A0F3D7286D8" modified="2018-12-05" version="1" fragment="single">EAGVFGNFSWGKICRAWGEIANLFYYLEELRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMV1</accession>
    <name>A0A392UMV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010872070">
        <property type="protein sequence ID" value="MCI74969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2630" checksum="D441E356852194D8" modified="2018-12-05" version="1" fragment="single">MTEGGGKRRFKVRRWFLRYW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN03</accession>
    <name>A0A392UN03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010871724">
        <property type="protein sequence ID" value="MCI74951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3010" checksum="E6F24954BAFCBE38" modified="2018-12-05" version="1" fragment="single">MQGKVLSDGDKGWGLCVLMGVDDGAKDSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUU4</accession>
    <name>A0A392UUU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010980892">
        <property type="protein sequence ID" value="MCI79766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3535" checksum="AE6DF495CA6E72D2" modified="2018-12-05" version="1" fragment="single">DTVHALLFSDITVHARTVHRHYCSPSVVLFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V097</accession>
    <name>A0A392V097_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011004015">
        <property type="protein sequence ID" value="MCI80822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V097"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8801" checksum="B591F26D06200DA6" modified="2018-12-05" version="1" fragment="single">REDEARLERFMKHKPPTFTGEYNPEGAVKWLEEVEIIFEAMRCTEEDNTTLGSYMLREEANHWWKNARQRLGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4W8</accession>
    <name>A0A392V4W8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative iron/ascorbate oxidoreductase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011040291">
        <property type="protein sequence ID" value="MCI82309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4W8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3826" checksum="25FD9E179D9C70BF" modified="2018-12-05" version="1" fragment="single">CYREVTKGMYGDLGKVMEGYNQWYEQIRFFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAM3</accession>
    <name>A0A392VAM3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011069341">
        <property type="protein sequence ID" value="MCI83530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAM3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7086" checksum="43428919673EEB6C" modified="2018-12-05" version="1" fragment="single">MASSSQHHNNDGEDVNTTVHTSPRRTILSHVRNTDLQVLPETESRDGQDVSWASEDGDLVVLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VD51</accession>
    <name>A0A392VD51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011136567">
        <property type="protein sequence ID" value="MCI86296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VD51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5699" checksum="26CE399BB74A3C1D" modified="2018-12-05" version="1" fragment="single">MEGTTIHFFNSLIGEDEGLTWEVLKEALLERYGGHGEGDVYEQLTELKQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEW9</accession>
    <name>A0A392VEW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011153185">
        <property type="protein sequence ID" value="MCI86924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4160" checksum="0CAEF5219A16D936" modified="2018-12-05" version="1" fragment="single">MDIDYNSFELVIEQPVDFEALKANSFEVEKFFTDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJ03</accession>
    <name>A0A392VJ03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011178350">
        <property type="protein sequence ID" value="MCI87897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJ03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4104" checksum="319C6037CF4162AB" modified="2018-12-05" version="1" fragment="single">HSVLRACRQMAPGAVLGGRQLSPGEVVATWSPVVVSCRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VK42</accession>
    <name>A0A392VK42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CAP-Gly domain-containing linker protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011189050">
        <property type="protein sequence ID" value="MCI88287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VK42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6904" checksum="2AB0FCA2225F7BBC" modified="2018-12-05" version="1" fragment="single">MIVAALHFFESATNTFQFECGMMTPTLFDVATITGLPPTGETYDPFKFSNDIGFRVREKTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNJ3</accession>
    <name>A0A392VNJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011189306">
        <property type="protein sequence ID" value="MCI88295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5647" checksum="E5DA5E75BC1A13E1" modified="2018-12-05" version="1" fragment="single">MTGTSTSTPLGVHSDRISPAVSVEIVNEKRPREDDLGETHTSRKNRRVDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR54</accession>
    <name>A0A392VR54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011230046">
        <property type="protein sequence ID" value="MCI89899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6412" checksum="35BC744DCA0DA256" modified="2018-12-05" version="1" fragment="single">VNERFSSQQAQISEVVQNQKAMVVKQEEMAAKQEEFSTKQDAMSADLKVILAILSQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUH2</accession>
    <name>A0A392VUH2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011275912">
        <property type="protein sequence ID" value="MCI91577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4385" checksum="EC5CC0CDC65BAF5A" modified="2018-12-05" version="1" fragment="single">MELKQGSMTVSEYAAKFEDLCRFAPHYNTLEAEEDKCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0J2</accession>
    <name>A0A392W0J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tic22-like family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011349631">
        <property type="protein sequence ID" value="MCI94194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010133">
        <property type="entry name" value="Bacteriocin_signal_seq"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01847">
        <property type="entry name" value="bacteriocin_sig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35138:SF1">
        <property type="entry name" value="MYB-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35138">
        <property type="entry name" value="OS01G0225300 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6306" checksum="8EBBF6172D7E682B" modified="2018-12-05" version="1" fragment="single">DDLTKELEKTELDNISGGGSKECKLEDRDPLFVANVDDYYSSVGRTGTPRWIRGGSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W133</accession>
    <name>A0A392W133_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011328285">
        <property type="protein sequence ID" value="MCI93402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W133"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3740" checksum="232FC2704C88E9F6" modified="2018-12-05" version="1" fragment="single">MHQPLGLRDPHHPDYICRLKKSLYGLKQAPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W601</accession>
    <name>A0A392W601_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011378768">
        <property type="protein sequence ID" value="MCI95183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W601"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3157" checksum="6F9420E7410555F4" modified="2018-12-05" version="1" fragment="single">EVVEPLRFPGSEAVKPLKISEVLKYKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6D1</accession>
    <name>A0A392W6D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011408491">
        <property type="protein sequence ID" value="MCI96218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3298" checksum="E891AD7426F15B20" modified="2018-12-05" version="1" fragment="single">INRLLPPLDDGALPDAVGREGDGDFVEYPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8B1</accession>
    <name>A0A392W8B1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011384954">
        <property type="protein sequence ID" value="MCI95371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8B1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3106" checksum="50FB0364782BBD91" modified="2018-12-05" version="1" fragment="single">LFPPLDDEAAPDAADREDGEDFVEFPEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8S0</accession>
    <name>A0A392W8S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407633">
        <property type="protein sequence ID" value="MCI96179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6662" checksum="9236BCF026139DC8" modified="2018-12-05" version="1" fragment="single">VSKIFELNDTMLETASSQFHNTVAQIRALNAGIELNMEGLDEENEVCDGQVVPPQDEEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAK5</accession>
    <name>A0A392WAK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011395682">
        <property type="protein sequence ID" value="MCI95750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="4912" checksum="058F245FC6335FF1" modified="2018-12-05" version="1" fragment="single">MECRKSGVVVGARRASPWRKAPSLCAVKLLLLLAAQGAPASCATRGCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N261</accession>
    <name>A0A392N261_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Plasma membrane ATPase 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025836">
        <property type="protein sequence ID" value="MCH93811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N261"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000001">
        <property type="entry name" value="Phospholipid-transporting ATPase IC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1110.10:FF:000004">
        <property type="entry name" value="Plasma membrane ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.150.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059000">
        <property type="entry name" value="ATPase_P-type_domA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13246">
        <property type="entry name" value="Cation_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00122">
        <property type="entry name" value="E1-E2_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="Calcium ATPase, transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="P-type ATPase A" evidence="10">
        <location>
            <begin position="2"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCH93811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="314" mass="34506" checksum="58E76DD38DC7C16B" modified="2018-12-05" version="1" fragment="single">TKHPGQEVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAIDAAIARAGIREVHFLPFNPVDKRTALTYIDGNGNWHRASKGAPEQIMELCKLREDTKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESPGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8H2</accession>
    <name>A0A392N8H2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">U-box domain-containing protein 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029926">
        <property type="protein sequence ID" value="MCH95479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8H2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057623">
        <property type="entry name" value="PUB12-19-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25368">
        <property type="entry name" value="PUB10_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PUB 12/19-like N-terminal" evidence="1">
        <location>
            <begin position="40"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="11699" checksum="5FFD2895C224CEE8" modified="2018-12-05" version="1" fragment="single">MAGEFAGDNTPELLSLVHDITGMCVGGGGSSSLTADAMFRKDCTDLVRRISLLSHLFEEIKELNKVNGSPSSSSSTALEDSWSSDLVLALQSAKRLLSVAKNFSSNSTNSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKR8</accession>
    <name>A0A392NKR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cullin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043100">
        <property type="protein sequence ID" value="MCI00403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22825" checksum="76D22AE213A95667" modified="2018-12-05" version="1">MAPASTSSVQNPLNPLGLPHIVTLGKSLLLTGNVMQFNETLLKLCYDKMVDFESLKANDFDVEQLFLNQGWKRYFEMLNDPIFTKLIKEFWMKSKVYDELDAKMEEEQAVKKNPSLQDVTITKAHFAKLLSLENRGKKISEYNNEEYYRESIMKELYEDVSLLGKSRGLXNKCLVIFKIFISSIVPRSGGTDTISWEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMW7</accession>
    <name>A0A392NMW7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF7745 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045430">
        <property type="protein sequence ID" value="MCI01173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056647">
        <property type="entry name" value="DUF7745"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24924">
        <property type="entry name" value="DUF7745"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7745" evidence="2">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="106"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="190"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="36926" checksum="416AA8E793C6E8FB" modified="2018-12-05" version="1" fragment="single">PSLALRQLGYPVLNIPTMDKKDLFVIRDYTIEHTVLLRRICKSWHKVVKKGREIGPRSCHANKTYRDWVMNRALEVKLPFHCTISAPEEIIVEPFNNIEDLESDLSKRDQKIIEELQKELEKVQQAYRDLKYEKDQQSLDLENVCKRAREEEDKRRKTREGLWAANTELSKRNREKNMAVSESRECQKKLKVSCEKKDEYQIELEDLRQQLRSVRAEYESKITIEREQTGELIDAYQTALAKKEEEMHEQEGIIEEELIDTHSHARTHAHVHSHAYVQISNDILYIKSIVIPEQHYQQMHCHPSILPHYYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQ13</accession>
    <name>A0A392NQ13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription factor GTE4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045545">
        <property type="protein sequence ID" value="MCI01219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQ13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="40"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7083" checksum="D8D64CB0D44FA9E3" modified="2018-12-05" version="1" fragment="single">SQAPPVIVEVPRERQADERNAPPSLPVQGEIRVDNGSKTSSSSSSSSDSGSSSSDSDSDSSSASGSDAGSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYK0</accession>
    <name>A0A392NYK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cationic amino acid transporter 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054839">
        <property type="protein sequence ID" value="MCI04279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF515">
        <property type="entry name" value="GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="15421" checksum="EAC9058822FB4D43" modified="2018-12-05" version="1" fragment="single">YVFLLGGAPIAWSSKKESVVALSSCEAEYIAASLCACQAIWLMNLIDEIMGEDHGAVTMKIDNISAINLAKNPMAHGRSKHNEMRFHYLREQVNSGKLCLEHCRSEEQLADIMTKSVQTEVFKRMRNMIGLNSLATMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1P1</accession>
    <name>A0A392P1P1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058357">
        <property type="protein sequence ID" value="MCI05339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1P1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10246" checksum="223A645C3C70EE2B" modified="2018-12-05" version="1" fragment="single">IVFCLGWEGFLCCLSSRDCSGVGAVLDLHCLGLVFCFTPMVRCVMNDKARGKQVVAIDENITQKECPQNAELGRGKREKKASWKARAAQGVIIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P6Z8</accession>
    <name>A0A392P6Z8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063844">
        <property type="protein sequence ID" value="MCI07006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P6Z8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4416" checksum="2591ABC3F4C4AD01" modified="2018-12-05" version="1" fragment="single">ASIEVVANVALLPHEGVKTMVVVSAVPLGVVQLGSLTKTLYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7B3</accession>
    <name>A0A392P7B3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067276">
        <property type="protein sequence ID" value="MCI07963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7B3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008311">
        <property type="term" value="F:double-stranded DNA 3'-5' DNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748">
        <property type="entry name" value="AP ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748:SF11">
        <property type="entry name" value="OS07G0184032 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="6">
        <location>
            <begin position="8"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI07963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="239" mass="26826" checksum="464D64B621F1B597" modified="2018-12-05" version="1" fragment="single">MFPMIVSSINIRGLGGRVKRGLIKDLVKKEKIDFLAIQETKLEAVSDSLCFSLWGSEDCLWMSLPSEGNSGGILSIWCKSSSSLIFNFSGEGFVGVCLEWGVQKQIYFVVNVYSKCDLAGKRRLWNTLLMSKQGFGGGAWCVIGDFNAVLNREERRGVNDTSFQSSPSEMVEFEAFVNSMDLVDLPVLVRKFTWFHPNGRTMSRIDRALVSEEWILSSGHPSLWILPRAVSDHCPLVMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7F6</accession>
    <name>A0A392P7F6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067447">
        <property type="protein sequence ID" value="MCI08008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7F6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18675" checksum="D07A2440454033A6" modified="2018-12-05" version="1" fragment="single">AGEGSSSRHSTVFGSVIYPDRDEIQIPNRFLNIWKEEICKDPDGCFKDPSHNFWNFRTSTVKKYNCFMSGRMLARYCGFTRPQNVIFDYEPGYNQFNMSFVDHDGADIKYLGLHYPTNYHQMRLNDPSIIVTPAYMHVVTGDDNQNGYVPVQWLQITSAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBG6</accession>
    <name>A0A392PBG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cysteine-rich receptor-like protein kinase 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070947">
        <property type="protein sequence ID" value="MCI08977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBG6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002:SF729">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002">
        <property type="entry name" value="RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Serine-threonine/tyrosine-protein kinase catalytic" evidence="7">
        <location>
            <begin position="23"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI08977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10521" checksum="5A373FAA5DAE4681" modified="2018-12-05" version="1" fragment="single">MKHAVYEDVNILMWIIMLFFSGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNHWNNADDLLSYAWKKWSEQTPLELLDPTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PG76</accession>
    <name>A0A392PG76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">THO complex subunit 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078811">
        <property type="protein sequence ID" value="MCI11088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PG76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000445">
        <property type="term" value="C:THO complex part of transcription export complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006406">
        <property type="term" value="P:mRNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040007">
        <property type="entry name" value="Tho2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21597:SF0">
        <property type="entry name" value="THO COMPLEX SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21597">
        <property type="entry name" value="THO2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7463" checksum="10F28344637BBAD1" modified="2018-12-05" version="1" fragment="single">ANKIGKINLAATGKDLMDDEKMGDVTIDLFAAIAMETDAIGERKSELQNSQTLGLLTGFLSVDDWYADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK77</accession>
    <name>A0A392PK77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydrodolichyl diphosphate synthase 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083104">
        <property type="protein sequence ID" value="MCI12192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009570">
        <property type="term" value="C:chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045547">
        <property type="term" value="F:ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009668">
        <property type="term" value="P:plastid membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016094">
        <property type="term" value="P:polyprenol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009409">
        <property type="term" value="P:response to cold"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="entry name" value="Decaprenyl diphosphate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291:SF0">
        <property type="entry name" value="DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="Undecaprenyl diphosphate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13424" checksum="B2CB0C6F42BA719A" modified="2018-12-05" version="1">MIVTKCDTMAAVANNIPKVALGDEVEGGTSLDEDLTMPAELKKELMPKHVAVIMDGNRRWAEMRGLPLSEGHIAGMKSLKRVVKLCLSWEIKVLTIFMFSTDNWARSKVSVSSVSDIGIHLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKH7</accession>
    <name>A0A392PKH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative LRR receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Endomembrane system</location>
            <topology evidence="7">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082381">
        <property type="protein sequence ID" value="MCI12009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013210">
        <property type="entry name" value="LRR_N_plant-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46084">
        <property type="entry name" value="PROTEIN MALE DISCOVERER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46084:SF1">
        <property type="entry name" value="PROTEIN MALE DISCOVERER 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08263">
        <property type="entry name" value="LRRNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Leucine-rich repeat-containing N-terminal plant-type" evidence="8">
        <location>
            <begin position="52"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00046288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI12009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11712" checksum="39595B72ED3AA9C0" modified="2018-12-05" version="1" fragment="single">FRLIKRDTGLRIYQSGHCVRTAMECICDRFGFWLRIYVGLISLWAIRRCWALNDEGIALLEFRERITSDPHGALVNWNPNDSDPCKWWGVRCVDGKVQIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM38</accession>
    <name>A0A392PM38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Tetratricopeptide repeat protein 4</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085805">
        <property type="protein sequence ID" value="MCI12842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030544">
        <property type="term" value="F:Hsp70 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051879">
        <property type="term" value="F:Hsp90 protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd21377">
        <property type="entry name" value="CTWD_Cns1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044059">
        <property type="entry name" value="Csn1/TTC4_wheel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46035">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46035:SF1">
        <property type="entry name" value="TETRATRICOPEPTIDE REPEAT PROTEIN 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18972">
        <property type="entry name" value="Wheel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Cns1/TTC4 wheel" evidence="4">
        <location>
            <begin position="22"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI12842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="18433" checksum="B91F82453158DCF5" modified="2018-12-05" version="1" fragment="single">RGLKIGKAMYRELTGLKKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMISFYKYDQPLPWDVENNYKREFIELYYEAGSGPRLSKEKLLRYLLEGTAAASNGEGIGDEEKDAVDNLKQNQSMLLLKFFLSLFPIHVWFLCLHDSISLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR73</accession>
    <name>A0A392PR73_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon Copia-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092977">
        <property type="protein sequence ID" value="MCI14583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029472">
        <property type="entry name" value="Copia-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37610:SF97">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14244">
        <property type="entry name" value="Retrotran_gag_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon Copia-like N-terminal" evidence="2">
        <location>
            <begin position="47"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI14583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17434" checksum="A9D12E90D4C634AB" modified="2018-12-05" version="1" fragment="single">MASERDSSDESEHDSSEEEIPEKNSHVSDKSKKAPAIDPSSPYYLNPSDNPGTPMVAAVLKGENYRTWSRSMKLALRAKVKLGFVDGTITKPGKKTTDYIYWERADSMVMAWITNATDPRLHSSISYASTAREIWLDLEERFAQTNAPRIHQLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSW7</accession>
    <name>A0A392PSW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CCHC-type integrase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094331">
        <property type="protein sequence ID" value="MCI14924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF15">
        <property type="entry name" value="INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="49"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="22498" checksum="529FDBC5061D3AA3" modified="2018-12-05" version="1" fragment="single">HELQVAVQQDEDIQQIMRACQRQEESTMLYTVKEGLLLYRDKLVVPNSPDIKKQILTEFHTSHMGGHAGILRTIARIQAQFYWKNMRQDIKEYVQQCLICQQAKTSNSVPAGLLQPLPIPDQVWEDVAMDFITGLPNSFGFSVIMVVIDRLTKYSHFVAQKTEYTSRTLFLAAFIQTTRNLPSHEHCISSTNGWTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUI6</accession>
    <name>A0A392PUI6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Beta-amylase</fullName>
            <ecNumber evidence="4">3.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Hydrolysis of (1-&gt;4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.</text>
            <dbReference type="EC" id="3.2.1.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.2" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010097837">
        <property type="protein sequence ID" value="MCI15758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016161">
        <property type="term" value="F:beta-amylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001554">
        <property type="entry name" value="Glyco_hydro_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31352">
        <property type="entry name" value="BETA-AMYLASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31352:SF3">
        <property type="entry name" value="INACTIVE BETA-AMYLASE 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01373">
        <property type="entry name" value="Glyco_hydro_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI15758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9757" checksum="B55B0367C46DD15A" modified="2018-12-05" version="1" fragment="single">MESTITGISMGLGPDGELRYPSHHELPSNRKIQGVGEFQCYDQNLLSSLKQHAESSGNPLWGLGGPHDVPTYDQSPYTSSFFKDGGSWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWD6</accession>
    <name>A0A392PWD6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097247">
        <property type="protein sequence ID" value="MCI15626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10749" checksum="A344F1EE2E6DA2C2" modified="2018-12-05" version="1" fragment="single">MYGGAYQVQNSLFMQQLSIGSNADIPILEEPWIYDGFLFSVSSPNYXXXXXXVKVEHLIDNATNEWHKYVTNNLFDQGTTIAILRTPPLSSSYYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXU3</accession>
    <name>A0A392PXU3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103088">
        <property type="protein sequence ID" value="MCI16938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3443" checksum="EFC2C5B8D7D53612" modified="2018-12-05" version="1" fragment="single">MSLEDFGTVERDPWHDGDWCSTSVKVSTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYL2</accession>
    <name>A0A392PYL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104506">
        <property type="protein sequence ID" value="MCI17233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3920" checksum="E8CAE4047D6E7092" modified="2018-12-05" version="1" fragment="single">MKKKLKKTEGQDMVTIGKLYMVLEHPALMSAHFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1B9</accession>
    <name>A0A392Q1B9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105096">
        <property type="protein sequence ID" value="MCI17356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1B9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12125" checksum="5CEC62BE12D0E558" modified="2018-12-05" version="1" fragment="single">TAVFPKPEEDLQMMSGKAVAKSLKEHAEVFAMFASVLGLAPRAEVTCAARRMLFCFLFFSWSLRRTRGIAAPRAELCFRAGWFPGSCAARRFVLRRAQAWFVRVDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1S5</accession>
    <name>A0A392Q1S5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107262">
        <property type="protein sequence ID" value="MCI17842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1S5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="63"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="15719" checksum="59228CBC8DBF27B0" modified="2018-12-05" version="1" fragment="single">VWEDSEGNPLLNEDRQQVTSAKLIDTKKLLSCQTPEAVTAFFLEMTSAAVKLWQARNAKNKRQAAAGMGASTSGTLSGNVSPSPSIEITHERFVREDDLEDTSSRKHPKVDTVSGSRPGGPHRLHPGVPAGNFVLPLAFGHSPLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4S4</accession>
    <name>A0A392Q4S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ubiquitin-like modifier-activating enzyme 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112041">
        <property type="protein sequence ID" value="MCI18839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4S4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4974" checksum="CA14DF4BAF28E493" modified="2018-12-05" version="1" fragment="single">ALPEGLTHELPTADEFQNLVTPEAPTNDNDDLDELRRQLEAINSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8K5</accession>
    <name>A0A392Q8K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PAN domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117907">
        <property type="protein sequence ID" value="MCI20060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036426">
        <property type="entry name" value="Bulb-type_lectin_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51110">
        <property type="entry name" value="alpha-D-mannose-specific plant lectins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10867" checksum="DB75292B15AACAAD" modified="2018-12-05" version="1" fragment="single">MVQVPGKYEIGGFIGGGYXLETKTVPNFRVALSIEGVNGKFSCSLLVFLGDVKVWDSGHYSRFYVTGKCLLEFTMDGDLRLKGPNETLGWKTGTSGQGVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8R6</accession>
    <name>A0A392Q8R6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative strigolactone esterase D14</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120353">
        <property type="protein sequence ID" value="MCI20534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8R6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43039">
        <property type="entry name" value="ESTERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9886" checksum="2DDCF867D2C04C7A" modified="2018-12-05" version="1">MRSEVPLSLAKTVFCNDYRDILEKVETPCTIIQSSSDIVVPYSVALYMEKKIKGKVTLEVIDTIGHFPQLTSPLQLVDVLKGVLGFDLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q920</accession>
    <name>A0A392Q920_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121807">
        <property type="protein sequence ID" value="MCI20811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q920"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000125">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="20"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="51"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="113"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="16907" checksum="E90BC98623468E90" modified="2018-12-05" version="1" fragment="single">MRNGHCHLALRLFNDMPYRNLFSWNLMLAGYVKNRRLADARNLFDLMPQKDVVSWNTMLSGYVRSGCVDEAKLVFDNMPHKDSISWNGLLAVYVQNGRLEEARRLFESKSDWKLISWNCLMGGYVKRKMLGDARQLFDRMPVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9T3</accession>
    <name>A0A392Q9T3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120902">
        <property type="protein sequence ID" value="MCI20647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9T3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17942" checksum="9696639A953DB2D4" modified="2018-12-05" version="1" fragment="single">MPKFMHPFIEDIIDVKGDGYCGYGAVCLYNKGTEEDFELLRLNMKRELSLHKELYVKLFGGEDRLTYITDALFPPPRKSRHAVAPRDKWFTYPDMGFVVATLLERVVVLLSKVDRSGGSNTCFPLRGIPPSDLSDMSTKILCIGALPDHFVLVKLKQGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBF7</accession>
    <name>A0A392QBF7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123091">
        <property type="protein sequence ID" value="MCI21060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="45" mass="5060" checksum="C4248AA40B2343D1" modified="2018-12-05" version="1" fragment="single">MEGIDHKLCANLWGLDDFEFASKDANGRAGGILMMWDKKAFSLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDQ5</accession>
    <name>A0A392QDQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130695">
        <property type="protein sequence ID" value="MCI22471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10640" checksum="F05CFF0403C00B6C" modified="2018-12-05" version="1">MAIQIHEGHQFGLGRLILASLYESIGAACDNLKKLKDGSSFLVAGPIWLLQLLLNATFEDKMGLAVPADYTVEVVERQIEGTRLVRLAPHPRGQNSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QEE7</accession>
    <name>A0A392QEE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127328">
        <property type="protein sequence ID" value="MCI21886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QEE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3173" checksum="7477CD120AD96330" modified="2018-12-05" version="1" fragment="single">TTATTRNCNAMTFRVAPRSRYAAIEAAID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHN1</accession>
    <name>A0A392QHN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Kinesin-4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132425">
        <property type="protein sequence ID" value="MCI22805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHN1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7354" checksum="D5CD66D3C3BFBAD3" modified="2018-12-05" version="1" fragment="single">MFQIASLKAALGRKEVESEHSFTGSSEKYRTKASELSPYHINQRVADTGDQLRCRRPMVEVGNIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJP6</accession>
    <name>A0A392QJP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010140000">
        <property type="protein sequence ID" value="MCI24179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6838" checksum="584F2D20CCD47E7E" modified="2018-12-05" version="1" fragment="single">MEVDTDPQPKANANLVEVYDCNMVDVVDPAPIKAVPEKEYEKKIQEVYPNAEEELVDFLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R193</accession>
    <name>A0A392R193_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010176431">
        <property type="protein sequence ID" value="MCI30019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R193"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2742" checksum="98D53B9E0E45BC96" modified="2018-12-05" version="1" fragment="single">MYSGGGDGSRGDSQGIIYIGFKNNFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1E6</accession>
    <name>A0A392R1E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010179377">
        <property type="protein sequence ID" value="MCI30413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3235" checksum="B40DFA76BCA5E216" modified="2018-12-05" version="1">MMVFFGGLEAEECPSKNGIRSKPLLETSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R297</accession>
    <name>A0A392R297_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181524">
        <property type="protein sequence ID" value="MCI30698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R297"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17765" checksum="58E7D6D8C16E1402" modified="2018-12-05" version="1" fragment="single">VATVVNGEAVPVVQSRITDAGFHDVILIPMGADKVFVRSATGDVILAIFNNAIEFFQLVFSNWMRWDNNVQPYRRGAWVCLYGIPLQAWNVNFFKLCVFDCGRFLRADSCSVDKDRLDFARVLIATTDLDIVNRVEMVLVDGTLVEAKIVEEWGYALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2E4</accession>
    <name>A0A392R2E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Replication protein A 70 kDa DNA-binding subunit C-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010179319">
        <property type="protein sequence ID" value="MCI30409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04481">
        <property type="entry name" value="RPA1_DBD_B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11173" checksum="4BB0E6F71F0441E6" modified="2018-12-05" version="1">MDCTLWDSLSVQFIEFYNKLTDLGPVVLIIKHARVKEPQGNYPLQLTNVWDGTQLLFDQTIPEIKAFLSRFNIMTTNASKLLSYFLRRTFVIMLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R580</accession>
    <name>A0A392R580_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multiple C2 and transmembrane domain-containing protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010183416">
        <property type="protein sequence ID" value="MCI30950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R580"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.150">
        <property type="entry name" value="C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000008">
        <property type="entry name" value="C2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035892">
        <property type="entry name" value="C2_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047259">
        <property type="entry name" value="QUIRKY-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425:SF50">
        <property type="entry name" value="FT-INTERACTING PROTEIN 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31425">
        <property type="entry name" value="PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00168">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00360">
        <property type="entry name" value="C2DOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00239">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49562">
        <property type="entry name" value="C2 domain (Calcium/lipid-binding domain, CaLB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50004">
        <property type="entry name" value="C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="C2" evidence="1">
        <location>
            <begin position="22"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14488" checksum="B901B9A49B110FD8" modified="2018-12-05" version="1" fragment="single">MQRPPPEDFLLKETKPHLGGGKISGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASMLEVTVKDKDVVKDDFIGRVWFDLNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RB91</accession>
    <name>A0A392RB91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chaperone protein ClpB1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204046">
        <property type="protein sequence ID" value="MCI33392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19499">
        <property type="entry name" value="RecA-like_ClpB_Hsp104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050130">
        <property type="entry name" value="ClpA_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638:SF18">
        <property type="entry name" value="HEAT SHOCK PROTEIN 104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="4">
        <location>
            <begin position="72"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI33392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="13801" checksum="E5CA6B2BB6A8F4FB" modified="2018-12-05" version="1">MLTETVGPDQIAEVVSRWTGIPVTRLGQNEKERLVGLGDRLHTRVVGQDQAVNAVAEAVLRSRAXLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCP3</accession>
    <name>A0A392RCP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010207510">
        <property type="protein sequence ID" value="MCI33794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10338" checksum="9A74CFF917CE9C74" modified="2018-12-05" version="1" fragment="single">MSLSDFIDYIQHDLSGEMDSGNPSFSAERLDYLKMLDDVGQHLLSDNQVTIASNDNSFISRVSSLCNILQLDPAEVLNSLDKGPGKNIQLGHDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJR8</accession>
    <name>A0A392RJR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010234266">
        <property type="protein sequence ID" value="MCI36489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6693" checksum="A5A14B4B271AAD7B" modified="2018-12-05" version="1" fragment="single">NTRERKVTEREKLRQLTAAHGSARERCLTVVVAEVAGATTVVVYGDGSGFDEGGVVVCDLEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKT4</accession>
    <name>A0A392RKT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010236191">
        <property type="protein sequence ID" value="MCI36664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5542" checksum="478AE66FF2185A6F" modified="2018-12-05" version="1" fragment="single">MEGLQMEVGARYDSGFQFSIEQLKIVFPDLDELKLGELDALNRIVDGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUT0</accession>
    <name>A0A392RUT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010266560">
        <property type="protein sequence ID" value="MCI39355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10240" checksum="81B8CDDCA7698F64" modified="2018-12-05" version="1" fragment="single">MVVCVPTTIRCSNGSVFPSKVGRWGVLKPSGTRVSHRTCDRGWDSTISSSSSCSVALFSFFSLCGCHLSLEAAYLGNSRLQSPCEDILCFALDQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVB4</accession>
    <name>A0A392RVB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010274482">
        <property type="protein sequence ID" value="MCI39994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13573" checksum="EBB0CC2A31CDA5D0" modified="2018-12-05" version="1" fragment="single">GTTSKTVEEKVVEEKVDQKEDVVAEKAKKKDMKRKSSGIKFDEGRSKMRHDKRNKEDESSTESDEVPLAQKLKQETSEAYSKEMHKKFSSGKFSKSSDFISTEAQVPGFDIPLTTILPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWU8</accession>
    <name>A0A392RWU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010287981">
        <property type="protein sequence ID" value="MCI41111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033579">
        <property type="entry name" value="TMEM128"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31134">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31134:SF1">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20479">
        <property type="entry name" value="TMEM128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5412" checksum="AC04EE6A0927E51D" modified="2018-12-05" version="1" fragment="single">FSFALWPIWSFLTIPLLFTLFMACMVVIPYLIFGTLRPQSDELRTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RY54</accession>
    <name>A0A392RY54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010293456">
        <property type="protein sequence ID" value="MCI41538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RY54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5496" checksum="8E0D9CACCD234316" modified="2018-12-05" version="1" fragment="single">MINSSGCEDLYLNVFLEGTFSSESVSISGSGDASVSDVSVFAGSETSIGSEILI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1I2</accession>
    <name>A0A392S1I2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance-responsive dirigent domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301618">
        <property type="protein sequence ID" value="MCI42204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1I2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004265">
        <property type="entry name" value="Dirigent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46215:SF17">
        <property type="entry name" value="DIRIGENT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46215">
        <property type="entry name" value="DIRIGENT PROTEIN 24-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10852" checksum="641413170B5B6763" modified="2018-12-05" version="1" fragment="single">TNQLPFPKPLGFFPPNGGIPIPQSTQTQTLDLSTIGFSFPTRAALQELEFGSVTSIDEELLVEGEHEDELKRLGKAQGVYVASEEDGSSHMMAITVSFVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S2Y4</accession>
    <name>A0A392S2Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Plasma membrane ATPase 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010308234">
        <property type="protein sequence ID" value="MCI42737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S2Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00690">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00831">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="Cation-transporting P-type ATPase N-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI42737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9118" checksum="253D8077F93ABC5A" modified="2018-12-05" version="1" fragment="single">ERIPLEEVFQHLKCSRDGLTSEEGANRLQAFGPNKLEEIKDSKFLKFLGFMWNPLSWVMEVAAIMAIALANGGGKPPDWQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S7S4</accession>
    <name>A0A392S7S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transferase CAF17-like mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010334725">
        <property type="protein sequence ID" value="MCI44739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S7S4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005759">
        <property type="term" value="C:mitochondrial matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045179">
        <property type="entry name" value="YgfZ/GcvT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22602">
        <property type="entry name" value="TRANSFERASE CAF17, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22602:SF0">
        <property type="entry name" value="TRANSFERASE CAF17, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8726" checksum="22CD9C1C72686977" modified="2018-12-05" version="1" fragment="single">DVEEPEAASVGWGAGEDGAAMSSSRGGNLGWQWFKDPRLACLGFRGIFPSNIIPPLIEADKETDEQNYLMWRIEKGVAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9B2</accession>
    <name>A0A392S9B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">60S ribosomal protein L3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010345418">
        <property type="protein sequence ID" value="MCI45533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9B2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000079">
        <property type="entry name" value="60S ribosomal protein L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045077">
        <property type="entry name" value="L3_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_uL3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11363">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11363:SF5">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI45533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5782" checksum="18B81921650806F2" modified="2018-12-05" version="1" fragment="single">AFVGYKSGMTHIVREVEKPGSELHKKETCEAVTIIEAPLVVVVVGLVEYVKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9X3</accession>
    <name>A0A392S9X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010338089">
        <property type="protein sequence ID" value="MCI44984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6552" checksum="AE8383F9F4C7F116" modified="2018-12-05" version="1">MMSISMLDVAAIVGLNPYGETFHPERQSANPLKVNMSKNAYLSFMTNNKGQTDEISETE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFU4</accession>
    <name>A0A392SFU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010363406">
        <property type="protein sequence ID" value="MCI46830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11320" checksum="98CC575727DBA0D4" modified="2018-12-05" version="1" fragment="single">MSSLMAKELDLIEEFQDLSLVCEVTPRSVRLGMLKLTNPFLEEIKECQKRDRKLMEKMVLVNEGKETDFGVDGNGVMRYRGRVCVPDVPELKKMILEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFX9</accession>
    <name>A0A392SFX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GTP-binding ERG-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010371325">
        <property type="protein sequence ID" value="MCI47352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="12"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="23"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12009" checksum="CA9C7A4CE6FDD4FD" modified="2018-12-05" version="1" fragment="single">KPNPTTIFRAFFSAEPLTPEPDSQPSDSDSTFDSSHYDIPISNDPPKPTWDEKNRKRAEKSLFGDEVDSEVVKLKFKEEEDKRKRRALAKALLDAALNKEEEDDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SID2</accession>
    <name>A0A392SID2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010383125">
        <property type="protein sequence ID" value="MCI48207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SID2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9936" checksum="89FA9E3E6117BE53" modified="2018-12-05" version="1" fragment="single">MHVKFDDKEPDKVLELVEGFADLQVLEDKDLEPVSTSEPIKISELVVRSETSKDTTTSKASPVSEGEEADAEETLQPKNTFKYKSSHPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLN2</accession>
    <name>A0A392SLN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010396039">
        <property type="protein sequence ID" value="MCI49104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3627" checksum="AEA48C540CD851A9" modified="2018-12-05" version="1" fragment="single">ALDGFTRKKIGAHGLGERKVEFSYGLTGMEDNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SM28</accession>
    <name>A0A392SM28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010401713">
        <property type="protein sequence ID" value="MCI49472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SM28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7977" checksum="E64A2ADB09D0F073" modified="2018-12-05" version="1" fragment="single">KDTPLNGEMPKTVHLIQRDCHLPTRHMEAASLPMPSLNKHRQQVRIKERESYVGQPRQSCGLNSWFSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SM61</accession>
    <name>A0A392SM61_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010409468">
        <property type="protein sequence ID" value="MCI49971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SM61"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6382" checksum="7F12E0AC3F862068" modified="2018-12-05" version="1" fragment="single">TKGDSGVELKDGHNKPETLNGGAKGAKMKRTEAMTGVATAPDDAKGGSSSVDDVRVGDIVLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQH2</accession>
    <name>A0A392SQH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010427073">
        <property type="protein sequence ID" value="MCI51111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQH2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7847" checksum="30BE42F78B84A689" modified="2018-12-05" version="1" fragment="single">MTTSEKKKEDPTGKEKTVQKKVVVAVEGKKDKKRKSSGINIDEGRSKLKHDKRSKIDESSTESDEETLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STA1</accession>
    <name>A0A392STA1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010429695">
        <property type="protein sequence ID" value="MCI51285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STA1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7198" checksum="E5DC55E7712E93B1" modified="2018-12-05" version="1" fragment="single">MGGGLVLLFRNSGEDVGEPACKKDWWGELLTDLKTWSPNQVCSKREIWVSMYGVPLHAWGEATF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZD8</accession>
    <name>A0A392SZD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein FAR1-RELATED SEQUENCE 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010469912">
        <property type="protein sequence ID" value="MCI53852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47718">
        <property type="entry name" value="OS01G0519700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47718:SF17">
        <property type="entry name" value="PROTEIN FAR1-RELATED SEQUENCE 5-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MULE transposase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8665" checksum="F09EBA62EB0F7567" modified="2018-12-05" version="1" fragment="single">MQGKLTISVITDGDLAMRNAIRIVFPKAHHILCAWHLARNATCNVKNPRFTALFKKCILFDYEIVDFERKWNEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZH0</accession>
    <name>A0A392SZH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010476526">
        <property type="protein sequence ID" value="MCI54258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10078" checksum="A816CF95F835AFD4" modified="2018-12-05" version="1" fragment="single">PFKSSNVDSNVAASGTSEIVAFGNASETLGSDKPRTVKNLGKDDTNPSVDDTLAVEASTKANVNPTVDLVQKVGYETHADQDVTPSRQTSDKPEDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1W1</accession>
    <name>A0A392T1W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010484635">
        <property type="protein sequence ID" value="MCI54752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4123" checksum="DB32BA8DADF3AFD9" modified="2018-12-05" version="1" fragment="single">VMRTVRRGVIEPGVHRGDVTGTGKVRRRAFENEWSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4J8</accession>
    <name>A0A392T4J8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010505373">
        <property type="protein sequence ID" value="MCI56008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4J8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10623" checksum="9FD6ACF7A4F07775" modified="2018-12-05" version="1" fragment="single">TIYDPVHEPAKIWYTIELGMNVTHRANTTAFSGYRRRYSALFSFVSNNIFSDLQLKENLRERWVVVEDEDYWSLSLKKMKMKEGLMNLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6A9</accession>
    <name>A0A392T6A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010515465">
        <property type="protein sequence ID" value="MCI56631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9196" checksum="F740A7DA0CA1F68A" modified="2018-12-05" version="1" fragment="single">MLDPSTTNTKKEQPPPCCATEKDDAESHRRLSSHHCSVRLHRDGGFWKSVGEERCGFRVEEKRRRCGEVLEEAGSYGGFVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TC00</accession>
    <name>A0A392TC00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010549874">
        <property type="protein sequence ID" value="MCI58661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TC00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9609" checksum="B81DCC51CC51BD8C" modified="2018-12-05" version="1" fragment="single">CGKSKLDVASGNTIPQTKKSSGGVDASKVPHQNGTQAKPIGNNNVDNDVSKLEQKNHENVVVAPNEMITNVQQQDSALEKKNQEADVVEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJG9</accession>
    <name>A0A392TJG9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010597299">
        <property type="protein sequence ID" value="MCI61309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJG9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4781" checksum="BB488C1EC27AFE20" modified="2018-12-05" version="1" fragment="single">MKKFLPLPPLQKSWQESSIHVQEPSGGSVSKAEDEISTSPTSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMZ9</accession>
    <name>A0A392TMZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Leucine-rich repeat extensin-like protein 3</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010601002">
        <property type="protein sequence ID" value="MCI61506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7005" checksum="63E0D56A0F80F60B" modified="2018-12-05" version="1" fragment="single">MPQPPPHIPVCPQPMAVPIGVCCTSCYEGREGGPCFHGYGGPPLPPASCYDGYYGRPIYDSYGGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNT0</accession>
    <name>A0A392TNT0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mediator-associated protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GeBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010616448">
        <property type="protein sequence ID" value="MCI62294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNT0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053932">
        <property type="entry name" value="GeBP-like_DBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04504">
        <property type="entry name" value="GeBP-like_DBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glabrous enhancer-binding protein-like DBD" evidence="3">
        <location>
            <begin position="26"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="13"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI62294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8214" checksum="8E4D02645425AAFC" modified="2018-12-05" version="1" fragment="single">VSAAAGGSDEEKDDVRLTSEDSKKSFRRIFSEEDELAILKAVADFIPKTGKDPLKDIAAFHDFEIASCYGEYPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPY4</accession>
    <name>A0A392TPY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010619851">
        <property type="protein sequence ID" value="MCI62487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5620" checksum="9152EFFEC8029176" modified="2018-12-05" version="1">MSGFAERILKLAADNKASKKKVKGRTSALLSQSGPGSSSSPRGGQACSSEPKETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRN0</accession>
    <name>A0A392TRN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010644601">
        <property type="protein sequence ID" value="MCI63841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4061" checksum="7D5A531BB3E36436" modified="2018-12-05" version="1" fragment="single">KIAAEEKAKAEKVAAAAKKDKEVEGKKDDKKDQESSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYB9</accession>
    <name>A0A392TYB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIR-NBS-LRR RCT1 resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010665270">
        <property type="protein sequence ID" value="MCI64885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4976" checksum="441E527CA264722B" modified="2018-12-05" version="1" fragment="single">GDQDQQVPLSEGQPELQAAATSETIGPVLGAQILDALKELRADFARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZH3</accession>
    <name>A0A392TZH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679245">
        <property type="protein sequence ID" value="MCI65630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="7007" checksum="85AF405837D1E654" modified="2018-12-05" version="1" fragment="single">VRQPPPKRQREEPVIDVDALEKPYPLPRCFGSRDFMEKLLVLNDEQGSSTREVEKLKARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZV7</accession>
    <name>A0A392TZV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010700738">
        <property type="protein sequence ID" value="MCI66712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017459941" evidence="1">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3905" checksum="B8FCCEFF41D05515" modified="2018-12-05" version="1" fragment="single">MCGNLLFLQVIYVATIGDNDGVNSQSVCCIGLVAFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2U5</accession>
    <name>A0A392U2U5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694132">
        <property type="protein sequence ID" value="MCI66365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2U5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8853" checksum="21A3D80AB3E23268" modified="2018-12-05" version="1" fragment="single">LKNRACSPSEPTSEPAKCLPLSLAEARNFWFPVACCSLKPGTFRFLMVSVAFTRCSEELSDVPSLSFAFSRPATVSGFVNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U482</accession>
    <name>A0A392U482_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010733665">
        <property type="protein sequence ID" value="MCI68273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U482"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4474" checksum="675825AFCCE82558" modified="2018-12-05" version="1">MSPTLAKRKLASSSLILADARQLAKTYWTLLAERALASPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4A5</accession>
    <name>A0A392U4A5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010704268">
        <property type="protein sequence ID" value="MCI66875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4A5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7895" checksum="39265CD9D520F4D0" modified="2018-12-05" version="1" fragment="single">MKSDDLSSDLMICSSYDDLVVAGTLSSTESDNLSSDLVICSYYDDHVVAGTLPSTESDDLSSNLVICSYYDDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U598</accession>
    <name>A0A392U598_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010719779">
        <property type="protein sequence ID" value="MCI67576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U598"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4277" checksum="47E08685BD54E5A1" modified="2018-12-05" version="1" fragment="single">VALNCVGVDCFILGSCSVTLVLDSGCFSTTALVVVPMLSSRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7U0</accession>
    <name>A0A392U7U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010736851">
        <property type="protein sequence ID" value="MCI68456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6699" checksum="BF2F78C80965483F" modified="2018-12-05" version="1" fragment="single">IRVTQGVLGMKLFRWHTGIGRKECKVCVYSVRALVGSDARYTVMSMADELPKKANMEVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9S8</accession>
    <name>A0A392U9S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010759409">
        <property type="protein sequence ID" value="MCI69587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7195" checksum="B1DB8E28E4734D6A" modified="2018-12-05" version="1" fragment="single">MGDVNQPRRTMEDYCKRTDADQISLGFVLANPVNFDIKGNVLTGLRENQFDGRANKDPWDHLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCX3</accession>
    <name>A0A392UCX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010778224">
        <property type="protein sequence ID" value="MCI70554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF486">
        <property type="entry name" value="RLK (RECEPTOR-LIKE KINASE) PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6493" checksum="38F97C00F898919A" modified="2018-12-05" version="1" fragment="single">GMMYSHCESTTLVGYCDADWEDSADDRKSTSGGCYFLGNNLISWFNKKQNSVSLSTAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKB7</accession>
    <name>A0A392UKB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010852923">
        <property type="protein sequence ID" value="MCI74079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2700" checksum="913C1B40720294E9" modified="2018-12-05" version="1" fragment="single">MANVICGFKGSSDYDTGDHKKVVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UKT9</accession>
    <name>A0A392UKT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010856640">
        <property type="protein sequence ID" value="MCI74249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UKT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3618" checksum="EFF961F31515E884" modified="2018-12-05" version="1" fragment="single">EKTGKLGFPQTAPLIFLDQKSDRVQRCSDNAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULJ2</accession>
    <name>A0A392ULJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010835828">
        <property type="protein sequence ID" value="MCI73316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046:SF18">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35046">
        <property type="entry name" value="ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8153" checksum="598779BBD39FB349" modified="2018-12-05" version="1" fragment="single">DRLTKSAHFIAIKTGMLVPKFAEIYVDQIVRLHGIPSSIVSDRDPRFTLRFWESLQEVLGTKLRLSSAYHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UP66</accession>
    <name>A0A392UP66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010856296">
        <property type="protein sequence ID" value="MCI74236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UP66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4490" checksum="CD3CEAF5A0E2AC4E" modified="2018-12-05" version="1" fragment="single">TMAARTNAQIAEALATMAGIMARDHQPGREDETRLERFMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0S3</accession>
    <name>A0A392V0S3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011000836">
        <property type="protein sequence ID" value="MCI80681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0S3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6734" checksum="950B43E95ACD00E7" modified="2018-12-05" version="1" fragment="single">MNFDSLIVASDFEYPTVAVWDTRVEAHPIRELQLGVSLAQTDLFNAKATCVQYSEVSNDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V170</accession>
    <name>A0A392V170_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011029625">
        <property type="protein sequence ID" value="MCI81867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V170"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6500" checksum="4FE75AC858BDA63B" modified="2018-12-05" version="1">MLHNQHEMQGYYNRWESAEAHRQHQLHRIVQELGDLRLQFDDFQQHQQPPYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9W1</accession>
    <name>A0A392V9W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011086137">
        <property type="protein sequence ID" value="MCI84242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7345" checksum="2356353C40010CE3" modified="2018-12-05" version="1" fragment="single">MILDASAGGSIKNKTQAATKELVEEMCQNEYNMSQEKVTKAGGKFEVDREIALKVEIELLKKQLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBA4</accession>
    <name>A0A392VBA4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011085134">
        <property type="protein sequence ID" value="MCI84201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBA4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3959" checksum="7005CEAFEC4FED12" modified="2018-12-05" version="1" fragment="single">MLKPLQLPPDYDFHDHNVCIAEELGFDYGVPIPAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VED2</accession>
    <name>A0A392VED2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011148483">
        <property type="protein sequence ID" value="MCI86744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VED2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6789" checksum="B7279144B58DC51B" modified="2018-12-05" version="1" fragment="single">MEVAGVMAGLEDGNPGGPRRVRRPWISSDTWSWNDYWETMRLLMEAARSSMEGGEAMINE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEN0</accession>
    <name>A0A392VEN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011150938">
        <property type="protein sequence ID" value="MCI86838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5464" checksum="646FF154AA0E0418" modified="2018-12-05" version="1" fragment="single">RGKPYGDKGKKGVESSGGRKNVVEIALSVVKWDISLMSSQRRKTSVSNVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIP5</accession>
    <name>A0A392VIP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011135473">
        <property type="protein sequence ID" value="MCI86260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="49"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6900" checksum="9A5BBD916DF8C211" modified="2018-12-05" version="1" fragment="single">MAARVPPDLSNKMTKLTVNPDHSRCTVGEKDWVDMTRLQQRSRFGVTKSSAASSSSHPAARTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIQ5</accession>
    <name>A0A392VIQ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011163819">
        <property type="protein sequence ID" value="MCI87353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIQ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4555" checksum="098E7FF88B5E1F11" modified="2018-12-05" version="1" fragment="single">HVDNLIKSMTKEQDEEGYKAEEGEGEKEEDTGNDETNPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJ10</accession>
    <name>A0A392VJ10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011163593">
        <property type="protein sequence ID" value="MCI87349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJ10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4059" checksum="7FEEE1A86A0C756C" modified="2018-12-05" version="1" fragment="single">TVITPTRNNQEEIPANDAGDPRDGEEASPFTEDEDEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMC1</accession>
    <name>A0A392VMC1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011178280">
        <property type="protein sequence ID" value="MCI87895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2231" checksum="D517A111E9EF9405" modified="2018-12-05" version="1" fragment="single">MDEDGNYGGIGSRSDRNECR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPC4</accession>
    <name>A0A392VPC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011226514">
        <property type="protein sequence ID" value="MCI89727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7336" checksum="4B56A161F6E9C3F6" modified="2018-12-05" version="1" fragment="single">MVSHPRVCRPVDGPHGAPLVPQYVPAQQDDPMEEDAPAADAPPAAQQGDRRWHVAASALERFIVQVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPG1</accession>
    <name>A0A392VPG1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011189689">
        <property type="protein sequence ID" value="MCI88310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="44" mass="5088" checksum="6E7DBC97E5E182FA" modified="2018-12-05" version="1" fragment="single">MIGFSQIRDFATFVNKSRICDEDGRAKVNYYKVVNDRKGKGQEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6H4</accession>
    <name>A0A392W6H4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011408945">
        <property type="protein sequence ID" value="MCI96234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6H4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2415" checksum="5B83919629E53E50" modified="2018-12-05" version="1" fragment="single">MMRTLFLHLLLLIDGKNLAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8U0</accession>
    <name>A0A392W8U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407990">
        <property type="protein sequence ID" value="MCI96193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3874" checksum="5B2D8B0C992718FF" modified="2018-12-05" version="1" fragment="single">MVVWSIEVLKVVGGTDPDDLPFVQRMAERELVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9R0</accession>
    <name>A0A392W9R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011417268">
        <property type="protein sequence ID" value="MCI96533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9R0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4738" checksum="28CA60E9CEE45954" modified="2018-12-05" version="1" fragment="single">MCSRTSSGRSLILSSSVIERPSRRDILVVIRKGRMTTGDNTNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WDW2</accession>
    <name>A0A392WDW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011467435">
        <property type="protein sequence ID" value="MCI98226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WDW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI98226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5353" checksum="B901766274A71EB8" modified="2018-12-05" version="1" fragment="single">MGQKSLFTLNPARCAALPARYACNRTGQAELAEAWRLAPRPGALRPQQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1B2</accession>
    <name>A0A392N1B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histone-lysine N-methyltransferase CLF-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023893">
        <property type="protein sequence ID" value="MCH92975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046976">
        <property type="term" value="F:histone H3K27 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031507">
        <property type="term" value="P:heterochromatin formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045318">
        <property type="entry name" value="EZH1/2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45747:SF4">
        <property type="entry name" value="HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="93"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="109"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH92975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="28699" checksum="F7AF34B5E49B0149" modified="2018-12-05" version="1" fragment="single">NAGEDSKNGDTQDNFQIDNSFLEKDLEAALDSFDNLFCRRCRVFDCRLHGCSQDLVFPAERQPSWSPPNTENAPCGPNCFRLALAEKMAKAASSTQTDVEDKSSGSALSRKKSSGRRRVKCTQSENASSNAKNISESSDSENGPGRDAVSASHSAPPKTKLVGKSGIGKRNSKRVAERVLVCMQKRQKKTAASDSDXISEAPDRSLNDMVTDSHVMIGEDNMRKEEFVDENICKQELTDNKSWKALEKGLLEKGMEIFGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKA7</accession>
    <name>A0A392NKA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041482">
        <property type="protein sequence ID" value="MCH99841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8306" checksum="8E7D528B5C3F35BA" modified="2018-12-05" version="1" fragment="single">KSDRVRRCSDNAAVEVEGGCVSAGTPTLNPQRWAKALDGINGHQVAAGKRLKSYDEQLMLIIPVVGRYSTRGYCDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NML6</accession>
    <name>A0A392NML6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">BCNT-C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043000">
        <property type="protein sequence ID" value="MCI00369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NML6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011421">
        <property type="entry name" value="BCNT-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027124">
        <property type="entry name" value="Swc5/CFDP1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48407">
        <property type="entry name" value="CRANIOFACIAL DEVELOPMENT PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48407:SF1">
        <property type="entry name" value="CRANIOFACIAL DEVELOPMENT PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07572">
        <property type="entry name" value="BCNT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51279">
        <property type="entry name" value="BCNT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BCNT-C" evidence="2">
        <location>
            <begin position="91"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="13679" checksum="D44BEC0F24154E56" modified="2018-12-05" version="1" fragment="single">MSYLGLAPKATESPGQCAPQNGPDVPENSTSDEGKKLAAAALAAVKDDAAASASSRGKLVITEVRDFAGQEIEYKKLVDSDSKEAMERAKAPAPSAVDAVLEQIKKKSKLSVLDKTKKDWGEFKEENKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT88</accession>
    <name>A0A392NT88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051132">
        <property type="protein sequence ID" value="MCI03078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4448" checksum="A3DC2760EC40A0DA" modified="2018-12-05" version="1">MRCPVLVRIDAVWGGILCNVLRDDSAEVIWECPRESDCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NV46</accession>
    <name>A0A392NV46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pyrrolidone-carboxylate peptidase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051791">
        <property type="protein sequence ID" value="MCI03312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NV46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.20">
        <property type="entry name" value="Peptidase C15, pyroglutamyl peptidase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016125">
        <property type="entry name" value="Peptidase_C15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036440">
        <property type="entry name" value="Peptidase_C15-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402:SF26">
        <property type="entry name" value="PEPTIDASE C15, PYROGLUTAMYL PEPTIDASE I-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402">
        <property type="entry name" value="PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53182">
        <property type="entry name" value="Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI03312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="9954" checksum="4EC3905DE7827E9C" modified="2018-12-05" version="1" fragment="single">IQNSEMGSEGPKAITIHVTGFKKFQGVPINPTEFIVNNLKDYVEKKGLPAGVTLGSCTVLEVAGDGALPQLHQTMESVVSKTDANSNANVVWVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P055</accession>
    <name>A0A392P055_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Scarecrow-like protein 32-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058579">
        <property type="protein sequence ID" value="MCI05407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P055"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="VHIID" evidence="5">
        <location>
            <begin position="90"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="region of interest" description="Leucine repeat II (LRII)" evidence="5">
        <location>
            <begin position="177"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="VHIID" evidence="5">
        <location>
            <begin position="121"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI05407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="286" mass="31844" checksum="E373DDA0D4329FF4" modified="2018-12-05" version="1" fragment="single">MEQLLVHCANAIETNNATLAQRILWVLNNTTPQDGDSNQRLAGSFIRALVNRASKTGSCKMLEAVTETASSYNNRNNFAMQIHKFSVIELADFVDLTPWHRFGFTAANSTIVEATKGFSVIHIVDLSLTHCMQIPTLIDAIANRDEVPPLIKLTVADCRNMNIHIPIPPLLDLSYDELGAKLVNFAKSKNVIMEFKAVSSTYADGFASLIEHLRVQVQHYTKTHEALVINCHMMLHYIPDETLNDTNMNSNSSSSLRSMFLEALRSLDPTIVVLVDEDAELTSNDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P163</accession>
    <name>A0A392P163_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059608">
        <property type="protein sequence ID" value="MCI05748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P163"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43939:SF68">
        <property type="entry name" value="CENTROSOMAL PROTEIN OF 290 KDA-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43939">
        <property type="entry name" value="COILED-COIL DOMAIN-CONTAINING PROTEIN 158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="81"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="295" mass="33117" checksum="C82690EEA756392C" modified="2018-12-05" version="1" fragment="single">KDEINRLSSDLESIPKLEADLLEIKSEKNQFEQFLLESNNMLQRVMECIDGIVLPVDPVFGEPIEKVKWLAGYVSECQDAKVHVEQQLQVVKEEASILEAKLAEAQETVNSHGQRLSTSEGSVSQLAEEKAELEHEKEKVVEELQKVKEKVAEACSTSKSLEDALSQAEKDISVLSEEKEQAQVSRVDAETELERVRDEAVKQTRELEEARRTIKDLEVELSQVESKVNLLTEKYNAEQDVKTELESELKKLQDEAENNASKLVGSSATIKSLEDALLKAQDDISILEDANKIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P791</accession>
    <name>A0A392P791_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ty-3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062901">
        <property type="protein sequence ID" value="MCI06745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="3">
        <location>
            <begin position="107"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="2">
        <location>
            <begin position="187"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="63"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI06745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="245" mass="28857" checksum="6CC0D7F17A276113" modified="2018-12-05" version="1" fragment="single">RCLETYLRCFITDQPKSWVQWLPWAEFWFNTTFHASTKSTPFELVYGRKPPMITRLLQGETRVEAVQKELEERDEALKQLKNHLMRAQERMKHFADEKRSDRSFQVGEWVFLKLRPHRQSSVATRIYAKLAARYYGPFQVMERIGAVAYLSLIXVFHVSLLKKAIGDYHVEKELPPGMEEDCDALFMPESVIAIRMKDREGQQVQQVLIKWTNRTIDEATWEDMVTIKNQFPEYNLEDKVSLLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8B0</accession>
    <name>A0A392P8B0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067510">
        <property type="protein sequence ID" value="MCI08024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8B0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13921">
        <property type="entry name" value="Myb_DNA-bind_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="24286" checksum="D654FFA7AD8D4771" modified="2018-12-05" version="1" fragment="single">MAIDDDVATSLDFVSPSSTIHKKRKKSKLTTDGEEEKRFKKSKKYKRDPHDIYDSDLDSNSLDMQQDDHAESDPCKSLVVLEQKTVGRSKMGGKVSITPMPVKRVFMIKSEKLKKGNIWYKDCIPSADFWLTQEDAVLCAVVHEYGPNWSFVSEILHNMTAGGAYRGIYRHPVHCCERFRELFQKYVLFSMDNANHEKINNTCSGKVLKVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PB38</accession>
    <name>A0A392PB38_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kinesin-like protein KIN12B-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069938">
        <property type="protein sequence ID" value="MCI08689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PB38"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="100"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="142" mass="15944" checksum="598C73BEAF6DF69E" modified="2018-12-05" version="1" fragment="single">MRGNAMQTAEVEANRSLAEKRKRELDAERKCSKELKDALQIAIEDRARILEQYADLEEKHVQLLERHRKIHDGIDVKNATSEAGVRSAESKLIHTPAAEISALKDENRGLQYQLKDTSEEVQAAGELLVRLKEAEEGVATAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PB63</accession>
    <name>A0A392PB63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072488">
        <property type="protein sequence ID" value="MCI09391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PB63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8030" checksum="501F66046D6CB1CE" modified="2018-12-05" version="1">MAEAIGIFDKMLAVCCAPDEITINNLRSCLLKAGMPAEAARVKEALCQNHNSSTSLKKKSYRESTNADIPIAVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGM9</accession>
    <name>A0A392PGM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077608">
        <property type="protein sequence ID" value="MCI10787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14485" checksum="C3AEBF8ECC83FFF7" modified="2018-12-05" version="1" fragment="single">TSGDIKVAIVVKLGSSIHKKISWLWYCGLAYLSKGAESMYVTMVFYGYGCYGYDSQRRMRAEKQWDPGGHVKMCPKVIFSSFKLWDQGKFVSAIKFYNLQDKVGLEGXDIVMXKPNSNCEXQDSNIXA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PM49</accession>
    <name>A0A392PM49_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Regulatory protein recX-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085857">
        <property type="protein sequence ID" value="MCI12852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PM49"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8047" checksum="FA95158E26E905A5" modified="2018-12-05" version="1" fragment="single">MKIPHLEYCSFADGSVIKIDDGKIGHASIAHYETSRNPDEVHNELLFDDSEEGSEQMEEVGELTGDSCEQDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMH1</accession>
    <name>A0A392PMH1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">O-fucosyltransferase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycosyltransferase GT106 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085127">
        <property type="protein sequence ID" value="MCI12679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMH1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019378">
        <property type="entry name" value="GDP-Fuc_O-FucTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741:SF67">
        <property type="entry name" value="O-FUCOSYLTRANSFERASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31741">
        <property type="entry name" value="OS02G0726500 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10250">
        <property type="entry name" value="O-FucT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="11" id="KW-0294">Fucose metabolism</keyword>
    <keyword evidence="10" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI12679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18748" checksum="1D20CB9E5EA80AC9" modified="2018-12-05" version="1">MRSFGPYIALHLRYEKDMLAFSGCTHGLSTSEAEELRIIRESTSYWKRKHIDPNEERSKGFCPLTPKEVGIFLSALGYPRKTPIYIAAGEIYGGESHMTELLSRYPFLMSKLEPFSNHATQMAALDYIVSVESDVFVHSYPGNMARAVEGHRRFLGRGRTISPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR60</accession>
    <name>A0A392PR60_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GPI ethanolamine phosphate transferase 1</fullName>
            <ecNumber evidence="1">2.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis. Transfers ethanolamine phosphate to the first alpha-1,4-linked mannose of the glycosylphosphatidylinositol precursor of GPI-anchor.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Glycolipid biosynthesis; glycosylphosphatidylinositol-anchor biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PIGG/PIGN/PIGO family. PIGN subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.-.-.-" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010092951">
        <property type="protein sequence ID" value="MCI14578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR60"/>
    <dbReference type="UniPathway" id="UPA00196"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051377">
        <property type="term" value="F:mannose-ethanolamine phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007070">
        <property type="entry name" value="GPI_EtnP_transferase_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12250:SF0">
        <property type="entry name" value="GPI ETHANOLAMINE PHOSPHATE TRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12250">
        <property type="entry name" value="PHOSPHATIDYLINOSITOL GLYCAN, CLASS N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="1" id="KW-0337">GPI-anchor biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10628" checksum="1BC80674804C5FD6" modified="2018-12-05" version="1" fragment="single">MPISSSNHSDCGFRFVDDHVHDSPTPIEWGLHGIERVDVNQADIAPLMVSTLLGLPCPVNSVGILPRDYINMTKAEEVEAVLSNTKEILNQFLRKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUG4</accession>
    <name>A0A392PUG4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lysine-specific histone demethylase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097735">
        <property type="protein sequence ID" value="MCI15733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUG4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053342">
        <property type="entry name" value="Exosome_cofactor/PTGS_suppr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37260">
        <property type="entry name" value="PHOSPHORELAY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37260:SF2">
        <property type="entry name" value="PROTEIN ECERIFERUM 16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10202" checksum="880E98B46C41D086" modified="2018-12-05" version="1" fragment="single">MSKELNLVDSAADQFTSSSCCSSSHAASTSALSDDFLIPVSNINAEFQQVGSSGKNEAFQPSAETNLHFIEDTVVKHSTFEAAAAEKDLDMLLDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYG3</accession>
    <name>A0A392PYG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102313">
        <property type="protein sequence ID" value="MCI16757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14424" checksum="552A8E482FBD4FD4" modified="2018-12-05" version="1" fragment="single">ADGLRVEVVQPVHQAVFSHFSSHFRASNTARPTVDDLHFRTLSFVEGGSLVKPFSVEEVRAAVWDCDSYKSPGPDGINFGFLKEFWLEMRDDIMRFITEFHRNGKLTKEINSTFIALIPKDFTGMAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0X8</accession>
    <name>A0A392Q0X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ABC transporter-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. ADCK protein kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105164">
        <property type="protein sequence ID" value="MCI17370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046467">
        <property type="term" value="P:membrane lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901031">
        <property type="term" value="P:regulation of response to reactive oxygen species"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050154">
        <property type="entry name" value="UbiB_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10566">
        <property type="entry name" value="CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10566:SF115">
        <property type="entry name" value="PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 8, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC1 atypical kinase-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI17370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8712" checksum="1686AE45BF0E7F01" modified="2018-12-05" version="1" fragment="single">HPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDPDKVLQSMIQMGVLVPTGDMTAVRRTAQFFLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3X2</accession>
    <name>A0A392Q3X2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112868">
        <property type="protein sequence ID" value="MCI19021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3X2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2645" checksum="FCE3102A30D89488" modified="2018-12-05" version="1" fragment="single">VNRLTGARTRQELMIEAELDLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4W2</accession>
    <name>A0A392Q4W2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acyl-coA oxidase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114784">
        <property type="protein sequence ID" value="MCI19433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4W2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003997">
        <property type="term" value="F:acyl-CoA oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005504">
        <property type="term" value="F:fatty acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033540">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA oxidase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055088">
        <property type="term" value="P:lipid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012258">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909:SF352">
        <property type="entry name" value="ACYL-COENZYME A OXIDASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909">
        <property type="entry name" value="ELECTRON TRANSPORT OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="17639" checksum="C4E93F467AC3BE96" modified="2018-12-05" version="1" fragment="single">RRTEILTNHLRHDPPTATTILQQNGCLCYSPPELSESNSVTFDVREMRRLLDGHNLEERDWLFGLIIQSGLFNRREVDGRVFVSPDYNQSMEQQREMTMKRIAYLLDRGVFRGWLTGDGPQEELRKLALHEVIGMYDHSLAVKLGVHIFLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8U2</accession>
    <name>A0A392Q8U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chaperone protein clpB</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119236">
        <property type="protein sequence ID" value="MCI20307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="entry name" value="Clp, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051650">
        <property type="entry name" value="SL_signaling_regulator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572">
        <property type="entry name" value="CHAPERONE PROTEIN CLPD, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43572:SF49">
        <property type="entry name" value="PROTEIN SMAX1-LIKE 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="Double Clp-N motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="2">
        <location>
            <begin position="8"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="201" mass="22253" checksum="B99CADCCA2CB0199" modified="2018-12-05" version="1" fragment="single">MPTPVTAARQCLTPEAGKALDEAVTVAKRRGHAQTTSLHAVSALLSLPSSSILRDACCRSRNSAYSPRLQFKALDLCLSVSLDRAPSSHNNVSSDQEPPVSNSFMAAIKRSQANQRRHPDNFHFYHQQQQQQQQLQNQQTFSVSAVKVELQHLVLSILDDPVVSRVFAEAGFRSSEIKIAILRPLPNLFRSRGPPVFLCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8V9</accession>
    <name>A0A392Q8V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">U-box domain-containing protein 44-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119348">
        <property type="protein sequence ID" value="MCI20332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052608">
        <property type="entry name" value="U-box_domain_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958">
        <property type="entry name" value="RING-TYPE E3 UBIQUITIN TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45958:SF6">
        <property type="entry name" value="U-BOX DOMAIN-CONTAINING PROTEIN 43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="164" mass="17147" checksum="EB7561B61C6F9D44" modified="2018-12-05" version="1" fragment="single">PPETKLSMAGILGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASIMNSGEDFDSIPLGSDHQTLVSEDIVHKLLHLISNTGPAIECNLLQVLVGLASSPTTVLSLVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9T4</accession>
    <name>A0A392Q9T4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">LL-diaminopimelate aminotransferase chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123532">
        <property type="protein sequence ID" value="MCI21153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9T4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019942">
        <property type="entry name" value="DapL/ALD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43144">
        <property type="entry name" value="AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI21153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8224" checksum="E1826C9C52BE5C1F" modified="2018-12-05" version="1" fragment="single">YGGKNAPYVWVRFPGSKSWDVFAGILENTHIITIPGSGFGPGGEGYIRLSAFGQRDSIIEASERLKYLLYQEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAG6</accession>
    <name>A0A392QAG6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LRR receptor-like serine/threonine-protein kinase ERECTA-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121961">
        <property type="protein sequence ID" value="MCI20847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000383">
        <property type="entry name" value="Leucine-rich repeat receptor protein kinase EMS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051716">
        <property type="entry name" value="Plant_RL_S/T_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053">
        <property type="entry name" value="LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48053:SF120">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="5 6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI20847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8371" checksum="DFD853D696FAE6C4" modified="2018-12-05" version="1" fragment="single">MSKLHYLELNDNLLSGHIPPELGKLTDLFDLNVANNXLVGPIPGNLSSCTNLNSLNVHGNKLNGTIPATFQSLESMTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBA2</accession>
    <name>A0A392QBA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Blue copper protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123575">
        <property type="protein sequence ID" value="MCI21162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039391">
        <property type="entry name" value="Phytocyanin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003245">
        <property type="entry name" value="Phytocyanin_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021">
        <property type="entry name" value="BLUE COPPER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33021:SF70">
        <property type="entry name" value="PHYTOCYANIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02298">
        <property type="entry name" value="Cu_bind_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51485">
        <property type="entry name" value="PHYTOCYANIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phytocyanin" evidence="2">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="84"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI21162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10734" checksum="DB7DE6D06CC3FB23" modified="2018-12-05" version="1" fragment="single">FQYSSTFSVDEVTKENFDTCNTTKVLANYGNGNTTVPLTKAGDKYFVCGNKLYCLGGMKLHVHVDDDGKSISPSVAPKAVAGSDQRTATLPESPKKNLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDP8</accession>
    <name>A0A392QDP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010129634">
        <property type="protein sequence ID" value="MCI22278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7328" checksum="162CD67B02A9A791" modified="2018-12-05" version="1" fragment="single">LGEEDNSHLRVGLHQLGRGFTYGDFKEQVSHLLVCPSSSTPGVDMGMKPALAVASDADEYARGFYLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJ17</accession>
    <name>A0A392QJ17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">G-type lectin S-receptor-like serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010137473">
        <property type="protein sequence ID" value="MCI23710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJ17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0430">Lectin</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5346" checksum="D90606BFD250455D" modified="2018-12-05" version="1" fragment="single">VRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELGEGALVIRSSGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLU0</accession>
    <name>A0A392QLU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010140469">
        <property type="protein sequence ID" value="MCI24255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017451179" evidence="1">
        <location>
            <begin position="17"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6564" checksum="7AE22A693ACD8155" modified="2018-12-05" version="1" fragment="single">KSGFTLFLACRVGVVAQGAVCRKFGCELLDSARRAVCLAQCAVRLYICIFVHSSAAIGERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMP0</accession>
    <name>A0A392QMP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">4-coumarate-CoA ligase-like 9</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010144351">
        <property type="protein sequence ID" value="MCI24930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="118"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="71"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="97"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI24930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15134" checksum="1D2FCE18887B9A38" modified="2018-12-05" version="1" fragment="single">QEGSDLQQHINVFQNILTDLTRLRVQMDDEDKGFILLCSLPGSYDHLVTTLTYGKDSITLTSITSALLSXGQRRQNAEGGSHGEGLYVXGGSDRGRNKGKAGSGKKRSKSKNRKIAECYSCKQIGHWKRDCPNRKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QP81</accession>
    <name>A0A392QP81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151845">
        <property type="protein sequence ID" value="MCI26203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QP81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="116"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="179" mass="20322" checksum="58CBA659DEFD0327" modified="2018-12-05" version="1" fragment="single">VARYLSANRLVVTMRNGETEYVSLASIEVTSGVLVEEVCVVQLFQDIFRSENPGFPPIREVEFFIDLNPGTRPISESPYRMAPAELVELKSQIEDLLGKGFIRPSVSPWGAPVLLVKKKDGKSRLCVDYRKLNNATIKNRYPLPRIDNLIDQLKDASVYSKIDLKSGYHQIRVRDEDIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPE5</accession>
    <name>A0A392QPE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010147673">
        <property type="protein sequence ID" value="MCI25520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2343" checksum="99BDF02CFBABFBFD" modified="2018-12-05" version="1" fragment="single">AEVLKFRGSEVSYPLRQYSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQG2</accession>
    <name>A0A392QQG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154390">
        <property type="protein sequence ID" value="MCI26621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10344" checksum="344B59328C4B5CFD" modified="2018-12-05" version="1" fragment="single">MPLTAGTKSRTVPKFYAPLVGAMLLTLVALTAAVPTLDSKDLRSYFCPSLRFYSVLTTRPPWSASVLNRNTLPTIYNTELYGLSTQWFQRKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSU5</accession>
    <name>A0A392QSU5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154276">
        <property type="protein sequence ID" value="MCI26596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF6">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="81"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI26596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20247" checksum="6895E973371B39E8" modified="2018-12-05" version="1" fragment="single">METQSLAISEMSKQLGKQKSAPDSEGSVGGSSYNESRLAGKKVKLPVFEGDDPVAWITRAEIYFDVQNTPDEMRVKLSRXSMEGSTIHWFNLLLETEDDLSWEKLKKALIARYGGRRLENPFEELSTLRQTGSVEDFVEAFELLSSQVGRLPEEQYLGYFMSGLKPQIRRRVRTLNPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVE8</accession>
    <name>A0A392QVE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010165093">
        <property type="protein sequence ID" value="MCI28341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15774" checksum="BC5D8305751B721F" modified="2018-12-05" version="1" fragment="single">MFHSEVEFRFPVTYLVYGASSHVKEGSESQLKIYRLGLEQAKKKDDEKMVDEFKKRIQPLEEAALRKLKKSKRKMKGRMNMEKQEKEEVQTPVKDVELQNVVDVTVPEHSVLEEKKEEVQTPVKDVELQNVVDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYY5</accession>
    <name>A0A392QYY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010171208">
        <property type="protein sequence ID" value="MCI29237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYY5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF454">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13456" checksum="8F9F958BD7E5FF19" modified="2018-12-05" version="1" fragment="single">MLDSKPASTPSDPSAKVHQDSSTPYPDIPSYRRLVGRLLYLNATRPNITFSTQQLSQFMSKPTMAHFKAATRVLRYLKTCPGRGIMFPRDSNMHLQGFSDADWAGCLDSRRSISGQCFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAS4</accession>
    <name>A0A392RAS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MutS2 protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010203765">
        <property type="protein sequence ID" value="MCI33359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002625">
        <property type="entry name" value="Smr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036063">
        <property type="entry name" value="Smr_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01713">
        <property type="entry name" value="Smr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00463">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160443">
        <property type="entry name" value="SMR domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50828">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Smr" evidence="2">
        <location>
            <begin position="33"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI33359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11294" checksum="063BADC50D8982C1" modified="2018-12-05" version="1" fragment="single">SPPSGESQGNLEINSSNNDLSYGPLVQTSKNTVDLRGMRLAEAAIHLEMAINASRPYSVLFVIHGMGTGAVKDRALAIMEKHPRVTNYEPESPMNYGCTLAYVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REW5</accession>
    <name>A0A392REW5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217140">
        <property type="protein sequence ID" value="MCI34789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REW5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="24"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15279" checksum="62B11C51F3D2D917" modified="2018-12-05" version="1" fragment="single">RAVEKEVKGSSGVGYGHNRGSRQGNGPHRNGPGRNGSDWAMIKNKEGSSGGGVRSGSGGFRNDKQAQGERRRNGPRDRGFTHLSYNELMDRKQKGLCFKCGGPFHPMHQCPEKQLKVLVVDEEDEDEEGMKVLAVEVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RG83</accession>
    <name>A0A392RG83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010225315">
        <property type="protein sequence ID" value="MCI35628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RG83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="14053" checksum="F01A3E41FAC7B7CE" modified="2018-12-05" version="1" fragment="single">FAERMRTITNEQRLQFLAKARQKKSAPEAVVTDPLSQLAVEDEAAKGGKRKRKAETGRVTVPIPNKGEVSTAGCGVKEVQPSPKKHKGLPAPKWSTMGLLSGPNAPSGILGGGDKDAPAAGDDLGVIQPSSSQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RH73</accession>
    <name>A0A392RH73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010222922">
        <property type="protein sequence ID" value="MCI35394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RH73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="11"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10366" checksum="01E5DB7C7375FFBF" modified="2018-12-05" version="1" fragment="single">MMSDSDIPTRSGGSSIPAVSSSTSKLSTDLGVTPEVFKQMHETKPDEVLAMLLQERGSSSSTASGSSASVKAKHNALIYKFALEFIQEDAFAKLDANP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RLM8</accession>
    <name>A0A392RLM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010241752">
        <property type="protein sequence ID" value="MCI37187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RLM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14795" checksum="F3E9E6EB0E87918C" modified="2018-12-05" version="1" fragment="single">PADVRNRKVIEFMELKQGNLFVADYAAKFESLCRFSPHYNIVEAEYDKCVKFESRLRHDIKQLIGFSEICDFATLVNKSRICDVDGRAKASYFKAVNEKRRKDYGKGKPYDKKGKKGEGSSGKEKNDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RP91</accession>
    <name>A0A392RP91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010255888">
        <property type="protein sequence ID" value="MCI38433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RP91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11606" checksum="2A4808CDBF49B2C6" modified="2018-12-05" version="1" fragment="single">MDKIQNGDMDELMVFQKNTREWVEGVNREFGSAQLRKEGRLLSDDFFEETTVTNQVWKENLGLLDSELSMHMKFSLEPKTLFVKKDVFEQFEFDSFKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSJ4</accession>
    <name>A0A392RSJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010257099">
        <property type="protein sequence ID" value="MCI38555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10219" checksum="00C99F238E69C675" modified="2018-12-05" version="1">MQADAKEHVKKCDKCQRHGDMHLASPSKLRSLSSPWPFAWWGMDILGSFPTASGQNKYLIVAVEYFTKWIEAEPRTKISLSTYSPDSESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXR0</accession>
    <name>A0A392RXR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010281177">
        <property type="protein sequence ID" value="MCI40570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8511" checksum="0BD252936614E25D" modified="2018-12-05" version="1" fragment="single">HRVTLAPVSHGRKMKLLDLEVPNEEWFRERLTVTGLADLAKSGYQHLDPALISAFAERWHDETSSFHMPAGEITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3K0</accession>
    <name>A0A392S3K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010312051">
        <property type="protein sequence ID" value="MCI43012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4152" checksum="839D69C8B830DA23" modified="2018-12-05" version="1" fragment="single">MQCATLGGPGQASSDNNAVFLGCFTVDLGIIIAFHAELIGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S489</accession>
    <name>A0A392S489_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010314110">
        <property type="protein sequence ID" value="MCI43197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S489"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF524">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, PROTEIN KINASE RLK-PELLE-DLSV FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7713" checksum="C12A51771EE9555F" modified="2018-12-05" version="1" fragment="single">MASCKPSATPVDTKQKLSTSSGTPFEDPSLYRSLAGALQFLTITRHDILYAVQQVCLHMHAPRTEHMLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S912</accession>
    <name>A0A392S912_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010329916">
        <property type="protein sequence ID" value="MCI44385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S912"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF3">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="4"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="8034" checksum="0B87636B18D5D1A8" modified="2018-12-05" version="1" fragment="single">QPNTVASWTDLKKLFLEKYFPTSRAASIRNEICDIRQCDNESLAEYWERFKQLVSSCLQHQISEQLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBU0</accession>
    <name>A0A392SBU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010357188">
        <property type="protein sequence ID" value="MCI46413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6569" checksum="ED6F151F881AF6BA" modified="2018-12-05" version="1">MKSSPKAWRSEKSKSCTLELVTVVPGWPQFCQAWQKLGKLVPKPCHDSCLSGHGRGRIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH94</accession>
    <name>A0A392SH94_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein transport protein SEC23</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasmic vesicle</location>
            <location evidence="1">COPII-coated vesicle membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SEC23/SEC24 family. SEC23 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010377680">
        <property type="protein sequence ID" value="MCI47832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030127">
        <property type="term" value="C:COPII vesicle coat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070971">
        <property type="term" value="C:endoplasmic reticulum exit site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005096">
        <property type="term" value="F:GTPase activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090110">
        <property type="term" value="P:COPII-coated vesicle cargo loading"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006886">
        <property type="term" value="P:intracellular protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037364">
        <property type="entry name" value="Sec23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006896">
        <property type="entry name" value="Sec23/24_trunk_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11141">
        <property type="entry name" value="PROTEIN TRANSPORT PROTEIN SEC23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11141:SF0">
        <property type="entry name" value="PROTEIN TRANSPORT PROTEIN SEC23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04811">
        <property type="entry name" value="Sec23_trunk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0968">Cytoplasmic vesicle</keyword>
    <keyword evidence="1" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="1" id="KW-0931">ER-Golgi transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0653">Protein transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Sec23/Sec24 trunk" evidence="2">
        <location>
            <begin position="2"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU365030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI47832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5585" checksum="C96D5087030572FD" modified="2018-12-05" version="1" fragment="single">RSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDVFASALDQIIHSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIE3</accession>
    <name>A0A392SIE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010383418">
        <property type="protein sequence ID" value="MCI48232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4473" checksum="7274DFD3E34CA779" modified="2018-12-05" version="1" fragment="single">MVILFSRVNRKYFKATAIFAIICIANSFSVVLYLSYFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJE8</accession>
    <name>A0A392SJE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010394771">
        <property type="protein sequence ID" value="MCI49028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5146" checksum="F8027B12B0F60398" modified="2018-12-05" version="1" fragment="single">GYLRLGTFLQLQAYSASIHYTDVLPDALTSVASKQARITKQKMMND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SK25</accession>
    <name>A0A392SK25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Myosin-11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010394562">
        <property type="protein sequence ID" value="MCI49009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SK25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48163">
        <property type="entry name" value="BNAC02G25670D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48163:SF2">
        <property type="entry name" value="EXPRESSED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4571" checksum="FAB07DF463BD22E4" modified="2018-12-05" version="1" fragment="single">MEKDAAVVAREDLLAQLRTLKKRLKEAEEEQYRVWKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKE6</accession>
    <name>A0A392SKE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010396320">
        <property type="protein sequence ID" value="MCI49129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7779" checksum="CB146BBB494457E6" modified="2018-12-05" version="1" fragment="single">KTCFDLSRARGAAPMAPGAVSRAGGSGLLELAHGAALSGPDAAAWYKVLLLHFAAARKRKKGVLRVFFTNIKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SL96</accession>
    <name>A0A392SL96_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010389222">
        <property type="protein sequence ID" value="MCI48626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SL96"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7700" checksum="44C1085262074C6D" modified="2018-12-05" version="1" fragment="single">MFRDLHLTVKFAPGALKLGMITIWNGLLEEIANCQDDELLMARRNLIVRGTTTEFKVGPNNILRCNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SN66</accession>
    <name>A0A392SN66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Elongation factor 1-alpha-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010414974">
        <property type="protein sequence ID" value="MCI50338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SN66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000005">
        <property type="entry name" value="Elongation factor 1-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054696">
        <property type="entry name" value="GTP-eEF1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44830">
        <property type="entry name" value="ELONGATION FACTOR 1 ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44830:SF1">
        <property type="entry name" value="TR-TYPE G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22594">
        <property type="entry name" value="GTP-eEF1A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP-eEF1A C-terminal" evidence="6">
        <location>
            <begin position="2"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF22594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI50338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10173" checksum="2903A39BECB432D1" modified="2018-12-05" version="1" fragment="single">IAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEAGTGKITKSALKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS47</accession>
    <name>A0A392SS47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010435766">
        <property type="protein sequence ID" value="MCI51688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5238" checksum="8F63EB956A001539" modified="2018-12-05" version="1" fragment="single">MVAWSVELSEFDIAYVPRGAIKSQVLADFVFELTNPPNESEPRPWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STV9</accession>
    <name>A0A392STV9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010444918">
        <property type="protein sequence ID" value="MCI52281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="89" mass="9778" checksum="F3E215436C848DEA" modified="2018-12-05" version="1" fragment="single">ELPQDKSEAIKMKKLAAWYTMMGDKLYKRGFSLPMLLCVSEVEARRIMDEIHGGSCGSHIGARSLAGKVMRAVTSANDSLIFTMLLASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVT7</accession>
    <name>A0A392SVT7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase 7 long form-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010455490">
        <property type="protein sequence ID" value="MCI52951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVT7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="10056" checksum="8CBF9D164D50ADF4" modified="2018-12-05" version="1" fragment="single">MYLPERVLHQFGYTQTIPRYPSQSADPLATRDRISAHFAQYLDRVLTPEQRGLVVIHPWDVAPRYMRWYFRISHPYMMPLPHGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SWW1</accession>
    <name>A0A392SWW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010448924">
        <property type="protein sequence ID" value="MCI52545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SWW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4819" checksum="25F1FA172A4B3C16" modified="2018-12-05" version="1" fragment="single">MEKVEKSAKFDSAWGVRSQPQHAVLLFAVCFLRNARAGLRTAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1D7</accession>
    <name>A0A392T1D7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010474754">
        <property type="protein sequence ID" value="MCI54135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1D7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7284" checksum="6A92525B4A9E5A02" modified="2018-12-05" version="1" fragment="single">MGELEEYYEEETAKARDRAEPSQRKLPPKQKDPGTFTVPFCFGKVQGRALCDLGSSISLMSLQFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4I7</accession>
    <name>A0A392T4I7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010505226">
        <property type="protein sequence ID" value="MCI55998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4I7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5236" checksum="8998BD30767343E0" modified="2018-12-05" version="1" fragment="single">MALMAIKGLSPALRAIYTPLQQWSQVHNPPPLHWGRNGATSDAVTLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5A0</accession>
    <name>A0A392T5A0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010508925">
        <property type="protein sequence ID" value="MCI56219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5A0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7885" checksum="20844F4F4D7F94EF" modified="2018-12-05" version="1" fragment="single">MKAVMHLQGELASDAPFIEAVENIHYCHHELVSNIFDQTMNLIENMRVHEELINLAFAEEEAVNHRIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5H4</accession>
    <name>A0A392T5H4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010501309">
        <property type="protein sequence ID" value="MCI55774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5H4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8327" checksum="4AC920A14410A108" modified="2018-12-05" version="1" fragment="single">SVSSSLLSFSLSFAFTESTFFIGGDSRRGDPSFLVTHSVVMIFLMNLTFSSPGCGISRPWKSVQLSSFDELFYGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7Z5</accession>
    <name>A0A392T7Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510074">
        <property type="protein sequence ID" value="MCI56296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2682" checksum="D0299A0A0929877F" modified="2018-12-05" version="1" fragment="single">STRETSTNNMVGVTGQKSRGSAEGVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TD66</accession>
    <name>A0A392TD66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010556443">
        <property type="protein sequence ID" value="MCI59059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TD66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6126" checksum="5E96519C06C97516" modified="2018-12-05" version="1" fragment="single">VKFESGLRPDIKQLIGFLEIRDFPTLMTKARICDEDGNTKSSYYKAMNDRKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEY4</accession>
    <name>A0A392TEY4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010568510">
        <property type="protein sequence ID" value="MCI59699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEY4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8756" checksum="93C4080FDE9CC602" modified="2018-12-05" version="1" fragment="single">PIDDGGGDSLFLKGDGNRDRGLAVGNRWLTAVRRVNAEGTTTKMEAWRGERKQVQTSNPIRAHVFCFQNTLFYFPNTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG15</accession>
    <name>A0A392TG15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575313">
        <property type="protein sequence ID" value="MCI60099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8243" checksum="A0B72156A216EDFB" modified="2018-12-05" version="1" fragment="single">RKEVLKVLKKNARRRRGRNSGSRSSETAPQVSTGVSSLSASVNNDWKNWVAMQGNAQLAEDDVRDIGDVIGVKFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TK99</accession>
    <name>A0A392TK99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010602162">
        <property type="protein sequence ID" value="MCI61571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TK99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7478" checksum="C72B0E767A7D4844" modified="2018-12-05" version="1" fragment="single">MDRNGILFNNANISLQAAITKIRTAIALSVSSINNTVDLISASATANFAPGIVAGTIADRALNQLQVAQRPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP81</accession>
    <name>A0A392TP81_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">PHD finger protein ALFIN-LIKE</fullName>
        </recommendedName>
    </protein>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Interacts with H3K4me3 and to a lesser extent with H3K4me2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="11">The PHD-type zinc finger mediates the binding to H3K4me3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the Alfin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010628901">
        <property type="protein sequence ID" value="MCI62981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.10:FF:000306">
        <property type="entry name" value="PHD finger alfin-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.10">
        <property type="entry name" value="Zinc/RING finger domain, C3HC4 (zinc finger)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045104">
        <property type="entry name" value="Alfin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019786">
        <property type="entry name" value="Zinc_finger_PHD-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001965">
        <property type="entry name" value="Znf_PHD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019787">
        <property type="entry name" value="Znf_PHD-finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013083">
        <property type="entry name" value="Znf_RING/FYVE/PHD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12321">
        <property type="entry name" value="CPG BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12321:SF98">
        <property type="entry name" value="PHD FINGER PROTEIN ALFIN-LIKE 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00628">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00249">
        <property type="entry name" value="PHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="FYVE/PHD zinc finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01359">
        <property type="entry name" value="ZF_PHD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50016">
        <property type="entry name" value="ZF_PHD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="3 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 11" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5 11" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 10 11" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="PHD-type" evidence="12">
        <location>
            <begin position="6"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU369089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI62981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6899" checksum="408322BBA3B47B97" modified="2018-12-05" version="1" fragment="single">EEEHGDASCGACGESYATDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSKRART</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQG7</accession>
    <name>A0A392TQG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010623312">
        <property type="protein sequence ID" value="MCI62677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6665" checksum="A470F9A10DEB8CBE" modified="2018-12-05" version="1" fragment="single">MRGTSSGELQFDPEIEKTARANHKEVRRAKQAARLATWEQPSQEEEEDTSSPYISEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVZ9</accession>
    <name>A0A392TVZ9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Integrase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010659729">
        <property type="protein sequence ID" value="MCI64617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="77" mass="8744" checksum="B8461803747E7DFC" modified="2018-12-05" version="1" fragment="single">MAKRDLIVRGTTTEFKVGPENILRCNGRVCVPDAKNLRNVILEEAHKSKLSIHPGATEILAHAVDRCYRQCYRNCYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXG3</accession>
    <name>A0A392TXG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010683887">
        <property type="protein sequence ID" value="MCI65851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3906" checksum="6AD8E8C46E61867F" modified="2018-12-05" version="1" fragment="single">MASNGERWRLSRSTTIILAQRRKPSFEAQPSKMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U104</accession>
    <name>A0A392U104_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010709015">
        <property type="protein sequence ID" value="MCI67101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U104"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="53" mass="5891" checksum="D6EF6F9D97630EF8" modified="2018-12-05" version="1" fragment="single">MYWEAFKAMQLAGEQLKPYNGTLVGFAGEQVEVMGHVTPLTTFGEKENAKTIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5A9</accession>
    <name>A0A392U5A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010740479">
        <property type="protein sequence ID" value="MCI68661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3480" checksum="7467AC241EB61DBB" modified="2018-12-05" version="1" fragment="single">MVIAMVDHVYRVRNGGYNGYNGQENCGFLDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6Z5</accession>
    <name>A0A392U6Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010752982">
        <property type="protein sequence ID" value="MCI69281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4243" checksum="5430EC88F9B92C52" modified="2018-12-05" version="1" fragment="single">GDPYFCMSYHGLLPPLDDVALPDVVGREDGGDFVEYPGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UB44</accession>
    <name>A0A392UB44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010782229">
        <property type="protein sequence ID" value="MCI70749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UB44"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9728" checksum="08101543426A5F70" modified="2018-12-05" version="1" fragment="single">GRAKKRSAKTKREASDSDDSAERRRRKKKREHRRSRRDRSPDDSDEYRHKKRKSRKEKTRRRSRLSDSDSETSEDSTSRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UE42</accession>
    <name>A0A392UE42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010804060">
        <property type="protein sequence ID" value="MCI71791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UE42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4014" checksum="7B6255A7BF0A4A96" modified="2018-12-05" version="1" fragment="single">VQPPHSLQRTVDEGASSTFGCDRRVEDLSWNNKFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UT74</accession>
    <name>A0A392UT74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010885201">
        <property type="protein sequence ID" value="MCI75540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UT74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5280" checksum="0F800ED8148458BD" modified="2018-12-05" version="1" fragment="single">RRTGRTGQTSLRAAQTSPARSASHRRRADTQHKAARNAASLCAQRIHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXV6</accession>
    <name>A0A392UXV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010984944">
        <property type="protein sequence ID" value="MCI79962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7819" checksum="106C797903EE3D47" modified="2018-12-05" version="1" fragment="single">RLMKEEGIIITGDDIAKVSPLKERKDSSESEEDQPAPEGKVTADTAAATQRGRGLIKRKLRMLWKRKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY87</accession>
    <name>A0A392UY87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010987956">
        <property type="protein sequence ID" value="MCI80102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4001" checksum="D59AF7C093BF4B55" modified="2018-12-05" version="1" fragment="single">MDVSLSWSILNSVVSAGGRVFDVGGWRLTISAFVMGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ86</accession>
    <name>A0A392UZ86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010989662">
        <property type="protein sequence ID" value="MCI80181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7530" checksum="B8D86BCBFAE288C6" modified="2018-12-05" version="1" fragment="single">AVESAKPDGRMGDGTSLFLPKTTCPLLPSPAALTTVPRGMSLQSQGGLWGDGPVLEDWEKDLGPPSGGGVSSPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V028</accession>
    <name>A0A392V028_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011023302">
        <property type="protein sequence ID" value="MCI81616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V028"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3311" checksum="61C453FDABB9A504" modified="2018-12-05" version="1" fragment="single">MARCAVDAEEAWNCFGQLRVAQKKMARRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V052</accession>
    <name>A0A392V052_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011003836">
        <property type="protein sequence ID" value="MCI80813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V052"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7867" checksum="945DFA3A88D28208" modified="2018-12-05" version="1" fragment="single">MLGEYMRLCEAPVWIERDELEREVVEMDAQAIVKTCNTDCVIGNIFLVWWCWEMMESLPQVSIQWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6J6</accession>
    <name>A0A392V6J6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011078306">
        <property type="protein sequence ID" value="MCI83916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6J6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="15"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6674" checksum="AE6026A55C4D9DD4" modified="2018-12-05" version="1" fragment="single">MMRVMEKVIVLNDEQGDSNREMAKLRIQNEKLEARALKLDGKLTDLRGKQENFAAQAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VB74</accession>
    <name>A0A392VB74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribosomal protein L16</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118447">
        <property type="protein sequence ID" value="MCI85554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VB74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="entry name" value="Ribosomal protein L10e/L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047873">
        <property type="entry name" value="Ribosomal_uL16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_uL16_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_uL16_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="Ribosomal protein L16p/L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI85554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4493" checksum="6F410FF3A818FA46" modified="2018-12-05" version="1" fragment="single">MGREKGNPTGWIARVSAGQALFEIDGLSLSDARQAATLAAHKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBZ1</accession>
    <name>A0A392VBZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011125192">
        <property type="protein sequence ID" value="MCI85846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4672" checksum="E2F1F73FE6FB27C4" modified="2018-12-05" version="1" fragment="single">MNLLVKNNISANYRGILRDGSVVVIKCIAKTSCKSDETEFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMU6</accession>
    <name>A0A392VMU6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011226025">
        <property type="protein sequence ID" value="MCI89714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="42" mass="4827" checksum="25CE2BD0F037F603" modified="2018-12-05" version="1" fragment="single">MCCREVTRSVKAQEDVFVMFASLRMEEKNEVDALPVVCEFAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VP80</accession>
    <name>A0A392VP80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011225422">
        <property type="protein sequence ID" value="MCI89687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VP80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5784" checksum="AFDB4EA3F2AD53AB" modified="2018-12-05" version="1" fragment="single">MTTLSNHWNNNTNNNTANNNNHANNFRLRHVATETLDDNQPSLPEKLDVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQ63</accession>
    <name>A0A392VQ63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011245150">
        <property type="protein sequence ID" value="MCI90456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQ63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5816" checksum="9B1DA5DA41E0AF97" modified="2018-12-05" version="1">MNEERSMERVRDEEIWMERNRWRELDGVRWMKRAMERDQWMEID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSG8</accession>
    <name>A0A392VSG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011256185">
        <property type="protein sequence ID" value="MCI90857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3357" checksum="8D428F8C974DC1B7" modified="2018-12-05" version="1" fragment="single">QQSASDDEMDREIDAAFDLYTTPGGSASQGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSR8</accession>
    <name>A0A392VSR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011246625">
        <property type="protein sequence ID" value="MCI90512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7164" checksum="FE71EDBB111530FC" modified="2018-12-05" version="1" fragment="single">MCCREVARSVKAQEDVFAMFASLRMEEKIEVDALPVVREFADVFLDDILDLPPEREVEFSID</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWX9</accession>
    <name>A0A392VWX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011287307">
        <property type="protein sequence ID" value="MCI91972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6512" checksum="5FEBB67F23D5B278" modified="2018-12-05" version="1" fragment="single">MGDERQPPRCTMRDYCKRSDAEQISLGFRPANPVNFDIKGNVLAGLRENQFDGRANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZ23</accession>
    <name>A0A392VZ23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein OBERON 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011280567">
        <property type="protein sequence ID" value="MCI91710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZ23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5282" checksum="028A91D118774B3E" modified="2018-12-05" version="1" fragment="single">MIANKDLRNGVADSDGETSRNKLSRPNFEPNKRYPDDKDVVFLRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1M1</accession>
    <name>A0A392W1M1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011359917">
        <property type="protein sequence ID" value="MCI94564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1M1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="27"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7213" checksum="A0FF99E03B5DE54E" modified="2018-12-05" version="1" fragment="single">VTDVEDDVAASDQQVDVSEDDKEPESNSEVSNSESDNVPSNKGPYVTVQKNHPKELIIGNPDQGITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W341</accession>
    <name>A0A392W341_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011367477">
        <property type="protein sequence ID" value="MCI94826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W341"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7416" checksum="7A1EC38CF17C4ABE" modified="2018-12-05" version="1" fragment="single">PEGSDEKDIMRAPIPAGFERPPPLGTYDGQTDPDEHIDNINAVLDFLMVSGAIRCRLFSTTLRKGAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4H0</accession>
    <name>A0A392W4H0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011362602">
        <property type="protein sequence ID" value="MCI94659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4H0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5934" checksum="3AC6DFE3223A0118" modified="2018-12-05" version="1" fragment="single">GARANNAGSKHLLNHLSHNLFVTLRISVWPYVDRRRMRFQMDVVILDAMRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6I8</accession>
    <name>A0A392W6I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011410451">
        <property type="protein sequence ID" value="MCI96278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6030" checksum="DDD389C89C18DD3E" modified="2018-12-05" version="1" fragment="single">SKAHSSARRELVNVDKIPRRAKGKRVAASTTEGEAQHEPQDECEPEPECNTQTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6K8</accession>
    <name>A0A392W6K8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011410340">
        <property type="protein sequence ID" value="MCI96274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6K8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2433" checksum="4E7A16031CA54F77" modified="2018-12-05" version="1" fragment="single">MDMNAYTSFMTNNIGQSLLPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA91</accession>
    <name>A0A392WA91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011447263">
        <property type="protein sequence ID" value="MCI97554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.4130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041118">
        <property type="entry name" value="Rx_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18052">
        <property type="entry name" value="Rx_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance N-terminal" evidence="4">
        <location>
            <begin position="6"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI97554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5410" checksum="D81B6FD86AA6FC61" modified="2018-12-05" version="1" fragment="single">MAEALIGVAFENLMSLLQIEFSTISGISSKAQKLSTNLDLIRAVLEDAEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAE4</accession>
    <name>A0A392WAE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011406343">
        <property type="protein sequence ID" value="MCI96111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2228" checksum="EAFFA1F9BA1B2972" modified="2018-12-05" version="1" fragment="single">MKKLRNKEISSVKVVWGGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAX0</accession>
    <name>A0A392WAX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011441798">
        <property type="protein sequence ID" value="MCI97386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4359" checksum="0AB19BD42D32BB24" modified="2018-12-05" version="1" fragment="single">MMMVPCCLGLSSSGMVETETPRFCLSNALRFVPVPKHSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW79</accession>
    <name>A0A392MW79_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010021105">
        <property type="protein sequence ID" value="MCH91751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW79"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64484">
        <property type="entry name" value="beta and beta-prime subunits of DNA dependent RNA-polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RNA polymerase Rpb1" evidence="3">
        <location>
            <begin position="41"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH91751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9669" checksum="CA056827DD884541" modified="2018-12-05" version="1" fragment="single">NKELVNSNCCRQLDRSSPYINKLPDALKGGAENFIRDFSSKQRNSSSMKHADFLQLMEHKYVSSLAQPGEPVGVLAAQSVGEPATQMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N213</accession>
    <name>A0A392N213_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cullin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025904">
        <property type="protein sequence ID" value="MCH93846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="210"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="281"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="344" mass="38609" checksum="75AF3BBDB4100A31" modified="2018-12-05" version="1">MLSPQMENKKAIILKELVKPDIAPTTTTLLNKCSSLXXXXXXXXXXXXXNIIPRTGGSDTFSIMHIHLVYYIFKKLPVNLPHLLFDNLCTAIQKSNFDKSPTVIYPRLLSELLYQTKLKKVLTKVYADLRGSHWPKKFSPDFLVPAGIVAKGELKKPSKGLPNVYKEHLYPNGFPIISEADNEEVIQLFLAQIQKEHNVFIPRDMIPQAPLQISPKKRKGTIKREKDSKKQKVSSKRVLRVDEDSDDTVEDVPLSKRLKQSNPAVDRQKGKGKATEIPNISVHSVSKPTPSTPSEDNQPLSTIFPNIASGQPTSPQSSETTKETLDLNLLSVFCKITQTPLYNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2T1</accession>
    <name>A0A392N2T1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023493">
        <property type="protein sequence ID" value="MCH92804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2T1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8458" checksum="2CCCF049544A0823" modified="2018-12-05" version="1" fragment="single">MENSSDIASANRDNFSTSLRETSKGPSREMEVTPPDHMKKGSKKIKVNSKQGQISANLNSQDNSDDDFQEARKTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4W7</accession>
    <name>A0A392N4W7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">threonine ammonia-lyase</fullName>
            <ecNumber evidence="5">4.3.1.19</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-threonine = 2-oxobutanoate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22108"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.3.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.19" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010027744">
        <property type="protein sequence ID" value="MCH94622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4W7"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:threonine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006565">
        <property type="term" value="P:L-serine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:L-threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050147">
        <property type="entry name" value="Ser/Thr_Dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001721">
        <property type="entry name" value="TD_ACT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078:SF11">
        <property type="entry name" value="THREONINE DEHYDRATASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078">
        <property type="entry name" value="THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51672">
        <property type="entry name" value="ACT_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT-like" evidence="11">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH94622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="13904" checksum="F360185510A54844" modified="2018-12-05" version="1" fragment="single">MLDQVGGFADGVAVKEVDEETFRLCKELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKGENVIAITSGANMNFDKLRIVTELANVGRKQEAILQTILPEVPGSFKQFCEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5W3</accession>
    <name>A0A392N5W3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029164">
        <property type="protein sequence ID" value="MCH95186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5W3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11922" checksum="512DD31E66C889BE" modified="2018-12-05" version="1" fragment="single">PPPQPAQKQRRVNPKPPSQEERLCFLFMETSIYHHHGPFIRQIIESFIPRTLEKLPKLESYDKTVDRDEHVECIDIVLDYQSSRGTVKYKLFVLTLCPGNGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N763</accession>
    <name>A0A392N763_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">LINE-1 reverse transcriptase like</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028757">
        <property type="protein sequence ID" value="MCH95019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N763"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="341" mass="40068" checksum="61359F27A79A61FB" modified="2018-12-05" version="1" fragment="single">MREFGGFIEDANLMDLPLLGRRFTWYHANGRSMSRIDRFLVSPEWLEMWGDCLVWVCPRDISDHCPLILKNNNNVWGPKPFRFNNHWIENKHFMEVVEACWREQEVSGWMGYVLQAKLRCLKLRLKDWSMVEFGNVENKVKILIENIQELDLRGEITGLASHEMIARKELFVEFWKLQKYRETIIFQRSKSKWLRQGDAKSSFFHRCVIARSKRNVISALRVENLWFESPSQIQEAVVNYFSNHFKASNTIYPSLEGVPFPVLSVEENMFLTAPFSLEEIHKVVIESDGDKSPGPDGFNFAFVKSCWELLKSEIRILFDQFHGIGNLPKSFLFYFVALIPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCJ0</accession>
    <name>A0A392NCJ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Putative zinc metalloprotease EGY1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Plastid</location>
            <location evidence="1">Chloroplast membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035317">
        <property type="protein sequence ID" value="MCH97577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCJ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031969">
        <property type="term" value="C:chloroplast membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044838">
        <property type="entry name" value="EGY1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31412">
        <property type="entry name" value="ZINC METALLOPROTEASE EGY1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31412:SF0">
        <property type="entry name" value="ZINC METALLOPROTEASE EGY1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0150">Chloroplast</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4" id="KW-0934">Plastid</keyword>
    <keyword evidence="5 12" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0809">Transit peptide</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="non-terminal residue" evidence="12">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCH97577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7958" checksum="02E9E5132CDF1654" modified="2018-12-05" version="1" fragment="single">GAFGKGALMVSGLTTYTLLGLGVRSPEKPCLNDVTEVGTWRQTFVGIAIFLAILTLLPVYDELADELGIGLVNTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPR9</accession>
    <name>A0A392NPR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mitogen-activated protein kinase 16-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047380">
        <property type="protein sequence ID" value="MCI01867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="193" mass="20969" checksum="5F35319223FE9186" modified="2018-12-05" version="1" fragment="single">LCSQSILDSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMHNTAEVADDLSKCCIKEVEQQPVDRSSAILPMTRLPLQAPQNMQGLAARPGKVVGSAMRYNNCGVAVVAETEQRRVVRNPSVTAQYAASNGSYPRRNPNYKNERADDDGIEGSNGLQPKPQYIARKVAAAQGGAGGQWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NSC2</accession>
    <name>A0A392NSC2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">protein-serine/threonine phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.16</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the PP2C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.16" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010047947">
        <property type="protein sequence ID" value="MCI02049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NSC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000222">
        <property type="entry name" value="PP2C_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01032">
        <property type="entry name" value="PPM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 9" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI02049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17195" checksum="0997BF62F210A974" modified="2018-12-05" version="1" fragment="single">TYVGVYDGHGGPEASRFVNNHLFPYLHKFASEQGGLSVDVIKKAFSATEEDFLHLVKLSLPVSPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRRYSENKNYPVEAIRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUW8</accession>
    <name>A0A392NUW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052755">
        <property type="protein sequence ID" value="MCI03618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10720" checksum="A29CF1EAC0CE0754" modified="2018-12-05" version="1">MEELPVVCKFPDVFPGDVSDLPPEREVEFAIDLIPGTSPISMAPYRMSVSELKELKKQLEELLEKKFIRPSVSPWGAPGESRGCAEDSLSNEIWSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7R0</accession>
    <name>A0A392P7R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CNGC5-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067929">
        <property type="protein sequence ID" value="MCI08151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF48">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="130"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="247" mass="28405" checksum="DB0BBB065689E13E" modified="2018-12-05" version="1" fragment="single">MWWPKDGTAEGKEKFLTNSFTGRTNSKASIARFQEAQMQHAKVLVQEESYWRQRAKMHWLKEGDLNTXIPPRVTIKDNERLEAPITKEEIRTALFQMHPDKSPGPDGFNPAFFQNFWDICGDDVFGATKDWLEKGYFPSTLNETNICLIPKCDSPISMKDFRPISLCNVLYKMVSKVLANRLKICLEKCVLEEQSAFVEGRSILDNAIIAIEIIHYLKRKTKGAKGELALKIDISKAYDRVEWGFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8D4</accession>
    <name>A0A392P8D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067415">
        <property type="protein sequence ID" value="MCI08002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7118" checksum="F15E5CE58F336EBB" modified="2018-12-05" version="1" fragment="single">MDSMGRRTLTEGLDDESEEDENVDNEYTIEEEQEEDGILNNEGCRWSALFEGLNMLKVQACD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8Q7</accession>
    <name>A0A392P8Q7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative galactinol-sucrose galactosyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069062">
        <property type="protein sequence ID" value="MCI08448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8Q7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008811">
        <property type="entry name" value="Glycosyl_hydrolases_36"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31268">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31268:SF29">
        <property type="entry name" value="GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05691">
        <property type="entry name" value="Raffinose_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14752" checksum="6029C4A730ED4F31" modified="2018-12-05" version="1" fragment="single">MAEYHAAARAVGGCPIYVSDKPGHHDFNLLKKLVLPDGSILRGKLPGRPTKDCLFADPARDGKSLLKIWNMNDYSGVVGVFNCQGAGWCKVGKKNLIHDENPGTVTGIIRAKDIDYLSTVADDKWTGDAVIFSHLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P985</accession>
    <name>A0A392P985_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lysine-specific demethylase 5B</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067597">
        <property type="protein sequence ID" value="MCI08049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P985"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI08049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="17237" checksum="0E3418C92642648B" modified="2018-12-05" version="1" fragment="single">VKSVDFTCGRKYTLYLREDIADMEAAAKMFEQEDRILDEISKQSKSDQDMYSYPLSDMFQRAEANGYERYCELKLDSIIEFYTTPEQSTNNQECGTQNQFVLGHCSEVHTPEASEISFSAASTLCSLSEPLDCSSAPKNVSFMNMNMVFEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9Z4</accession>
    <name>A0A392P9Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068377">
        <property type="protein sequence ID" value="MCI08260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37711">
        <property type="entry name" value="OS01G0908400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37711:SF2">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="5189" checksum="028B8942CA0C127D" modified="2018-12-05" version="1">MDKVHVWIALRQDEKQERLEKEAEIRRVREELLRQQANQNDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PBF6</accession>
    <name>A0A392PBF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein ssh4</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069641">
        <property type="protein sequence ID" value="MCI08616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PBF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001870">
        <property type="entry name" value="B30.2/SPRY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043136">
        <property type="entry name" value="B30.2/SPRY_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44991">
        <property type="entry name" value="IMMUNOGLOBULIN SUPERFAMILY MEMBER 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44991:SF1">
        <property type="entry name" value="IMMUNOGLOBULIN SUPERFAMILY MEMBER 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="Concanavalin A-like lectins/glucanases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50188">
        <property type="entry name" value="B302_SPRY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B30.2/SPRY" evidence="2">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18036" checksum="21F147BD35CB2126" modified="2018-12-05" version="1">MKLVFESDKAEWIGTDKVIGCGFDPRQKKVFFTLDSELMHVIHCQTEEFSTPLYPTLAANIDIMVLVNFGQNAFKYAPANAQRTPNPCFVSPLVNSPTISYDDSKELFSMGRIDSQWHNRTTTKGSHNNGNNNSTMDSDEESDADLFEIVIDGSGKSSNTKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCH3</accession>
    <name>A0A392PCH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Kelch-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; protein ubiquitination.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071016">
        <property type="protein sequence ID" value="MCI08996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010114">
        <property type="term" value="P:response to red light"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.420:FF:000008">
        <property type="entry name" value="BTB/POZ domain-containing protein POB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011705">
        <property type="entry name" value="BACK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045890">
        <property type="entry name" value="POB1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336:SF3">
        <property type="entry name" value="BTB_POZ DOMAIN-CONTAINING PROTEIN POB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46336">
        <property type="entry name" value="OS02G0260700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07707">
        <property type="entry name" value="BACK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="BACK" evidence="4">
        <location>
            <begin position="2"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI08996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9439" checksum="F9976BB150262944" modified="2018-12-05" version="1" fragment="single">FQEEVMNLPLAGIEAILSSDDLQVASEDAVYDFVLKWARHQYSNLEERREVLVILNMMFHPSLYLKPYFSRQRFHIANGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF21</accession>
    <name>A0A392PF21_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Transmembrane 9 superfamily member</fullName>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endosome membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Golgi apparatus membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010074932">
        <property type="protein sequence ID" value="MCI10070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010008">
        <property type="term" value="C:endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000139">
        <property type="term" value="C:Golgi membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072657">
        <property type="term" value="P:protein localization to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004240">
        <property type="entry name" value="EMP70"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10766:SF55">
        <property type="entry name" value="TRANSMEMBRANE 9 SUPERFAMILY MEMBER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10766">
        <property type="entry name" value="TRANSMEMBRANE 9 SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02990">
        <property type="entry name" value="EMP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0967">Endosome</keyword>
    <keyword evidence="8" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="4 10 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="100"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="215"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI10070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="266" mass="29589" checksum="A9DED5C8A71916EB" modified="2018-12-05" version="1" fragment="single">QPIAFSYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLASYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCIMVGDGVQILGMAIVTILFAALGFMSPASRGTLITGMLFFYLVLGIAAGYVAVRLWRTLGNGDQKGWISVAWKAACFFPGIAFSILTXXXXXXXXXXXXXXXXXXXXXXXXLLWFCISVPLTLVGGYFGAKAPHLEYPVRTNQIPREIPQQRYPSWLLVLGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJE9</accession>
    <name>A0A392PJE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Equilibrative nucleotide transporter 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC29A/ENT transporter (TC 2.A.57) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080721">
        <property type="protein sequence ID" value="MCI11590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005337">
        <property type="term" value="F:nucleoside transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002259">
        <property type="entry name" value="Eqnu_transpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOSIDE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10332:SF86">
        <property type="entry name" value="EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01733">
        <property type="entry name" value="Nucleoside_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI11590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10275" checksum="883699A6E156E122" modified="2018-12-05" version="1" fragment="single">SGALTSLLRVLTKLAFEKSNNGLRKGAILFFAISTFIEFLCIILYAIFAKLPIVKYYRSKAASEGSRTVAADLAAAGIQTKKIDQVTTIIMLKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PK56</accession>
    <name>A0A392PK56_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">DNA replication licensing factor MCM3</fullName>
            <ecNumber evidence="11">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Acts as component of the MCM2-7 complex (MCM complex) which is the replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Component of the MCM2-7 complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the MCM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="11"/>
    <dbReference type="EMBL" id="LXQA010082376">
        <property type="protein sequence ID" value="MCI12007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PK56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017116">
        <property type="term" value="F:single-stranded DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006271">
        <property type="term" value="P:DNA strand elongation involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000727">
        <property type="term" value="P:double-strand break repair via break-induced replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902975">
        <property type="term" value="P:mitotic DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.28.10:FF:000008">
        <property type="entry name" value="DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008046">
        <property type="entry name" value="Mcm3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033762">
        <property type="entry name" value="MCM_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF46">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00493">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17207">
        <property type="entry name" value="MCM_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01659">
        <property type="entry name" value="MCMPROTEIN3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00350">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50051">
        <property type="entry name" value="MCM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0539">Nucleus</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM C-terminal AAA(+) ATPase" evidence="12">
        <location>
            <begin position="153"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI12007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="200" mass="21758" checksum="CDD6E824BF11C082" modified="2018-12-05" version="1" fragment="single">VKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVMLLMLGGVEKNLKNGTHLRGLVLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKQ9</accession>
    <name>A0A392PKQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-D-xylosidase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083875">
        <property type="protein sequence ID" value="MCI12362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048046">
        <property type="term" value="C:apoplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009044">
        <property type="term" value="F:xylan 1,4-beta-xylosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031222">
        <property type="term" value="P:arabinan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="entry name" value="Glycoside hydrolase, family 3, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044993">
        <property type="entry name" value="BXL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721:SF8">
        <property type="entry name" value="BETA-D-XYLOSIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721">
        <property type="entry name" value="SUGAR HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12515" checksum="B92026448C158A5E" modified="2018-12-05" version="1" fragment="single">EGRVPFACDPNNGLTRGYKFCNTRVPIHVRVQDLIGRLTLPEKIRLVVNNAIEIPRLGIQGYEWWSEALHGVSNVGPGTKFGAAFHAATSFPQVITTAASFNQSLWLEIGRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKR0</accession>
    <name>A0A392PKR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080333">
        <property type="protein sequence ID" value="MCI11485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218:SF9">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="243" mass="28082" checksum="45C00C14E70CC1CC" modified="2018-12-05" version="1" fragment="single">MMGESMMESLKARYQKPNVTNEENLNQGEVQEVRLGEEAVKFGPMVNNEMDWFDVTNPNAPRPPNKAGASHINSAYFQQRVXLPNIFLKGEVNYVLIKNLFMMSTSSNFFVWNCRGAANTSFYRYCKQYINMHKHVLIVIVETRCDPLRLDRTFKLLGYDGLEVTEVQGYAGGIVVAWQKDNIDVEVCIKKFQFMHLQVKYPSGDHWFFTAIYASPNDENRNVMWEDLRIISNSMQEAWLVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PP07</accession>
    <name>A0A392PP07_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromo domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089757">
        <property type="protein sequence ID" value="MCI13821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PP07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000953">
        <property type="entry name" value="Chromo/chromo_shadow_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF52">
        <property type="entry name" value="OS04G0603800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00298">
        <property type="entry name" value="CHROMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50013">
        <property type="entry name" value="CHROMO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chromo" evidence="1">
        <location>
            <begin position="73"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="173" mass="19654" checksum="90637808497234D4" modified="2018-12-05" version="1" fragment="single">QNSVVNRINAKLAARYYGPFPIIDKIGTVAYKLKLPEGSKVHPVFHVSLLKKAVGSYQEEELPELMEDPVELFEPEAVLATRKIKQQDEEVKQILVHWKGKSAEEATWEDEIMIRSQFPKFVLEDKDNIEGGGIDRPQLADEDALSEQLIQQGAGGPQTWIVYSRRRVRKGND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRF8</accession>
    <name>A0A392PRF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090864">
        <property type="protein sequence ID" value="MCI14079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="158" mass="17736" checksum="3ED9BFD1109F7D41" modified="2018-12-05" version="1">MDADGIIISYANRKALTNEENERYKMHHKVKSILVKSISYSEFLKISDRSSAKSMWDCLCSTYEKKTQGDILKELPGEEGVIRRTIATKEANTSLMDSAISDKNPVSXSELISNDSEVNQSSFMIFGCPHFILALEFDQKKSVKISKGDSEEISNQGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PT56</accession>
    <name>A0A392PT56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Cytochrome P450 71D11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093357">
        <property type="protein sequence ID" value="MCI14679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PT56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.630.10:FF:000146">
        <property type="entry name" value="Os06g0641800 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052306">
        <property type="entry name" value="CYP450_71D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47953:SF19">
        <property type="entry name" value="OS06G0641600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47953">
        <property type="entry name" value="OS08G0105600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12 13" id="KW-0349">Heme</keyword>
    <keyword evidence="9 12 13" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 13" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="8 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR602401-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI14679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="19281" checksum="ABF74915155FC9C5" modified="2018-12-05" version="1">MKGRVDENYINALNYLKLVVKETLRLHPPAPLLLPRECGQACEINGYKIPIKSKVIVNAWAIARDPNYWTEPERFYPERFIDSDIDYKGGNFEYIPFGAGRRICPGSSFGLRNIELALAMLLYHFDWMLPSGTRSEKLDMTEEFGVTVRRKDDLLLFPVVYHPLNVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PU76</accession>
    <name>A0A392PU76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096187">
        <property type="protein sequence ID" value="MCI15374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PU76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF489">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="226" mass="25037" checksum="F3F9875A05612E16" modified="2018-12-05" version="1" fragment="single">MADVKPTSTLLSVSVQLLKDSGDLLPSPTEYRALVGSLQYLSLTRPDIVVSTNKLAQFMQNSRTAHWSALKRVLRYLAGSCDKGVFISATAPLNFHAYSDADWAGDKDDYVSTTSYLLYLGSTPISWSSCKQRSVARSSTEAEYKTLADTASELLWVLSLFTKLGHILTANPVIYCDNLGATHLSANHVFHSRMKRIALAYHFVRENVQHGKFHVSFVSTDDQLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q161</accession>
    <name>A0A392Q161_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proteasome subunit beta type-3-A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106033">
        <property type="protein sequence ID" value="MCI17569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q161"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005839">
        <property type="term" value="C:proteasome core complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="METALLOPROTEASE TLDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194:SF10">
        <property type="entry name" value="PROTEASOME SUBUNIT BETA TYPE-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0647">Proteasome</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9961" checksum="13A322A6AAB792B2" modified="2018-12-05" version="1" fragment="single">MVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2L6</accession>
    <name>A0A392Q2L6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105658">
        <property type="protein sequence ID" value="MCI17485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q2L6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="92"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="92"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="162" mass="17971" checksum="F5D0A3248C7F9EFE" modified="2018-12-05" version="1" fragment="single">DKGRKAPRGNYIGYTPLNTSRETILQECTNAEFAEAGICPPREIKENPRTYTTKFCRFHRSARHDTEDCTQLKDAIEDLIRIGKLSRVEAIKGKETEDSEGDRDPGKRPFVATITGGPTIPAISPVVKKNDNRDDQAKSQNTASKTGGPSNQKGDPEAQRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q5S7</accession>
    <name>A0A392Q5S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleoporin Nup188-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115010">
        <property type="protein sequence ID" value="MCI19484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q5S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044611">
        <property type="term" value="C:nuclear pore inner ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017056">
        <property type="term" value="F:structural constituent of nuclear pore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006606">
        <property type="term" value="P:protein import into nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006405">
        <property type="term" value="P:RNA export from nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044840">
        <property type="entry name" value="Nup188"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31431:SF1">
        <property type="entry name" value="NUCLEOPORIN NUP188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31431">
        <property type="entry name" value="NUCLEOPORIN NUP188 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11975" checksum="165B78B2162CE03B" modified="2018-12-05" version="1">MGTGPFKELSQYLVESKFLGSYQHQFTEDFFAKNMYLFDLKQLRADLNLGAWDCSDWRTSKEIAETMLRFLQDANAVMLLSSSKLSALKELIAVLAVYHDDVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q668</accession>
    <name>A0A392Q668_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115670">
        <property type="protein sequence ID" value="MCI19618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q668"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008507">
        <property type="entry name" value="DUF789"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343:SF29">
        <property type="entry name" value="DUF789 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343">
        <property type="entry name" value="T15D22.8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05623">
        <property type="entry name" value="DUF789"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="94"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12150" checksum="FE12740B75200401" modified="2018-12-05" version="1" fragment="single">MDPVECFALKDLWDCYERWSALGAGTPILLGNGDALTQYYVPYLSSIQIYTNKSVAASRNRKEDIDAAEFEFDSWSEDDSGSSDNLSRSVSNNSSKAWDAASLDSSSDQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6S0</accession>
    <name>A0A392Q6S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin-protein ligase HERC2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116749">
        <property type="protein sequence ID" value="MCI19828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="12993" checksum="7382255DB6A1BBA0" modified="2018-12-05" version="1" fragment="single">MIKILVEFGCNVQVYLVLLKAEIVRQRNDSVDSSPIDRPFGGALELNSSISTGRFSFESAFREPTSNRRRSDVGSDNASMPVRTSVGDGSRVSVSSVGYASSVGSGPDDIESLGDVFIWGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q7B4</accession>
    <name>A0A392Q7B4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein MOR1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010118742">
        <property type="protein sequence ID" value="MCI20211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q7B4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4146" checksum="00B4738B9A1FFBA9" modified="2018-12-05" version="1">MRPLERSLEKLDDVRRKKLSEMISGSEDAVPGGSSTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAG8</accession>
    <name>A0A392QAG8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH three-helical bundle domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124541">
        <property type="protein sequence ID" value="MCI21373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QAG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057523">
        <property type="entry name" value="HTH_74"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25370">
        <property type="entry name" value="HTH_74"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH three-helical bundle" evidence="1">
        <location>
            <begin position="79"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="12679" checksum="F57583741DF8D8A2" modified="2018-12-05" version="1">MRSKVILTSSSGSVDRKLSSDATVKISSGEATSSLSTISSERSLRYANRSRCASATENGIVREAPPPAKKQCVKAAVGTPHLRRRGEVILKFLSLGGSSEGRIREMIGDSPDTSKALRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCH0</accession>
    <name>A0A392QCH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Zinc finger MYM-type protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010125681">
        <property type="protein sequence ID" value="MCI21579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45749:SF37">
        <property type="entry name" value="OS05G0311600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15669" checksum="8D84B81A2E4DACFA" modified="2018-12-05" version="1" fragment="single">MQSSSQEQQIEVNLDELPLDPGKRIKMSAYHPNDRDKIRKVYLQRGPFQPTKHTFPQRXIGSSLRRFCPSWPDFGKKSGGDSFVTEGFTNWKKKERLSSHVGGPNSAHNLAWKKFQDFKKQNQHMEVLLSKQSEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDH0</accession>
    <name>A0A392QDH0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lysine-specific demethylase 3B</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the JARID1 histone demethylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130232">
        <property type="protein sequence ID" value="MCI22391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDH0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031490">
        <property type="term" value="F:chromatin DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032454">
        <property type="term" value="F:histone H3K9 demethylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003712">
        <property type="term" value="F:transcription coregulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.650">
        <property type="entry name" value="Cupin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045109">
        <property type="entry name" value="LSDs-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549">
        <property type="entry name" value="JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12549:SF11">
        <property type="entry name" value="LYSINE-SPECIFIC DEMETHYLASE JMJ25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI22391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6170" checksum="AB8BFF0735069B55" modified="2018-12-05" version="1" fragment="single">SCTKVALDFVSPENVGECVRLTEEIRKLPVNHSSAEDQLEFKNLDLTYQNNRAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QFK6</accession>
    <name>A0A392QFK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MLP-like protein 423</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MLP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010131601">
        <property type="protein sequence ID" value="MCI22647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QFK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000916">
        <property type="entry name" value="Bet_v_I/MLP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052006">
        <property type="entry name" value="MLP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31338">
        <property type="entry name" value="POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31338:SF16">
        <property type="entry name" value="POLYKETIDE CYCLASE_DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00407">
        <property type="entry name" value="Bet_v_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bet v I/Major latex protein" evidence="2">
        <location>
            <begin position="3"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00038242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI22647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7079" checksum="8BB75CE8C154FF48" modified="2018-12-05" version="1" fragment="single">MAALRGKLEVDIELKSNADKYWKIISDSTTIFPKAFPHDYKSIEVLAGDGRSAGSIRRFTYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGA0</accession>
    <name>A0A392QGA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134747">
        <property type="protein sequence ID" value="MCI23208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12320" checksum="31FFC4C668042D39" modified="2018-12-05" version="1">MTPFKVLYGRDPPTIIRQSTIPSGTTMAHQQLQERDEILTQAKLNLTKAQQYMKAQADKRRHELQLQVGDNVLVKLQPYRQQSVALRKNQKLVQKSDAGQQHHSTSTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGH2</accession>
    <name>A0A392QGH2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133460">
        <property type="protein sequence ID" value="MCI22982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13929" checksum="12A861A0917746A4" modified="2018-12-05" version="1" fragment="single">MITKFKESMMKQFAMTDLGKMKYFLGIEVNQTSEGIFIHQMKYATEILARFGMXNCNKVCSPIVTGCKLVKNEDGKATDAKIYKQMVGSLMYLLATRPDLAFSVCLVARFMERPTEMHVAAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGS7</accession>
    <name>A0A392QGS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative esterase F42H10.6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134427">
        <property type="protein sequence ID" value="MCI23149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9398" checksum="A61426AB4BD396A5" modified="2018-12-05" version="1" fragment="single">MATKPSLSTTTVPETDSPEISKDMDPKHVAETQLFVKLMSIGVPVPENCNTNGYFDSFLRNFIKVDQIQRGRISCTIVAKPPICV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHH6</accession>
    <name>A0A392QHH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135323">
        <property type="protein sequence ID" value="MCI23312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8419" checksum="90322F54DF0756AA" modified="2018-12-05" version="1" fragment="single">SDSKVALGDFDEPDIVPWNLRNRWGNCLMLGLNICHSHIYREGNSCADRLANHGHSLDSFMWWDTAPTVCERSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHW6</accession>
    <name>A0A392QHW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Amino acid permease 8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex. May be involved in lateral roots and nodules formation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.1) subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136596">
        <property type="protein sequence ID" value="MCI23539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009734">
        <property type="term" value="P:auxin-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48017">
        <property type="entry name" value="OS05G0424000 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="11" id="KW-0927">Auxin signaling pathway</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="14">
        <location>
            <begin position="2"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="15">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00045588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCI23539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5669" checksum="6B135332C3F2FAF0" modified="2018-12-05" version="1" fragment="single">MAIIFLLCACSGYAAFGSNTPGSILMGSGFKEPFWLIDLANVFLIVHLVGAYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QI20</accession>
    <name>A0A392QI20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycogenin-2</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136382">
        <property type="protein sequence ID" value="MCI23492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QI20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4883" checksum="676412A8EADEBB61" modified="2018-12-05" version="1" fragment="single">TPRDYEFYVAVRVLIKSLSKLNVQADLVVIASLDVPLPWIRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QIX4</accession>
    <name>A0A392QIX4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B beta</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138156">
        <property type="protein sequence ID" value="MCI23844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QIX4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000159">
        <property type="term" value="C:protein phosphatase type 2A complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019888">
        <property type="term" value="F:protein phosphatase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002554">
        <property type="entry name" value="PP2A_B56"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10257">
        <property type="entry name" value="SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10257:SF28">
        <property type="entry name" value="SERINE_THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01603">
        <property type="entry name" value="B56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="15343" checksum="DC99DEB81CE62BFE" modified="2018-12-05" version="1" fragment="single">TEKHSGIADLLEIWGTIVNGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCISQFVQKEPMLGGVVVRGILRYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPICTQITKCINSWNSQVRKISL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R3Z9</accession>
    <name>A0A392R3Z9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186344">
        <property type="protein sequence ID" value="MCI31328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R3Z9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF52">
        <property type="entry name" value="OS04G0603800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="13"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="155" mass="17813" checksum="A932A63F461A6C0B" modified="2018-12-05" version="1" fragment="single">ANAHRRDLNLSIGDLVLVRLHPYRQTSVRRHHYHKLSKRYYGPFTIIERIGPVAYKLQLPPESRIHPVFHISALKPFRGTEIPPPCDLPVDSFNNQPLEQPAAVLAHRTVLIQSLPRTQILVQWKGAPADEASWEDLLTFKKCFPSFHLEDKVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5E5</accession>
    <name>A0A392R5E5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190433">
        <property type="protein sequence ID" value="MCI31828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9714" checksum="AF24CDC6BB8E73EB" modified="2018-12-05" version="1">MPRRALSTLRVEIKEDDSSGSWMELSDSKSVXXXEFSAELLLMHNLRGSFTAKTRLVENINLVGRMLLHGMHTVVVVVVAAAEDKAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7Q6</accession>
    <name>A0A392R7Q6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188217">
        <property type="protein sequence ID" value="MCI31575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7Q6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4837" checksum="6D6906609EA7513E" modified="2018-12-05" version="1" fragment="single">IGGGGGDGGDDGDTVSAWAELRVVKKKMLRERMRMVRGTIYRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R991</accession>
    <name>A0A392R991_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010202065">
        <property type="protein sequence ID" value="MCI33173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R991"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4213" checksum="B06FFC529AC02CD4" modified="2018-12-05" version="1" fragment="single">QMNTTDITPAQEAFVAQMPDEVNHNDTDEVSDPYLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJ10</accession>
    <name>A0A392RJ10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010226895">
        <property type="protein sequence ID" value="MCI35770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJ10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3915" checksum="D8FA118014A0B13A" modified="2018-12-05" version="1" fragment="single">MDSPSRSGKLRVDLVASSCNIESAFAASEDDEKPACK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RN46</accession>
    <name>A0A392RN46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010251431">
        <property type="protein sequence ID" value="MCI38051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RN46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11387" checksum="84EAC3EB9B43EFC6" modified="2018-12-05" version="1" fragment="single">FKSLNAESNAAASDVNKIVDDVVASVKASETLGLEKSKSGKNLGKYGLNATDDVDTGVEASTKDTDETVVNSHSDERMKTISGDKEDFVPVDQGKNDDNDVVNIDDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RP66</accession>
    <name>A0A392RP66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010256111">
        <property type="protein sequence ID" value="MCI38448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RP66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4211" checksum="877B6A03E7234AB7" modified="2018-12-05" version="1">MASPSVLGVEGGVDYVGSDGIKVKGTANGTVLPKIVHPTFVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQ97</accession>
    <name>A0A392RQ97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010259724">
        <property type="protein sequence ID" value="MCI38783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQ97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7305" checksum="EBF8761D8DFCA559" modified="2018-12-05" version="1" fragment="single">RTSHLTYSRQPGTVHHDLLHPLSSGVLAFRGNRTMYPGDKVHVQSIPTTNWAVTFNAMNVKAMATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRW4</accession>
    <name>A0A392RRW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010263237">
        <property type="protein sequence ID" value="MCI39069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4796" checksum="FF64AB7E40A46A69" modified="2018-12-05" version="1" fragment="single">MVRNDHELISSEALAHCCGLRKYHTNSPLALSWPNFKSIILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTI8</accession>
    <name>A0A392RTI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010273412">
        <property type="protein sequence ID" value="MCI39913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017228530" evidence="1">
        <location>
            <begin position="18"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8446" checksum="11C539DEF40E8966" modified="2018-12-05" version="1" fragment="single">MFVQIFLLLNIALKSIAENWFESVYCARRRVYCARCNCQAIMEGSLLPAARGAGLAAPGASAMPIYRLSAFLLFER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S625</accession>
    <name>A0A392S625_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010326721">
        <property type="protein sequence ID" value="MCI44149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S625"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="107" mass="11694" checksum="480AA47AC6A47202" modified="2018-12-05" version="1" fragment="single">MAKQGPSSSRSRGNQGHKSPTPPRCNTPPRHSPPGSDEEDSRCPLSKEIMRAPIPAGFEKPPQLGTYDGQSDPDEHIDKVNAILNFRMVSGAIRCRLFPTTLRKGAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SC50</accession>
    <name>A0A392SC50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010351630">
        <property type="protein sequence ID" value="MCI46007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SC50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8247" checksum="379A3A25AEEB5E5E" modified="2018-12-05" version="1" fragment="single">FYPWRGAPSRVAQRAMLFCFSSFLLEAARRAWVGGATRSLELFRMVFLLLVARRAVVIGAQSYSILGILAYGSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFR7</accession>
    <name>A0A392SFR7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010376896">
        <property type="protein sequence ID" value="MCI47773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFR7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3073" checksum="21A62692F6A050F6" modified="2018-12-05" version="1" fragment="single">YRDEDGEPLMDYDDVQSDREASLEPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGE0</accession>
    <name>A0A392SGE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010373474">
        <property type="protein sequence ID" value="MCI47522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="30"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI47522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9557" checksum="CE352BFF0E8CB7EB" modified="2018-12-05" version="1" fragment="single">GSQVREKQTCYSCGQEGHYANEYRNPRSVCFNCQKPGHFARDCKAPKVEPSVNASQGGRPTARGCVYCMGTEVSGQASNAIHEDCQIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJU2</accession>
    <name>A0A392SJU2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010382195">
        <property type="protein sequence ID" value="MCI48136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJU2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="49"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11487" checksum="577AE6A37B6B8AFD" modified="2018-12-05" version="1" fragment="single">MEKRSPMVADVERAVILDMGPAARQQEFARDAAAVIRLLETALVLNDEQGSSTRDLEKLKGRNEQLEAEVLKLENELIDHRGKQENYVAQAKELREMQAVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SR03</accession>
    <name>A0A392SR03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010415216">
        <property type="protein sequence ID" value="MCI50350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SR03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="15"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10870" checksum="440E2838E4855101" modified="2018-12-05" version="1" fragment="single">IEKVVEEKKKKSDKSSASGAGASEVRTSGNVATSVSAKEKIPKKPRTQKKKATKIVRKMVIEEDEEETDEEPLKCKRKRVGSDKAQPEPKKMNTEAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STR9</accession>
    <name>A0A392STR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010441495">
        <property type="protein sequence ID" value="MCI52059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7306" checksum="C3945EEDF127F460" modified="2018-12-05" version="1" fragment="single">IEGAIQWLDANQLAEADEFEDKMKELETVCNPIIAKMYQGGAGEGADVDDDTAPPPSGSGGAGPKIEEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SW98</accession>
    <name>A0A392SW98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010455263">
        <property type="protein sequence ID" value="MCI52939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SW98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4530" checksum="38962E06C61562F1" modified="2018-12-05" version="1" fragment="single">MSDERQPPRCTMGDYCKRSNAEQISLGFRPANPVNFDIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8U0</accession>
    <name>A0A392T8U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010514479">
        <property type="protein sequence ID" value="MCI56580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="7"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3905" checksum="2FEBFB9B2C2FD68C" modified="2018-12-05" version="1" fragment="single">NLCFTLTDLSVGAPAGTQPPSASPGVETEQRRTRSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TA99</accession>
    <name>A0A392TA99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539740">
        <property type="protein sequence ID" value="MCI58073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TA99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8767" checksum="20073576AF6E7749" modified="2018-12-05" version="1" fragment="single">MLCPRCSTVFDKKAIDGLNKFVPFIKNKGNWSNQKPVANKNVIQHRPIHQRLGYKAPFVPSNKAPANQWFHGQQIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TD42</accession>
    <name>A0A392TD42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010554128">
        <property type="protein sequence ID" value="MCI58928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TD42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5062" checksum="548BCF42CBC9703A" modified="2018-12-05" version="1" fragment="single">GFLSGFGVKPPQSTLFLRAVAWRGSRCRLARFLVSPGEGWRRGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFQ7</accession>
    <name>A0A392TFQ7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="16 17">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">cv. 10/8</strain>
            <tissue evidence="16">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CDPK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010572574">
        <property type="protein sequence ID" value="MCI59951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000004">
        <property type="entry name" value="Calcium-dependent protein kinase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050205">
        <property type="entry name" value="CDPK_Ser/Thr_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24349">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="9 16" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="15">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="16">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00024334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="MCI59951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10389" checksum="C0AFC68D0984F519" modified="2018-12-05" version="1" fragment="single">GVTYLVTHKTTKEQFACKSIATRKLVRRDDLDDIRREVQIMYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THW3</accession>
    <name>A0A392THW3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010587006">
        <property type="protein sequence ID" value="MCI60731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THW3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8038" checksum="317D4E1229E5FD55" modified="2018-12-05" version="1" fragment="single">LANKPARCARTRKPNRPKQLKAARRAEHARTLRQRQNKTRKTEKHGALRHSAARVAPVSELAEKCSFNAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLB2</accession>
    <name>A0A392TLB2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010605813">
        <property type="protein sequence ID" value="MCI61762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="35"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10537" checksum="6BC1258E721FAB1B" modified="2018-12-05" version="1" fragment="single">GGYNPEDAVKWLEEVEIIFEAMRCSEEHKTTLGAYMLREEANHWWKNARQRIGAGGVVITWEMFKREFWVKYFPADVRNRKVVEFLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLJ5</accession>
    <name>A0A392TLJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010600567">
        <property type="protein sequence ID" value="MCI61474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7579" checksum="8B2261BDE2E91698" modified="2018-12-05" version="1" fragment="single">MDQMLERLAGQAYYCFLDGYSGYNQITVDPADQEKTTFTCPFGIFAYRRMPFGLCNAPATFQRCML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMR2</accession>
    <name>A0A392TMR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010618899">
        <property type="protein sequence ID" value="MCI62433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4324" checksum="FAC146B564A686C9" modified="2018-12-05" version="1" fragment="single">LGKLGEMVRWISVSSSIELVLTKSARTLPLISNRPNSRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN29</accession>
    <name>A0A392TN29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010607750">
        <property type="protein sequence ID" value="MCI61857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7196" checksum="00D7E2F5C61A79CB" modified="2018-12-05" version="1" fragment="single">MCFPNSVYAFRVLTRCRVMLVQVMAQRALADAMELMAKAMAQEAMSRTADRVAQEARRGGEDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTH9</accession>
    <name>A0A392TTH9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010636714">
        <property type="protein sequence ID" value="MCI63416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="77" mass="8472" checksum="5024BCF281984621" modified="2018-12-05" version="1" fragment="single">YKDGESMAEHMSVFQNTVNQLVANDIKLDDELQALLLFSSLSDNWEVLVVTLMNSSPSGKLVMATRAGNESSRVEPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVT2</accession>
    <name>A0A392TVT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010663476">
        <property type="protein sequence ID" value="MCI64804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6495" checksum="77B1AAC6FD965AE0" modified="2018-12-05" version="1" fragment="single">SVSANFAGLGNVFFDRVLHLCKAVTFGQTSSSSTSSGGAMASGLISSLIVSSSGQKRIDGDGKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U3Z4</accession>
    <name>A0A392U3Z4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010709150">
        <property type="protein sequence ID" value="MCI67106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U3Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8686" checksum="820A6814918B3742" modified="2018-12-05" version="1" fragment="single">MRVHEELLNLAFAEEEAVIHRIKVLEDELKLLHKKREEFSLSNKDEISLLLAKHRSLARLEARTKNLGDDLKKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6D4</accession>
    <name>A0A392U6D4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010713918">
        <property type="protein sequence ID" value="MCI67295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6D4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6002" checksum="7357BC22CC78272A" modified="2018-12-05" version="1" fragment="single">RSRGIPPRSRWRDQCLAATGSVGAVQLWFPAATAGISVDRSGADPGSISQVRTAISY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U825</accession>
    <name>A0A392U825_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010746088">
        <property type="protein sequence ID" value="MCI68944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U825"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5262" checksum="97C7451797936CBF" modified="2018-12-05" version="1" fragment="single">MFQLMLLKTKDSSQFHVRNNEFQTPDQLYSSFTPCSHISNPTKTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC04</accession>
    <name>A0A392UC04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010774658">
        <property type="protein sequence ID" value="MCI70377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6371" checksum="E3D3AC6295D01516" modified="2018-12-05" version="1" fragment="single">RKEDERRGKEEFAAAVTSGQSPPQAISTSTIGSVSRENKGNKRRDWRKNIREKTPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UG89</accession>
    <name>A0A392UG89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010801933">
        <property type="protein sequence ID" value="MCI71694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UG89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8756" checksum="72F259FE1CB4EB17" modified="2018-12-05" version="1" fragment="single">VEETMHVKFDDKQPDKVSELVEEISDLQVSDDEASEPISFSDPLEVSAPTNSENINDEVTSDAEIDTESEEDAPPKNTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UH28</accession>
    <name>A0A392UH28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein gar2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010827645">
        <property type="protein sequence ID" value="MCI72903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UH28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="25"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8981" checksum="7823CB328A07380E" modified="2018-12-05" version="1" fragment="single">VIQLETLIDGFTKTLQKKQSNATRLDAQNQAYAALVEKAMNAQKNVERMEKELQESVDVSNCDKNIAEWEGRIVELSKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UM14</accession>
    <name>A0A392UM14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dentin sialophosphoprotein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010844034">
        <property type="protein sequence ID" value="MCI73684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UM14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9432" checksum="F20228037CC856CD" modified="2018-12-05" version="1" fragment="single">AVKKERTLIRPFVQSSKRRKEEFSKDRSGKKKRVKTSDREEVDLKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTV1</accession>
    <name>A0A392UTV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010974093">
        <property type="protein sequence ID" value="MCI79458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2361" checksum="4B82B18603E268CF" modified="2018-12-05" version="1" fragment="single">MRFLLRGDSVVLERTFAVNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ76</accession>
    <name>A0A392UZ76_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010973702">
        <property type="protein sequence ID" value="MCI79440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ76"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7133" checksum="4CFF86FD46E30565" modified="2018-12-05" version="1" fragment="single">VVLIPMGADKVFVRSEAGDDILALVNNANDFFLNSCFRTGCVGTTLCSPTKEGLGCVCMAFRCRPGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V1I8</accession>
    <name>A0A392V1I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011014996">
        <property type="protein sequence ID" value="MCI81272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V1I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6651" checksum="6E58835719C656E2" modified="2018-12-05" version="1" fragment="single">SFEVPPVKIVDRKMKRLRTKEIPLVKVIWNEATRDTTWELESKMKEQHPELFKDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2K1</accession>
    <name>A0A392V2K1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011044586">
        <property type="protein sequence ID" value="MCI82486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2K1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7473" checksum="3F04CBFD1AF6A878" modified="2018-12-05" version="1" fragment="single">MEPKQPNRTLQAAIRWNDDGGGLNEMEEMISEKVEVKTEPSDKEMVVRRQSPTHHHPSKLHRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2K3</accession>
    <name>A0A392V2K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011023643">
        <property type="protein sequence ID" value="MCI81632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4857" checksum="3B780122E958FD8E" modified="2018-12-05" version="1" fragment="single">MPFSFSRMIPAPAPVGPDAPSTKIVHLSAPSFEEAGAVISAMKSART</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7R2</accession>
    <name>A0A392V7R2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011044769">
        <property type="protein sequence ID" value="MCI82490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7R2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6796" checksum="8AE93637B5094AEE" modified="2018-12-05" version="1" fragment="single">LKLGLKASKEFLGLCDVWMSMECCWEVMFSMMKLTIGGGVLSRDWKLVELLSFGLVSSGSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7X5</accession>
    <name>A0A392V7X5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011046243">
        <property type="protein sequence ID" value="MCI82550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7X5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4043" checksum="9647CA4B34F5E304" modified="2018-12-05" version="1" fragment="single">LVGSVVTLNLVGRTTVRSSATAIGMGLKPLDVRTDLESD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VB64</accession>
    <name>A0A392VB64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011118072">
        <property type="protein sequence ID" value="MCI85544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VB64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2413" checksum="DF2BA5110792DD87" modified="2018-12-05" version="1" fragment="single">MKVISYHLSTLLSHDVTPRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VCQ0</accession>
    <name>A0A392VCQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011132495">
        <property type="protein sequence ID" value="MCI86134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="11" mass="1185" checksum="304CFFE4CB5DD047" modified="2018-12-05" version="1" fragment="single">MYSPIAYAAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHH9</accession>
    <name>A0A392VHH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011149822">
        <property type="protein sequence ID" value="MCI86799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6212" checksum="43868367E54F93A2" modified="2018-12-05" version="1" fragment="single">MEHSQVPVGVIQQGILEVLEAYPEVFKDTIALPPVRAQVHKITLLPSHGPVNVRPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIA6</accession>
    <name>A0A392VIA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011158930">
        <property type="protein sequence ID" value="MCI87152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5357" checksum="2FA3BB2B0845B5F5" modified="2018-12-05" version="1" fragment="single">GLKLSYAEKSVTEFAYASGTIRWFERAEWLGAVSNLRRVPLEAQLLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VK54</accession>
    <name>A0A392VK54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011201782">
        <property type="protein sequence ID" value="MCI88764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VK54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2284" checksum="0B88FD2E2A79566B" modified="2018-12-05" version="1" fragment="single">MSLQIFPDDNTMTALGISESI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLC1</accession>
    <name>A0A392VLC1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011186259">
        <property type="protein sequence ID" value="MCI88179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLC1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="5203" checksum="F87704FE75D0DB0F" modified="2018-12-05" version="1" fragment="single">MFKREFWVKYFPGDVRNRKVVEFLELKQGNMTVAEYAAKFESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQD0</accession>
    <name>A0A392VQD0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">AML1</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011249193">
        <property type="protein sequence ID" value="MCI90604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5070" checksum="247FBEAB20C4D98F" modified="2018-12-05" version="1" fragment="single">MFHISTQHNGSEMLSILSLQEPFPIGANVRVRPGKSRNAGYEENR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUM5</accession>
    <name>A0A392VUM5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011250889">
        <property type="protein sequence ID" value="MCI90671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUM5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3602" checksum="A39BED5B08BF5237" modified="2018-12-05" version="1" fragment="single">APCIESLPDKGGQAAGPVDHSNSGTSTSVWMKKSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUQ1</accession>
    <name>A0A392VUQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011278691">
        <property type="protein sequence ID" value="MCI91657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6741" checksum="39B1FD80BD0BA5AF" modified="2018-12-05" version="1" fragment="single">MELMANAMAQEAVSRTADRVAREARRGGEDELRLERFMNNKPPIFKGGYDPDGAQSWIEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXY1</accession>
    <name>A0A392VXY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">L-allo-threonine aldolase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine aldolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011324067">
        <property type="protein sequence ID" value="MCI93248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008732">
        <property type="term" value="F:L-allo-threonine aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006545">
        <property type="term" value="P:glycine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:L-threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48097:SF15">
        <property type="entry name" value="L-ALLO-THREONINE ALDOLASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48097">
        <property type="entry name" value="L-THREONINE ALDOLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aromatic amino acid beta-eliminating lyase/threonine aldolase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI93248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4883" checksum="E0FAFB157B3AC31C" modified="2018-12-05" version="1" fragment="single">MRVAMANAEVDDDVLGRDPSCVQLEKEMAKITGKEAALFVPSGTMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1C8</accession>
    <name>A0A392W1C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011331522">
        <property type="protein sequence ID" value="MCI93523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6120" checksum="5802F5D32E46AA9C" modified="2018-12-05" version="1" fragment="single">MKVTAIEETQDISSMKVDELVGSLQTFELAANERSEKKTKSIAFVSNADDEELKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9G4</accession>
    <name>A0A392W9G4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011413218">
        <property type="protein sequence ID" value="MCI96382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9G4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2852" checksum="258B7076441626E4" modified="2018-12-05" version="1" fragment="single">EGGQEFNDVTFVDKGAQTVVVECHEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAF2</accession>
    <name>A0A392WAF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397883">
        <property type="protein sequence ID" value="MCI95835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004802">
        <property type="term" value="F:transketolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033247">
        <property type="entry name" value="Transketolase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43522">
        <property type="entry name" value="TRANSKETOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43522:SF17">
        <property type="entry name" value="TRANSKETOLASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transketolase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4135" checksum="F7F9B2AE19B9F92D" modified="2018-12-05" version="1" fragment="single">WGSKTPGHPENFETYGIEVTTGPLGQGIANGVGLALAEKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC94</accession>
    <name>A0A392WC94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011442501">
        <property type="protein sequence ID" value="MCI97419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4196" checksum="1F1A86DE6E99F69F" modified="2018-12-05" version="1" fragment="single">MGRCNRQDTSSSVTVISPAGIWKVEVSACHLSANALIRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N143</accession>
    <name>A0A392N143_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the PPR family. PCMP-E subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024987">
        <property type="protein sequence ID" value="MCH93461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000031">
        <property type="entry name" value="Pentatricopeptide repeat-containing protein mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000412">
        <property type="entry name" value="Putative pentatricopeptide repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF481">
        <property type="entry name" value="TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="143"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="243"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00061659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH93461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="298" mass="32919" checksum="760E03859AEFED3F" modified="2018-12-05" version="1" fragment="single">MICRKDLISWNSILDAFGEKRHHSRFLSLLHLMLKLEIRPDSVTILSIIHFCSSLLRVEKVKEIHSYSIRTGSLLSATAPPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLFSKLQARGMKPDVVTMMSLLPVCTQMASVHLLSQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGCAYKIFQSSADKDLVMFTSMIGGYAMHGMSEEALGTFSHMLNLGIKPDHVIFTSILSACSHAGRVDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND50</accession>
    <name>A0A392ND50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein FAM135B-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035830">
        <property type="protein sequence ID" value="MCH97750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ND50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022122">
        <property type="entry name" value="DUF3657"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12394">
        <property type="entry name" value="DUF3657"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH97750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15134" checksum="3E63C378FA0E749A" modified="2018-12-05" version="1" fragment="single">PEVGSDNLCRVWMIDDTDNSFSTPPFQIKYARQDVFLSLMISFYLAYGECEGESSAVILKFELMHAPMTATGSDLQGSLDACSASFHEYKIPPKALRGLHSYCPVHFDAFHSVVVDTSVHISLLKASYRTIPQKVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NH32</accession>
    <name>A0A392NH32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039305">
        <property type="protein sequence ID" value="MCH99072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NH32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15385" checksum="C581D1F628FDD035" modified="2018-12-05" version="1" fragment="single">YLKHDKTLLACLNLLKKYSNDVESSQTERDELVTVATMNRIDESHNNVFTAEVSKDSLVTNNRSAVDTIDTNNSQAILAQTKDVNANVSDVQGAPLQQVVVDDMEKINKLGRIEPVKVRKASNLSRRLYRNGKRNNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKA2</accession>
    <name>A0A392NKA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Lysine histidine transporter 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041401">
        <property type="protein sequence ID" value="MCH99813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NKA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013057">
        <property type="entry name" value="AA_transpt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01490">
        <property type="entry name" value="Aa_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Amino acid transporter transmembrane" evidence="9">
        <location>
            <begin position="39"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="19"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCH99813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7619" checksum="EB700286DDB8E2F3" modified="2018-12-05" version="1" fragment="single">MSGGNVNQNVQQDVEREGGAANNNNQQNLENWLPVSASRKAKWWYSTFHNVTAMVGAGVLSLPYALSQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUD3</accession>
    <name>A0A392NUD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate transporter 3.1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048087">
        <property type="protein sequence ID" value="MCI02095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001902">
        <property type="entry name" value="SLC26A/SulP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11814">
        <property type="entry name" value="SULFATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="SLC26A/SulP transporter" evidence="6">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI02095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17640" checksum="768651186AC2DC96" modified="2018-12-05" version="1" fragment="single">EGIAVGRSFAMYKNYNIDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMSIAVMLTLLFLTPLFYYTPLVVLSAIIVSAMLGLIDYEAAIHLWKVDKFDFVVCISAYIGVVFGSVEIGLVIAYFGYCCLLQDQEHLFWETFQTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXS2</accession>
    <name>A0A392NXS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054010">
        <property type="protein sequence ID" value="MCI04009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10329" checksum="BECED5B8B92DEFAE" modified="2018-12-05" version="1" fragment="single">SLSSTSSEFEEDDEEEEKQDENKAGFGFDDSDSYDDGRIVSVYGADEKQSVSPVGENASEDLAVGIWDTRLRHRIPAVIAEWSPGINLSGKSGCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYT5</accession>
    <name>A0A392NYT5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="19 20">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">cv. 10/8</strain>
            <tissue evidence="19">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. CDPK subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010055363">
        <property type="protein sequence ID" value="MCI04420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000004">
        <property type="entry name" value="Calcium-dependent protein kinase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050205">
        <property type="entry name" value="CDPK_Ser/Thr_kinases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24349">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 15 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0106">Calcium</keyword>
    <keyword evidence="9 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 15 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 16" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="18">
        <location>
            <begin position="73"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="17">
        <location>
            <begin position="21"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="17">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="17">
        <location>
            <begin position="40"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00024334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU000304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="MCI04420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="242" mass="27125" checksum="896294D6BECC7B09" modified="2018-12-05" version="1">MGLGLFKAFFCCTTNQDIPIVSSDSESSPRHSSGYGYKQPMLPISPKKSPSSTSNPQIGQILGKPYVVITQMYEMKKELGRGQSGVTYLCTEKRTGREYACKSISRAKLLSDQEIEDVRREVMILQHLSGQPNIVEFRGAYEDKQNVYLVMEVCKGGELFDRIIAKGNYTEREAATIMRQIVNVVHVCHFMGVMHRDLKPENFLLASQDENATVKATDFGLSIFLEEGTYLLVITTSTLFGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYZ6</accession>
    <name>A0A392NYZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase CWC27</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055059">
        <property type="protein sequence ID" value="MCI04336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7354" checksum="ABAF32DABF0C6A12" modified="2018-12-05" version="1" fragment="single">MQLSVRDALNSKKEEPQKDSGADKLAHLDSSDDDEADFDSRMRMQILKKRKELDDLPPKPKLQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2W1</accession>
    <name>A0A392P2W1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein RCC2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060617">
        <property type="protein sequence ID" value="MCI06074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031267">
        <property type="term" value="F:small GTPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="entry name" value="Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028641">
        <property type="entry name" value="RCC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46207">
        <property type="entry name" value="PROTEIN RCC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46207:SF1">
        <property type="entry name" value="PROTEIN RCC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="RCC1/BLIP-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8200" checksum="2789C5ABE37B6771" modified="2018-12-05" version="1" fragment="single">IEPSPVRCVVSEVKYATCGGDFTVWLSSVDGASIQTAGLPQYGQLGHGTDNEVWLRKMFEFDGLCCPKMCMSSHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4G7</accession>
    <name>A0A392P4G7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059502">
        <property type="protein sequence ID" value="MCI05715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4G7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4184" checksum="392486B38B5DCA15" modified="2018-12-05" version="1" fragment="single">MDFTKTNLDNNAHRWKQRVAVTGTCNQIVEFKKSTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PA81</accession>
    <name>A0A392PA81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069724">
        <property type="protein sequence ID" value="MCI08642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PA81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7110" checksum="E7C32D9A2B1A6CD8" modified="2018-12-05" version="1" fragment="single">NKVQSSSSSALLLHSTDFHGPDLRRHPLRRRKTFCGSIAVGASPDLPNHYSDFNSKGERWSWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGI9</accession>
    <name>A0A392PGI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076205">
        <property type="protein sequence ID" value="MCI10426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052361">
        <property type="entry name" value="F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31790">
        <property type="entry name" value="OS02G0783600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31790:SF81">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="22471" checksum="C407246CCCC9110D" modified="2018-12-05" version="1" fragment="single">MSMLRCQSNPSPSANIPDDLIVEILSMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAVSCDKDSEQNGDNSFIPFSINDLLENRLINLPSDPHYRLIDKNCREVVGSCNGLVCLLRYSLAKNGHKEPGFRLWNPATRTISSKLWYFPDDRYHLKFRKWKFMFGYENSTDTYKVVALHLVNTLTTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIF7</accession>
    <name>A0A392PIF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Xylulose kinase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077173">
        <property type="protein sequence ID" value="MCI10675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="16704" checksum="685A06EC500457D5" modified="2018-12-05" version="1">MQDGPLMGDKLWSLYRLLVPIGYSIQLLVTSLGSTLAIKLLSNTRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISLLDYYPLPKAGERFPIADPELAPRYRILSAFCRNSQLSEFNPLIKLACKESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PIZ4</accession>
    <name>A0A392PIZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081360">
        <property type="protein sequence ID" value="MCI11752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PIZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="5"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7398" checksum="B94CA8463ACB66DE" modified="2018-12-05" version="1" fragment="single">GASTPNVSSCGGIFKNSNADFLCTFAYGTGNTSAFIAELCGFMTAIEIAVSRGWSNLWIELDSRLVVMAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PP56</accession>
    <name>A0A392PP56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085155">
        <property type="protein sequence ID" value="MCI12685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PP56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4097" checksum="E86D2637AA838A3A" modified="2018-12-05" version="1" fragment="single">RDDGHNVRLSGGCGPEERRRGGGAVEGKVWTFGENVKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR85</accession>
    <name>A0A392PR85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010090356">
        <property type="protein sequence ID" value="MCI13960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13842" checksum="254AF1E837274A47" modified="2018-12-05" version="1">MRLRRLPHQQYCGRNCGCGPEFKTLNGSIRRLPIPVDGGGSLHRTGHMVFVRVHRLVQQQVVNQQLIMETTIQLALIVLQRGIVFVGSFPRAKLIMILLRLILLERASPMDSPSLDLASDWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTZ7</accession>
    <name>A0A392PTZ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097015">
        <property type="protein sequence ID" value="MCI15563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTZ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045874">
        <property type="entry name" value="LRK10/LRL21-25-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27009">
        <property type="entry name" value="RUST RESISTANCE KINASE LR10-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI15563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="20991" checksum="E5A59647787943C2" modified="2018-12-05" version="1" fragment="single">MRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPTDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDRKSQVYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPSDRPLMNKVVELLEGDVESLVMPPKPFQTPKGMPVQGIAQFGNLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUR6</accession>
    <name>A0A392PUR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein phosphatase 6 regulatory subunit 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094832">
        <property type="protein sequence ID" value="MCI15056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8562" checksum="D9065A9547E30ADA" modified="2018-12-05" version="1" fragment="single">DVYFDDESAEVVISSLRLGEEPESGSLFTNSNWFAFEEDRDRVANERSTGSLASPSPNAEEGVKNGSGDYNVPAGEDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUZ6</accession>
    <name>A0A392PUZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093633">
        <property type="protein sequence ID" value="MCI14745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="123" mass="13761" checksum="5BC0A077744EE63F" modified="2018-12-05" version="1">MTKERLKNKIHGGLKCGGGIAQAERHYQKFVVALMSAESCLMNIPLSHSNLVVSSTKIQFGKPTRAIQFIQKFVDSRNWKAIFASYCIQSSIINTKSPSAVFFAHQQNRRRKCTGTVLNEAIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYQ8</accession>
    <name>A0A392PYQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101620">
        <property type="protein sequence ID" value="MCI16600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108:SF9">
        <property type="entry name" value="REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="92"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="182" mass="20458" checksum="6B0FB2D914E4FCE1" modified="2018-12-05" version="1" fragment="single">MSTLHGPYYEKMIGSISSNFSDLITIGERVEEGIKSGKIQGTSNARAGEKKSSDYNPKEEEGEANAVVIGLSQPPHQMHHVLSPQQQLVIPQQNHQQQAGYQQRNQPGPKCDRKRRNMHYDRLPMPYGQILPYLVQKGMVELKPLHPVEPPYPLNIDVNAKCDYHAGAPGHDIENCKGFKHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-10-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1A8</accession>
    <name>A0A392Q1A8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">L-idonate 5-dehydrogenase</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106512">
        <property type="protein sequence ID" value="MCI17672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1A8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43161">
        <property type="entry name" value="SORBITOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43161:SF9">
        <property type="entry name" value="SORBITOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Alcohol dehydrogenase-like N-terminal" evidence="6">
        <location>
            <begin position="4"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI17672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11644" checksum="0A678C4E6FC23485" modified="2018-12-05" version="1" fragment="single">MFEGPHDVRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSQVQTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPEMKFFATPPVHGSLANQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1W0</accession>
    <name>A0A392Q1W0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109926">
        <property type="protein sequence ID" value="MCI18393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1W0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8472" checksum="E1F62BFD5329E093" modified="2018-12-05" version="1" fragment="single">AYPTVSCLGLIGTTPALLVRPTVGLMPTTELKLEGHKMEPSVSVPSDTVTKFAATDIADPLLEPHGLPNVYGFCTTQVYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q448</accession>
    <name>A0A392Q448_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">phenylalanine ammonia-lyase</fullName>
            <ecNumber evidence="5">4.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-phenylalanine = (E)-cinnamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21384"/>
            <dbReference type="ChEBI" id="CHEBI:15669"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="EC" id="4.3.1.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PAL/histidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.24" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010110426">
        <property type="protein sequence ID" value="MCI18500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q448"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045548">
        <property type="term" value="F:phenylalanine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006559">
        <property type="term" value="P:L-phenylalanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="entry name" value="Fumarase/aspartase (N-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001106">
        <property type="entry name" value="Aromatic_Lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10362">
        <property type="entry name" value="HISTIDINE AMMONIA-LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00221">
        <property type="entry name" value="Lyase_aromatic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="L-aspartase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0585">Phenylalanine catabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI18500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="10959" checksum="EAFA604BF8567BAC" modified="2018-12-05" version="1" fragment="single">MAADCMRGSHLDEVKQMVEEYRKPVVPLGGKGLTISQVAAIATHNTGVTVKLDEETRAAVKASSDWVVESLNNGTDSYGVTTGFGATSHRRTKQGGALQNELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9F2</accession>
    <name>A0A392Q9F2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120106">
        <property type="protein sequence ID" value="MCI20489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q9F2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF533">
        <property type="entry name" value="DYW DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="11485" checksum="02AC509C3E5A9DA6" modified="2018-12-05" version="1" fragment="single">MSCNKVVLSDTMKNMISPIQSVVPSPIFGGLTSVSISSLTTHGRPNEAIKVYASLRACGIKPHSSVFLAVAKACAVSGDALRVKEVHDDATRLGVMSDVFIANALIHAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QAF3</accession>
    <name>A0A392QAF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123387">
        <property type="protein sequence ID" value="MCI21124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QAF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32011">
        <property type="entry name" value="OS08G0472400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32011:SF2">
        <property type="entry name" value="OS08G0472400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="14008" checksum="82087D77BA2BAF03" modified="2018-12-05" version="1" fragment="single">MVDVERRLIGLNPAHLAGLKRLSVRAASISTATTTTVRNGLLSFSPLADKIITNLRNSGIQVQQGLSDAEFARIEAEFGFIFPPDLRAILTAGLPIGAGFPDWRATGTRLHLRASLDLPMAAISFQIARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE64</accession>
    <name>A0A392QE64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130590">
        <property type="protein sequence ID" value="MCI22454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8102" checksum="859807C1520CD2E8" modified="2018-12-05" version="1" fragment="single">MDVKSAFLNGPLDEEVYVSQPPGFTKEGKEEMVYRLNKALYGLKQALRAWNKRIDGFLTQVGFKKSVVEHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QIY5</accession>
    <name>A0A392QIY5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative zinc finger CCCH domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138219">
        <property type="protein sequence ID" value="MCI23854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46156">
        <property type="entry name" value="CCCH ZINGC FINGER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46156:SF1">
        <property type="entry name" value="ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="12132" checksum="87C1F9EE5F576C52" modified="2018-12-05" version="1" fragment="single">KRKRSDDQNSGRGRYFGSIPADVSEPWIMVAPKFPQQDEEHESELTDYISLDAYEEEEDAADQSFELSTFCDNDTTDLXLDTSDELINPVSIIXKFGLQSQSRSLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLZ8</accession>
    <name>A0A392QLZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine-protein kinase-like protein ACR4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010142138">
        <property type="protein sequence ID" value="MCI24556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:000477">
        <property type="entry name" value="Receptor protein kinase CRINKLY4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46146:SF23">
        <property type="entry name" value="PROTEIN KINASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46146">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI24556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="154" mass="17405" checksum="E9E85073AD02DAEE" modified="2018-12-05" version="1" fragment="single">YCEEGGERLLVYEYMAHGSLHQHLHGKSKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMY8</accession>
    <name>A0A392QMY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lipid transfer protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010144176">
        <property type="protein sequence ID" value="MCI24896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QMY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.110.10">
        <property type="entry name" value="Plant lipid-transfer and hydrophobic proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036312">
        <property type="entry name" value="Bifun_inhib/LTP/seed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016140">
        <property type="entry name" value="Bifunc_inhib/LTP/seed_store"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33286">
        <property type="entry name" value="BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33286:SF1">
        <property type="entry name" value="OS01G0800600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14368">
        <property type="entry name" value="LTP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47699">
        <property type="entry name" value="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017437898" evidence="1">
        <location>
            <begin position="25"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Bifunctional inhibitor/plant lipid transfer protein/seed storage helical" evidence="2">
        <location>
            <begin position="23"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI24896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9197" checksum="1523879EFE8C1F74" modified="2018-12-05" version="1" fragment="single">MATRCIGFATLVLTASILMLGIYAQSECGGDSNVINTQCRSFIEKDGPKIPPSEPCCEAMKGVDVSCYCKYVIPRIENMISVENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNK8</accession>
    <name>A0A392QNK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010147768">
        <property type="protein sequence ID" value="MCI25539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7903" checksum="135A59C42FBB2B83" modified="2018-12-05" version="1" fragment="single">ESNRTPKLDIGMFVTLHLLSSLSLTFLSQFLGLQFHLHSHMYPFGNNTVLGFCLKELKNWFNLRSFSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QPN8</accession>
    <name>A0A392QPN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010146017">
        <property type="protein sequence ID" value="MCI25235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QPN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3165" checksum="9A9ABCD10C8375E5" modified="2018-12-05" version="1">MENWTKGGAEGETPLVAPPPVDLHVDEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQL5</accession>
    <name>A0A392QQL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetolactate synthase small subunit 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010152286">
        <property type="protein sequence ID" value="MCI26277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="6907" checksum="2A48B0E06B0A2748" modified="2018-12-05" version="1">MGASAPFWRYSAASYPDLEGKTAINALVGAKSTNPVDKTDVPVGTSNTVDISANDFITDHPSPLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRT9</accession>
    <name>A0A392QRT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156586">
        <property type="protein sequence ID" value="MCI26978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000124">
        <property type="term" value="C:SAGA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024738">
        <property type="entry name" value="Hfi1/Tada1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21277">
        <property type="entry name" value="TRANSCRIPTIONAL ADAPTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21277:SF29">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11425" checksum="F204308ECC44BBA8" modified="2018-12-05" version="1">METEGFKVSADAVNVLNNALNVYLKRLIKPCLDLATSKSVKKLSSQIQPGLNELPRNRCMQKLIGPASASISDFKTAMELNPTILGEDWSLHFERVCFLASEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUY2</accession>
    <name>A0A392QUY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010157104">
        <property type="protein sequence ID" value="MCI27055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3956" checksum="BA608CC83814CDFC" modified="2018-12-05" version="1" fragment="single">GSAPSCHLYGNLTSLLDRIQLTPPISVVWISLSLLCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QV65</accession>
    <name>A0A392QV65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164585">
        <property type="protein sequence ID" value="MCI28261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QV65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017396407" evidence="1">
        <location>
            <begin position="22"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7688" checksum="C92D87B497AE9DA6" modified="2018-12-05" version="1" fragment="single">VLGMVCWLMVDGSILFRIASFVPPGCPLVDIPGVDAPFCCGPPYFRNPRDVDWLTITSFEDWGIWGGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1M3</accession>
    <name>A0A392R1M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosome-binding factor PSRP1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010176195">
        <property type="protein sequence ID" value="MCI29982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043024">
        <property type="term" value="F:ribosomal small subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045900">
        <property type="term" value="P:negative regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.50">
        <property type="entry name" value="Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050574">
        <property type="entry name" value="HPF/YfiA_ribosome-assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032528">
        <property type="entry name" value="Ribosom_S30AE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038416">
        <property type="entry name" value="Ribosom_S30AE_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33231">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33231:SF1">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16321">
        <property type="entry name" value="Ribosom_S30AE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma 54 modulation/S30EA ribosomal protein C-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4554" checksum="EEB6BCEB1955B4D3" modified="2018-12-05" version="1" fragment="single">VVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEETGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1R6</accession>
    <name>A0A392R1R6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010177728">
        <property type="protein sequence ID" value="MCI30189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1R6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF52">
        <property type="entry name" value="OS04G0603800 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="2">
        <location>
            <begin position="63"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="19"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI30189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="18341" checksum="E81954E0A130E72C" modified="2018-12-05" version="1" fragment="single">LYGRKPPTLVHYTPGTSKIESLDELLTQKTEVLKLLKANLAKAQNRMTIQANRHRQDKSFEVGQWVYLKLQPYRQQSVQHRTSHKLAKRFYGPFKILKKIGKVAYELDLPVASRVHPVFHVSLLKPCQGEPTTQIAPIADLSTYPPIVLVPSAIRNHRISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4C0</accession>
    <name>A0A392R4C0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pectin acetylesterase</fullName>
            <ecNumber evidence="6">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Secreted</location>
            <location evidence="2 6">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the pectinacetylesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="LXQA010184500">
        <property type="protein sequence ID" value="MCI31079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4C0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009505">
        <property type="term" value="C:plant-type cell wall"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052793">
        <property type="term" value="F:pectin acetylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004963">
        <property type="entry name" value="PAE/NOTUM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562">
        <property type="entry name" value="NOTUM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21562:SF115">
        <property type="entry name" value="PECTIN ACETYLESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03283">
        <property type="entry name" value="PAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0134">Cell wall</keyword>
    <keyword evidence="5 6" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0964">Secreted</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI31079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7097" checksum="20AAE556F0ABACCE" modified="2018-12-05" version="1" fragment="single">MKNADQALLSGCSAGGLASILHCDEFRSLLPKSTKVKCLSDAGFFLDATDVSGGHTLRNLFGGVVNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6F5</accession>
    <name>A0A392R6F5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010190321">
        <property type="protein sequence ID" value="MCI31817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6F5"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6299" checksum="F5D77FFAE2386AC6" modified="2018-12-05" version="1" fragment="single">MGDIRLNRVDQGQTKIKNVPIAVTPEGFWCCPSPVVFQKSHKPQNPLNKTKPSSSPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8M3</accession>
    <name>A0A392R8M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010193452">
        <property type="protein sequence ID" value="MCI32206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11801" checksum="7779B2ECF3EE232F" modified="2018-12-05" version="1">MKAVEFDGVEFHGRVLTVKLDDGKKWREKMLEREKWLRGNDDKEYKSTWHEERDSSRNEFQKVLETEPENWQAVVRAFERVKKVDHLNLYTGHDTYM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCY8</accession>
    <name>A0A392RCY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010209321">
        <property type="protein sequence ID" value="MCI34002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9779" checksum="8EF1BC197F68BF65" modified="2018-12-05" version="1" fragment="single">VLLGHHVTPRRKILGTPTLKESTPRTTSRSPFLLRRVWGGICLVTFGGGTTPFLGIWMEMRAVSSGVFLFDPLEEGSSTTSCESGSVTVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RM51</accession>
    <name>A0A392RM51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010238307">
        <property type="protein sequence ID" value="MCI36870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RM51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10289" checksum="F191D0C747F01181" modified="2018-12-05" version="1" fragment="single">METTSKDGDKGKQPTKVTASGARRKNAAENPPKKRSRKHPAHPEAAHPEHHQPDDMEEGDSDDDIVCDMEEKMEREGDAAPVPIRRPTWLNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RP08</accession>
    <name>A0A392RP08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Metalloendoproteinase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="6">Can bind about 5 Ca(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010243044">
        <property type="protein sequence ID" value="MCI37295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RP08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031012">
        <property type="term" value="C:extracellular matrix"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030574">
        <property type="term" value="P:collagen catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030198">
        <property type="term" value="P:extracellular matrix organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001818">
        <property type="entry name" value="Pept_M10_metallopeptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021190">
        <property type="entry name" value="Pept_M10A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006026">
        <property type="entry name" value="Peptidase_Metallo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201">
        <property type="entry name" value="MATRIX METALLOPROTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10201:SF249">
        <property type="entry name" value="METALLOENDOPROTEINASE 1-MMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00413">
        <property type="entry name" value="Peptidase_M10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00138">
        <property type="entry name" value="MATRIXIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00235">
        <property type="entry name" value="ZnMc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0106">Calcium</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase metallopeptidase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR621190-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR621190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI37295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14098" checksum="669DCB9A33835079" modified="2018-12-05" version="1" fragment="single">MTLTYAFSPDYTIDTLSLSEIRTVFERSFKRWASVIPVSFHETEKYQSADIKIGFYLGDHGDGEPFDGVLGVLAHAFSPQNGRFHLDAAENWAVDFDHDDSKVAVDLESVATHEIGHVLGLGHSSIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQC8</accession>
    <name>A0A392RQC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010248119">
        <property type="protein sequence ID" value="MCI37766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6388" checksum="A65B4C2F0B239A86" modified="2018-12-05" version="1" fragment="single">GEYGSGNLADSKEGEQNVRKGSLEEAKKGGSFKQALLDGGGQLGIKSQLRVVDSGGVVEVGPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSP2</accession>
    <name>A0A392RSP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010257570">
        <property type="protein sequence ID" value="MCI38605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13782" checksum="F45ADF1F91143AEC" modified="2018-12-05" version="1" fragment="single">MVLEELQQSFVGVLALETEVSRIRTTLYMEGRQHISVTSMGGKLILLFSPRKGKLEAMVKAKEDWLCYYFKDVKPWSSDAFNDRREVWVKVLGVPLHVWSESFFKQVGARFGEFVDFDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTM7</accession>
    <name>A0A392RTM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010261857">
        <property type="protein sequence ID" value="MCI38955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13411" checksum="07D3C55EC2A01B35" modified="2018-12-05" version="1" fragment="single">EASQHVDMLVDKIVSGMEDEDCGDPQAGMEHQRSHPSSIVPEEDRPLNVVLQQHPGSPVSEHPLDVSGLWTSPLREGQGRSRERVGSPQSLKGDSVVSSTARAPRHRDRSQSCPPRAKGSVMSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUS4</accession>
    <name>A0A392RUS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010273319">
        <property type="protein sequence ID" value="MCI39907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5199" checksum="D8BDCFB6CC7A7233" modified="2018-12-05" version="1" fragment="single">MKSVNAALALENSNLHQIVNGVVETVVRNEFGTLGDTIKEMLDENQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXP0</accession>
    <name>A0A392RXP0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010291909">
        <property type="protein sequence ID" value="MCI41401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXP0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4776" checksum="6E17FBCBB4BBE103" modified="2018-12-05" version="1" fragment="single">MIYGRLSEWNCRQDHDFVGLSEAADQAGDLWIAQFECLEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZV8</accession>
    <name>A0A392RZV8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301035">
        <property type="protein sequence ID" value="MCI42153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZV8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6447" checksum="3452274BEA9376CA" modified="2018-12-05" version="1">MLWKRIMRAEGTKCKTTNNKDIGHSRSHSGRDITENHTINNRGMKIGLIPMTGVSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S058</accession>
    <name>A0A392S058_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010302240">
        <property type="protein sequence ID" value="MCI42261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S058"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8980" checksum="67B1CCF2E3104BBD" modified="2018-12-05" version="1" fragment="single">MCAQEELIAVSFSEEETVDSRIQTRENDLKPLLKRKRDLQDGIQNDVAKLLGKRHTLVRLQAKQKDLGEELSKIMEDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0M3</accession>
    <name>A0A392S0M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010297574">
        <property type="protein sequence ID" value="MCI41884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="6471" checksum="985770D35F3E50AC" modified="2018-12-05" version="1" fragment="single">GAGASSTGAVTGVGLGAEAGVTGGAEAGGGRCNSGGCSSWNCESSGGIMPDPWTSSAKTRVTRLFLCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S318</accession>
    <name>A0A392S318_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010302306">
        <property type="protein sequence ID" value="MCI42266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S318"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10786" checksum="305EC1C5AE78C30B" modified="2018-12-05" version="1" fragment="single">MRFNPEKCTFGELKLIPTNAKPPSSCLRPTTKNPSKKNAHPIILHRSKICSTRTSLFQIPKERGCVRMDRGVRTDPSALKKALSEPSVLSRPNDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8S9</accession>
    <name>A0A392S8S9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010328268">
        <property type="protein sequence ID" value="MCI44266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8S9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4738" checksum="AD3E0D4B4D893DA6" modified="2018-12-05" version="1" fragment="single">MVGGGGKGVVVDGWDGMSKEQEGESWGKDEGERKRICKLSKITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH70</accession>
    <name>A0A392SH70_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010368979">
        <property type="protein sequence ID" value="MCI47206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8544" checksum="96010E0BE7E7A03F" modified="2018-12-05" version="1" fragment="single">MDKFVVVFIDDILIYSKSEEEHKDHLRITFEGIAVDPAMVEAVLQWSTPESATEIRSFLGLAGYYRRFIEGFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHW1</accession>
    <name>A0A392SHW1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010383397">
        <property type="protein sequence ID" value="MCI48229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHW1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9641" checksum="B53BBDCED2D7AA0F" modified="2018-12-05" version="1" fragment="single">MVTWCLWQNRNSWVWNEVKNTANEVALRAVHMYEEWLSINEVQQQNSNTVSVSAQIRRAATAESNSQAIQHVTAQIRWQKPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SI68</accession>
    <name>A0A392SI68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010388184">
        <property type="protein sequence ID" value="MCI48561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SI68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7707" checksum="3C8268A413FBE85B" modified="2018-12-05" version="1" fragment="single">SPSISVCKSARHSGTDLSALCPLLGSGVDSRAERARCYLFFVRCVWLHDVVFPDITTVHEASAARRSTEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SL16</accession>
    <name>A0A392SL16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010393084">
        <property type="protein sequence ID" value="MCI48894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SL16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5659" checksum="754B9B5DAB6E1E9E" modified="2018-12-05" version="1">MWPLPAIIDYGSATVDNCATQSATVLLRFDSFVAEPTPECIPFLHLNPNAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMF1</accession>
    <name>A0A392SMF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010407636">
        <property type="protein sequence ID" value="MCI49849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10074" checksum="1129DFDF124FECF2" modified="2018-12-05" version="1" fragment="single">MVDICPWPCMVSPVPAKPSPSASIRSFAQVLNDACDVKISQLHVPAIRGDYLCIKITQHEYEKGLADCKKNLHGRLVMNKGDRPLTARELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNE5</accession>
    <name>A0A392SNE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010401378">
        <property type="protein sequence ID" value="MCI49450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10214" checksum="41BD0242ED116A9B" modified="2018-12-05" version="1" fragment="single">MADVNNNNIHEHVTENNLQPEYGQQYPQDGLFTSVTGEEGEQVHEPYVPSDPLVIAPVPPGAPMETVMAALDNAINRQGDFIRDQNQRLMAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNR1</accession>
    <name>A0A392SNR1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010404578">
        <property type="protein sequence ID" value="MCI49655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11509" checksum="29BD3D7756228B7C" modified="2018-12-05" version="1" fragment="single">SKKLTSRFIGPYQILERTGKVAYRITLPPSLSNLHDVFHVSQWRKYVADPSHVIEADDVQVRDNLTVETIPLRIEGREAKMLRNKEIASVKVVWGGPAGENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUH3</accession>
    <name>A0A392SUH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010447936">
        <property type="protein sequence ID" value="MCI52481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5619" checksum="8763AE5DBE5F99C4" modified="2018-12-05" version="1" fragment="single">MWRGAPLKKGSTQFGSGGCALRMMVWRGAPLKNSKRRCVMATCALRRTYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1W7</accession>
    <name>A0A392T1W7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010474994">
        <property type="protein sequence ID" value="MCI54150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1W7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="2047" checksum="778BF35404D12F62" modified="2018-12-05" version="1" fragment="single">SINDLDIIVADPEAWTFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T277</accession>
    <name>A0A392T277_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010492719">
        <property type="protein sequence ID" value="MCI55231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T277"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9550" checksum="134E969CD12E8DE5" modified="2018-12-05" version="1" fragment="single">FKRDCPEFKGKGDYAYVVEGLLDEGYENGEALVVSSWEPEESGTLDSGDSRDGGELGGFRVGCFGGVGEVLQTRWRSWWVYFGGNSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAU1</accession>
    <name>A0A392TAU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010530974">
        <property type="protein sequence ID" value="MCI57547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4275" checksum="02B400F3C08881F0" modified="2018-12-05" version="1" fragment="single">MEIVKIRDGVDGIWGGWFGERVLKKVGVGLETLLWTDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDJ6</accession>
    <name>A0A392TDJ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010555156">
        <property type="protein sequence ID" value="MCI58992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDJ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3333" checksum="84C96715D789EB1C" modified="2018-12-05" version="1" fragment="single">HCYEETLVRVVALAKYASCEDAFLTRTRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TE57</accession>
    <name>A0A392TE57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010563766">
        <property type="protein sequence ID" value="MCI59443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TE57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="12"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7755" checksum="E5D5114AEDE0CDA3" modified="2018-12-05" version="1" fragment="single">MKVIDDNLGSIEKKYSATKEKLEKDIKELKAEYERKLEQLAMDKKEKWAKDRKTFTDEIAHLRAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THT6</accession>
    <name>A0A392THT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010567835">
        <property type="protein sequence ID" value="MCI59656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9357" checksum="A9FB429206115706" modified="2018-12-05" version="1" fragment="single">MLKLAADKKTGKKKVKGGPAAILSRSGPGNSSSPVGGQACSSDPKGTPNKRPRQDDSVVDLTDAEPRFTLPNCFGARGFLEKYPPAVADT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ82</accession>
    <name>A0A392TJ82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010578594">
        <property type="protein sequence ID" value="MCI60270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8348" checksum="6A1877A13F38340C" modified="2018-12-05" version="1" fragment="single">MVQPQKAPGCYQINLIETLIKEHQENPPPGIERVLIQSIEQEEEAEDEETNLSVKWLEDPAKIPSRYESLKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQQ4</accession>
    <name>A0A392TQQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010628949">
        <property type="protein sequence ID" value="MCI62984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4508" checksum="C5E47F3DA68BACDB" modified="2018-12-05" version="1" fragment="single">MQELFLWDRKGNEGDGGKATAWWPRTKERSSTVPICSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR78</accession>
    <name>A0A392TR78_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010632340">
        <property type="protein sequence ID" value="MCI63174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR78"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9371" checksum="3F99FF35EC5E37E9" modified="2018-12-05" version="1" fragment="single">DPEHDVGKSVETSGTQEELVENFLPATPVDKTVSNELKETTDVATEGNTHLDESVNPNSSKEKENDPADKTIDDNTMVVDVDNFVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUT9</accession>
    <name>A0A392TUT9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Peptidase A2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010666176">
        <property type="protein sequence ID" value="MCI64923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="85" mass="9308" checksum="0836BDF271BD77FA" modified="2018-12-05" version="1" fragment="single">PLSFYLEELPGGSANAQIPLLVRADVANFDVRRVLVDTGSSVDIMFAHCFQTLQLSEYHLASYVGSDLQGFNGATTKPWGYVDLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVP9</accession>
    <name>A0A392TVP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010672210">
        <property type="protein sequence ID" value="MCI65243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4406" checksum="7F877FEC548E6EA3" modified="2018-12-05" version="1" fragment="single">VEETKGIKVRYFCAVTPLLVILHPAAMRKTLAAPSRRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXV2</accession>
    <name>A0A392TXV2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010673255">
        <property type="protein sequence ID" value="MCI65307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXV2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7431" checksum="FF06B036FAE17F5F" modified="2018-12-05" version="1" fragment="single">MSPTCYDEDSERECDDKTAKRVMAFMGKYDSDSESSDEDVSDGDIAETYKLLYTKWVEACNVVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZ03</accession>
    <name>A0A392TZ03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694750">
        <property type="protein sequence ID" value="MCI66402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZ03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9218" checksum="6E1AEAA11AC0E67A" modified="2018-12-05" version="1" fragment="single">SQPPRRSARLRRPRKAKFEVIVLSSDSSDLDETDEDYAEFLKVYKSEDSYPQVSASSGEEGSQKTVESKPVVVVEVDSDNEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U022</accession>
    <name>A0A392U022_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010702199">
        <property type="protein sequence ID" value="MCI66783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U022"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2674" checksum="4920015883129291" modified="2018-12-05" version="1" fragment="single">PPLDDGAAPDAAGRGDGEDFVEYPIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2E4</accession>
    <name>A0A392U2E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP-dependent zinc metalloprotease FTSH 4 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010720522">
        <property type="protein sequence ID" value="MCI67613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045037">
        <property type="term" value="P:protein import into chloroplast stroma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="entry name" value="Peptidase M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23076:SF37">
        <property type="entry name" value="ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23076">
        <property type="entry name" value="METALLOPROTEASE M41 FTSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="FtsH protease domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M41" evidence="1">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6276" checksum="8CD1BF88FB5A6532" modified="2018-12-05" version="1" fragment="single">MVCQLPDKDPTSYSRKQMLARLDVSMGGRVAEELIFGESGVTSGASSDLAKATALARQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5V6</accession>
    <name>A0A392U5V6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010741910">
        <property type="protein sequence ID" value="MCI68742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5V6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="17" mass="1809" checksum="EAB06E1F56C9F18B" modified="2018-12-05" version="1" fragment="single">MAALRAGWCCAARRVAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U923</accession>
    <name>A0A392U923_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010733162">
        <property type="protein sequence ID" value="MCI68245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U923"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3989" checksum="A6969F89315F8557" modified="2018-12-05" version="1" fragment="single">MRSSGSSGFDKLRCSEEIEEPGNNLQLTSVYKDACH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAD1</accession>
    <name>A0A392UAD1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010776687">
        <property type="protein sequence ID" value="MCI70473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8908" checksum="D2B2ED4FF0B3FD78" modified="2018-12-05" version="1" fragment="single">LDASAGGSLKNRDETQARELILTMAQNEYRAQNDRGAKKKAGILELDAQNAFLAQSKLMTNQMESMLKLMTAAQPQLAQVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAZ0</accession>
    <name>A0A392UAZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrovirus-related pol polyprotein from transposon tnt 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010759541">
        <property type="protein sequence ID" value="MCI69600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013103">
        <property type="entry name" value="RVT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07727">
        <property type="entry name" value="RVT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase Ty1/copia-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6372" checksum="12B6418B0D65057A" modified="2018-12-05" version="1" fragment="single">MDVKMAFIHGDLEEEIYMKQPDGFQLKDKEDHVCRLRKSLYGIIHIEFKNNFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC32</accession>
    <name>A0A392UC32_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010753070">
        <property type="protein sequence ID" value="MCI69285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="3"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI69285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8688" checksum="EA9B2DB17F14AA44" modified="2018-12-05" version="1" fragment="single">MGHEFRELKQGKFTVAEYTQRFNELICYSLDINGALDEKAKMNKYRYGLRGDIAYAVSLQQIKDFGELIQKAYSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UC36</accession>
    <name>A0A392UC36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010789154">
        <property type="protein sequence ID" value="MCI71083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UC36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="56"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8282" checksum="D4A3A298FA6B943E" modified="2018-12-05" version="1" fragment="single">LRQQGIRITALEESIRSKRNGSRSPQQTRPRSKTSPRRPDAHNRRLALEQLQQPNKKCDRTPPREDRVSPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHP4</accession>
    <name>A0A392UHP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010792679">
        <property type="protein sequence ID" value="MCI71245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4383" checksum="FE12F626062119BE" modified="2018-12-05" version="1" fragment="single">MITGPDANIGHPFVITTLCRLQDVPTEEDTDEISSAERPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL04</accession>
    <name>A0A392UL04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010817799">
        <property type="protein sequence ID" value="MCI72425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4159" checksum="136635D82BF2D6D5" modified="2018-12-05" version="1" fragment="single">NMGDDLKKIMEDLGTSKKCKRSLEDLHIKALEAAQDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL55</accession>
    <name>A0A392UL55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832833">
        <property type="protein sequence ID" value="MCI73186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5677" checksum="4A1FCF6B238D463B" modified="2018-12-05" version="1" fragment="single">TDIDICFVEATQPKSYILRRQLHRHRLTTDEGLTAAVERWCFGGQQMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL99</accession>
    <name>A0A392UL99_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">OTU-like cysteine protease</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010833943">
        <property type="protein sequence ID" value="MCI73226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL99"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd22744">
        <property type="entry name" value="OTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.80">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8695" checksum="F949CBB90E4C1AA0" modified="2018-12-05" version="1" fragment="single">VIDVAGDGHCGFRAVSGLLDQSVDSYDTIRLELGEELNKNRQGYTSMFGTEKRLNDVEYALTPAGIGYTDKWMMMPDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULQ0</accession>
    <name>A0A392ULQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010863306">
        <property type="protein sequence ID" value="MCI74559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4016" checksum="2052A9679D105CEB" modified="2018-12-05" version="1" fragment="single">MGRFCFNHHCLHRGGGGPPVGAVFAPAKTNILNILRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQE3</accession>
    <name>A0A392UQE3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010892944">
        <property type="protein sequence ID" value="MCI75873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQE3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5701" checksum="A86393419DD836DE" modified="2018-12-05" version="1" fragment="single">LKMADELPQPSTSNPRPDCSWVADEARNTVSVYAERWDDIPEEMFTDISS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR70</accession>
    <name>A0A392UR70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010875636">
        <property type="protein sequence ID" value="MCI75124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8654" checksum="7FD3CEB10761FDF9" modified="2018-12-05" version="1" fragment="single">GKEPIVSGTATADATPKRKRVGKEKVENVVEKKKKKAATSVSDKEKVIKKQRTQKKEAPRAVRKLVIHEEDDEETDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYI3</accession>
    <name>A0A392UYI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010991445">
        <property type="protein sequence ID" value="MCI80253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5229" checksum="8BF6087B3E01EB59" modified="2018-12-05" version="1">MISTEAPFGTPYAPDMNGGSSFRKIPEPPPEMVMPLQFAERIPPTPPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZ75</accession>
    <name>A0A392UZ75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010989354">
        <property type="protein sequence ID" value="MCI80171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZ75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="36"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6381" checksum="7368722B145092EC" modified="2018-12-05" version="1" fragment="single">VMSSTEDEDSDNDPNAEAVAEAPEIGSPNTETNGGTRARSTRTIRASARLQDCELANDNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8Z9</accession>
    <name>A0A392V8Z9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011098465">
        <property type="protein sequence ID" value="MCI84744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8Z9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3248" checksum="A139A59423AF345C" modified="2018-12-05" version="1">MQHKTIPLVALVVLEELEEVVFLILPHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIK4</accession>
    <name>A0A392VIK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011161539">
        <property type="protein sequence ID" value="MCI87252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1893" checksum="9FF604CA5B429773" modified="2018-12-05" version="1" fragment="single">TAIGEVSVILVTFMVAEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VRY9</accession>
    <name>A0A392VRY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011219983">
        <property type="protein sequence ID" value="MCI89465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VRY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4929" checksum="956F1B6B34437308" modified="2018-12-05" version="1" fragment="single">MEETPSPEANGGGMKLQEAINALHNLQAKVNNMEQEREHHETKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWQ0</accession>
    <name>A0A392VWQ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
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            <taxon>Pentapetalae</taxon>
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            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011285138">
        <property type="protein sequence ID" value="MCI91899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWQ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7901" checksum="E02734FCBF890576" modified="2018-12-05" version="1" fragment="single">MLEEEASDVEPRRSTRTRTLPPRLNDSIITRDNEITTEGDLVHLAYIAEAEPVNFEDAVKDEKWLSAMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZV7</accession>
    <name>A0A392VZV7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011292997">
        <property type="protein sequence ID" value="MCI92175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZV7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5581" checksum="F875F8628ABCE796" modified="2018-12-05" version="1" fragment="single">SANTCYKVEVRDKDLEKANLNPEWMEEGVNEEPLESQGPWFEEPAEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2E5</accession>
    <name>A0A392W2E5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011312091">
        <property type="protein sequence ID" value="MCI92840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2E5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6772" checksum="869F192D771E14D2" modified="2018-12-05" version="1" fragment="single">MVINRGKWEEGDWKWQWDWITDLTTTEAAELSDLEGTLQGIKLILIEDDRLRWIADP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4U3</accession>
    <name>A0A392W4U3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011365895">
        <property type="protein sequence ID" value="MCI94773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4U3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2790" checksum="F77AC38EEE768188" modified="2018-12-05" version="1" fragment="single">LSPQMCGFGALILTEVTQFEELISY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8C0</accession>
    <name>A0A392W8C0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011427102">
        <property type="protein sequence ID" value="MCI96884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8C0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5813" checksum="9DB27CB53397E8E8" modified="2018-12-05" version="1" fragment="single">MHKGPTIPSRFTTCFLDFLLPHSGQRDATLKTRNLSSHAFTHETSVEYHPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WDH3</accession>
    <name>A0A392WDH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011422313">
        <property type="protein sequence ID" value="MCI96720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WDH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2423" checksum="CAEEDCBD58A28CEF" modified="2018-12-05" version="1" fragment="single">VDGAVPDAAGREDGEDFVDYPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW51</accession>
    <name>A0A392MW51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclin-dependent kinase F-4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021024">
        <property type="protein sequence ID" value="MCH91721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MW51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11741" checksum="C78867428F73AA99" modified="2018-12-05" version="1" fragment="single">VQRKLDMANEDGIKNKKPVKTTQQSKYQPPGKDSPTSTNKWRTARGVSATADKLANMSMATRRQSLGQTRPPPMKAGVNWNSESGNILLRSSQQIPTGRTFTKKVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1K3</accession>
    <name>A0A392N1K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024094">
        <property type="protein sequence ID" value="MCH93065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N1K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF13">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="17154" checksum="B074FE7BB10D6133" modified="2018-12-05" version="1">MKDSESWLLNAVYASPRENERSDTWNKLYDLAENIQERRLMLGDFNDITCPDEKKGGSQVDFNRCLLFSNWINDFNLVEVDTTCTKFTWRGPKWNGRDCVFKKIYRILCNVAWRLKYHESFAKVLPRVQSDHHPITKIHNHLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3A7</accession>
    <name>A0A392N3A7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026999">
        <property type="protein sequence ID" value="MCH94300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3A7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6951" checksum="3EEA598A8BE2B802" modified="2018-12-05" version="1" fragment="single">EWSLLIAGHCRDSEQSWRHVGYSVWAQLLPLALIRLHLKLLVPLAAELQNCLPRSAFFPSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N3K2</accession>
    <name>A0A392N3K2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024109">
        <property type="protein sequence ID" value="MCH93074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N3K2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8978" checksum="19FB19735584A090" modified="2018-12-05" version="1">MAHQIKKIRDRLNKVAADGTGFGLVRMDAEPRLAVQRREFTHSHVEASSVIGRENDKEAIIKLLMETREVMYATWKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NI71</accession>
    <name>A0A392NI71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium transporter MRS2-3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35.5) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039331">
        <property type="protein sequence ID" value="MCH99083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NI71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.340">
        <property type="entry name" value="Magnesium transport protein CorA, transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039204">
        <property type="entry name" value="MRS2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13890:SF35">
        <property type="entry name" value="MAGNESIUM TRANSPORTER MRS2-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13890">
        <property type="entry name" value="RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH99083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16816" checksum="6E7947EA5E6D3D12" modified="2018-12-05" version="1" fragment="single">MIICRTHPEISIEQGEDLIDHEDYENVGGEISGTQAATVYSSVPNVQELEMLLGAYFVQIGATLNKLSALGEYVEDTEDYINITLDDKQNRILQAGVQIGTASVIVNFFVVVTGIFGMNIHIDIFDAKGNSAFFETVFGCTATCIILYFLAMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIR4</accession>
    <name>A0A392NIR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative Ty-3/Gypsy retrotransposon polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041301">
        <property type="protein sequence ID" value="MCH99777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="17"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Integrase zinc-binding" evidence="8">
        <location>
            <begin position="204"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH99777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="28884" checksum="80947BDC4B6ABF51" modified="2018-12-05" version="1" fragment="single">MQLKQALITXXVLSLPNFSKQFVVETDASGKGIGAVLMQEQHPVAYISKSLGPKQQAMSVYERELLAIVYAVQKWGSYLSHAPFVIRTDQKSIKHMLDQKLNTPFQQVWVAKLLGFDFEIHYKEGSSNLAADALSRKTGAELLPLFLDNAAPDLLTSITASWQQDPHLKAIILDLQSNPQSHPKFSWTRGELRRRGKLVIGSDPAVKESILHWLHDSALGGHSGRDVTASRIKSLFYWKGMAKDILHYVKNCGVCQRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL13</accession>
    <name>A0A392NL13_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pectinesterase</fullName>
            <ecNumber evidence="7">3.1.1.11</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[(1-&gt;4)-alpha-D-galacturonosyl methyl ester](n) + n H2O = [(1-&gt;4)-alpha-D-galacturonosyl](n) + n methanol + n H(+)</text>
            <dbReference type="Rhea" id="RHEA:22380"/>
            <dbReference type="Rhea" id="RHEA-COMP:14570"/>
            <dbReference type="Rhea" id="RHEA-COMP:14573"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17790"/>
            <dbReference type="ChEBI" id="CHEBI:140522"/>
            <dbReference type="ChEBI" id="CHEBI:140523"/>
            <dbReference type="EC" id="3.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.11" evidence="7"/>
    <dbReference type="EMBL" id="LXQA010043644">
        <property type="protein sequence ID" value="MCI00577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00545">
        <property type="reaction ID" value="UER00823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030599">
        <property type="term" value="F:pectinesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042545">
        <property type="term" value="P:cell wall modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045490">
        <property type="term" value="P:pectin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033131">
        <property type="entry name" value="Pectinesterase_Asp_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000070">
        <property type="entry name" value="Pectinesterase_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31707">
        <property type="entry name" value="PECTINESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01095">
        <property type="entry name" value="Pectinesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00503">
        <property type="entry name" value="PECTINESTERASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0063">Aspartyl esterase</keyword>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Pectinesterase catalytic" evidence="8">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI00577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="225" mass="25571" checksum="6EB525D2CB705865" modified="2018-12-05" version="1" fragment="single">FLARDIAFENKAGPEKHQAVALRVNADLTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVLQACNIVSRMPLPNQFTVITAQSRDSPDEDTGISIQNCSILATTDLYENSNNIKSYLGRPWRVYSRTVYIESYIDVFIDPMGWTKWSHDGDKGLDTLYYGEYANYGPGSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSFPYDDWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMM7</accession>
    <name>A0A392NMM7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">14-3-3-like protein D-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 14-3-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043022">
        <property type="protein sequence ID" value="MCI00379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMM7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.190.20">
        <property type="entry name" value="14-3-3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000308">
        <property type="entry name" value="14-3-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036815">
        <property type="entry name" value="14-3-3_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023410">
        <property type="entry name" value="14-3-3_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18860">
        <property type="entry name" value="14-3-3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00244">
        <property type="entry name" value="14-3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00305">
        <property type="entry name" value="1433ZETA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48445">
        <property type="entry name" value="14-3-3 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="14-3-3" evidence="2">
        <location>
            <begin position="2"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI00379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4542" checksum="D72016A17DA80470" modified="2018-12-05" version="1" fragment="single">MEAYQTASTAAEGELPPTHPIRLGLALNFSVFYYEILNSPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NQG1</accession>
    <name>A0A392NQG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010047907">
        <property type="protein sequence ID" value="MCI02033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NQG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7172" checksum="974BA6381FFBFDC9" modified="2018-12-05" version="1">MTVVGGTSIKIVVCFASECSASEVQALPKYTYLGLPCPDLNVGLPCPNLCSGLPLLKYHVQETSSNLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRI1</accession>
    <name>A0A392NRI1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-acetyltransferase ESCO2-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049237">
        <property type="protein sequence ID" value="MCI02477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRI1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061733">
        <property type="term" value="F:protein-lysine-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007064">
        <property type="term" value="P:mitotic sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45884">
        <property type="entry name" value="N-ACETYLTRANSFERASE ECO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45884:SF2">
        <property type="entry name" value="N-ACETYLTRANSFERASE ECO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13096" checksum="DF353B4405B51E92" modified="2018-12-05" version="1" fragment="single">AEMSADISKLKIFLLSQILIRVPDSHSLAAISYCLLSRISTSLVPFGLQFGHGDFLLRSCSTRGVEFTPRNVEDEKSRAQFHKSFTQGIQFRGWSNEIERIISSHKSGRIILVSDIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUM1</accession>
    <name>A0A392NUM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010050204">
        <property type="protein sequence ID" value="MCI02796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI02796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7115" checksum="109B303E6BA6209F" modified="2018-12-05" version="1" fragment="single">MILHSYPIITVSGLNSLTSDGVFVVSATVIGVVADEDWWFDFLCDAVPGRTAWRFKVRVAGIWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NV51</accession>
    <name>A0A392NV51_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">GDSL esterase/lipase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 'GDSL' lipolytic enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052978">
        <property type="protein sequence ID" value="MCI03693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NV51"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="entry name" value="SGNH hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001087">
        <property type="entry name" value="GDSL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051058">
        <property type="entry name" value="GDSL_Est/Lipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45648">
        <property type="entry name" value="GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45648:SF61">
        <property type="entry name" value="GDSL-LIKE LIPASE_ACYLHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00657">
        <property type="entry name" value="Lipase_GDSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="3" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI03693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="19914" checksum="72C0AC94811CB143" modified="2018-12-05" version="1" fragment="single">MVHKLGAESVLPYLSPRLRGEKLLAGANFASAGIGILNDTGVQFLNIIRMYRQLDYFEEYQHRVASIIGPARTKKLINQALVLITVGGNDFVNNYYLVPYSARSRQYSLQDYVKFLIIEYRKLLQRIYDLGARRVIVTGTGPLGCVPAELGMRGTDEGCDAELQRASTLYNPQLQHM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZD2</accession>
    <name>A0A392NZD2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Actin-depolymerizing factor 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the actin-binding proteins ADF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010056590">
        <property type="protein sequence ID" value="MCI04814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZD2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003779">
        <property type="term" value="F:actin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030042">
        <property type="term" value="P:actin filament depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11286">
        <property type="entry name" value="ADF_cofilin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.20.10:FF:000025">
        <property type="entry name" value="Actin-depolymerizing factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.20.10">
        <property type="entry name" value="Severin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002108">
        <property type="entry name" value="ADF-H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029006">
        <property type="entry name" value="ADF-H/Gelsolin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017904">
        <property type="entry name" value="ADF/Cofilin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11913">
        <property type="entry name" value="COFILIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00241">
        <property type="entry name" value="Cofilin_ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00102">
        <property type="entry name" value="ADF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55753">
        <property type="entry name" value="Actin depolymerizing proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51263">
        <property type="entry name" value="ADF_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0009">Actin-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADF-H" evidence="3">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI04814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="130" mass="15234" checksum="5F85D251C4352735" modified="2018-12-05" version="1">MAVNDECKLKFQELKSRRSYRYIVFKIEEQQVVVEKCGEPTDSYEDFMASFPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRVRMKMVYASSKDRFKRELDGIQVELQATDASEMSLDIVKARAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NZS7</accession>
    <name>A0A392NZS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Helicase SKI2W-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058209">
        <property type="protein sequence ID" value="MCI05291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NZS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI05291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9967" checksum="D74AF445856F6437" modified="2018-12-05" version="1" fragment="single">PPAFPKETPESIKKFIEDTYLQPRLDPDDFAPEKVGRQWEFDWFDRAEVPLEPSMPRTVVVPIWEPPFRRPVKETWKPKFEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P982</accession>
    <name>A0A392P982_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">TF-B3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067381">
        <property type="protein sequence ID" value="MCI07990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P982"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.330.10">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI07990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="140" mass="16087" checksum="DC61E6ADF7AED14E" modified="2018-12-05" version="1" fragment="single">NEEVHIGYYGKDLFAILGSKRFGSDDQVPTYHSRCITPGTFLRFQVQLTKETINNPYLSIWNDFEDFLRGSNLNELTVCCDNGSKKVFKVAIHDHPFKSTSIGLDWWAFCRQNGFRFGDVICFKFSLVGDGNNVVRVFKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHJ2</accession>
    <name>A0A392PHJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication protein A1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078286">
        <property type="protein sequence ID" value="MCI10959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516:SF11">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="21"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14302" checksum="C575F65B080E6716" modified="2018-12-05" version="1" fragment="single">MVKXXXXXXXLILPIKVSIESSDTTLAELYAIYQGLILAKDLTVEELVCYSDSLFYINLIKGLIVKYHVHNVLIQDIREIISQSNVTICHTLRERNHYADFLAKLGASSNADLSVHDSPPGGILDLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHJ5</accession>
    <name>A0A392PHJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Homeodomain-like transcriptional regulator-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079484">
        <property type="protein sequence ID" value="MCI11264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044977">
        <property type="entry name" value="RLT1-3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968">
        <property type="entry name" value="HOMEOBOX-DDT DOMAIN PROTEIN RLT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36968:SF8">
        <property type="entry name" value="HOMEOBOX-DDT DOMAIN PROTEIN RLT3 ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11695" checksum="499ABE5B06368B94" modified="2018-12-05" version="1" fragment="single">SVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINEGWLFQCKFPDGVVEETIASFASMPHTSSALALWLVKLDALIAPYLDRIQTQKKQGNGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PI86</accession>
    <name>A0A392PI86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mitogen-activated protein kinase MMK2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">10/8</strain>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081515">
        <property type="protein sequence ID" value="MCI11791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010083185">
        <property type="protein sequence ID" value="MCI12207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="LXQA010116694">
        <property type="protein sequence ID" value="MCI19820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PI86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5691" checksum="EF8C9C848E5F665C" modified="2018-12-05" version="1" fragment="single">MSVESAENNIRGIPTHGGHYLQYNIYGNLFEVSRKYVPPIRPVGRGAYGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJT4</accession>
    <name>A0A392PJT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081390">
        <property type="protein sequence ID" value="MCI11759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI11759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7158" checksum="C6BF288784CAF35C" modified="2018-12-05" version="1">MKNQFFSTFPSKKDKDDVMSTSSQGSMASNMFEGLAGESQPNEPVLEDFWDAMIQSMTKGKTQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PP04</accession>
    <name>A0A392PP04_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pectinesterase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087182">
        <property type="protein sequence ID" value="MCI13180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10452" checksum="D03100BBE6EA9D8E" modified="2018-12-05" version="1" fragment="single">MSSFKAYGKVDESEHXLFEVRRKSRKRITIISLSTIVLVGIVFAAVFGTIAHNNAHNDDNNNDNNDQSLSSSVKAICDVTLYKDSCESSLGPLVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PXP7</accession>
    <name>A0A392PXP7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cullin-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010100160">
        <property type="protein sequence ID" value="MCI16289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PXP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI16289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="145" mass="16676" checksum="DFD039D816D3504E" modified="2018-12-05" version="1" fragment="single">MEESSSSQQQNLPLNSQSEASFFAKGKTMDINYNDFELVIEQPVDFEALKVNGFDVEKFFTDQGWSQFFDILNGPVYPILVKDFWPRCEIFDKIEAEREYALKVAEDVRNNKGKTREQLGLRAFKETEIRSCVSGAEITLTQSNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYG0</accession>
    <name>A0A392PYG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010101126">
        <property type="protein sequence ID" value="MCI16490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20348" checksum="AA2FD5B14487C9B7" modified="2018-12-05" version="1" fragment="single">MASTPIPYSLLTGYRRAGAIMQCIRDLLQHEVQFLLEAPDMVDHFHELMADFKEYAAHLTFHQSAFLSMAIMFDHLLASDYPLFKQVQELTDKKYQDRTKIIDQLVQTRGEITTLETTAGFYPDGPADEDMAGTPSSTSVDMRKHKRDPKADHDSIRALLEKKREVLSSLENQKMSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3J7</accession>
    <name>A0A392Q3J7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110099">
        <property type="protein sequence ID" value="MCI18429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3J7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16509" checksum="3EAA28B96F0B6EAC" modified="2018-12-05" version="1">MLVQQNVVFDRLHQTVMLIELIMCSTDFPSKTTHDNLMKDGAKDKTCEVSDVLGGYKEAVSDVIDKTEPSAKRKCPEPNVEEDLSNTNDVDLNNIDLTISKDDEDDIAFNKKVKECLHRLQNIRELPKPSLPESWTNTAKITNIGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3Z0</accession>
    <name>A0A392Q3Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113318">
        <property type="protein sequence ID" value="MCI19123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="18758" checksum="6AF5CEA8C1C06832" modified="2018-12-05" version="1" fragment="single">VETMKSCHYYKHGDLWKFRTSSGVLLDFNTPDPNEDFDDNEVDDIANQGNENQGHMDVDEENVHQENEEIEGNDWNPWVGGATLGWSDRFNVNNEGWNPWVHNSAHPSQMSWNASSYDPYSHDDGNNMAHMVSMMENMRVQQIQSHTDMLQGFNHINANMRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q527</accession>
    <name>A0A392Q527_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109779">
        <property type="protein sequence ID" value="MCI18355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q527"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5958" checksum="0D883865F4A326D8" modified="2018-12-05" version="1" fragment="single">VKASPDEPWRDSARVLSLGEPSTLPQEQGLSLSEHSSLAKRSNQFSYTLLRVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6Y4</accession>
    <name>A0A392Q6Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117080">
        <property type="protein sequence ID" value="MCI19894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="12968" checksum="477120F009F85F64" modified="2018-12-05" version="1" fragment="single">GATEESNTKLVVDRDAGLQRGGHIEDRGRGHVDGGWGFWGSWGGWKGWIEWTGFGGGPKGKGGSVGNEGSRGGGEKKGGQKQGWERVQIERPKWGGEGRNGENRGTKERPWIPSTWIPNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCV9</accession>
    <name>A0A392QCV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">LRR receptor-like serine/threonine-protein kinase ERECTA-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010126432">
        <property type="protein sequence ID" value="MCI21712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033612">
        <property type="term" value="F:receptor serine/threonine kinase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010286">
        <property type="term" value="P:heat acclimation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001558">
        <property type="term" value="P:regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000383">
        <property type="entry name" value="Leucine-rich repeat receptor protein kinase EMS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050647">
        <property type="entry name" value="Plant_LRR-RLKs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48056:SF6">
        <property type="entry name" value="LRR RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE ERECTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI21712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7568" checksum="3305F3B44F836D5A" modified="2018-12-05" version="1" fragment="single">DVRNNSLTGSIPENIGNCTSFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPPVLGLMQALAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QD62</accession>
    <name>A0A392QD62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mediator of RNA polymerase II transcription subunit 8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010129839">
        <property type="protein sequence ID" value="MCI22313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QD62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038795">
        <property type="entry name" value="MED8_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35552">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35552:SF1">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="11"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="51"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11323" checksum="12CC9DEA89C05C04" modified="2018-12-05" version="1" fragment="single">MTSGSQLLGRSAASPSAATSATSFDNTTASPIPYANSPRSSTNMMNTPSPQQQTPQLQQQQPTTQQQQRQKMMQQLPQQQQQQILAQQQQFRQSTMQGLGQVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QH93</accession>
    <name>A0A392QH93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135377">
        <property type="protein sequence ID" value="MCI23319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QH93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6791" checksum="63482B04F1BA9466" modified="2018-12-05" version="1" fragment="single">MREIVRSHDLEHELNNHNPNALVTDGEIKSCTTVRKQILQFSFPVVHSNVVVIRDIKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJH3</accession>
    <name>A0A392QJH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cationic amino acid transporter 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010139076">
        <property type="protein sequence ID" value="MCI24002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF515">
        <property type="entry name" value="GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9126" checksum="96647E64767D2BE0" modified="2018-12-05" version="1" fragment="single">MICFDPSCEAEYIAAPLSTCQAIWLKNLIEEISQVKCETVTLNVDNVSAINLAKNPIAHGRSKHIELRFHYLREQVNNRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKF3</accession>
    <name>A0A392QKF3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Splicing factor subunit</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010142887">
        <property type="protein sequence ID" value="MCI24678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071011">
        <property type="term" value="C:precatalytic spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005686">
        <property type="term" value="C:U2 snRNP"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000398">
        <property type="term" value="P:mRNA splicing, via spliceosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009846">
        <property type="entry name" value="SF3b5/RDS3-10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20978">
        <property type="entry name" value="SPLICING FACTOR 3B SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20978:SF0">
        <property type="entry name" value="SPLICING FACTOR 3B SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07189">
        <property type="entry name" value="SF3b10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="72" mass="8382" checksum="4CB66379039C0CAB" modified="2018-12-05" version="1" fragment="single">MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYAXXXXXXXXXXXFAIAENESIGRQRYTFMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKS2</accession>
    <name>A0A392QKS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative homeodomain transcription factor superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010141873">
        <property type="protein sequence ID" value="MCI24507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0371">Homeobox</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="11663" checksum="BF179BBA9929BBA5" modified="2018-12-05" version="1" fragment="single">MAAESNTGFHYGDMNSSLNWHAISFQSGAVSSLPEMVPMGNYFGLNNDTSGMMYSGNSSIVNSNSHVISQQGNASGCSLLVDSVPGLKHDAGLAAEWSVDEQYKLEEGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNG7</accession>
    <name>A0A392QNG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149329">
        <property type="protein sequence ID" value="MCI25778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9902" checksum="A1E072C57C82396C" modified="2018-12-05" version="1">MVGCLVFEVETLDIGDYSISARSVAINLGSSRTFTLKETNFIKGRVKVSLSVTATGVDEVVYVVTCSGSFPVRLWRRWGGLRRIRCVIGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRE7</accession>
    <name>A0A392QRE7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010155552">
        <property type="protein sequence ID" value="MCI26828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="165" mass="18527" checksum="4A01FB0CF03A217E" modified="2018-12-05" version="1" fragment="single">MMKALVGNLEVLVLVDCGATHNFVSSKLATXXGWNIEKTAPYWVKIGNGQRIRVQGVCRGVELLLQGLLIKVDCYLFPLEGEDFVLGIEWLEKLGDVKANFKDMTLKLKVQGEKLCLRGDPLLSRREVSAKQIMLELQDPEEMYIIDCRSLSIIEAEQATLPEVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSX1</accession>
    <name>A0A392QSX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156342">
        <property type="protein sequence ID" value="MCI26944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5956" checksum="3C17FDC0E549F6B6" modified="2018-12-05" version="1">MAATREARLRGESTELLVFWDWDTNEHKRYFKQYVDGVAVNGQLREKIVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSZ6</accession>
    <name>A0A392QSZ6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154546">
        <property type="protein sequence ID" value="MCI26646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSZ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16231" checksum="F7FC0F6605A1BB58" modified="2018-12-05" version="1" fragment="single">MFDELEEPLFPFYWTSKPRLIKGDILEKLSEFERETVAFLETFCLMDINELIKREGNIDALDEYLQRIRTITNEKRLQFLAKTRQKRSEPEAVVVDPLSQLAVEDEAAKSRKRKRKTETGRVTVPNPNKGEASTAGGGVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUS9</accession>
    <name>A0A392QUS9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156784">
        <property type="protein sequence ID" value="MCI27005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUS9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7596" checksum="80506E38BFDCA25F" modified="2018-12-05" version="1" fragment="single">MHDYLNRSFSIEEVTMAMKHLKGNAAPGPDGLNAAFYQQYWEIIGHDIATTVLNILNHEGDPSSINHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX33</accession>
    <name>A0A392QX33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166715">
        <property type="protein sequence ID" value="MCI28587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="13937" checksum="7267B6CF65E705C0" modified="2018-12-05" version="1">MLSNFAASINFSLSPSWFEDAESDPVALSLPEIRLIPEAGVIPNFFDLPLSSFLRFPSSTHPTVFWRXXXXXXPPSFKASASLTHFGAPIRLSFEVAFCCLVFKRDFGFLDLCEERTSSGSEIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QXB1</accession>
    <name>A0A392QXB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164299">
        <property type="protein sequence ID" value="MCI28220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9087" checksum="291A75537F42EC48" modified="2018-12-05" version="1" fragment="single">MCISRPEDFFXPEDISAKITALSCSENFPQTMNATLDKTKGGSLPLAFYHDELPGGSANAQIPLLIRAYMANFDVRRVLVDPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R392</accession>
    <name>A0A392R392_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010178567">
        <property type="protein sequence ID" value="MCI30306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R392"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2972" checksum="08279B96B3703761" modified="2018-12-05" version="1" fragment="single">ENTSCVPLQVPRRRLVIANGGGNFVSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R532</accession>
    <name>A0A392R532_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transmembrane protein 214-A</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181217">
        <property type="protein sequence ID" value="MCI30655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R532"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019308">
        <property type="entry name" value="TMEM214"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13448:SF14">
        <property type="entry name" value="F26K24.17 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13448">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11568" checksum="E8FFC41586E207B8" modified="2018-12-05" version="1" fragment="single">VASVAVLKKLSDDWKVQATKLAPYESLREILKHFRQKNEKALATETDAAHHAHFKDADKYCKIISGRVSQGHGCKACLTFTVLAVAVGAVVLYPNLESLDFKNLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAC3</accession>
    <name>A0A392RAC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein phosphatase 4 regulatory subunit</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205613">
        <property type="protein sequence ID" value="MCI33588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11092" checksum="F4713817BF66CEA1" modified="2018-12-05" version="1">MCSTLSQAVLPSKKSAINIHTGAQTVEGRTSSSEDNKEDRQNVTRSSSDNSNIGAEDNLVEKDSSASRSFSDRLHAKSDNIQMGGEERPLVPPKSSPEMAVNGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RBJ4</accession>
    <name>A0A392RBJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D111/G-patch domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204053">
        <property type="protein sequence ID" value="MCI33394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RBJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47423">
        <property type="entry name" value="G-PATCH DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47423:SF2">
        <property type="entry name" value="PROTEIN SQS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15603" checksum="9EF38B59A14FA765" modified="2018-12-05" version="1" fragment="single">DSQKNKIVAHEDQTPPSKQNSVEYTYGYGDFVLGDSSHRGLGFAAEDEHDETPSGIGTSSEQMLQSTPVLDSSSFEKDVGSDKGINCELNNQMDEDLPSNVSSRKNSGFLSIGGLKLYTEDISDIESEENDIEESSDEDGSSEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCE9</accession>
    <name>A0A392RCE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010202885">
        <property type="protein sequence ID" value="MCI33255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCE9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2789" checksum="09260E90EC47E7F7" modified="2018-12-05" version="1" fragment="single">MGENLPATIASMLPLLSMTVAVVVLSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REZ9</accession>
    <name>A0A392REZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mediator of RNA polymerase II transcription subunit 15A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010220679">
        <property type="protein sequence ID" value="MCI35151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37604">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37604:SF1">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4309" checksum="965F11DC7D0CF850" modified="2018-12-05" version="1" fragment="single">MSLLGDDGRGYELARKLESAGIWRTWLGDSNYTNFAPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFZ5</accession>
    <name>A0A392RFZ5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">4-coumarate--CoA ligase</fullName>
            <ecNumber evidence="3">6.2.1.12</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(E)-4-coumarate + ATP + CoA = (E)-4-coumaroyl-CoA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19641"/>
            <dbReference type="ChEBI" id="CHEBI:12876"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:85008"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.12"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:19642"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(E)-4-coumarate + ATP + H(+) = (E)-4-coumaroyl-AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:72419"/>
            <dbReference type="ChEBI" id="CHEBI:12876"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:192348"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:72420"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(E)-4-coumaroyl-AMP + CoA = (E)-4-coumaroyl-CoA + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:72423"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:85008"/>
            <dbReference type="ChEBI" id="CHEBI:192348"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:72424"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.12" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010220597">
        <property type="protein sequence ID" value="MCI35137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016207">
        <property type="term" value="F:4-coumarate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096:SF406">
        <property type="entry name" value="4-COUMARATE--COA LIGASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24096">
        <property type="entry name" value="LONG-CHAIN-FATTY-ACID--COA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding enzyme C-terminal" evidence="10">
        <location>
            <begin position="2"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00034219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00034223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI35137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8405" checksum="B6453457A795575D" modified="2018-12-05" version="1">MKDEAAGEVPVAFVVRSNGHTDLTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAEAVSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRX6</accession>
    <name>A0A392RRX6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase zinc-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010266758">
        <property type="protein sequence ID" value="MCI39373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="5"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9402" checksum="25F698380117B68C" modified="2018-12-05" version="1" fragment="single">WGSGNLWFSYAPSKVIVFSWQLVLGRLPTRANLAVRGVFGGDSDPSCVWCPGVREAEHHLFVTCAFASNIWYNFFNWFGVTSVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTP9</accession>
    <name>A0A392RTP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010261761">
        <property type="protein sequence ID" value="MCI38946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5529" checksum="C7EC12D15983A34D" modified="2018-12-05" version="1" fragment="single">GLTPSSRWEVQVAGKGHSDVPVYRSSEDVFSSDQFALGKHLHEFMPKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUN7</accession>
    <name>A0A392RUN7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide/nitrate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278737">
        <property type="protein sequence ID" value="MCI40348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUN7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI40348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9702" checksum="AF688E73E51F21EF" modified="2018-12-05" version="1" fragment="single">MSQYIPSLKPCNTKTCLQPRKLHEVAFFLALYCISLGTGGFKPCLESFGADQFDEDNIEERKKKLSFFNWWNFALCFALLLGATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S033</accession>
    <name>A0A392S033_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295821">
        <property type="protein sequence ID" value="MCI41752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S033"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="103" mass="11830" checksum="398D0E88FB94BB77" modified="2018-12-05" version="1" fragment="single">MPPKRSPSFSRRGGTPPRTFTQRIMDLQLPVELEKPPTMDIYDGSTDPVDHIENMEVVLEYKNVRGSIKCKLFPTTLRKGAMTWYKSLPPGSIDSWTELCRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6P5</accession>
    <name>A0A392S6P5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010326023">
        <property type="protein sequence ID" value="MCI44092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6P5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8343" checksum="192B7E97E7836F0E" modified="2018-12-05" version="1" fragment="single">MEAQEAEWNHEIETFLQQLGDDLEETPKVVAKLPEVKELPPNWKYEFLGKEFKKPIVISSLLTPFEEEELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9C6</accession>
    <name>A0A392S9C6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332491">
        <property type="protein sequence ID" value="MCI44570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9C6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5009" checksum="0D3649E9F98E6BB1" modified="2018-12-05" version="1" fragment="single">MRISANFLLPGVQGVRYWGARRRPAGQVCCLLSVSCATLEQGCALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9W1</accession>
    <name>A0A392S9W1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340815">
        <property type="protein sequence ID" value="MCI45207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9W1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="98" mass="11226" checksum="8B8BA2C7418655DD" modified="2018-12-05" version="1" fragment="single">MQRCFPTLLVFVAKLLYGLDWLFRIMAARTIAQIAEALATMAEIMARDNQPGREDETRLKRFMKHKPPTFTGGYNPEGAVNWLEEVEIIFEAMGCSEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SD08</accession>
    <name>A0A392SD08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010362920">
        <property type="protein sequence ID" value="MCI46801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SD08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5900" checksum="BE8E990732935251" modified="2018-12-05" version="1" fragment="single">MQRPLARRSSNSAAERERELRLNIGLEFEDNGVGVEARVVFGDDVDLGLERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SF37</accession>
    <name>A0A392SF37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010373323">
        <property type="protein sequence ID" value="MCI47508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SF37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3171" checksum="3B36A1CA45C25226" modified="2018-12-05" version="1" fragment="single">QDLMKSFSFKRIQPMWDGGADINVDRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJ01</accession>
    <name>A0A392SJ01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010392455">
        <property type="protein sequence ID" value="MCI48853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJ01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="40"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="74"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="10722" checksum="DADC7C72B3EB74CC" modified="2018-12-05" version="1" fragment="single">ELEESTILQRAARDSSSLTPVALVANTTAPPSNLPPPSYPTNNQQNNTTAPPIAVEEENPIAEIEVAEMEGVDSSNLGHNGCHGSSGHHGTFHHVLTHPIIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMX5</accession>
    <name>A0A392SMX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cleavage and polyadenylation specificity factor subunit 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010398185">
        <property type="protein sequence ID" value="MCI49236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005849">
        <property type="term" value="C:mRNA cleavage factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031124">
        <property type="term" value="P:mRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016706">
        <property type="entry name" value="Cleav_polyA_spec_factor_su5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13047">
        <property type="entry name" value="PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13869">
        <property type="entry name" value="NUDIX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4399" checksum="F3407FD194D87383" modified="2018-12-05" version="1" fragment="single">IEGLKRKLTSKLGANSAALVPDWQIGECVAIWWRPNFET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNH9</accession>
    <name>A0A392SNH9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Remorin-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010401003">
        <property type="protein sequence ID" value="MCI49426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNH9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6563" checksum="0E47CA36C3309C47" modified="2018-12-05" version="1" fragment="single">MDKILKKLRRAQLKAESMRSITPVQQDHQASKICKVFSFPKYAQIRSLGSCFTSHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSL0</accession>
    <name>A0A392SSL0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010422856">
        <property type="protein sequence ID" value="MCI50836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="23"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI50836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7529" checksum="79EEDA38FE5AFC9E" modified="2018-12-05" version="1" fragment="single">GKPYDNRGRGNTSGGRKQGNGYCYKCGGRGHMSYECSQKMDKPQESGMQEAKEDYGKGVCVKRRGCGSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYH3</accession>
    <name>A0A392SYH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010457930">
        <property type="protein sequence ID" value="MCI53105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5611" checksum="4ED9B36C773081AB" modified="2018-12-05" version="1" fragment="single">RWEVGRLRGSCQFGPVWGVAGSDLVAEGNPHVAGEAKVADGNPDVVVDVVHSDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SYY1</accession>
    <name>A0A392SYY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010473597">
        <property type="protein sequence ID" value="MCI54061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SYY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8484" checksum="55CEB223902E2141" modified="2018-12-05" version="1">MFAAATLTRRISDSPWSCSLQRSLQRLVATHVRCMFAEATGSDWVLLHSDDVRYCSLWLAAAKVPKSKIFNLLQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T172</accession>
    <name>A0A392T172_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010484563">
        <property type="protein sequence ID" value="MCI54749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T172"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="17" mass="1871" checksum="7744C365E36EEB48" modified="2018-12-05" version="1">MHTPVTPEELESSSLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1V2</accession>
    <name>A0A392T1V2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010479740">
        <property type="protein sequence ID" value="MCI54464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1V2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3256" checksum="B992F5C35BC1DF3E" modified="2018-12-05" version="1" fragment="single">MEDERIWNCSRQGMYTVRLAYYQLTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2W0</accession>
    <name>A0A392T2W0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010483983">
        <property type="protein sequence ID" value="MCI54717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2W0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7738" checksum="3243D77D167E07B5" modified="2018-12-05" version="1" fragment="single">TVLRTIEDQIALQIKGLQEAMLKRSDLVSNVVKKDILLMIVGIQGLTASTVRNRVTLPEIAVLQKRNRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T472</accession>
    <name>A0A392T472_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010498261">
        <property type="protein sequence ID" value="MCI55562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T472"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="9678" checksum="F9736F2B8D3E85FD" modified="2018-12-05" version="1" fragment="single">SVQARVRAAKNAKKKTSDTVSAGTPSGQASPSPVVEVAREKNSRVDSVGGSGGLHRVHPGVPAELFVLPPELGHAKLFDGQTQLVVSEPEKEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T516</accession>
    <name>A0A392T516_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010498985">
        <property type="protein sequence ID" value="MCI55604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T516"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6769" checksum="D4B3A48239C389A7" modified="2018-12-05" version="1" fragment="single">ASLARCLCWFRVQIRVFCGGGGDEYAVVFRGGGGWSAAFFCGGGDVSGGGWVVLFWCGGIWSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T719</accession>
    <name>A0A392T719_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010519483">
        <property type="protein sequence ID" value="MCI56858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T719"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2472" checksum="6ED66EA3FDBC7A4F" modified="2018-12-05" version="1" fragment="single">SLKILNYNLRGLGGGSKQPDVGAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI59</accession>
    <name>A0A392TI59_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-glycosyltransferase 73D1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-glycosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010578807">
        <property type="protein sequence ID" value="MCI60284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI59"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035251">
        <property type="term" value="F:UDP-glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48047">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48047:SF182">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI60284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6265" checksum="B26F2E85FB306AC3" modified="2018-12-05" version="1" fragment="single">IEASGKGFLWVAPEDDEEFCNVEKGFKFKRGMLVRGWVPHRLILKHPAIGGFLTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIK1</accession>
    <name>A0A392TIK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010588516">
        <property type="protein sequence ID" value="MCI60818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4195" checksum="8B9A005E88B629E8" modified="2018-12-05" version="1" fragment="single">HYVSPVIVHFNREDSSAWCCCVVLDGLRLVTSMLKCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIX1</accession>
    <name>A0A392TIX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010583255">
        <property type="protein sequence ID" value="MCI60534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="7886" checksum="B5B2E540B69CD039" modified="2018-12-05" version="1" fragment="single">VIHATGSSPSNTGNLTFFPARRDSFRFDASTDPSLRIVVFVLTGIALVVLSGLALDVLTGDPAFAGLRNNSVIAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TLU4</accession>
    <name>A0A392TLU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010593630">
        <property type="protein sequence ID" value="MCI61106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TLU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6200" checksum="3429E50A3C9BD945" modified="2018-12-05" version="1" fragment="single">MPIGFPTLLCDIILGQYPGICTTADVSSKRDSDLTGDYRLFTGSHVADIAIATANQPTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPC6</accession>
    <name>A0A392TPC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010629241">
        <property type="protein sequence ID" value="MCI63003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9552" checksum="37E057255975C430" modified="2018-12-05" version="1" fragment="single">WEDVDALRSKFPSFNLEDKVDFYGDGIVMKPKGSNILETNDSANDERHDALANKAAKCGEVQPIRKSNRMHKEHAMWKDYVKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQM8</accession>
    <name>A0A392TQM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010624251">
        <property type="protein sequence ID" value="MCI62737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI62737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7940" checksum="9EE59F40F6A66BA9" modified="2018-12-05" version="1" fragment="single">MGTRLKMSTSHHPQTDGQSERTIQTLEDMLRACVLEDGGSWGDHLHLIEFAYNNSYHASIRMAPYEALYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSD5</accession>
    <name>A0A392TSD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010643785">
        <property type="protein sequence ID" value="MCI63799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4855" checksum="D01463D0C749531A" modified="2018-12-05" version="1" fragment="single">GKRATKASASARREKEAQNPPKKRSWKAPTQSDAAETAHPEHED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TYW6</accession>
    <name>A0A392TYW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PAN domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010694479">
        <property type="protein sequence ID" value="MCI66383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TYW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8164" checksum="72156B9AB53648BC" modified="2018-12-05" version="1" fragment="single">MLGTRDESKVGYFKVKKGPRKRNKVGVIIGIVVGVLFGGVVLGVGFCVMRWKKKKGNLKEEDGNWASPGPYRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4V1</accession>
    <name>A0A392U4V1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010738204">
        <property type="protein sequence ID" value="MCI68533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4V1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7244" checksum="A60F6478F3B35935" modified="2018-12-05" version="1" fragment="single">GKTVGSPMEINIRRAERVAEEGRGMVDIITSAVKWVTRLLSAHRRRISALGVEDWDIGLTSIGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U719</accession>
    <name>A0A392U719_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010732906">
        <property type="protein sequence ID" value="MCI68230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="14" mass="1287" checksum="8D7EF1FFB3B39CA5" modified="2018-12-05" version="1">MMVATGSSSVGSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U9W4</accession>
    <name>A0A392U9W4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010751580">
        <property type="protein sequence ID" value="MCI69220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U9W4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5954" checksum="6547643864620DDE" modified="2018-12-05" version="1" fragment="single">PLRSSFLNFSTVRRAKPACAKRNFQKNIAVQDFDGAPRQYPLRNAQITEDLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UAR2</accession>
    <name>A0A392UAR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010776937">
        <property type="protein sequence ID" value="MCI70482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UAR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5535" checksum="A229A0D0642CAFEE" modified="2018-12-05" version="1" fragment="single">VWKSLGQLRAAQEGWRVAPASAEELGSFYHLRVAQERTARRASQVDHASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI53</accession>
    <name>A0A392UI53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832337">
        <property type="protein sequence ID" value="MCI73152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6156" checksum="296E0C32823C65B7" modified="2018-12-05" version="1" fragment="single">MEKLVLIRVGKETDFGVDENGVVRYHGRVCILDIPELRKMILEEGHRSGLSIHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI67</accession>
    <name>A0A392UI67_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010796145">
        <property type="protein sequence ID" value="MCI71435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI67"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8188" checksum="0F70F306F701F1E0" modified="2018-12-05" version="1" fragment="single">MRQEDHLLQISVEITPEAKGKEIEVEPHPLVLVLQEKLEAQGAEQQKIKEELKSLSEGQQNIVRTQDDISSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJ50</accession>
    <name>A0A392UJ50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010817308">
        <property type="protein sequence ID" value="MCI72400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJ50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5764" checksum="4338FFD41E52A060" modified="2018-12-05" version="1" fragment="single">MSIKAPYGFRLCTVPVTTDPIPSCAWMPATALRWLRISLDSSSSTSTNFKGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULA6</accession>
    <name>A0A392ULA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative peptide/nitrate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010860345">
        <property type="protein sequence ID" value="MCI74409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3846" checksum="2F779A2DE6E410E8" modified="2018-12-05" version="1" fragment="single">MAAGDSETPLLLETVEGVVDFKGRPVLRSTSGGWKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ69</accession>
    <name>A0A392UQ69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010886412">
        <property type="protein sequence ID" value="MCI75592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5583" checksum="CBA102841C61A6BA" modified="2018-12-05" version="1" fragment="single">MVEEETLKELKFDRGRVKVRLPVASCGVDEVVPISSGGIVFPVRILEEVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UXB5</accession>
    <name>A0A392UXB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010997015">
        <property type="protein sequence ID" value="MCI80497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UXB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5817" checksum="D6DA9EF42BED873F" modified="2018-12-05" version="1" fragment="single">MVAGILSSTGSDDLSSDLVVCSYYDDHVVAGTLSSMESDNLSSYLVICCYYDDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4S4</accession>
    <name>A0A392V4S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011042434">
        <property type="protein sequence ID" value="MCI82403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4S4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6314" checksum="178BD27DA16B5DFF" modified="2018-12-05" version="1">MGSRLLTTGEWYDMTTVLVPDVPPNFLLCWLTCALGPSGLLCWRTPHVRSPADALLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5K5</accession>
    <name>A0A392V5K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011050442">
        <property type="protein sequence ID" value="MCI82732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5K5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="6"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8597" checksum="94F16902E1DFF84E" modified="2018-12-05" version="1" fragment="single">AVDVAIVWETFKREFLRKYFPADVRNRKVIEFMELKQGNLSVAEYSTKFEALCVFSPHYNTVEAEEAKCVKFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V786</accession>
    <name>A0A392V786_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011059668">
        <property type="protein sequence ID" value="MCI83129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V786"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4282" checksum="41CBA8A5E9859E25" modified="2018-12-05" version="1" fragment="single">MSGETKRPSDLKNKDTEAILAAERLAFTTASQRDRNKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VD85</accession>
    <name>A0A392VD85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011114589">
        <property type="protein sequence ID" value="MCI85403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VD85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5506" checksum="11EE36B30E938F60" modified="2018-12-05" version="1" fragment="single">MKNPDRLISATVHCKCCYHRCPRYNAPCRQHILKDRLSHSNISALRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEM0</accession>
    <name>A0A392VEM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011122480">
        <property type="protein sequence ID" value="MCI85729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7847" checksum="575142A67A2557C8" modified="2018-12-05" version="1" fragment="single">ENVFPYASREEGSNGGDPPPMFAPNSCSVEEETAPTQDKQQNQIDLFTQPVEDQQVVEANSDVVEVVEESY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFN3</accession>
    <name>A0A392VFN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011123180">
        <property type="protein sequence ID" value="MCI85761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3052" checksum="F53E0ABF3B1FF3E4" modified="2018-12-05" version="1">MESACQQWGGTHFLLHRLKLAPTAILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJ22</accession>
    <name>A0A392VJ22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011179123">
        <property type="protein sequence ID" value="MCI87917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJ22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3645" checksum="CC9CB0C6132D1736" modified="2018-12-05" version="1" fragment="single">RRANATSRTTTGDRYMVKRKVFGCEGKGWRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJR8</accession>
    <name>A0A392VJR8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011155930">
        <property type="protein sequence ID" value="MCI87035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJR8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3254" checksum="EAE0C01C4310E9F2" modified="2018-12-05" version="1" fragment="single">YRVRCFTLERDMRIDDVDASFFWGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJZ8</accession>
    <name>A0A392VJZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative retrotransposon gag protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011199825">
        <property type="protein sequence ID" value="MCI88686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJZ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF60">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6016" checksum="4610485CCA3744B3" modified="2018-12-05" version="1" fragment="single">MLNLGGAFKTKKLCPRYVGPFQIIERVGEVAYRLALPPTMFGVHDVFHISQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYA5</accession>
    <name>A0A392VYA5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011302006">
        <property type="protein sequence ID" value="MCI92469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYA5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3349" checksum="84AF4EFCACC450D4" modified="2018-12-05" version="1" fragment="single">DTKQCWSFGGRETWGREVDCRNYNRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0A0</accession>
    <name>A0A392W0A0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011319623">
        <property type="protein sequence ID" value="MCI93112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0A0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7007" checksum="2DB98F70CD8EDC3C" modified="2018-12-05" version="1" fragment="single">GNTLKPQNGNNEDHARTDLAGAFGSHGVGPSVKKSGDARNGKKIGSGLNNEDHARPDLAGALEVFLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5Q1</accession>
    <name>A0A392W5Q1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">H/ACA ribonucleoprotein complex non-core subunit NAF1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011373775">
        <property type="protein sequence ID" value="MCI95032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5Q1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7487" checksum="B3E72E26248893CA" modified="2018-12-05" version="1" fragment="single">PENLSNNNGSELDPNHVAAKTPVTEPEKLDTLGDEIPIEKIVEKITLMEDSPSVEVNGNEDKDEKEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8T9</accession>
    <name>A0A392W8T9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011408146">
        <property type="protein sequence ID" value="MCI96199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8T9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI96199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4026" checksum="AB07B0D6C925DEBD" modified="2018-12-05" version="1" fragment="single">SPRRAALSPVRNTDLQVLPETNSREGRTSPGHPRTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W937</accession>
    <name>A0A392W937_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MFS transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011423882">
        <property type="protein sequence ID" value="MCI96786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W937"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4525" checksum="7718E0CDAC8E0BFF" modified="2018-12-05" version="1" fragment="single">MKPETVTLVLVNLAGIMERADESLLPGVYKEIGAALNADPTAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W9E1</accession>
    <name>A0A392W9E1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011396105">
        <property type="protein sequence ID" value="MCI95761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W9E1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6331" checksum="36E0AC5EB84E5E27" modified="2018-12-05" version="1" fragment="single">NEAVFYEQYEAHMKAQEEQRDAAASAAAAGAISPEFTLSELGIDDPGEFHNFMDPPASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZR4</accession>
    <name>A0A392MZR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010022112">
        <property type="protein sequence ID" value="MCH92198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="71"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH92198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="13197" checksum="A4548D4AD3093EB2" modified="2018-12-05" version="1">MIYTPSNQEEVERAEAARKRKEDASRDMVSELLDVASDVMVFQTSEPTSSRGKATLISEPEPVVLKLQEALAQQMSVTDQLKEDVQELKENQKEAKRTQEEMNAKLDSILAFLSKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N050</accession>
    <name>A0A392N050_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucosidase 2 subunit beta-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010024292">
        <property type="protein sequence ID" value="MCH93157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N050"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017177">
        <property type="term" value="C:glucosidase II complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006491">
        <property type="term" value="P:N-glycan processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039794">
        <property type="entry name" value="Gtb1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12630:SF1">
        <property type="entry name" value="GLUCOSIDASE 2 SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12630">
        <property type="entry name" value="N-LINKED OLIGOSACCHARIDE PROCESSING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH93157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="26091" checksum="BCCAFC1D4FE31141" modified="2018-12-05" version="1" fragment="single">GEDVSDNTDGLSKEELGRLVASRWTGEDVGKKSPEADTALDNEDQEDISHGTNIEENEGYASDTDDDNHKYDEDVNDDEFQEDEHDDLSSSYKSDDETETDFSDVSTTDDPSWLEKIQKSVWNMFQAVNIFQTPVNQSDAARIRKEYDESSTKLSKIQSKISSLTQKQKLDFGPAKEFYSFYDRCFESKQNKLHFFSLNSTFTKSAPISRLLRRRAIPPPVWGKVLVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N2Z2</accession>
    <name>A0A392N2Z2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">glutamate decarboxylase</fullName>
            <ecNumber evidence="3">4.1.1.15</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the group II decarboxylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.15" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010026149">
        <property type="protein sequence ID" value="MCH93953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N2Z2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004351">
        <property type="term" value="F:glutamate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006538">
        <property type="term" value="P:L-glutamate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010107">
        <property type="entry name" value="Glutamate_decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002129">
        <property type="entry name" value="PyrdxlP-dep_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43321">
        <property type="entry name" value="GLUTAMATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43321:SF34">
        <property type="entry name" value="GLUTAMATE DECARBOXYLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00282">
        <property type="entry name" value="Pyridoxal_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="6 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR602129-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH93953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="218" mass="24274" checksum="6462A81E0A3E7DA5" modified="2018-12-05" version="1" fragment="single">MIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRKWQNRMKNAGKSCDNPNIVTGANVQVCWEKFARYFEVELKEVKLSDGYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIAKNAETGWETPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKDDLPDELIFHINYLGADQPTFTLNFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6Q6</accession>
    <name>A0A392N6Q6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Box C/D snoRNA protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026689">
        <property type="protein sequence ID" value="MCH94174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6Q6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20146" checksum="4A060B589534618B" modified="2018-12-05" version="1">MKAPIKQQLENVVILEYPVIFVFLPSHSINFEVIKAVNPSVPKSPPKDSEVNLIPEGVSFREEVIEDDNNSDNPKVFDLMKHEASSSSHQVFEGDIEGNLSQSSLIDKELELPEDVTFDFDQDFMDDAYADLMCHLNPEEFLDFDSVFAKKDGNEIDLLPTIEEFPVAEELEEGEIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7P4</accession>
    <name>A0A392N7P4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein NLP8-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030725">
        <property type="protein sequence ID" value="MCH95806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7P4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045012">
        <property type="entry name" value="NLP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002">
        <property type="entry name" value="PROTEIN NLP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32002:SF41">
        <property type="entry name" value="PROTEIN NLP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="12846" checksum="DDDDEDBC2B22F21B" modified="2018-12-05" version="1">MQKICKSLRTVSGAELSEIESSQAGFEKNSVPSFPPSSKRKSRMTPFINENHGSVQKLSSKASNLRNNGNEPSSDQERNGPKRRGEKNRSSSEKNVSLSVLQQYFSGSLKDAAKSIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NKP7</accession>
    <name>A0A392NKP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043130">
        <property type="protein sequence ID" value="MCI00411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF263">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="7"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="4">
        <location>
            <begin position="161"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI00411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="258" mass="29932" checksum="B1135FE95DBFE03F" modified="2018-12-05" version="1" fragment="single">MDTPNRLSSDIERRIGRMKVLIVLDDVKDTDQLEMLFGTLDWFRSDSRIIVTTRDKQVLIANEVDDIYEVGILSSNKALELFNLNAFERNNQLEMEEYCELSKRFVNYARGIPLVLKILGHLLRGKDKQVWESMLDKLKREPIKKVYHVMRLSYDDLDRLEQKIFLDIACFFNGLNLKVDYMKLLLKXCESDNSVAVGLERLTDRALVTISKDNVVSMHEIIQEIGREIVRQESSKDPGSCSRLCDPDDICDVLQNDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NR53</accession>
    <name>A0A392NR53_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">chalcone synthase</fullName>
            <ecNumber evidence="4">2.3.1.74</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The primary product of this enzyme is 4,2',4',6'-tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Secondary metabolite biosynthesis; flavonoid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.74" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010047410">
        <property type="protein sequence ID" value="MCI01874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00154"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016210">
        <property type="term" value="F:naringenin-chalcone synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009813">
        <property type="term" value="P:flavonoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030639">
        <property type="term" value="P:polyketide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00831">
        <property type="entry name" value="CHS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000014">
        <property type="entry name" value="Chalcone synthase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000025">
        <property type="entry name" value="Chalcone synthase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012328">
        <property type="entry name" value="Chalcone/stilbene_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001099">
        <property type="entry name" value="Chalcone/stilbene_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018088">
        <property type="entry name" value="Chalcone/stilbene_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011141">
        <property type="entry name" value="Polyketide_synthase_type-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877:SF80">
        <property type="entry name" value="CHALCONE SYNTHASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11877">
        <property type="entry name" value="HYDROXYMETHYLGLUTARYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02797">
        <property type="entry name" value="Chal_sti_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00195">
        <property type="entry name" value="Chal_sti_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00441">
        <property type="entry name" value="CHALCONE_SYNTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0284">Flavonoid biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Chalcone/stilbene synthase N-terminal" evidence="9">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Chalcone/stilbene synthase C-terminal" evidence="10">
        <location>
            <begin position="156"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI01874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="302" mass="33089" checksum="F689CC0EA6A325F5" modified="2018-12-05" version="1" fragment="single">MCEYMAPSLDVRQDIVVVEVPKLGKEAAKKAISEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPXXXXXXXXXXXXXXXXXXXXXXXXXDPDLTVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGINDWNSIFWVAHPGGPAILDQVEEKLGLKQEKLRSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKITTGEGLEWGVLFGFGPGLTVETVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NT10</accession>
    <name>A0A392NT10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase 11 plasma membrane-type-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010048878">
        <property type="protein sequence ID" value="MCI02360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NT10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI02360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="19207" checksum="E802928D8E7610C8" modified="2018-12-05" version="1" fragment="single">VKPSPLPDSWKLSEIFTTGVVLGSYLAMMTVIFFWVAYKTDFFPKVFGVETLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIIAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNLIFYIPLDFIKFFIRYALSGRAWDLVIEQRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0K5</accession>
    <name>A0A392P0K5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">CBL-interacting serine/threonine-protein kinase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010059070">
        <property type="protein sequence ID" value="MCI05571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895">
        <property type="entry name" value="CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43895:SF65">
        <property type="entry name" value="CBL-INTERACTING PROTEIN KINASE 21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI05571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="18237" checksum="6C023461F296F5DB" modified="2018-12-05" version="1" fragment="single">MQLENVLLDAKGNIKITDFNLSALPQHCRADGLLHTTXXXXNYVAPEILANRGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGEVQIPRWLSPGAQNIIKRILDPNPKTRITMSMIKEDEWFKQGYNPANLDDEEEDVYIDDEAFSIQEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3P2</accession>
    <name>A0A392P3P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trans-12-dihydrobenzene-12-diol dehydrogenase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062487">
        <property type="protein sequence ID" value="MCI06628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3P2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050424">
        <property type="entry name" value="Gfo-Idh-MocA_inositol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43593">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43593:SF1">
        <property type="entry name" value="INOSITOL 2-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gfo/Idh/MocA-like oxidoreductase C-terminal" evidence="1">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="107" mass="11632" checksum="757D930AA37CA0D3" modified="2018-12-05" version="1" fragment="single">MRLFVGANPVRVMASGAIDVNHKDEIYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSKNEQEISVVGDIGKGEAFVPESVVRFGTREAGRDGVESLKAEDPRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4G2</accession>
    <name>A0A392P4G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Eukaryotic initiation factor iso-4F subunit p82-34</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061502">
        <property type="protein sequence ID" value="MCI06329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7387" checksum="AD70551576BF0CB9" modified="2018-12-05" version="1" fragment="single">VGDLQFEGRERVRYTKEELLKIRETVEETPGDILKLRHDIDAELFGEDQSWGRVENNLTVEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9G1</accession>
    <name>A0A392P9G1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067073">
        <property type="protein sequence ID" value="MCI07896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9G1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009706">
        <property type="term" value="C:chloroplast inner membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0099402">
        <property type="term" value="P:plant organ development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31038">
        <property type="entry name" value="EXPRESSED PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31038:SF18">
        <property type="entry name" value="PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="9843" checksum="06386A07EDBA6D2F" modified="2018-12-05" version="1" fragment="single">PLKSDQNPPFGNDGGNNFGEGGGGNNGEGGGGGEGDEEFGTLLNFEVEARGVKLPSDMEEAARITGIREMFLLRYLELQVGFVQKELTKHED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9Q2</accession>
    <name>A0A392P9Q2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein FAM210B-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067361">
        <property type="protein sequence ID" value="MCI07986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9Q2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045866">
        <property type="entry name" value="FAM210A/B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009688">
        <property type="entry name" value="FAM210A/B-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21377:SF20">
        <property type="entry name" value="OS04G0416000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21377">
        <property type="entry name" value="PROTEIN FAM210B, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06916">
        <property type="entry name" value="FAM210A-B_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1279" evidence="2">
        <location>
            <begin position="33"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8329" checksum="3223688901D7BE05" modified="2018-12-05" version="1" fragment="single">MNNITSSYLRECHRVIIFSSKEEGEGQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL20</accession>
    <name>A0A392PL20_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">1-aminocyclopropane-1-carboxylate oxidase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083138">
        <property type="protein sequence ID" value="MCI12199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL20"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050295">
        <property type="entry name" value="Plant_2OG-oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47991">
        <property type="entry name" value="OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0847">Vitamin C</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI12199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15894" checksum="A5DE8C954E5BE713" modified="2018-12-05" version="1" fragment="single">MKLVNHGISIELMDTVEKLTKENYKKRMEQRFKEMVASKGLEFAQSEINDLDWESTFFLRHLPNSNISEIPDLDDDYRKTMKEFAVELEKLAELLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL80</accession>
    <name>A0A392PL80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIR-NBS-LRR type disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010085858">
        <property type="protein sequence ID" value="MCI12853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058192">
        <property type="entry name" value="WHD_ROQ1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017:SF290">
        <property type="entry name" value="ADP-RIBOSYL CYCLASE_CYCLIC ADP-RIBOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11017">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23282">
        <property type="entry name" value="WHD_ROQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance protein Roq1-like winged-helix" evidence="2">
        <location>
            <begin position="99"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI12853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22838" checksum="11AA01BCB3B408C5" modified="2018-12-05" version="1" fragment="single">EYGADVVYEAQLMSDSEALDLLHRKAFKSDNSSSTFSELIPQILKYAQCLPLAIRVMGSFLCTRNATQWRATLDGXXXXXXXXXXXXVLHLSFEGLGPREREIFLHIACFFIGEKEDYVRRILDACGLHPDIGIPLIAEKSLITIRNKEIHMHGMLQELGKQIVRGQHSNEPEFWSRLWLYRDFHRVMMTEMVTYLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMR9</accession>
    <name>A0A392PMR9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010086955">
        <property type="protein sequence ID" value="MCI13114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMR9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9208" checksum="59BA606662D3BBFF" modified="2018-12-05" version="1">MVMRSSTTENNHNQQFCPEPLARRGCILAGRARTGRTMGFHGLVMLACCIGMKRYGWVAWHGGGEEERKVCCCSASEREKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRS4</accession>
    <name>A0A392PRS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091396">
        <property type="protein sequence ID" value="MCI14199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47938:SF35">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47938">
        <property type="entry name" value="RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81901">
        <property type="entry name" value="HCP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="29"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="63"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="98"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="133"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="168"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI14199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="24965" checksum="23633D6138C95982" modified="2018-12-05" version="1" fragment="single">MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKIDEALKILEEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCTPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIKNFFKCGRKDDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PSR2</accession>
    <name>A0A392PSR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091977">
        <property type="protein sequence ID" value="MCI14336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PSR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7664" checksum="BEC859C33F7AF03A" modified="2018-12-05" version="1">MEDLKTSQKDELAKLKKGCDDQLAKMKEDHAAEVKIIFPDLDEQRLGEADAKKRIENGKLIDDVPPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW30</accession>
    <name>A0A392PW30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097619">
        <property type="protein sequence ID" value="MCI15709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="11037" checksum="16267EC146449779" modified="2018-12-05" version="1" fragment="single">MSRPXPLTRSRXIAVIQQNEPPNLHDVEIIPKPLNTRHNRQAPQYATQASIPANNIFSSVHASLSPNRNHQTPPLHNAQPQIATENHILNQPRRASQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWI5</accession>
    <name>A0A392PWI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099050">
        <property type="protein sequence ID" value="MCI16022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052343">
        <property type="entry name" value="Retrotransposon-Effector_Assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890">
        <property type="entry name" value="NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46890:SF50">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE, EUKARYOTA, REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="14697" checksum="C339D278D77D0F15" modified="2018-12-05" version="1" fragment="single">MRACVFGGSLPVIVNGSPTGEINIQRGLKQGDPLAPFLFLLVAEGFGGVMRKTDDMHLFHGFKICRGGPTISHLQYADDTLCIGEASVENLWTLKAVLRGFELASGLRVNFWKSCLIGINVSDNFMDLACTFLNC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PYI5</accession>
    <name>A0A392PYI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102062">
        <property type="protein sequence ID" value="MCI16702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PYI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35497">
        <property type="entry name" value="ACYL-UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35497:SF1">
        <property type="entry name" value="ACYL-UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8259" checksum="99A0128C66499B5C" modified="2018-12-05" version="1">MDSVKSMIRQAKNEWTKNPEHLQNSSIGLHFPLQSEDTKKEEVKFLKLVQFYRAEYQIPDYPTQVKASMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZY1</accession>
    <name>A0A392PZY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative methyltransferase PMT11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106404">
        <property type="protein sequence ID" value="MCI17651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004159">
        <property type="entry name" value="Put_SAM_MeTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03141">
        <property type="entry name" value="Methyltransf_29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI17651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6756" checksum="7F3AD0DD2F5DC579" modified="2018-12-05" version="1">MDRILRPGGRVYIRDSLAIMDELQEIAKAIGWHTLLRDTAEGPHASYRILVCDKHLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q002</accession>
    <name>A0A392Q002_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102901">
        <property type="protein sequence ID" value="MCI16896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q002"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9395" checksum="3F01EA26420167DA" modified="2018-12-05" version="1">MQSITVENRSGPRGSSSKNEVEAQTQMENLELVRDLVLVGRGKSGDARTGHAQLELTSVRLGEFREKGKPQYQRKILPEWNRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q260</accession>
    <name>A0A392Q260_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110370">
        <property type="protein sequence ID" value="MCI18493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q260"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11450" checksum="53F3C0B62A99BCB2" modified="2018-12-05" version="1">MKFTGVIDGSFPGGYLITVVVGNCPTLSGVAMFTSDQPAQIERNVNENVPLIPTKMGLSQENQNEKKNYLRNTGNPDPNIDINMDKILPGYLKNIILLQQVAESG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4Q6</accession>
    <name>A0A392Q4Q6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114218">
        <property type="protein sequence ID" value="MCI19311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4Q6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2333" checksum="9B3118C6C53A712B" modified="2018-12-05" version="1" fragment="single">MATAAERGRLCGGCPAGSRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8L5</accession>
    <name>A0A392Q8L5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HD domain-containing protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117982">
        <property type="protein sequence ID" value="MCI20070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8L5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.10">
        <property type="entry name" value="Hypothetical protein af1432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5804" checksum="FB8353801BA97AA9" modified="2018-12-05" version="1" fragment="single">SAVTGDTNTTPPPSSPDVPNASPSPYSAIDFLTVCHHLKTTKRSGWVRRDVKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QDG1</accession>
    <name>A0A392QDG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010127391">
        <property type="protein sequence ID" value="MCI21902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QDG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd12087">
        <property type="entry name" value="TM_EGFR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47974">
        <property type="entry name" value="OS07G0415500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47974:SF9">
        <property type="entry name" value="RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="85"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI21902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="14659" checksum="9E2D9885C7F54F94" modified="2018-12-05" version="1" fragment="single">GQCRLDNTGNFYCHQGKSKKTHLTVAAATSSAGVLGVLVILAWFLRRRFINNKNPPYQIIELFLKNHGHLAAKRFTYAEIKKATNSFKNKLGQGGYGSVYKGTLQDGSLVAVKVLSESNGNGEEFINEVLKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHU9</accession>
    <name>A0A392QHU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135317">
        <property type="protein sequence ID" value="MCI23310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4762" checksum="5D4AB62E92576AE3" modified="2018-12-05" version="1">MSRTGGHFRRSRAIALANQTEPLNIQDVEASQEPINTQGEQLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJA0</accession>
    <name>A0A392QJA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135674">
        <property type="protein sequence ID" value="MCI23365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9495" checksum="962BEE4A7F006659" modified="2018-12-05" version="1" fragment="single">VIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQVMILLKVASLLYLRSTEENHMSKFSLYWYNLSWSIKMRRNATHTEFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJQ8</accession>
    <name>A0A392QJQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">U3 small nucleolar RNA-associated-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
            <location evidence="1">Nucleolus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010140065">
        <property type="protein sequence ID" value="MCI24189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006709">
        <property type="entry name" value="SSU_processome_Utp14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14150">
        <property type="entry name" value="U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14150:SF12">
        <property type="entry name" value="U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04615">
        <property type="entry name" value="Utp14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0539">Nucleus</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI24189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="15605" checksum="0787077D691DBDE5" modified="2018-12-05" version="1" fragment="single">LLNPLSEEPEFAKLRKRNQLIEKHARTVHAPLPTAEQAKVDRKVAYEITKKQVTKWQPIIQRNREAPTIFFDENTDLGFSTIGAIASEFEPRTEFERKMAALVHNDKVIEAHNKDGSRLLELNKLNCFGCIIYGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLF5</accession>
    <name>A0A392QLF5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Telomere-associated protein RIF1</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Chromosome</location>
            <location evidence="2">Telomere</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010141824">
        <property type="protein sequence ID" value="MCI24500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QLF5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000781">
        <property type="term" value="C:chromosome, telomeric region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000723">
        <property type="term" value="P:telomere maintenance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022031">
        <property type="entry name" value="Rif1_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22928">
        <property type="entry name" value="TELOMERE-ASSOCIATED PROTEIN RIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22928:SF3">
        <property type="entry name" value="TELOMERE-ASSOCIATED PROTEIN RIF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12231">
        <property type="entry name" value="Rif1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0158">Chromosome</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0779">Telomere</keyword>
    <feature type="domain" description="Telomere-associated protein Rif1 N-terminal" evidence="7">
        <location>
            <begin position="9"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI24500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7617" checksum="5479E55DF1A29ADF" modified="2018-12-05" version="1" fragment="single">MKIKLLNGMKDLLDNGMKIQAIQAWGWFIRMLGSHALKNKHLVNDMLKIPERTFTDPDPQIQIATQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQC0</accession>
    <name>A0A392QQC0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151630">
        <property type="protein sequence ID" value="MCI26159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQC0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="111" mass="12609" checksum="3A64E376C176527C" modified="2018-12-05" version="1">MVVPRPTKPMEPPFPRWYNSNAKCEFHNGAEGHSLEECMAFKVKVQELIDAKWLPFKEDGPNVKSNPLPGYGEAPVNAIEESTNFNKIESVEENVSEAREAANWLRSKYKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QS94</accession>
    <name>A0A392QS94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158263">
        <property type="protein sequence ID" value="MCI27253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QS94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4101" checksum="A93C3E2F0E69F88C" modified="2018-12-05" version="1" fragment="single">NFYLDLWEGFAARPGVSLNGMRQVEWPKFSPIVTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QT36</accession>
    <name>A0A392QT36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010157600">
        <property type="protein sequence ID" value="MCI27149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QT36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5855" checksum="685CB00BB6E89F7C" modified="2018-12-05" version="1" fragment="single">MPEDQTQQHPQELEQKVPKANNFGVHMITVNAAEDVTMKILSFFEQQPEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVY2</accession>
    <name>A0A392QVY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166356">
        <property type="protein sequence ID" value="MCI28523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9398" checksum="EDD4D78DF5B4716A" modified="2018-12-05" version="1" fragment="single">MFKSEGSLDSQNITQVVRNRVSEDMRRQMGESFTVEEVQQAIHQMKSTAAPGPDGLPALFYQKYWDTIGEEVTSFVLSVLNNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWN3</accession>
    <name>A0A392QWN3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167504">
        <property type="protein sequence ID" value="MCI28708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11517" checksum="26A50B0E0E2E50CA" modified="2018-12-05" version="1" fragment="single">VQHHETDPRDGAHVSVTSEDDPSYNPDHEEYVPPVVGDLQAAWPEAIANPTNANLMAALVAAINQNGQLMREHHQRLTAVEESRTSRGVTSSYRRRGSPLSPPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX69</accession>
    <name>A0A392QX69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166944">
        <property type="protein sequence ID" value="MCI28627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6904" checksum="1438CDF083BBDC8F" modified="2018-12-05" version="1" fragment="single">KSDRVRRCSVPTPVKRRGLCTCKCSDAQVSESEANVFRVLGYVPDSTARVEYIYTPRLGQGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZY7</accession>
    <name>A0A392QZY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">F-box-like/WD repeat-containing protein TBL1XR1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173455">
        <property type="protein sequence ID" value="MCI29559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000118">
        <property type="term" value="C:histone deacetylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045183">
        <property type="entry name" value="Ebi-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22846:SF2">
        <property type="entry name" value="F-BOX-LIKE_WD REPEAT-CONTAINING PROTEIN EBI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22846">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="5">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI29559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5366" checksum="D7FBEE9E8A84C1E6" modified="2018-12-05" version="1" fragment="single">DAGYSVAFSPNGEYLASASLDKSIHIWSLNDGKIIKTYNGNGSAFENVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R086</accession>
    <name>A0A392R086_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P-type Cu(+) transporter</fullName>
            <ecNumber evidence="2">7.2.2.8</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.8" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010173098">
        <property type="protein sequence ID" value="MCI29514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R086"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140581">
        <property type="term" value="F:P-type monovalent copper transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000144">
        <property type="entry name" value="copper-transporting ATPase 1 isoform X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46594">
        <property type="entry name" value="P-TYPE CATION-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46594:SF4">
        <property type="entry name" value="P-TYPE CATION-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0186">Copper</keyword>
    <keyword evidence="7" id="KW-0187">Copper transport</keyword>
    <keyword evidence="12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="13" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI29514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7376" checksum="44CD2DDE01A1F8C9" modified="2018-12-05" version="1" fragment="single">MAQTGILVSINGEVAGVLAISDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIEDVIAEAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R383</accession>
    <name>A0A392R383_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein IQ-domain 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the IQD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181474">
        <property type="protein sequence ID" value="MCI30689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005516">
        <property type="term" value="F:calmodulin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd23767">
        <property type="entry name" value="IQCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000048">
        <property type="entry name" value="IQ_motif_EF-hand-BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295:SF233">
        <property type="entry name" value="IQ CALMODULIN-BINDING MOTIF PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32295">
        <property type="entry name" value="IQ-DOMAIN 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00612">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50096">
        <property type="entry name" value="IQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0112">Calmodulin-binding</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="46"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="92"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="26"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI30689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="12836" checksum="4B8A15AD7718A24F" modified="2018-12-05" version="1" fragment="single">KEKEENWQHEAAEEVSLEHFPAYSSPDITNEGSTTSTPMTEERNHAIAYAVATAAAAEAAVTAAQAAARVVRLAGYGRNYKEEXAAILIQSYYRGYLVSLLLSILVKVVDNYLIFTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RBI3</accession>
    <name>A0A392RBI3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="20 21">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">cv. 10/8</strain>
            <tissue evidence="20">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="17 22">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16 22">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="20">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010204728">
        <property type="protein sequence ID" value="MCI33482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RBI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000059">
        <property type="entry name" value="S-receptor-like serine/threonine-protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051343">
        <property type="entry name" value="G-type_lectin_kinases/EP1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47976:SF15">
        <property type="entry name" value="G-TYPE LECTIN S-RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE RLK1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0245">EGF-like domain</keyword>
    <keyword evidence="15" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="9 20" id="KW-0418">Kinase</keyword>
    <keyword evidence="20" id="KW-0430">Lectin</keyword>
    <keyword evidence="12" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 20" id="KW-0675">Receptor</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 20" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="19">
        <location>
            <begin position="16"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="20">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="MCI33482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13743" checksum="7B3B6DF101FD44A3" modified="2018-12-05" version="1" fragment="single">SNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVIKNNNRCSETRVAVKKLNSFLLDQAHREFRNELNAIGLTHHKNLVRLLGFCEGGRERLLVYEYMSNGTLASVLFNADEKQKPSWKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RM25</accession>
    <name>A0A392RM25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010247103">
        <property type="protein sequence ID" value="MCI37673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RM25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="65"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="117" mass="14000" checksum="576BD23DCEA75F53" modified="2018-12-05" version="1" fragment="single">MFVAAFHNGLRAGHFNESLAHKLASSMQEINKRAECYIKGEESNTKKRERDAREKEYVSRRSKGQDNQQQRHWSQPEPQWQGHHRKPYHQQHGHKDRTYPHVRRYTPLNNAKVHVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXV4</accession>
    <name>A0A392RXV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010281784">
        <property type="protein sequence ID" value="MCI40610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6567" checksum="E19B7F5D8BD3B280" modified="2018-12-05" version="1" fragment="single">YGLEANENYKNFSEVIPWKRTMLDVVVQISGEGTSRRQFDKGLKVKFLFGEHFGGSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4G3</accession>
    <name>A0A392S4G3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein TRANSPARENT TESTA 12-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010319055">
        <property type="protein sequence ID" value="MCI43559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4G3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11206">
        <property type="entry name" value="MULTIDRUG RESISTANCE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6101" checksum="4182A7FA5C8A0ED6" modified="2018-12-05" version="1" fragment="single">LVVLALRDVISYIFTEGEEVAAAVSDLCPLLALAIVLNGIQPVLSGNYIFHHIFDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5D8</accession>
    <name>A0A392S5D8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010317020">
        <property type="protein sequence ID" value="MCI43414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5D8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF463">
        <property type="entry name" value="REVERSE TRANSCRIPTASE TY1_COPIA-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10863" checksum="D6D7A5CB789D8D78" modified="2018-12-05" version="1" fragment="single">MEDTIFISHRKYAKNIVKKFGMENAGHKRTHDATHLKLTKDERGIDVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6M3</accession>
    <name>A0A392S6M3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DnaJ heat shock N-terminal domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010325803">
        <property type="protein sequence ID" value="MCI44072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6M3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="10725" checksum="FF178B0D856C4519" modified="2018-12-05" version="1" fragment="single">MYINLKLACPSCGEVFLALETNAPPASGIRPGATLNFKPKPDHQGPQKSKSNAGKNNMAGPNVGAGSSKNSFQWAPFSNSGISNVAQAANVVQQAYHKVKRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SB08</accession>
    <name>A0A392SB08_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Large ribosomal subunit protein bL21m</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340170">
        <property type="protein sequence ID" value="MCI45150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SB08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="bL21-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="bL21-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="50S RIBOSOMAL PROTEIN L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349:SF0">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN BL21M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="L21p-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00044129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI45150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6847" checksum="AAEEFF8E1533E653" modified="2018-12-05" version="1">MILNKVLLLGSASQTIIGRPIVPDAAVHAVVEEHVSAELPISNKFDKQNQLSHFESRNGIALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH54</accession>
    <name>A0A392SH54_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication factor A protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010377099">
        <property type="protein sequence ID" value="MCI47792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH54"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003871">
        <property type="entry name" value="RFA1B/D_OB_1st"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02721">
        <property type="entry name" value="DUF223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Replication protein A 70 kDa DNA-binding subunit B/D first OB fold" evidence="1">
        <location>
            <begin position="27"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8530" checksum="99A0F5D7D525B125" modified="2018-12-05" version="1">MEKGSSSKKLHCLPDKMEKGGYGKKIDWLADISPGKESWRIIVRVIRLWKVAAFQNPCEPYTLEMVLLDFNVSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SH72</accession>
    <name>A0A392SH72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010379951">
        <property type="protein sequence ID" value="MCI47989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SH72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4512" checksum="6C5A94AA76EA0442" modified="2018-12-05" version="1" fragment="single">MPFLFSRMIPTPAPVGPEAPSTEIVHLSAPSFDEAGDVISATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJJ1</accession>
    <name>A0A392SJJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010381491">
        <property type="protein sequence ID" value="MCI48090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2434" checksum="A32321E85E883700" modified="2018-12-05" version="1" fragment="single">LFRFTVIGGGAAVGNAAAAVEDTEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SK71</accession>
    <name>A0A392SK71_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010399023">
        <property type="protein sequence ID" value="MCI49288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SK71"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8561" checksum="186CF1A5538D5057" modified="2018-12-05" version="1" fragment="single">VVESESESSDSDFGLSSLFEEEALPVQPQTPDEFFDRESHSPVSDYGLLTLFQEAPQQAPPQALPVQPQTPDEFFDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKL2</accession>
    <name>A0A392SKL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010400614">
        <property type="protein sequence ID" value="MCI49403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4387" checksum="2E54DC1394DAEFBB" modified="2018-12-05" version="1" fragment="single">MVLTATRLFSLWLAPPPSFLGGVFPVSGGQCVPLLRLQGIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMI2</accession>
    <name>A0A392SMI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010408245">
        <property type="protein sequence ID" value="MCI49889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11163" checksum="4D7FC0F5245F490B" modified="2018-12-05" version="1" fragment="single">LAASNLFFKPCKITLLADSAWSFACGCSTDVKLSFIPPFLAEISYARAGKLCSIVSYQHCRETKPAYNLLPVELSDPFRRDGGHWFHFYPLSEVVHSNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNC3</accession>
    <name>A0A392SNC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010404904">
        <property type="protein sequence ID" value="MCI49684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10798" checksum="EA4628DA92924514" modified="2018-12-05" version="1" fragment="single">GRAKWLVRKFECCSNETGIIMSRCHAVDVILRGRPIRVGEMIARSIKRMVTGPDSYIGHPFVITTLCSRLQVPVDDNDTVVRPPEPLGRRFFRMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPE7</accession>
    <name>A0A392SPE7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010410845">
        <property type="protein sequence ID" value="MCI50064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPE7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4660" checksum="A735A4725A5600DA" modified="2018-12-05" version="1" fragment="single">MLENRTGLVAERPVARSGEPSQRLTSDFQGMLAKRRIARCAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUC3</accession>
    <name>A0A392SUC3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010447083">
        <property type="protein sequence ID" value="MCI52433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="13"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9330" checksum="CD24C826919C5B17" modified="2018-12-05" version="1" fragment="single">MRCTEEDKTTLGSYMLREEANHWWKNAMQRLGAGGVVVTWEMFKREFGVKYFPADVQNTKVVEFLEFKQGNMTVAEYAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUF4</accession>
    <name>A0A392SUF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hsp70-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010435537">
        <property type="protein sequence ID" value="MCI51675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.40:FF:000545">
        <property type="entry name" value="Endoplasmic reticulum chaperone BiP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.640.10">
        <property type="entry name" value="Actin, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="HEAT SHOCK PROTEIN 70KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00301">
        <property type="entry name" value="HEATSHOCK70"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI51675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10264" checksum="B1A9206D5AB31834" modified="2018-12-05" version="1" fragment="single">VVVTVPAYFNNSQRQATKDAGLIAGLNVVRIINEPTAAALAYGLDKKATDDCKVLIFDLGGGTFDVSLLTIDGGFFDVMATAGDTHLGGEDFDNIVVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0H4</accession>
    <name>A0A392T0H4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010472365">
        <property type="protein sequence ID" value="MCI53984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0H4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="10"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI53984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="11146" checksum="FC6D316314BD94ED" modified="2018-12-05" version="1" fragment="single">RQRLGAGGVVITWEMFKREFWVKYFPADVRNWKVVEFLELKQGNMSVAEYATKFEALGAFSPYYNTPEAEYDKCIKFESGLRPEVKHLIGFSEIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7W9</accession>
    <name>A0A392T7W9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010524927">
        <property type="protein sequence ID" value="MCI57191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7W9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7380" checksum="57CAFF253E98B105" modified="2018-12-05" version="1" fragment="single">AHPEHEDTEMEIQGDDVVCEMENEEIVREGDEGSSKVRRPAWVNPYDGHPVPKEFSGGAVRYVGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TC24</accession>
    <name>A0A392TC24_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mediator of RNA polymerase II transcription subunit 34-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010540830">
        <property type="protein sequence ID" value="MCI58124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TC24"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4460" checksum="45E94EC7F2D9258E" modified="2018-12-05" version="1" fragment="single">EGKNTVKLEIFTEGKTKASVRLKRGLSSSGLELKLDELRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFV1</accession>
    <name>A0A392TFV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010555462">
        <property type="protein sequence ID" value="MCI59006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8388" checksum="12F0E884F5E5E3F2" modified="2018-12-05" version="1" fragment="single">MEPFCIPWSCVDLSPKHPDSNKNQPKTQKSFAQAVNNVCEIPLSQLPQPCVKGDRIAIPIPEAEYTVGVDACKHNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG14</accession>
    <name>A0A392TG14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010552876">
        <property type="protein sequence ID" value="MCI58855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5601" checksum="5F3E4A7C89483B85" modified="2018-12-05" version="1" fragment="single">MLAQRAYQRAMSLSFAGAMNFQVPARFLSLKPGTFKFLLASCRFLSPSEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THT2</accession>
    <name>A0A392THT2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010582898">
        <property type="protein sequence ID" value="MCI60512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THT2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6793" checksum="D97A168D5F63CB47" modified="2018-12-05" version="1" fragment="single">MVVHQYDMAWRMDVELPEFPPPLMAAVQAYRAQVPLPSYYQLYPQPADIEGHFQRQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL17</accession>
    <name>A0A392TL17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010597198">
        <property type="protein sequence ID" value="MCI61304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7816" checksum="3C6B39E3DA4196C5" modified="2018-12-05" version="1" fragment="single">MAAKEVVAPETFEIEIDFSDWDYLVEHEDVDVDEDEQLCSEWKRPIVVADTNLDPPSLTPPSPPKKSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TP64</accession>
    <name>A0A392TP64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010615110">
        <property type="protein sequence ID" value="MCI62217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TP64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="40"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="17"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI62217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9836" checksum="86A2486173A73EDF" modified="2018-12-05" version="1" fragment="single">KNKYKGKNEGSQFQGSKNEHGESSKNDNGKTKKSKKHIQCYNCQKYGHYASECKGAKVPRKKNNEDTIANMADQDNEPEIDPLLMMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TQ64</accession>
    <name>A0A392TQ64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010634764">
        <property type="protein sequence ID" value="MCI63311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TQ64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2028" checksum="62403257CA17B148" modified="2018-12-05" version="1" fragment="single">TVAVVANAVIAIAATFNAAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTE0</accession>
    <name>A0A392TTE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010650555">
        <property type="protein sequence ID" value="MCI64169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3144" checksum="D90C81D4E75ED3EF" modified="2018-12-05" version="1" fragment="single">MAENSSSADSYGEIWRDFRKNIARRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZ74</accession>
    <name>A0A392TZ74_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010683859">
        <property type="protein sequence ID" value="MCI65847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZ74"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="10"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6455" checksum="BCCEBB75FFB901CC" modified="2018-12-05" version="1" fragment="single">HPGFSISKEAASSTTPTKPTAGAKEHLDTNQIRRKTKVMSPENWKEGGVEGQRRSSFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZP8</accession>
    <name>A0A392TZP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nucleolin-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010685108">
        <property type="protein sequence ID" value="MCI65914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21245">
        <property type="entry name" value="HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="4">
        <location>
            <begin position="33"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI65914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9902" checksum="000C63716A26FC81" modified="2018-12-05" version="1" fragment="single">EHADEEHEHAEMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5C5</accession>
    <name>A0A392U5C5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010728127">
        <property type="protein sequence ID" value="MCI67987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5C5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4621" checksum="DBB10CFE88B809B7" modified="2018-12-05" version="1" fragment="single">MLSGRESPVLFSAEVCSTGFPPVAPDRGVSDSGTVEGVAFSSLYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UE52</accession>
    <name>A0A392UE52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010789881">
        <property type="protein sequence ID" value="MCI71117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UE52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="25"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="6758" checksum="4C0616A5C4C389AA" modified="2018-12-05" version="1" fragment="single">AAEEKTSGNTSASGAGVPEAKSTEDNTTTETVATGTTGASEANTIDKGKKPAASAFVDNPVFEKPEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UF90</accession>
    <name>A0A392UF90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010794729">
        <property type="protein sequence ID" value="MCI71354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UF90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8810" checksum="CD81B234EB9BD80F" modified="2018-12-05" version="1" fragment="single">YRVRADLARFDRNDTLADKSLWTERDGLSKGGKDVVTKDGYHWSERTAVHKSADDQNATKGMKAKICDAIVADSVKDGPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULN9</accession>
    <name>A0A392ULN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010840962">
        <property type="protein sequence ID" value="MCI73554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4375" checksum="84BD2237198D1FA5" modified="2018-12-05" version="1" fragment="single">RSPGEDLESPGDVLDVARRGGGEEVARARQMSPKKGKHSVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN06</accession>
    <name>A0A392UN06_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010873513">
        <property type="protein sequence ID" value="MCI75023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN06"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7768" checksum="0A63DD9DABFB39D7" modified="2018-12-05" version="1" fragment="single">KRGRSLEPRRNRRSHDISGDRAARVILVTPIRGSKMRVVVMTRWCRATRSMVTAIASTCRFAMLGHQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UN39</accession>
    <name>A0A392UN39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832717">
        <property type="protein sequence ID" value="MCI73175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UN39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6383" checksum="3C62129DF2DBA913" modified="2018-12-05" version="1" fragment="single">FILSPVGEGKVPSVPEVAEKWASPVVQVEPSQQPTSSSSAYRESSSSSRSFFDSVVLVLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UW03</accession>
    <name>A0A392UW03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010970850">
        <property type="protein sequence ID" value="MCI79302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UW03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6150" checksum="35A883354CB675FB" modified="2018-12-05" version="1" fragment="single">MAAAARTSAQIVEALATLTNIVARDNLPGRDGEMRLERLMKQKPPTFTGGYNPDGAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYL7</accession>
    <name>A0A392UYL7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010984934">
        <property type="protein sequence ID" value="MCI79961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYL7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="60" mass="6787" checksum="937F5C5B6E96BCC1" modified="2018-12-05" version="1" fragment="single">MAARTNAQIAEALATMAEIMARDHQPGREDETRLERFMKHKPPTFTGGYNPEGAVNWLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZV0</accession>
    <name>A0A392UZV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">U-box domain-containing protein 19-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010997516">
        <property type="protein sequence ID" value="MCI80519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI80519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7626" checksum="AB9CD96FFBAA37ED" modified="2018-12-05" version="1" fragment="single">ALVSILASSDKEELVTEALAVLAALAENFDGANAVCEASALTLIIGMLRSSTSHVGKEHCASILLSLCVNVGVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0G2</accession>
    <name>A0A392V0G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerate dehydrogenase HPR peroxisomal</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010983433">
        <property type="protein sequence ID" value="MCI79880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52283">
        <property type="entry name" value="Formate/glycerate dehydrogenase catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-isomer specific 2-hydroxyacid dehydrogenase catalytic" evidence="1">
        <location>
            <begin position="11"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5466" checksum="586A98D898D1E67A" modified="2018-12-05" version="1">MFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPVSYPFSISHFYSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V3I8</accession>
    <name>A0A392V3I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011020646">
        <property type="protein sequence ID" value="MCI81505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V3I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2678" checksum="2005F1E6BAFC2918" modified="2018-12-05" version="1" fragment="single">MCHRSGLEKLEYKGMEVILTLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6U4</accession>
    <name>A0A392V6U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011080769">
        <property type="protein sequence ID" value="MCI84016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8098" checksum="DEF1E704B296C863" modified="2018-12-05" version="1" fragment="single">EMTRSVSRFPLCWSRKHFEKSTDYYLTKEETMSEEDLVDLESLKAVVKSFKPARWESKAGVPVLDGNANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6V9</accession>
    <name>A0A392V6V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011046881">
        <property type="protein sequence ID" value="MCI82575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="11"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3316" checksum="B628A1D2FF7FF482" modified="2018-12-05" version="1" fragment="single">VGFSEVGNSEGITIASGETSTSGITGSEGSGLLIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V987</accession>
    <name>A0A392V987_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011066489">
        <property type="protein sequence ID" value="MCI83415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V987"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF430">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7768" checksum="A82ABFC8D22AB822" modified="2018-12-05" version="1" fragment="single">MLEVYMDDMIIKSQEETDHAAHLRRVFEQARKCKMRFNPKKCTFGVRAGKFLGFYLTERGIEANPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAX9</accession>
    <name>A0A392VAX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011080756">
        <property type="protein sequence ID" value="MCI84015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3051" checksum="C57915516C3DFE0E" modified="2018-12-05" version="1" fragment="single">ICKIRPVFVAFWWCLGLRSVVFSEPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VCS8</accession>
    <name>A0A392VCS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enzymatic polyprotein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011087392">
        <property type="protein sequence ID" value="MCI84290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VCS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4981" checksum="E6D54650FE578031" modified="2018-12-05" version="1" fragment="single">MKENAELFAVFASLKLESKVEVEELPVVCEFPDVFPGDVSDVPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VF03</accession>
    <name>A0A392VF03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011140877">
        <property type="protein sequence ID" value="MCI86447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VF03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2998" checksum="D7AC740474D3A5A1" modified="2018-12-05" version="1" fragment="single">IKGGYVSVIRLEFGLSWPKHGLVSAGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFU7</accession>
    <name>A0A392VFU7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011137262">
        <property type="protein sequence ID" value="MCI86322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFU7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7570" checksum="C0918F9D3138B7D2" modified="2018-12-05" version="1" fragment="single">KLGLVPSNSPSALETAVVGEFIVGWPSSFIDVATLSEHVELDIAVATIVVDATPTPTYGGMYARHIDGWNGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VI27</accession>
    <name>A0A392VI27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011182150">
        <property type="protein sequence ID" value="MCI88048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VI27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5712" checksum="DBDA5D4452E71AD3" modified="2018-12-05" version="1">MGKYLSKNFTSSSCQVVMVLGGIVSNQSFALPDNEYLNSLNLFADSDTFDGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIS7</accession>
    <name>A0A392VIS7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011152028">
        <property type="protein sequence ID" value="MCI86871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIS7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3003" checksum="FF93F02F472212D2" modified="2018-12-05" version="1" fragment="single">MGSVEEVKEGYVQSFVTGGIWDPDFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VL34</accession>
    <name>A0A392VL34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011157838">
        <property type="protein sequence ID" value="MCI87110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VL34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3621" checksum="7556C48B3D808FA8" modified="2018-12-05" version="1">MAENFQVPGEHWRAKATLSLSDDIPHSATLGQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLX5</accession>
    <name>A0A392VLX5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011204804">
        <property type="protein sequence ID" value="MCI88887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLX5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="36"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4504" checksum="2ECAB4F712912745" modified="2018-12-05" version="1" fragment="single">TLELEEEAAAVEAAKGPSQANSDDHADEGDGDDMQGGDSDASPSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VS03</accession>
    <name>A0A392VS03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011264606">
        <property type="protein sequence ID" value="MCI91164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VS03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3528" checksum="904928EF46F60153" modified="2018-12-05" version="1" fragment="single">PPPHSRFHPKFHLQDVALILGGAIVSIDIASPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWA2</accession>
    <name>A0A392VWA2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011281991">
        <property type="protein sequence ID" value="MCI91773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6220" checksum="0963E16A322B9F48" modified="2018-12-05" version="1" fragment="single">MAVARTNAQIVEALATLTNIVARDNLPGRGGEMRLERFIKQKPPTFTGGYNPDGAYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWG0</accession>
    <name>A0A392VWG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011283440">
        <property type="protein sequence ID" value="MCI91833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5690" checksum="0BAB06E0F158A867" modified="2018-12-05" version="1" fragment="single">MVTTPPFSSWYFIFRCTVEGTALSVAKVGRPKMQLYGDSHGITRNCTSTVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0P7</accession>
    <name>A0A392W0P7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011311010">
        <property type="protein sequence ID" value="MCI92811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0P7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6723" checksum="F694EFE29B52EE6C" modified="2018-12-05" version="1" fragment="single">MHLPWDKDLLELAMVAMDMPMVAADREMETIVENVIHHDHCVFPYHDHRSHCFGHRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0W7</accession>
    <name>A0A392W0W7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011342232">
        <property type="protein sequence ID" value="MCI93907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0W7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="68" mass="7301" checksum="2AC5B7E9A918E259" modified="2018-12-05" version="1" fragment="single">GFSEIRDFPSLVNKSRIYDKDSRAKASYYKAVNEKKGNDFGRGKPYGRGGKKPDEGGSSGGRGGGARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W556</accession>
    <name>A0A392W556_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011339217">
        <property type="protein sequence ID" value="MCI93800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W556"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3830" checksum="895640328C42215B" modified="2018-12-05" version="1" fragment="single">MDLGVGDDAKSSMAISNVDGALVTPIGITKNLKWPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W918</accession>
    <name>A0A392W918_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011423377">
        <property type="protein sequence ID" value="MCI96766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W918"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7636" checksum="A110A1009673B59F" modified="2018-12-05" version="1" fragment="single">DYKNKYDLQQKLVKDLEVAEVKLVEVTQERDALLVTVKGLEERVCVLEDKLKEAEGRGMEEVITEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WA60</accession>
    <name>A0A392WA60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011447366">
        <property type="protein sequence ID" value="MCI97558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WA60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="7"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7501" checksum="CE4A2A87F81F96A2" modified="2018-12-05" version="1" fragment="single">TSAFLQVTTCEDNIAKWKADIREYEEKIAEAKKQIALEEIKKQEFDAQAVEVPRAKIDELAHAGIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WCC3</accession>
    <name>A0A392WCC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011468975">
        <property type="protein sequence ID" value="MCI98274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WCC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI98274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4953" checksum="23A5AE89726724FF" modified="2018-12-05" version="1" fragment="single">QLSVRFANAPLLGVRDTVTDEDSALSGPGGWLRLSGKPMPRWTWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWQ7</accession>
    <name>A0A392MWQ7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010020433">
        <property type="protein sequence ID" value="MCH91435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWQ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.340.70:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon gypsy-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="7">
        <location>
            <begin position="258"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH91435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="415" mass="47656" checksum="AF5B2BE8D8E0EFDC" modified="2018-12-05" version="1" fragment="single">MSEVPVLSLPNFEEKFVLETDASGTGMGAVLIQNGHPICYFSKQFCPKMLQASTYVRELCAITTAVKKWRTYLLESTFTIYTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIVYKPGPQNRVADALSRVHCLVITVPHLDFITTFKQQLLDDTEFQQLLTKVQDKPEEHKEFDMIDGLLFYKGKLFIPPNSPLKQTLLEEFHSSVIGGHSGIHRTFGRLQENVFWQGMRGDVVQFVKSCSICQQTKPTNHLPYGLLQPLPVPIRVWEDVSLDFIVGLPSFQTHTAILVVVDRLSKAAHFGSLPTHFTATKVAELFAKMICKLHGMPRSIVSDRDPIFLSHFWQDLFRLSGTKLRMSTTYHPQSDGQTEIVNKMLQQYLRCFVHDKPKQWGRLLHWAEWHYNTAIHTSTGLSPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N4U4</accession>
    <name>A0A392N4U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transposase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026728">
        <property type="protein sequence ID" value="MCH94189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N4U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006564">
        <property type="entry name" value="Znf_PMZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973:SF166">
        <property type="entry name" value="OS10G0104700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31973">
        <property type="entry name" value="POLYPROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00575">
        <property type="entry name" value="ZnF_PMZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="5">
        <location>
            <begin position="232"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH94189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="338" mass="38750" checksum="EC51854B352046C6" modified="2018-12-05" version="1" fragment="single">TSVDGNDGIFPVAFAVVDAETEDNWHWFLQELKSALSTTEQITFVADFQNGLKTSLSEIFENCYHGYCLRHLADKLNRDLKGQFSHEARRFMVNDFYAAAYASKPEIFERSIENIKGISPDAYNWVIQSEPEHWSNAFFNGARYNHMTSNFGQQFYSWVSEAHELPITQMIDVLRGNMMETISTRREESNQWMTKLTPSKEEIIQKETSDARSLQVLLSQGTTFEVCGESVEIVDIDTWDCSCKGWKLTGLPCCHAIAVFECIGRDLYDYCSRYFTVESYRLTYAEPIHALPDIDRPVQVESAMETVTVTPPPTKRPPGRPKTKQVESIDIIKRQLQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8W7</accession>
    <name>A0A392N8W7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uroporphyrinogen decarboxylase 1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010031750">
        <property type="protein sequence ID" value="MCH96191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8W7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21091">
        <property type="entry name" value="METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21091:SF167">
        <property type="entry name" value="UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="UROD/MetE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00906">
        <property type="entry name" value="UROD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00907">
        <property type="entry name" value="UROD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uroporphyrinogen decarboxylase (URO-D)" evidence="1">
        <location>
            <begin position="16"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="Uroporphyrinogen decarboxylase (URO-D)" evidence="2">
        <location>
            <begin position="135"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH96191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19071" checksum="007D349361BFB94E" modified="2018-12-05" version="1" fragment="single">PLLVKAARGDLVSRPPAWMMRQAGRYMAVYQKLAQKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGINFDIEDVRGPVIQSPIRSEDGLKVLHPIDFDKLRFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGDSRLHRFPSGIRGSLYTNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NCK6</accession>
    <name>A0A392NCK6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">acyl-CoA oxidase</fullName>
            <ecNumber evidence="3">1.3.3.6</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2,3-saturated acyl-CoA + O2 = a (2E)-enoyl-CoA + H2O2</text>
            <dbReference type="Rhea" id="RHEA:38959"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:58856"/>
            <dbReference type="ChEBI" id="CHEBI:65111"/>
            <dbReference type="EC" id="1.3.3.6"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.3.6" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010035353">
        <property type="protein sequence ID" value="MCH97587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NCK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005777">
        <property type="term" value="C:peroxisome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003997">
        <property type="term" value="F:acyl-CoA oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005504">
        <property type="term" value="F:fatty acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033540">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA oxidase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055088">
        <property type="term" value="P:lipid homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000007">
        <property type="entry name" value="Acyl-coenzyme A oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012258">
        <property type="entry name" value="Acyl-CoA_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002655">
        <property type="entry name" value="Acyl-CoA_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909:SF352">
        <property type="entry name" value="ACYL-COENZYME A OXIDASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10909">
        <property type="entry name" value="ELECTRON TRANSPORT OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01756">
        <property type="entry name" value="ACOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA oxidase C-terminal" evidence="7">
        <location>
            <begin position="21"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCH97587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="174" mass="19348" checksum="7A2C8E19F430BBC8" modified="2018-12-05" version="1">MNKSCPVIPSQLTSSTIKSSEFQIDLFHLRERDLLKRFAEEVSEHQSQGNSKESAFILSYQLAEDLGRAFSERAILKTFMEAESALPAGSLKDVLGLLRSLYALISVDEDAAFLRYGYLSTENASAVRKEVPKLCAELRPHALALVNSFGIPDAFLSPIAYNWIESNSWSTAQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL17</accession>
    <name>A0A392NL17_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glucan 13-beta-glucosidase</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 5 (cellulase A) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041320">
        <property type="protein sequence ID" value="MCH99785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL17"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051017">
        <property type="term" value="P:actin filament bundle assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016477">
        <property type="term" value="P:cell migration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007163">
        <property type="term" value="P:establishment or maintenance of cell polarity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010431">
        <property type="entry name" value="Fascin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001547">
        <property type="entry name" value="Glyco_hydro_5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10551">
        <property type="entry name" value="FASCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10551:SF9">
        <property type="entry name" value="FASCIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00150">
        <property type="entry name" value="Cellulase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 5" evidence="5">
        <location>
            <begin position="5"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH99785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="11292" checksum="A07EF3002F6E28D8" modified="2018-12-05" version="1" fragment="single">MEDFKFLYEHGINTVRIPVGWWIAYDPDPPNPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPGSQNGMEHSASIDGFTEWPTSPDYISKSLRVIEFLIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLT8</accession>
    <name>A0A392NLT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040288">
        <property type="protein sequence ID" value="MCH99434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NLT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06222">
        <property type="entry name" value="RNase_H_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053151">
        <property type="entry name" value="RNase_H-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044730">
        <property type="entry name" value="RNase_H-like_dom_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723">
        <property type="entry name" value="OS05G0353850 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47723:SF23">
        <property type="entry name" value="REVERSE TRANSCRIPTASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="164"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="35458" checksum="6D93F3DA707F3EE9" modified="2018-12-05" version="1">MHNKVPTDENLMIRGCYMPSMCSICKCKVESSFHIFFECSFAIKTWSWLASCLNVVLQFNSIEDIWNLCDANWSPQCKVTIIAAIIYLINTVWFVRNQARFQNNLIPWNSAIALIIANTSLTGNHTGKSSSNSVRDFSFLKCFKINIHRPKATVLKEICWQPPLLNWFKCNIDGASNGNPGLASCGGIFRSYSADFVLGFAEPLGVTTSYYAELCGAMRAIEIASQNHWHNIWIETDSALVVSAFQKPQNPVPWPIRNRWKNTLHMAKSMNFIITHIFREGNQVADLLANHGLTLDSIFYWHLPPLFIMELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM16</accession>
    <name>A0A392NM16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LRR receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044516">
        <property type="protein sequence ID" value="MCI00881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052059">
        <property type="entry name" value="CR_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47973">
        <property type="entry name" value="CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI00881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11229" checksum="8A80A44A15AC7E14" modified="2018-12-05" version="1" fragment="single">LDKDLNPKISDFGLAKLKDDGYTHITTRVAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKHNTMNWPRDECFSLVDWVHLLKEEGNIMDLIDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNT1</accession>
    <name>A0A392NNT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">BTB/POZ domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the NPH3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044533">
        <property type="protein sequence ID" value="MCI00890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NNT1"/>
    <dbReference type="UniPathway" id="UPA00143"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043454">
        <property type="entry name" value="NPH3/RPT2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027356">
        <property type="entry name" value="NPH3_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32370">
        <property type="entry name" value="OS12G0117600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03000">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51649">
        <property type="entry name" value="NPH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0833">Ubl conjugation pathway</keyword>
    <feature type="domain" description="NPH3" evidence="3">
        <location>
            <begin position="77"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI00890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="317" mass="35418" checksum="9410A83C921C89A3" modified="2018-12-05" version="1" fragment="single">MNEKYGEGNLVEVAETFLNEVFSNWTDSIKVLQTCEEVKPYAEDLRIVSRCIDSLTIKACSEDILCSETKSQASSDDWWYEDLCLLSLPLYKRLIVSIESKGMKPENVAASLIYYLRRFIPMMNRQSSFNDKTSVSQGTTPSRGSEATQRALLEEIVGLIPNKKCVTPSKYLLRLLKTAMILHASSSCIENLEKRIGSQLDQVELVDLLIPNMGYSVETLYDIDCIQRIIDHFMSMYQPSTTATSPLCIAEEGSLIGGVDALTPMTIVANLLDAYLAEVALDVNLKLPKFQALAASIPDYARPLDDGLYHAIDVYLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NP22</accession>
    <name>A0A392NP22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044310">
        <property type="protein sequence ID" value="MCI00816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NP22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7556" checksum="B3EE7ED7B72264A4" modified="2018-12-05" version="1">MASPDKLSYSIVQLVADPLVGGGNIFLVESEGDLLLVHAYECLCIDLNDPLRIERFPSMLSCIERFPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPE8</accession>
    <name>A0A392NPE8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">G-type lectin S-receptor-like serine/threonine-protein kinase CES101-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044900">
        <property type="protein sequence ID" value="MCI00989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPE8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002">
        <property type="entry name" value="RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002:SF1075">
        <property type="entry name" value="RECEPTOR-LIKE SERINE_THREONINE-PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0430">Lectin</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017302402" evidence="6">
        <location>
            <begin position="22"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI00989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9927" checksum="DE32DD1944724C60" modified="2018-12-05" version="1">MFFFIFFFLFMYLQQIPNTRSNGDDLLHFEVGMSVKNSVFVKEDKGAKLKKKEVKLPLFSFVSVSAATNNFSDANKLGEGGFGPVYKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NRT8</accession>
    <name>A0A392NRT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010049518">
        <property type="protein sequence ID" value="MCI02567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NRT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.10:FF:000366">
        <property type="entry name" value="Pentatricopeptide (PPR) repeat-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046849">
        <property type="entry name" value="E2_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046848">
        <property type="entry name" value="E_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF386">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20431">
        <property type="entry name" value="E_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20430">
        <property type="entry name" value="Eplus_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="DYW" evidence="3">
        <location>
            <begin position="144"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI02567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="236" mass="26806" checksum="86D06CE5570B6F17" modified="2018-12-05" version="1">MEHYACMVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFVLEPDNPGNYILLSNIYASKGMWDEENRIRDMMKSKGLKKNPGYSWIEIGQRVHTLLSGDKSHPQMKEILEKSEKLSIEIKKSGYLPMTKSVLQDVEEQDKEQILCGHSEKLAVVLGLINTSPGQPLQVIKNLRICDDCHAVIKIISRLEGREIFVRDTNRFHHFKDGVCSCGDFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYH8</accession>
    <name>A0A392NYH8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell wall protein AWA1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010052579">
        <property type="protein sequence ID" value="MCI03555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYH8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044277">
        <property type="entry name" value="GIP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775:SF1">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="172" mass="18746" checksum="8924BC779A7E9D4A" modified="2018-12-05" version="1">MMNHVFQLNSQNGAVTSEVEDYPDHPQSPNNVPVNLESSEVDGSSSAIQEYNESKQDTALPHEGHQYSGVHISPNYSFGFVPPMLGTQLPPFDNSESQTRDISRLPSFIMHPQLDPASYYAQFYRPGADNDGRLSPFASAGATTKYNGNVAVLPTPNSQSPQEGCEQVELSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1R8</accession>
    <name>A0A392P1R8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060397">
        <property type="protein sequence ID" value="MCI06001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P1R8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10452" checksum="ECCC66F7584DA9C6" modified="2018-12-05" version="1">MEQNHTQGKQTLVSLKRKHTSYCDNWFRESPKRTRQHTSIRSWQPKSPVLMPPGDLVKRNRRRSRLAPPVMVAVACRRRGCWSTLVVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3K4</accession>
    <name>A0A392P3K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dual specificity protein kinase splA-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062530">
        <property type="protein sequence ID" value="MCI06641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3727" checksum="9DA36D761EC0F9E5" modified="2018-12-05" version="1">MTVANPREVPEYELNPLELQVRKSDGISTITIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P5F3</accession>
    <name>A0A392P5F3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chromatin-remodeling ATPase INO80</fullName>
            <ecNumber evidence="5">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Component of the INO80 chromatin-remodeling complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">The DBINO region is involved in binding to DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SNF2/RAD54 helicase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="5"/>
    <dbReference type="EMBL" id="LXQA010063826">
        <property type="protein sequence ID" value="MCI07002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P5F3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031011">
        <property type="term" value="C:Ino80 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006338">
        <property type="term" value="P:chromatin remodeling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18793">
        <property type="entry name" value="SF2_C_SNF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050520">
        <property type="entry name" value="INO80/SWR1_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049730">
        <property type="entry name" value="SNF2/RAD54-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685:SF2">
        <property type="entry name" value="CHROMATIN-REMODELING ATPASE INO80"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45685">
        <property type="entry name" value="HELICASE SRCAP-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="2"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU368001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI07002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9984" checksum="9BB4AEEB6C1C9FFB" modified="2018-12-05" version="1" fragment="single">MDLFCNTLLLSSAVLFENVDLNRLSLIQEANANFKAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9D2</accession>
    <name>A0A392P9D2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068886">
        <property type="protein sequence ID" value="MCI08394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9D2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427">
        <property type="entry name" value="DUF4283 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34427:SF5">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="RRM" evidence="3">
        <location>
            <begin position="8"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="90"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="104"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI08394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="261" mass="30852" checksum="B3DDA6BD9AF884E5" modified="2018-12-05" version="1" fragment="single">MVDETRLTTYFFSDIPDSFGAKAMLNIFQKYGDAVEVVIPAKRDKGGRRFGFARFEHVRDVRKFGIELDNIIIGRDKIYVNVSRFQREERNSRYTQREGGNVHGRREERHEHHVEKMRKNQKDATYRKDEKSYAQAVQGEKLRNQRRIIQAPRWSYTVGKDTLLSLQKSYVGEVVHPGMSYNIQDEFHRQGYFGIKITPLGANLVLLEEQEEGEVRALIEDAKSWMEQWFREIRPWSTREVDSSRLVWLRVYGIPVHAWNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PA85</accession>
    <name>A0A392PA85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">E3 ubiquitin-protein ligase XBOS32</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066726">
        <property type="protein sequence ID" value="MCI07805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PA85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="entry name" value="Ankyrin repeat-containing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="Ankyrin repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50297">
        <property type="entry name" value="ANK_REP_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="2">
        <location>
            <begin position="29"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6400" checksum="8D881F535BF8C645" modified="2018-12-05" version="1" fragment="single">MLLKHSLGVSAGFSHFNLLLNLRSIGLSSGSTPLHYAACGGNAQCCQLLIAKGASLTAENANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDK3</accession>
    <name>A0A392PDK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA polymerase sigma factor sigF chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073034">
        <property type="protein sequence ID" value="MCI09540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PDK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI09540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="124" mass="13682" checksum="8EBF763477B41E30" modified="2018-12-05" version="1" fragment="single">VTLNTRVMDMASVCEKNNIGDVDESAHNHMRKLHLRCHLQNLLAYSPEGDFVSSSSTMQPADDFQFNALTLAKQALSASRQAAVVAEELKLIKVVDNDDNSLPLGLVLALWLTLASLVWLFICL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PE68</accession>
    <name>A0A392PE68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076098">
        <property type="protein sequence ID" value="MCI10403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PE68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14454" checksum="1052D3A15E1F2DBB" modified="2018-12-05" version="1" fragment="single">EVSSQQCQTGQRGPRTEALINTNGNNAQVNNETDIVGPNGNNGNGNGRRGRNSPEPHSSDNEDSRDYRHEDNRGMSPVLHLGRTPFTLRILESRVPRTLEKPPKLETYDGTKDPDEHVEHDLVERSNQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHI9</accession>
    <name>A0A392PHI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptide transporter PTR3-A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010078250">
        <property type="protein sequence ID" value="MCI10950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="164"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI10950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="196" mass="21971" checksum="DF2207DBA8A4CC4B" modified="2018-12-05" version="1" fragment="single">MTKMIPILITTIIPSTLVVQATTLFIKQGTTLNRSMGPHFDIPPACLTAFITIFMLISXVVYDLVFVPMIRRYTRNPRGITMLQRLGIGLVLHIAIMVIACLVEKKRLRVARENNLFGRHDTIPLTIFILLPQFALSGIADNFVEIAKLEFFYDQAPQGMKSLGTSYFTTTLGLGSFLSTFLLSIIANITQRHGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJL8</accession>
    <name>A0A392PJL8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CNGC5-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081159">
        <property type="protein sequence ID" value="MCI11689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJL8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:monoatomic ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45651:SF112">
        <property type="entry name" value="CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0407">Ion channel</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="108"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI11689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14566" checksum="C353C7B2AA7F4CEE" modified="2018-12-05" version="1" fragment="single">FALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEEADESEGTHGNTGGSSSSLGAALLVSKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLR1</accession>
    <name>A0A392PLR1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084184">
        <property type="protein sequence ID" value="MCI12439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLR1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008390">
        <property type="entry name" value="AWPM-19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33294:SF11">
        <property type="entry name" value="ABA INDUCED PLASMA MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33294">
        <property type="entry name" value="AWPM-19-LIKE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05512">
        <property type="entry name" value="AWPM-19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8222" checksum="5E34315752043635" modified="2018-12-05" version="1" fragment="single">MQFCTTGPGFDLPAHFSPIYFPMGNAATGFFVTFALIAGVVGAGSLISGLNHIRSWTSESLPSAASVASIAWALTLLAMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMV1</accession>
    <name>A0A392PMV1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CCHC-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088188">
        <property type="protein sequence ID" value="MCI13423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="83" mass="9693" checksum="CEF81A2886566B28" modified="2018-12-05" version="1">MSLISRRISQIWRQRKNRIRNRSGRRPESSSGPTKPKTDREVICFECQDPRHYISECPTLADEKPKDKSVGTRLVSHLAPQEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PN40</accession>
    <name>A0A392PN40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088511">
        <property type="protein sequence ID" value="MCI13513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PN40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="62"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11603" checksum="CA999ED6AEED5E03" modified="2018-12-05" version="1" fragment="single">MANYHCHIPPSIEQIHQGNTPGKQRTRTSAFEQKKSSQPISPSTYKHGSALLITFKFRNKKEPENAGESENTIVDFSAGSNDADGGWGRRNCEKRNSITIVEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPW4</accession>
    <name>A0A392PPW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gypsy retrotransposon integrase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088558">
        <property type="protein sequence ID" value="MCI13529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9893" checksum="87C7DAB9AB9B92F4" modified="2018-12-05" version="1">MQSHHWVEHLLPILWSYHTTTHSSTCETPFKMVYGTDAMIPAEIDPPSWRTATLTVTENNEALKENLDLLEEVREAAHFREFIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR34</accession>
    <name>A0A392PR34_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Protein BIC1-like</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010088018">
        <property type="protein sequence ID" value="MCI13375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009785">
        <property type="term" value="P:blue light signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22645">
        <property type="entry name" value="BIC1_CID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040374">
        <property type="entry name" value="BIC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34207">
        <property type="entry name" value="PROTEIN BIC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34207:SF2">
        <property type="entry name" value="PROTEIN BIC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI13375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="120" mass="13636" checksum="722157B4615CEF42" modified="2018-12-05" version="1" fragment="single">DDDDDDDDDDDDDDKDKDKDATTQNPSLLCNKDKDVEAKELTSVEEECSERERLKRHRVEVAGRVWIPEIWGQEDLLKDWIDCTAFDAPLVPSKITMARAALVQEGTKTNATPLSIENRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZ85</accession>
    <name>A0A392PZ85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105562">
        <property type="protein sequence ID" value="MCI17463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZ85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2918" checksum="B6EA7880F4A78AAA" modified="2018-12-05" version="1" fragment="single">CDIPNSLGFGTSCADAGDVYPAQELKFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0L4</accession>
    <name>A0A392Q0L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104618">
        <property type="protein sequence ID" value="MCI17260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q0L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8758" checksum="D00BED34CC5DBD53" modified="2018-12-05" version="1" fragment="single">KITNGYICTSQNDAIFIQTVTWIQPSGLKNIQRPIFNHKANERAQGSEAVCPFRSHLLVRTNLAKSKNDDLEKSATKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q2C9</accession>
    <name>A0A392Q2C9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclin-dependent kinase F-4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109330">
        <property type="protein sequence ID" value="MCI18264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q2C9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8756" checksum="E8EF680DA9290F73" modified="2018-12-05" version="1" fragment="single">SCFYIPPSLRSRAVARTPPPGTRSALVDQQGVKRYPGALPNSKPTNYFPSPKVQPSSGDPVDLSYLLISSMNACIMSDKMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q3L0</accession>
    <name>A0A392Q3L0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein 52</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110286">
        <property type="protein sequence ID" value="MCI18472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q3L0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000938">
        <property type="term" value="C:GARP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019905">
        <property type="term" value="F:syntaxin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032456">
        <property type="term" value="P:endocytic recycling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006896">
        <property type="term" value="P:Golgi to vacuole transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042147">
        <property type="term" value="P:retrograde transport, endosome to Golgi"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007258">
        <property type="entry name" value="Vps52"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14190">
        <property type="entry name" value="SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14190:SF7">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 52 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13612" checksum="1AC429851C3202D0" modified="2018-12-05" version="1" fragment="single">EELLQEHFNDLIKFVKAKASEDPTSGPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEIRKYSRTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q763</accession>
    <name>A0A392Q763_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010117479">
        <property type="protein sequence ID" value="MCI19974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q763"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF3">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="33"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="23880" checksum="A97C778309EA15DF" modified="2018-12-05" version="1" fragment="single">GEDPHKHLKEFQVVCSTPLRPEGITEDHVKLRAFPFSLQGAAKDWLYYLEPNYVSSWADLKKVFLEKYFPASRAASIRKEICGIRQGNETLAEYWERFKQLVSSCPQHQITEQLLIQYFYEGLQPMDRSILDAASGGALVDKTPAAAKTLIENMSLNSQQFSIRNNAVNQKGVNEIQASSSSIKALETRFETRIDELTSLVKQLAVNKPQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QCW2</accession>
    <name>A0A392QCW2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010128988">
        <property type="protein sequence ID" value="MCI22171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QCW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI22171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="13892" checksum="D2F4A5F0AEE0BF04" modified="2018-12-05" version="1" fragment="single">MGCSEENKVTLGTYMLREEANHWWKNARQRLGVGGVVITWERFKREFLIKYFPADVRNRKVVEFMELKQGMNKSRICDEDGRAKSNYYKAVKDKKRKEQDCGKSYGDENKRDGESSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QF98</accession>
    <name>A0A392QF98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent DNA helicase pcrA</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132679">
        <property type="protein sequence ID" value="MCI22838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QF98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7466" checksum="8E486339FB3A439F" modified="2018-12-05" version="1" fragment="single">IDILCEQKSAEKAGQGLDNSCQEKVSSESGVVGNVDLSLGTIVVSEGIGNGDMFSSGIALDHKEEHVDSETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGT6</accession>
    <name>A0A392QGT6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136980">
        <property type="protein sequence ID" value="MCI23611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGT6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13489" checksum="94DDD7C6FCE9366E" modified="2018-12-05" version="1">MAAALYDQHWRMDWGLPHFSPPLMAAVQDYRSRTPVPSYYQQYPQVADIEGHFGRQTTRLLEHQTHVRGMWDREYELHHLEQDQEAQAIDFARRLEADLMEPFFTAPGGSSSQGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQW2</accession>
    <name>A0A392QQW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151883">
        <property type="protein sequence ID" value="MCI26214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005770">
        <property type="term" value="C:late endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016197">
        <property type="term" value="P:endosomal transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901096">
        <property type="term" value="P:regulation of autophagosome maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007034">
        <property type="term" value="P:vacuolar transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039272">
        <property type="entry name" value="CLEC16A/TT9"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21481">
        <property type="entry name" value="PROTEIN CLEC16A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21481:SF4">
        <property type="entry name" value="PROTEIN TRANSPARENT TESTA 9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8433" checksum="29DB25DAADF18188" modified="2018-12-05" version="1" fragment="single">KQSMDLNKLVSHTLINPGPDSTSTILAAIDEIEDNLYYVSDIVSAGIPDVGRLITDSILTVLIFPLLLPSLRIAIDNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QW30</accession>
    <name>A0A392QW30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163559">
        <property type="protein sequence ID" value="MCI28102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QW30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9217" checksum="6247BC5BD016D9E1" modified="2018-12-05" version="1">MRNVIFGWNLSLNRHKTHHVRVGRALQRKLANLHVLELSPGKLGRQVARCSPALARGRFSSALFSPVVASPRWASSTGTDLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZF4</accession>
    <name>A0A392QZF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isoamylase 2 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010171347">
        <property type="protein sequence ID" value="MCI29264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02856">
        <property type="entry name" value="E_set_GDE_Isoamylase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044505">
        <property type="entry name" value="GlgX_Isoamylase_N_E_set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004193">
        <property type="entry name" value="Glyco_hydro_13_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43002">
        <property type="entry name" value="GLYCOGEN DEBRANCHING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02922">
        <property type="entry name" value="CBM_48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="E set domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 13 N-terminal" evidence="2">
        <location>
            <begin position="16"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI29264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="15762" checksum="94893DFC9F308956" modified="2018-12-05" version="1" fragment="single">MENLLPSLELFPDGFSNFAVFSRHAESVVLCLYDNDDDTGVEKPALEIDLDPYVNRSGDIWHISFESARNFVRYGYRFRGASEDNSYAECVVLDPYARIVGDSFQNGVGSARNLGLLKKEPAFDWGDDYHPNLEMEKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0B3</accession>
    <name>A0A392R0B3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">valine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Valyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>tRNA(Val) + L-valine + ATP = L-valyl-tRNA(Val) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:10704"/>
            <dbReference type="Rhea" id="RHEA-COMP:9672"/>
            <dbReference type="Rhea" id="RHEA-COMP:9708"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78537"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.9" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010176570">
        <property type="protein sequence ID" value="MCI30041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R0B3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.740.10:FF:000005">
        <property type="entry name" value="Valine--tRNA ligase, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="entry name" value="Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002303">
        <property type="entry name" value="Valyl-tRNA_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946:SF109">
        <property type="entry name" value="VALINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946">
        <property type="entry name" value="VALYL-TRNA SYNTHETASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="ValRS/IleRS/LeuRS editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Leucyl-tRNA synthetase editing" evidence="10">
        <location>
            <begin position="36"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00047552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI30041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14264" checksum="1FE85B29FB083CA3" modified="2018-12-05" version="1">MEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYSQFHGKYAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFKAREAITEALKKKVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6U4</accession>
    <name>A0A392R6U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194583">
        <property type="protein sequence ID" value="MCI32323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="149" mass="17620" checksum="747BF6526BCE5BE0" modified="2018-12-05" version="1" fragment="single">MAPKRSRTTVSSSSSQNYIHFLNDDKEDHYETIRQKGVVQERSIDFPSITSYPRMRQIIEGYIWMNFNNMIGVCNISWVKEFYVKSFGREANDYTSFMRGVEINYVSDEIDAIFGFIPEEHCMVVQRHTTGHTEEEYTEMLDDRNLYDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R9R4</accession>
    <name>A0A392R9R4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194335">
        <property type="protein sequence ID" value="MCI32305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R9R4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="20"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8876" checksum="90ACD5CC61920AED" modified="2018-12-05" version="1" fragment="single">SYQVHETASRTRLHNDHVNNLRSLHSNNSNTDGLLCGRDEQFSHKAGDGDAYKLRSVQFNNSNTAGMLCGREEQCLRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC34</accession>
    <name>A0A392RC34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010203656">
        <property type="protein sequence ID" value="MCI33350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RC34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4348" checksum="D1DAF411F27AAD02" modified="2018-12-05" version="1" fragment="single">MKGVGKNVVKYLNDFQFGVEIEVQKPFCIVPTGQHYCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RE42</accession>
    <name>A0A392RE42_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217523">
        <property type="protein sequence ID" value="MCI34831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RE42"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="12912" checksum="2E6EC48F97B7B5E7" modified="2018-12-05" version="1">MSKIGSGVKIIKSQQKVNPESKHWALRSNSLRVAQPPEEKQEKQGYTARCTGPSRALRQNQKVKLPLHLALRVAPIQAARCAGDRNQIPSHSMKCALRHSKLRVAPVPEDEEFVAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFH3</accession>
    <name>A0A392RFH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010214533">
        <property type="protein sequence ID" value="MCI34530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7864" checksum="87C09574D051DB52" modified="2018-12-05" version="1" fragment="single">SHVRAQDPVKKSSLETAQAEVTEPKLMSPKMEPRTPISAWKVAEKLAKVAIMRKSMNKVSDLHGFEDARF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RLA0</accession>
    <name>A0A392RLA0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010232670">
        <property type="protein sequence ID" value="MCI36316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RLA0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3242" checksum="37B3AEA1B62A106A" modified="2018-12-05" version="1" fragment="single">SVSGLVGYTLKHEALVEVTRLSEGYKLEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTR4</accession>
    <name>A0A392RTR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010264570">
        <property type="protein sequence ID" value="MCI39180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7617" checksum="5E2BC6A992288055" modified="2018-12-05" version="1" fragment="single">SMNLINKNLTRILRAQTLAWVILKQNQETGNAESPLKDKLVPETIPETETVVEDRDVNGYPWRRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RXK2</accession>
    <name>A0A392RXK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278115">
        <property type="protein sequence ID" value="MCI40306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RXK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="4214" checksum="A68DC5EDBA1345F3" modified="2018-12-05" version="1" fragment="single">MASSPTPPSQSSSATPPSKSSSPTPSASYMTPLPIAPSSPSHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0X7</accession>
    <name>A0A392S0X7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010305447">
        <property type="protein sequence ID" value="MCI42508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0X7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7094" checksum="E5DCFA5EF995117A" modified="2018-12-05" version="1" fragment="single">YIGHPFVITTLCRLRDVPTEDDTDEISPAERTLGRTYFQRAVRDLQAAEAAAPQPAAQQEQHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S375</accession>
    <name>A0A392S375_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010303102">
        <property type="protein sequence ID" value="MCI42326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S375"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="106" mass="12636" checksum="CD93BD7D7131C633" modified="2018-12-05" version="1" fragment="single">MGDKEQLIHIQKDKKNWCCRIDVKAKEEPTSQGWRMKVSLEELEEGLAELKMEEEQPCPDLDMNMLDIKEENRDVWTKRWGRYRKVAVKSKFGVHKIEVKKPPRPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8B1</accession>
    <name>A0A392S8B1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Superoxide dismutase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010327573">
        <property type="protein sequence ID" value="MCI44210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8B1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006801">
        <property type="term" value="P:superoxide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.200">
        <property type="entry name" value="Superoxide dismutase, copper/zinc binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036423">
        <property type="entry name" value="SOD-like_Cu/Zn_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001424">
        <property type="entry name" value="SOD_Cu_Zn_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00080">
        <property type="entry name" value="Sod_Cu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49329">
        <property type="entry name" value="Cu,Zn superoxide dismutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Superoxide dismutase copper/zinc binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5023" checksum="DC280D8EBF406A97" modified="2018-12-05" version="1" fragment="single">PHFNPNGKEHGAPEDEIRHAGDLGNINVGDDGMALLLYYLLFQATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9T3</accession>
    <name>A0A392S9T3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010346803">
        <property type="protein sequence ID" value="MCI45651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9T3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="67"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8579" checksum="0510E94968E73455" modified="2018-12-05" version="1" fragment="single">VENTSKDGDKGKRPTKVSAFARRKKATENPPKKRARKRPAQADETAHPVPEHHEVELDQAEHHQADVTEEGQSGDDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SB12</accession>
    <name>A0A392SB12_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative plant transposon protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010339113">
        <property type="protein sequence ID" value="MCI45065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SB12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046796">
        <property type="entry name" value="Transposase_32_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20167">
        <property type="entry name" value="Transposase_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative plant transposon protein" evidence="2">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI45065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12405" checksum="7C49FBE3C2184320" modified="2018-12-05" version="1" fragment="single">RPTKIRLGDFKPIARAWGEWVARNLIVLGNWSEYQLENVVLVKMIMESEDINLGYLLQQDIKRIASSDAAVFTLGHCNLITALCRRNNVPEEGEDDGVLEPVKGLDYKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SC33</accession>
    <name>A0A392SC33_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010344240">
        <property type="protein sequence ID" value="MCI45445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SC33"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9233" checksum="CE8C35ABC6578BFB" modified="2018-12-05" version="1" fragment="single">MWLQRSLSIIEVIWLLEEISRNRVCGSDRFLVSSDSDSVVTMVKNWTAENYIFPHDQALIAWVAEKVEGVPSKYSDEGSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SD37</accession>
    <name>A0A392SD37_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010362638">
        <property type="protein sequence ID" value="MCI46788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SD37"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="5665" checksum="EBBF2627251799AA" modified="2018-12-05" version="1" fragment="single">GERRLPDVVDTMLVEVLVTVAATVVAVSVAAMPLAAVVGVVVVAAVVTVVVAGAVITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SG23</accession>
    <name>A0A392SG23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010367937">
        <property type="protein sequence ID" value="MCI47144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SG23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3177" checksum="B1BFF1570159E20E" modified="2018-12-05" version="1" fragment="single">LNDGVVGEIQVGGYDHEPRTGLESSEKYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="28" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SGP3</accession>
    <name>A0A392SGP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 13">Belongs to the cytochrome P450 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010367336">
        <property type="protein sequence ID" value="MCI47105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SGP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052306">
        <property type="entry name" value="CYP450_71D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002403">
        <property type="entry name" value="Cyt_P450_E_grp-IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47953:SF19">
        <property type="entry name" value="OS06G0641600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47953">
        <property type="entry name" value="OS08G0105600 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00465">
        <property type="entry name" value="EP450IV"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="Cytochrome P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12 13" id="KW-0349">Heme</keyword>
    <keyword evidence="9 12 13" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 13" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="8 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR602403-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI47105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11080" checksum="751A7E8AEB37E7D4" modified="2018-12-05" version="1" fragment="single">WVEAESFKPNRFLNSSIDFKGADFEYIPFGAGRRMCPGVTFGLSNIELLLAQLLYHFDWKLPNGVENEELDMTESFGITVSRKNDLLLIPINRRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHF8</accession>
    <name>A0A392SHF8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010378219">
        <property type="protein sequence ID" value="MCI47867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHF8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3324" checksum="31FC54DA893B962A" modified="2018-12-05" version="1" fragment="single">SQWRAAPNCGKLLVKLLYPARGAVSVARGAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SV90</accession>
    <name>A0A392SV90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010452185">
        <property type="protein sequence ID" value="MCI52743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SV90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5050" checksum="52E8C38DC05A09EE" modified="2018-12-05" version="1" fragment="single">PQAAFLSLLQRKLQVSTQRACEKLIAKQKNSIQYVMEAVECGKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZW2</accession>
    <name>A0A392SZW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Plant organelle RNA recognition domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010478911">
        <property type="protein sequence ID" value="MCI54423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021099">
        <property type="entry name" value="PORR_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11955">
        <property type="entry name" value="PORR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PORR" evidence="1">
        <location>
            <begin position="2"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7001" checksum="0F66B9EEEFABC8F3" modified="2018-12-05" version="1" fragment="single">MAIELIHWNPNFAVSEVEALALKNGVEPKFSCSLPSSWVKSLEKFRDFESVPYVSPYSDPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T1M6</accession>
    <name>A0A392T1M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010475959">
        <property type="protein sequence ID" value="MCI54225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T1M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="23" mass="2440" checksum="5334F2B69B41EBE7" modified="2018-12-05" version="1" fragment="single">MVATATEGLWHLNQAAIVASDKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4L9</accession>
    <name>A0A392T4L9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010490962">
        <property type="protein sequence ID" value="MCI55116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4L9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9670" checksum="923F3AEAE7B8DE03" modified="2018-12-05" version="1" fragment="single">NIGTIFPRICSRILVLRRIGRSASPARRGGFAPRGGGALSQCIRLRSNSWAIGYRSPTSRRRSLGTCGLARHSITPTLWRFYERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4S3</accession>
    <name>A0A392T4S3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010491580">
        <property type="protein sequence ID" value="MCI55150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4S3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="10204" checksum="50AA3152EE5EF1E8" modified="2018-12-05" version="1" fragment="single">MNVEAYAKKFESLSRFFRFFRDGIDEVYMCCRFQGGLRYELQDAVVPLAIRHFQVLVEKCQEIEDMRSKRMNRQGNFSAGGPSRPSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4W4</accession>
    <name>A0A392T4W4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Copia protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010507008">
        <property type="protein sequence ID" value="MCI56099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4W4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8889" checksum="CDB752ECED8B20B8" modified="2018-12-05" version="1" fragment="single">ANPVFHERTKHIEMDCHVVRDKVQSGLIHLLPVPTKEQVADILTKSLHPGPFDTLQSKLGMIDIYSSLRGDDKTQGKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T525</accession>
    <name>A0A392T525_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Envelope-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010499145">
        <property type="protein sequence ID" value="MCI55614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T525"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="73" mass="7866" checksum="9DF5E91AFB742CC0" modified="2018-12-05" version="1" fragment="single">PSASEPTKTIKPTKKTSLKPALYGPKKTWSKGVSSIETRKKNLKRKKISSSDSKFDVEQDAIATSGTTVKGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7N9</accession>
    <name>A0A392T7N9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010523710">
        <property type="protein sequence ID" value="MCI57123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7N9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8297" checksum="93201DBF8C4A3293" modified="2018-12-05" version="1" fragment="single">MRVVAIAIAKSFMFHDHHVTCPVASIRTPPKISTVTITHLLPPSVDKLASLLSYVLFMKRSRLMVLERRKRSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T885</accession>
    <name>A0A392T885_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010527238">
        <property type="protein sequence ID" value="MCI57333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T885"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6198" checksum="C2F61A4087EC583A" modified="2018-12-05" version="1" fragment="single">VPEAPWPTSMAENSMCWVEAWPTSVKERKNYIENSRCFETPWPPLCRETPCVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8W8</accession>
    <name>A0A392T8W8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010531400">
        <property type="protein sequence ID" value="MCI57573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8W8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="3040" checksum="240D58592832D100" modified="2018-12-05" version="1" fragment="single">VIIVITMTDENEDLSSWSNWSNCNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T975</accession>
    <name>A0A392T975_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Membrane-bound transcription factor site-1 protease-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the peptidase S8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010521956">
        <property type="protein sequence ID" value="MCI56997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T975"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005794">
        <property type="term" value="C:Golgi apparatus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050131">
        <property type="entry name" value="Peptidase_S8_subtilisin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43806:SF7">
        <property type="entry name" value="MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43806">
        <property type="entry name" value="PEPTIDASE S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="6">
        <location>
            <begin position="2"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI56997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="8853" checksum="A535EBAAFBAD364D" modified="2018-12-05" version="1" fragment="single">RVKPDIVAYGRDIMGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPEPDRKNLLNPASMKQALVEGAAKLAGPNMYEQGAGRVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TA91</accession>
    <name>A0A392TA91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010538220">
        <property type="protein sequence ID" value="MCI57958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TA91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="7364" checksum="5910434EAF30BCFF" modified="2018-12-05" version="1" fragment="single">IVTAKPSQSRAHPSCGFGSRRGSVLDAAVAGKSDRPSCSYCLALEHVTDAVVTGELRVATPILELVSPAGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB62</accession>
    <name>A0A392TB62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010544752">
        <property type="protein sequence ID" value="MCI58349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="13"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9656" checksum="368912519CA320E2" modified="2018-12-05" version="1" fragment="single">ATASTSKDRGKASSLNESSPYFQENPETPPSKYQKEEPDSQLPDQGYSALAITSHHFPDTTSQNSTPDDDDQSSTRSKDSSTLAAGSESE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TGY1</accession>
    <name>A0A392TGY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010562159">
        <property type="protein sequence ID" value="MCI59366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TGY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4807" checksum="AE6D677529D94800" modified="2018-12-05" version="1" fragment="single">MSKADKHHKLSNLGPGQAATAIYQDIGPAKRNREVKPDTPLASPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THV1</accession>
    <name>A0A392THV1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010568103">
        <property type="protein sequence ID" value="MCI59676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THV1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5128" checksum="0DF807BB1800B7DF" modified="2018-12-05" version="1" fragment="single">MFSFTFDGGERKSDGFAGGGDIRSRDETFLGGDFRSVGFGGGGGMVEKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI12</accession>
    <name>A0A392TI12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010587949">
        <property type="protein sequence ID" value="MCI60781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7055" checksum="F29F0C4DF31DB4DE" modified="2018-12-05" version="1" fragment="single">MLWTALVKVLHEYSSYEAWNIGDGTTAGACNDCRIPDNTQIVDLVESIPDDVRLFNVAKLMKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIJ2</accession>
    <name>A0A392TIJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010588430">
        <property type="protein sequence ID" value="MCI60808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4700" checksum="FB0257AB035B7E79" modified="2018-12-05" version="1" fragment="single">QMNNPQNQNMGGSAAFREFCIMNPPEFIGEYVPAKAREWIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNC7</accession>
    <name>A0A392TNC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010622881">
        <property type="protein sequence ID" value="MCI62659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="3153" checksum="56D4B92F12D9E2DE" modified="2018-12-05" version="1" fragment="single">FTTSYQAEFCGAIRAIEIAHQMNWHNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRI4</accession>
    <name>A0A392TRI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nup133/Nup155-like nucleoporin</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010638747">
        <property type="protein sequence ID" value="MCI63528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRI4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3944" checksum="5D2F59374CC2E2FC" modified="2018-12-05" version="1" fragment="single">METSTLGDMSSSVETILMQHKDFPVAGKLMLMAVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSP7</accession>
    <name>A0A392TSP7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010637862">
        <property type="protein sequence ID" value="MCI63477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSP7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8723" checksum="3A5CDE1171D0667C" modified="2018-12-05" version="1" fragment="single">MENEKFLRELEYMLSPQELEYMLSPDYDTLTTNQASFEKSEAQVGNFIENAYDLEEQLVKIGMRQHAIVEQEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTN8</accession>
    <name>A0A392TTN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010632864">
        <property type="protein sequence ID" value="MCI63205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9213" checksum="3591DD408CACDEBD" modified="2018-12-05" version="1" fragment="single">RSIAGITDAMLDRFGEPYRVFKVVFRTIRGKGPLLGFLPRGVNVPSRAGVLPGVYYGDGASLSKVFSRRAYSRPIARFFLLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXC7</accession>
    <name>A0A392TXC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010678932">
        <property type="protein sequence ID" value="MCI65609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9365" checksum="34FFFBE3AF19CDE0" modified="2018-12-05" version="1" fragment="single">SVLVNGSPTDEFPFERGLRQEDPLSPFLFLLAVEGLHVLMEAMVERNLLTGYCVGDLVPVSISLLQFADDTLLMGTKSWANVRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TZI2</accession>
    <name>A0A392TZI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010679380">
        <property type="protein sequence ID" value="MCI65640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TZI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7613" checksum="0C5207E41E7B7A96" modified="2018-12-05" version="1" fragment="single">MGRYKRDAARKRMKDIGLQLSELQAAFDDYKNKYALQQKLVVDLEVTKAKLAEVTQERDALLVTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U331</accession>
    <name>A0A392U331_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010725720">
        <property type="protein sequence ID" value="MCI67873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U331"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6164" checksum="387D327F0308B647" modified="2018-12-05" version="1" fragment="single">MSKLSDDEAVLVEPNDEIEAPVKTNAETNVEASEVAKQIPATIQECELAYDSGVNKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U4K7</accession>
    <name>A0A392U4K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010717419">
        <property type="protein sequence ID" value="MCI67460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U4K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9140" checksum="E1D7EF96EE15C29F" modified="2018-12-05" version="1" fragment="single">AVNGAGGGGGEKETSKTSPKRHKIGESESEDDYDDYDDFDDDDDDERMQNVESTSMGTSGDRVVSKTEMKRGQPVQLMQFWTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5F7</accession>
    <name>A0A392U5F7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010741173">
        <property type="protein sequence ID" value="MCI68699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5F7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6272" checksum="5C24A4B75242F409" modified="2018-12-05" version="1" fragment="single">MNRDTWRDHNDVDVMYASKYAIDEKWFTVFLQLHTSAYGRAVAVALLKELLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U6S1</accession>
    <name>A0A392U6S1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cysteine-rich receptor-like protein kinase</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010737481">
        <property type="protein sequence ID" value="MCI68497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U6S1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="41" mass="4650" checksum="AD4897A99A33CE99" modified="2018-12-05" version="1" fragment="single">MQNPFTVSHLQFADDTLLLGTKSWVNVRALRAVLVLFETMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCC6</accession>
    <name>A0A392UCC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010754721">
        <property type="protein sequence ID" value="MCI69375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6481" checksum="30884FAEFB10B618" modified="2018-12-05" version="1" fragment="single">MNPPTFEEQYEPTEASEWFFRMEDMLEDLECTPAEKVTFATRFFRGSASNWWHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UEV6</accession>
    <name>A0A392UEV6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lysosomal beta glucosidase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010798425">
        <property type="protein sequence ID" value="MCI71548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UEV6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009251">
        <property type="term" value="P:glucan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="entry name" value="Glycoside hydrolase family 3 C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051915">
        <property type="entry name" value="Cellulose_Degrad_GH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30620:SF91">
        <property type="entry name" value="BETA-GLUCOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30620">
        <property type="entry name" value="PERIPLASMIC BETA-GLUCOSIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="Beta-D-glucan exohydrolase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="3983" checksum="BD79CE0A780CC2DD" modified="2018-12-05" version="1" fragment="single">MVIQPYVDTIDGLVTAWLPGSEGYGVTDVLFGDYGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHV4</accession>
    <name>A0A392UHV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010808856">
        <property type="protein sequence ID" value="MCI72026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4870" checksum="97AFDB3D976A97A3" modified="2018-12-05" version="1" fragment="single">MKIFGALLVSHAPPRAGAATGHVQLVQPASSSPVFLHAGHPTRFPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ62</accession>
    <name>A0A392UQ62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010891062">
        <property type="protein sequence ID" value="MCI75789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2924" checksum="BE61FB90968A5760" modified="2018-12-05" version="1" fragment="single">MEVVVIVVVAIVVVDEEFENSFPTFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UR66</accession>
    <name>A0A392UR66_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010868456">
        <property type="protein sequence ID" value="MCI74810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UR66"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4326" checksum="4CF7D6BB8C8E4991" modified="2018-12-05" version="1" fragment="single">MEISSKFTTPKFVTTLRKTIKFSGSKDESHIVIEPVNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY50</accession>
    <name>A0A392UY50_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011003265">
        <property type="protein sequence ID" value="MCI80787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY50"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3435" checksum="121E386D6225A54E" modified="2018-12-05" version="1" fragment="single">MQNCAELPAKCTPVHPDPSCTCPRSPHSNPLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VA63</accession>
    <name>A0A392VA63_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011076144">
        <property type="protein sequence ID" value="MCI83821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VA63"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6506" checksum="572610E5F057EE9A" modified="2018-12-05" version="1">MTSGWSSRADRPLGLLDSPAVEFPSYWALGPVQNSSLTNEGPIWLSHVRIRLVKDALGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VI97</accession>
    <name>A0A392VI97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011131999">
        <property type="protein sequence ID" value="MCI86110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VI97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6381" checksum="17859F4B6A18CCE2" modified="2018-12-05" version="1" fragment="single">MRVWRVPSSSSIFVVSVVVVSQAVLFLAPLGPTMPVSLLTWALLPFVLTLDSVCGPLWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIF9</accession>
    <name>A0A392VIF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011186610">
        <property type="protein sequence ID" value="MCI88188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2876" checksum="32E2FAF26BBF9AA7" modified="2018-12-05" version="1" fragment="single">MECCYPVPQRYKANGDCDEGQLGEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VJH5</accession>
    <name>A0A392VJH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011157995">
        <property type="protein sequence ID" value="MCI87121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VJH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3874" checksum="4987C19C3546ADBD" modified="2018-12-05" version="1" fragment="single">VTTRKRTANAEVGGSSKKSKKEDTIHLPSDDEMVGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPS6</accession>
    <name>A0A392VPS6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011218914">
        <property type="protein sequence ID" value="MCI89419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPS6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="7762" checksum="18BEF8A42A15A908" modified="2018-12-05" version="1" fragment="single">QVGMPPRRGPRIPSREAVSNEASSQPRVEAPRNRGRVRRRGQARRGRAGVMPEVEVPRARRGNPTLAELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQ82</accession>
    <name>A0A392VQ82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011247983">
        <property type="protein sequence ID" value="MCI90558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQ82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3329" checksum="98880DF8D2889765" modified="2018-12-05" version="1" fragment="single">GYVPSMPLLWDKCVICCSAAPPMVTLKEYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VU91</accession>
    <name>A0A392VU91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011282966">
        <property type="protein sequence ID" value="MCI91816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VU91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5897" checksum="3ABF723CE5924688" modified="2018-12-05" version="1" fragment="single">MAQNDYRATNDRGAKKKGGVLELDTQTALLAQQKLMTSQMEAMMKLLSNPQVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0K7</accession>
    <name>A0A392W0K7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011309864">
        <property type="protein sequence ID" value="MCI92771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0K7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6027" checksum="A02550659519E38A" modified="2018-12-05" version="1" fragment="single">VIGNTESRTKRKHEKKAKEDGSETDSDDGKTLAEKFKKKVEAEASKANQKHPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4Q2</accession>
    <name>A0A392W4Q2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011364936">
        <property type="protein sequence ID" value="MCI94729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4Q2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3352" checksum="F20539A1D3F864F1" modified="2018-12-05" version="1" fragment="single">AEEKISQQEGLKVKVRFTAREEEEEEMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5T0</accession>
    <name>A0A392W5T0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011374859">
        <property type="protein sequence ID" value="MCI95062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5T0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2931" checksum="6BF3C7B91BD9BE8A" modified="2018-12-05" version="1" fragment="single">MEAPNLNFGSLRRSTEQWHTLMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W8U2</accession>
    <name>A0A392W8U2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011407371">
        <property type="protein sequence ID" value="MCI96162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W8U2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3136" checksum="7795E1A9EDE96A4B" modified="2018-12-05" version="1" fragment="single">MIVGSKRFFKRTNLATPGAEEGAVNLVGAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N1R0</accession>
    <name>A0A392N1R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative non-LTR retroelement reverse transcriptase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010025489">
        <property type="protein sequence ID" value="MCH93661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF78">
        <property type="entry name" value="OS12G0587133 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH93661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="312" mass="36153" checksum="807EB603C8F4426D" modified="2018-12-05" version="1" fragment="single">MASTWEPLINSLRKRLGGWGNKFVSLGGRIVLLNSVLNSIPIYFLSYLKIPLHVWKKVRRIQREFLWGGLRGRKRINWVKWDVVCRPKSCGGLGVRDIRVVNISLLTKWRWRLLSNDSCMWKEVIKGKYGDSVIGRVEMGEDCKPWFSSTWWRDICSIGTNLETNWFLDEVVKKMGNGVQTSFWKDKWIGDVSFHDKFPRLFSISTQKEDSVAALCNQDGEVRXXXXXRRRLFVWESNQLDELLTIINPIILSDMEDHWGWKAEKGGLFSVKSTYELLVKQFLVGTSLTREETTAFRAIWNCPAPSKIAGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMX1</accession>
    <name>A0A392NMX1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Enhancer of polycomb-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the enhancer of polycomb family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010043309">
        <property type="protein sequence ID" value="MCI00469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035267">
        <property type="term" value="C:NuA4 histone acetyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006357">
        <property type="term" value="P:regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024943">
        <property type="entry name" value="Enhancer_polycomb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019542">
        <property type="entry name" value="Enhancer_polycomb-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14898">
        <property type="entry name" value="ENHANCER OF POLYCOMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10513">
        <property type="entry name" value="EPL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Enhancer of polycomb-like N-terminal" evidence="7">
        <location>
            <begin position="9"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF10513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI00469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12661" checksum="BAA40CFC295127C4" modified="2018-12-05" version="1" fragment="single">YERDYSCTFAQPTSYLRARGARAEIGEFVEYDLDNEDEDWLSEFNEERMILTPELFESLLFKLEVLDHKARERAGLLTAPLGSPIPVLLRFETAIEVKLFLGSLCVKNLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUF1</accession>
    <name>A0A392NUF1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="14 15">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">cv. 10/8</strain>
            <tissue evidence="14">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010050259">
        <property type="protein sequence ID" value="MCI02809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052232">
        <property type="entry name" value="RLK_Ser/Thr-Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001245">
        <property type="entry name" value="Ser-Thr/Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984">
        <property type="entry name" value="OS01G0323000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47984:SF8">
        <property type="entry name" value="RECEPTOR-LIKE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07714">
        <property type="entry name" value="PK_Tyr_Ser-Thr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="14">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="MCI02809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7685" checksum="784591260B476E7D" modified="2018-12-05" version="1" fragment="single">GQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVENGNLEQWLHGNVGPVSPLTWDIRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXM8</accession>
    <name>A0A392NXM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein STICHEL-like 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010054649">
        <property type="protein sequence ID" value="MCI04212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11632" checksum="EE7D71C04A722DC6" modified="2018-12-05" version="1" fragment="single">MMKNKTLSSSADCGSRVRPSKSYNRMDVVTTLRNCEGNLLSSRERFLNRSLQENMGASCSRVDSYNEEGHIGAHLVPSIINSDNQSNCFPQTLWLQKKFRSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYY7</accession>
    <name>A0A392NYY7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">beta-aspartyl-peptidase</fullName>
            <ecNumber evidence="3">3.4.19.5</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Cleavage of a beta-linked Asp residue from the N-terminus of a polypeptide.</text>
            <dbReference type="EC" id="3.4.19.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.5" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010057308">
        <property type="protein sequence ID" value="MCI05023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008798">
        <property type="term" value="F:beta-aspartyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.30:FF:000001">
        <property type="entry name" value="Isoaspartyl peptidase/L-asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.30">
        <property type="entry name" value="(Glycosyl)asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188">
        <property type="entry name" value="L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188:SF6">
        <property type="entry name" value="N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="85"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="107"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="9">
        <location>
            <begin position="56"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI05023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="136" mass="14128" checksum="C05C983C2F46A2D8" modified="2018-12-05" version="1" fragment="single">GVETVDSSHFITPENIERLNQAKDANRVQIDYTQPIQNDTKNETETPLANGDSQIGTVGCVAVDSNGNLASATSTGGLVNKMVGRIGDTPVIGAGTYANEFCAVSATGKGEAIIRGTVARDVAALMEFKGLSLKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4B9</accession>
    <name>A0A392P4B9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">1-aminocyclopropane-1-carboxylate oxidase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062353">
        <property type="protein sequence ID" value="MCI06594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4B9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209:SF859">
        <property type="entry name" value="OS03G0690500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10209">
        <property type="entry name" value="OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="5">
        <location>
            <begin position="5"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI06594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8051" checksum="B5B4233B8CD775D9" modified="2018-12-05" version="1" fragment="single">MDCHKGNALLCHYYPPCPEPELTMGAAGHCDPSFLTVLLQDHIGGLQILHQDKWIDVPPIPEAFVVNIGDVMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCY2</accession>
    <name>A0A392PCY2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding bromodomain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010070017">
        <property type="protein sequence ID" value="MCI08715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCY2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.920.10">
        <property type="entry name" value="Bromodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036427">
        <property type="entry name" value="Bromodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051831">
        <property type="entry name" value="Bromodomain_contain_prot"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22881">
        <property type="entry name" value="BROMODOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22881:SF11">
        <property type="entry name" value="BROMODOMAIN-CONTAINING PROTEIN DDB_G0270170-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47370">
        <property type="entry name" value="Bromodomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0103">Bromodomain</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="32"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="32"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="42"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18353" checksum="24A7D6C72B18E581" modified="2018-12-05" version="1" fragment="single">NDVFLVCSNAMQYNSPDTIYHRQARAMQEIARKDFENLRQDSEDDDDDDNDSEPPPPPKIVQRGRPPGKHTKKSLGMSPIEHAAPESSSDATLASGGDIASGSNGYNLRKVVSKFQPSDSSTRALQYNSGGYTNWTSEWENEFPGQNLCLCLSSVCPILLLFTGTIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PD89</accession>
    <name>A0A392PD89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serpin-ZX</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the serpin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072658">
        <property type="protein sequence ID" value="MCI09439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PD89"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.497.10">
        <property type="entry name" value="Antithrombin, subunit I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042178">
        <property type="entry name" value="Serpin_sf_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF211">
        <property type="entry name" value="GH10112P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="SERINE PROTEASE INHIBITOR, SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serpin" evidence="2">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI09439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="176" mass="19848" checksum="9D883CDFCF37A9E9" modified="2018-12-05" version="1" fragment="single">MIAAGSDGPTRQQLLDFLRFKSTDHLNSFVSHLLSIILKNVTPSHRPFLPFLEAAPPTTPVCLSFANGVWVEQSLTLQPSFKQIVATEYKATLASVDFQNKADEVTNEVNLWVEKETNGLIKEILPQGSVHNLTRLIFANALYFKGVWDYPFFARETKDYDFHLLNGSSVKVPFMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PDN1</accession>
    <name>A0A392PDN1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">WD repeat-containing protein 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the WD repeat HIR1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072587">
        <property type="protein sequence ID" value="MCI09426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048188">
        <property type="term" value="C:Set1C/COMPASS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042393">
        <property type="term" value="F:histone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006325">
        <property type="term" value="P:chromatin organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00200">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055410">
        <property type="entry name" value="Beta-prop_CAF1B_HIR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001632">
        <property type="entry name" value="WD40_G-protein_beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22847:SF684">
        <property type="entry name" value="COMPASS-LIKE H3K4 HISTONE METHYLASE COMPONENT WDR5B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22847">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24105">
        <property type="entry name" value="Beta-prop_CAF1B_HIR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00319">
        <property type="entry name" value="GPROTEINB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0156">Chromatin regulator</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7" id="KW-0853">WD repeat</keyword>
    <feature type="domain" description="CAF1B/HIR1 beta-propeller" evidence="8">
        <location>
            <begin position="21"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="23"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="65"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="107"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="7">
        <location>
            <begin position="149"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF24105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI09426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="195" mass="21226" checksum="298DE5E2302F42C9" modified="2018-12-05" version="1" fragment="single">MATSTTSSNGNQPFKPYRHLKTLTAHTRAVSSVKFSNDGKLLASGSLDKTLIIWSSTTLSLLHRLTGHSEGISDIAWSSDSHYICSASDDRTLRIWDANGGDCVKTLRGHTHVVFCVNFDPQSNFIVSGSFDENVRVWEVKTGKCIHAIKAHTMPVTXXXXXXXGSLIVSGSHDGSCKIWDTNSGALLKTLIDDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHC5</accession>
    <name>A0A392PHC5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chalcone-flavonone isomerase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the chalcone isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080369">
        <property type="protein sequence ID" value="MCI11493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016872">
        <property type="term" value="F:intramolecular lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016087">
        <property type="entry name" value="Chalcone_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016088">
        <property type="entry name" value="Chalcone_isomerase_3-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036298">
        <property type="entry name" value="Chalcone_isomerase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044191">
        <property type="entry name" value="CHI3-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47588:SF1">
        <property type="entry name" value="CHALCONE--FLAVANONE ISOMERASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47588">
        <property type="entry name" value="CHALCONE--FLAVONONE ISOMERASE 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02431">
        <property type="entry name" value="Chalcone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54626">
        <property type="entry name" value="Chalcone isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chalcone isomerase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI11493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8907" checksum="C5CEE19244FE2EB0" modified="2018-12-05" version="1" fragment="single">PVEKVIRLVVIKEIKGAQYGLQVETAVRDRLAADDKYEDEEEEALEKVVEFFRSKYFKKNSVITYHFPANSPTAEVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUY7</accession>
    <name>A0A392PUY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nuclear transcription factor Y subunit B-2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098523">
        <property type="protein sequence ID" value="MCI15901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016602">
        <property type="term" value="C:CCAAT-binding factor complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001228">
        <property type="term" value="F:DNA-binding transcription activator activity, RNA polymerase II-specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046982">
        <property type="term" value="F:protein heterodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000978">
        <property type="term" value="F:RNA polymerase II cis-regulatory region sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.20.10">
        <property type="entry name" value="Histone, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009072">
        <property type="entry name" value="Histone-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027113">
        <property type="entry name" value="Transc_fact_NFYB/HAP3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11064">
        <property type="entry name" value="CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11064:SF187">
        <property type="entry name" value="NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47113">
        <property type="entry name" value="Histone-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="102" mass="11169" checksum="31FDE97AB3618242" modified="2018-12-05" version="1" fragment="single">GDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDVAPSSSSSSVFDYGAPQVGMIMHHQQQHQHQGHVYGSGGFHQVPGGPGYPNAGSNAGRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVJ4</accession>
    <name>A0A392PVJ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lysine-specific demethylase JMJ14-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099529">
        <property type="protein sequence ID" value="MCI16123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVJ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140993">
        <property type="term" value="F:histone modifying activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051726">
        <property type="term" value="P:regulation of cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048731">
        <property type="term" value="P:system development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003889">
        <property type="entry name" value="FYrich_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003888">
        <property type="entry name" value="FYrich_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040092">
        <property type="entry name" value="TBRG1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22715">
        <property type="entry name" value="TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22715:SF0">
        <property type="entry name" value="TRANSFORMING GROWTH FACTOR BETA REGULATOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05965">
        <property type="entry name" value="FYRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05964">
        <property type="entry name" value="FYRN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00541">
        <property type="entry name" value="FYRN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51543">
        <property type="entry name" value="FYRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51542">
        <property type="entry name" value="FYRN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI16123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15122" checksum="A7A2C3F49C5D877D" modified="2018-12-05" version="1" fragment="single">MQNFSISVELVSLGSVMCGNHWCSKHAIYPKGFKSRVKFFSILDPANTCYYVSEVIDGGFLGPFFRVTLEEHPKEVFTKTTADKCWETVIDRLNCEINRRRSLGELNMPRLELLQNINGHKMFGFLSPSIIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZJ2</accession>
    <name>A0A392PZJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010103319">
        <property type="protein sequence ID" value="MCI16979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017263825" evidence="2">
        <location>
            <begin position="22"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI16979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9815" checksum="E58373B5E6C6F191" modified="2018-12-05" version="1">MVWCLCVRIWVFLVGSCSVEGFGEVHCLVTVFRFSVAVEFVLFSSLFGVRGILVLAVFVHSLLSQVVVVVPYGDGGASLLRRRIGVLLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1E5</accession>
    <name>A0A392Q1E5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Damaged DNA-binding protein 1A</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107642">
        <property type="protein sequence ID" value="MCI17924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1E5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058543">
        <property type="entry name" value="Beta-prop_RSE1/DDB1/CPSF1_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050358">
        <property type="entry name" value="RSE1/DDB1/CFT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10644">
        <property type="entry name" value="DNA REPAIR/RNA PROCESSING CPSF FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23726">
        <property type="entry name" value="Beta-prop_RSE1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RSE1/DDB1/CPSF1 second beta-propeller" evidence="1">
        <location>
            <begin position="3"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="177" mass="19895" checksum="47C422B4613D111A" modified="2018-12-05" version="1" fragment="single">MSYLLCALGDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFAICSLKYNPASAEESENHFVRLLDDQTFDFISVYPLDTYEYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q1G4</accession>
    <name>A0A392Q1G4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein argonaute 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010107726">
        <property type="protein sequence ID" value="MCI17944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q1G4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003165">
        <property type="entry name" value="Piwi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22891">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02171">
        <property type="entry name" value="Piwi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50822">
        <property type="entry name" value="PIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Piwi" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="95" mass="10890" checksum="16F7572057BA4FC3" modified="2018-12-05" version="1" fragment="single">ACKHFDESWCPKFTLIVAQKNHHTRFFKPHAPQENVSPGTVIDNNICHPKNNDFYLCAHAGKIGTTRPTHYHVLYDDIGFSPDNLQELVHSLCYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4Q0</accession>
    <name>A0A392Q4Q0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell division control protein 48 C-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111434">
        <property type="protein sequence ID" value="MCI18700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4Q0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055278">
        <property type="entry name" value="CDC48c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48470:SF1">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 48 C ISOFORM 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4805" checksum="27B671E04DB0A122" modified="2018-12-05" version="1" fragment="single">VDALTTKHVNQGGTWVIERVLKQLLVELDGAEQRKGVFVIGATN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QG26</accession>
    <name>A0A392QG26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132614">
        <property type="protein sequence ID" value="MCI22832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QG26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4651" checksum="C2092B3B2F3BD1E6" modified="2018-12-05" version="1" fragment="single">MMEDGHEPKLPLLMRATVVSWWENSDSISETVMKDEEESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QIK5</accession>
    <name>A0A392QIK5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010137531">
        <property type="protein sequence ID" value="MCI23724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QIK5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="24"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4063" checksum="5448F72544DE6034" modified="2018-12-05" version="1">MEPPPEPRVTGAGETISKNHFSNSSKLPPTPTSSTIPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QLA4</accession>
    <name>A0A392QLA4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein putative Ty1-copia subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010145732">
        <property type="protein sequence ID" value="MCI25181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057670">
        <property type="entry name" value="SH3_retrovirus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25597">
        <property type="entry name" value="SH3_retrovirus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retroviral polymerase SH3-like" evidence="1">
        <location>
            <begin position="42"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF25597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="184" mass="21522" checksum="B904797901E7D3E7" modified="2018-12-05" version="1" fragment="single">ILERVRCMLTSAGLKKVFWAETPKEVWSGHPLDLEKLRVFGCVAYALIRQDNVEPRALRCMFIRYPEGVKAYKLWYLEPGHKRCITSRDVVXXXXXXXFKKTDDIGRSTEISKEELEHEEILVEVEHVDAELRIPDQVEEEAQDAEDTEEVKETVDDYLLTRDRPRRVIKPHQRLGYTDLIAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QMI6</accession>
    <name>A0A392QMI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GRAS family transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010141790">
        <property type="protein sequence ID" value="MCI24495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QMI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34482">
        <property type="entry name" value="DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34482:SF36">
        <property type="entry name" value="RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="2"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI24495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15429" checksum="F857FE8BB70D0D83" modified="2018-12-05" version="1" fragment="single">ERFKREFLMKYFPADVRNKKVVEFMELKQGNISVAEYAAKFESLGVFSPHYNTAEAEYDKCVKFESGLRPDIKHLIGFSEIRDFPTLVNKSRIYDKDGRAKSNYYKAVNDKKRKGQDRGKPYGDKNKKSGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQE4</accession>
    <name>A0A392QQE4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Tubulin beta-2 chain</fullName>
        </submittedName>
    </protein>
    <organism evidence="12 13">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">cv. 10/8</strain>
            <tissue evidence="12">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the tubulin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153468">
        <property type="protein sequence ID" value="MCI26468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQE4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005200">
        <property type="term" value="F:structural constituent of cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007017">
        <property type="term" value="P:microtubule-based process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.600:FF:000002">
        <property type="entry name" value="Tubulin beta chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.600">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="entry name" value="Tubulin/FtsZ, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002453">
        <property type="entry name" value="Beta_tubulin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023123">
        <property type="entry name" value="Tubulin_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36527">
        <property type="entry name" value="OS01G0282866 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36527:SF5">
        <property type="entry name" value="TUBULIN_FTSZ GTPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03953">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01163">
        <property type="entry name" value="BETATUBULIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="Tubulin C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0493">Microtubule</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tubulin/FtsZ 2-layer sandwich" evidence="11">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="101"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="10">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="MCI26468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="15078" checksum="8AA8041DCCDF737A" modified="2018-12-05" version="1">MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGYDYEDEEEVQEEEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QT07</accession>
    <name>A0A392QT07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chaperone protein ClpC chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010156778">
        <property type="protein sequence ID" value="MCI27002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QT07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000017">
        <property type="entry name" value="ATP-dependent chaperone ClpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050130">
        <property type="entry name" value="ClpA_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638:SF155">
        <property type="entry name" value="CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp ATPase C-terminal" evidence="4">
        <location>
            <begin position="62"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI27002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="169" mass="19404" checksum="BE703E8C7232B8B1" modified="2018-12-05" version="1">MTSNVGSSVIEKGGRRIGFDLDYDEKDGSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGTSGAQESLPEALPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QT44</accession>
    <name>A0A392QT44_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Condensin complex subunit 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010160039">
        <property type="protein sequence ID" value="MCI27551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9042" checksum="6DD83DDDC85FD316" modified="2018-12-05" version="1" fragment="single">MRSMWPGIFGNSGGSPFXXXXXXXXXVQASRFMLQMVQIPLFVKETEAACENSSTEQPQVIDSCAEVPFECGEEGLALLIAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QYK2</accession>
    <name>A0A392QYK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Peptide transporter PTR1</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010169350">
        <property type="protein sequence ID" value="MCI28964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QYK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006857">
        <property type="term" value="P:oligopeptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000109">
        <property type="entry name" value="POT_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018456">
        <property type="entry name" value="PTR2_symporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11654">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00854">
        <property type="entry name" value="PTR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01023">
        <property type="entry name" value="PTR2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI28964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="129" mass="14531" checksum="DF55AD686E490E52" modified="2018-12-05" version="1" fragment="single">ADQFDETDEKERKKKSSFFNWFYFSINIGALIASSVLVWIQMNVGWEWGFGVPAVAMVLALIFFFGGSPLYRLQIPGGSPLTRICQVLVAACRKLKLQVPADKSLLHETIDVESVIKGSRKLDHTNNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZ86</accession>
    <name>A0A392QZ86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010174073">
        <property type="protein sequence ID" value="MCI29663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZ86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="85"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11173" checksum="9452D3EFD7C43640" modified="2018-12-05" version="1" fragment="single">MEIGKDPENDLKPSKRSKIEKDVGKLRKDMLKLFEGLSNQTDLLLYLMFESQIMRDWIITHLCPALKIVPPPVNPAPNAYDFPKPDNSTSSDDSTPTVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZJ9</accession>
    <name>A0A392QZJ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010172366">
        <property type="protein sequence ID" value="MCI29409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZJ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8470" checksum="12C80031D1B8394E" modified="2018-12-05" version="1" fragment="single">MKMLHDLQINIPFAEVLEQMPVYAKFMKELMTKKRKPLDDDTVEMTEECSAIIQKKLPQKKKDPGSFTIPCSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R492</accession>
    <name>A0A392R492_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA 5'-3' helicase</fullName>
            <ecNumber evidence="8">5.6.2.3</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Endomembrane system</location>
            <topology evidence="7">Peripheral membrane protein</topology>
            <orientation evidence="7">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.3" evidence="8"/>
    <dbReference type="EMBL" id="LXQA010181227">
        <property type="protein sequence ID" value="MCI30656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R492"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015629">
        <property type="term" value="C:actin cytoskeleton"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010643">
        <property type="entry name" value="HBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001945">
        <property type="entry name" value="RAD3/XPD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000633">
        <property type="entry name" value="Vinculin_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06777">
        <property type="entry name" value="HBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00852">
        <property type="entry name" value="XRODRMPGMNTD"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00664">
        <property type="entry name" value="VINCULIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0347">Helicase</keyword>
    <keyword evidence="11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helical and beta-bridge" evidence="10">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00044969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF06777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI30656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5518" checksum="E6893D7EAB6B03A2" modified="2018-12-05" version="1" fragment="single">RFKATDASRLRAEYNRLVEGLALRGDLPAADGWLANPALPDDILKEAVPGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5C8</accession>
    <name>A0A392R5C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186175">
        <property type="protein sequence ID" value="MCI31304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015300">
        <property type="entry name" value="DNA-bd_pseudobarrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101936">
        <property type="entry name" value="DNA-binding pseudobarrel domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI31304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="9140" checksum="075569C1A1944A4A" modified="2018-12-05" version="1" fragment="single">MVTDGDAMVTDIVDGDETLLWSSRYISDRAVELLSRITRPKTKIMIPNGDILEWTVRTMNGRLCFGAGWFKYVTKNRLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R5M0</accession>
    <name>A0A392R5M0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phospholipase D epsilon-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010191069">
        <property type="protein sequence ID" value="MCI31908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R5M0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004630">
        <property type="term" value="F:phospholipase D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024632">
        <property type="entry name" value="PLipase_D_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015679">
        <property type="entry name" value="PLipase_D_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18896:SF137">
        <property type="entry name" value="PHOSPHOLIPASE D ALPHA 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12357">
        <property type="entry name" value="PLD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Phospholipase D C-terminal" evidence="3">
        <location>
            <begin position="45"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI31908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14483" checksum="D30BF48F2BF71324" modified="2018-12-05" version="1">MDGQRDTEIAIGGYQTQDGVDHCMSKGDIHAYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMRVTQDGSVKDLTNGEDHFPDTKSLVKGTRSKLLPSIMTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R8B7</accession>
    <name>A0A392R8B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010196136">
        <property type="protein sequence ID" value="MCI32499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R8B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="9141" checksum="B42A95652FFE926B" modified="2018-12-05" version="1" fragment="single">MIPDLSDKLDTLTIKEENKALWVRRWGKNRKVAVRSKFGVNKEPLKKPSRENLKIRFKKIIDKDKRSEKMDQYPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RD36</accession>
    <name>A0A392RD36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Rop guanine nucleotide exchange factor 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010210543">
        <property type="protein sequence ID" value="MCI34107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RD36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005085">
        <property type="term" value="F:guanyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2010">
        <property type="entry name" value="PRONE domain, subdomain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005512">
        <property type="entry name" value="PRONE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038937">
        <property type="entry name" value="RopGEF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33101">
        <property type="entry name" value="ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33101:SF47">
        <property type="entry name" value="ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03759">
        <property type="entry name" value="PRONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51334">
        <property type="entry name" value="PRONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0344">Guanine-nucleotide releasing factor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PRONE" evidence="4">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI34107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="92" mass="10333" checksum="79206C60C773B000" modified="2018-12-05" version="1" fragment="single">MLIEIFDSFQDTEFWYAEQGSISGNSNRSSHSSAGSHSKAGSFRIIAQRKDEKWWLPVPCVHSGGLSDKSRKHLIEKRDCANQIHKAAMAIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392REK2</accession>
    <name>A0A392REK2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010213776">
        <property type="protein sequence ID" value="MCI34454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392REK2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="2945" checksum="FA639AB3047F047D" modified="2018-12-05" version="1" fragment="single">GKHACVNLIEVSPLVGLGSEILLWDGQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFM9</accession>
    <name>A0A392RFM9_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010223212">
        <property type="protein sequence ID" value="MCI35423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="120" mass="13841" checksum="8CF8C6BFA435F786" modified="2018-12-05" version="1" fragment="single">GVKFPKQTPYKPGQDKSRYCIYHKSYGHLTDDCIQLKDAIEILIRNGQLREFVRRKDNPRTEAAETSTVEEEHPPSTGQTHSKPVAMCVSRPEDFFIPDHLGDYYIAPTLSKWENFPEAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RL14</accession>
    <name>A0A392RL14_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010231646">
        <property type="protein sequence ID" value="MCI36216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RL14"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="133" mass="15195" checksum="50DC1AD2BD3B2299" modified="2018-12-05" version="1" fragment="single">KALRAIIFCLGDKVLREVAKETSVVAMWTKLDSLYMTKSLAHKQCLKQQLYFYCMVDNKPVVEQLAEFNKIIDDLANIDVNLEDEDKSLENFKDALLYGKEGTITLDKVQSALRTKELSKFRDLKIENDSGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RNX1</accession>
    <name>A0A392RNX1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Type I inositol 145-trisphosphate 5-phosphatase 11-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010254677">
        <property type="protein sequence ID" value="MCI38341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RNX1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3886" checksum="253F7A6FBE1657BA" modified="2018-12-05" version="1" fragment="single">MVGSNRDFDLLVVGLQEAPRKKVASMLSAALDESHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPU0</accession>
    <name>A0A392RPU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010248348">
        <property type="protein sequence ID" value="MCI37790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI37790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8270" checksum="13345D1CC62E1F83" modified="2018-12-05" version="1">MIAWSIKSMITAAESYIGHPFVITTLCDRLQVPTEDDDQITVPMDPIGRVFFRIAQRDLEAAQAAAAAPHPPPPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQ65</accession>
    <name>A0A392RQ65_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010253467">
        <property type="protein sequence ID" value="MCI38234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQ65"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023780">
        <property type="entry name" value="Chromo_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00385">
        <property type="entry name" value="Chromo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="Chromo" evidence="2">
        <location>
            <begin position="52"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="115"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI38234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="14057" checksum="FFF47D3E35297AFF" modified="2018-12-05" version="1" fragment="single">KVAYELDLPAASRVHPVFHVSLLKLCVGEPTTQVTPIEDPSNDPPIIPMPVAITNRRLAADGKEEFLIEWKDLPLSEATWMDKNAFQKQFPNLNLEDKILFDDSGNDTQQNRGLNSNNSNNENDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSZ4</accession>
    <name>A0A392RSZ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">COBRA-like protein 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010271401">
        <property type="protein sequence ID" value="MCI39761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSZ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31052">
        <property type="entry name" value="COBRA-LIKE PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31052:SF3">
        <property type="entry name" value="COBRA-LIKE PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="8923" checksum="374D4EB809A75A50" modified="2018-12-05" version="1">MVSASNAILADGTNIPGAVGNGTIFAGSSVIDLKTAAATAGDLTQMQVQVEIVGTTLGVAPPSVPMPSTINLANDGFICGEPASQGSYAVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTN3</accession>
    <name>A0A392RTN3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010268196">
        <property type="protein sequence ID" value="MCI39507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="2"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI39507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="14133" checksum="893C89208E4D6288" modified="2018-12-05" version="1" fragment="single">CRLFTTHFTASRHQPKTEAALEAIVQREVEPLRTYLERFNKAAVEVKTDDRMKLYLLDRGLRRGSDFAKAVGIEEIKTLDAFFEKAQKYIAYEEKQVAAEVRRQKSQDEAGPSRRGGDKRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU90</accession>
    <name>A0A392RU90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010276825">
        <property type="protein sequence ID" value="MCI40173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6570" checksum="5A259D357040760C" modified="2018-12-05" version="1" fragment="single">HNTSRPANPGESWRKNSRKFLAQGSFSEILAIRRPARLGELLAQAQERRPAKTTQNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYQ8</accession>
    <name>A0A392RYQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295961">
        <property type="protein sequence ID" value="MCI41761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5240" checksum="C8AB26F17C70028D" modified="2018-12-05" version="1" fragment="single">YGETIPSAPTSSATNIGVVYQGASSNSVPIVAAQNYQHYPFNEMNGYDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZA6</accession>
    <name>A0A392RZA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010292062">
        <property type="protein sequence ID" value="MCI41414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8430" checksum="FBD892949FEF6CD6" modified="2018-12-05" version="1" fragment="single">MARMMIDIDDGVMKVRVQDEEKQVMKPSPLEQALTNALNDIDSDEEQVIKECLNELDALKEVSPLEAKLEELKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5S7</accession>
    <name>A0A392S5S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010316123">
        <property type="protein sequence ID" value="MCI43350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5497" checksum="5184D8D70BDBA4C6" modified="2018-12-05" version="1" fragment="single">MSPIVSRRWRVPPRGASPRRVSCAPILAMWGVSRCTLVSPRALMPLVPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S7B2</accession>
    <name>A0A392S7B2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010329170">
        <property type="protein sequence ID" value="MCI44332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="15" mass="1554" checksum="D633C72BC85535FB" modified="2018-12-05" version="1" fragment="single">MKSLDDAVAVVHLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8N0</accession>
    <name>A0A392S8N0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340821">
        <property type="protein sequence ID" value="MCI45208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8N0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4886" checksum="A9C55088C8302C88" modified="2018-12-05" version="1" fragment="single">MPSSSIWCTLSVFLVELERVSFESGFSIDPPKVPLLLPALPLGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8T6</accession>
    <name>A0A392S8T6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010341491">
        <property type="protein sequence ID" value="MCI45258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8T6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="66"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="8799" checksum="061F611F3AA4F38A" modified="2018-12-05" version="1" fragment="single">MQMMRMAKDVEEEMREDDDDGDRVLGKKKMGHSEGSGLGSNGSKFRTGFNPIQKETNRSGNLSWANSSKKVGSSGSNTSPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S923</accession>
    <name>A0A392S923_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010343526">
        <property type="protein sequence ID" value="MCI45381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S923"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2735" checksum="0EF0E3C8DA5F5378" modified="2018-12-05" version="1">MPYEKFYSLISSVDAKAANATIEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SA68</accession>
    <name>A0A392SA68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010342353">
        <property type="protein sequence ID" value="MCI45307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SA68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="10462" checksum="87ADB0B2256CE3C1" modified="2018-12-05" version="1" fragment="single">MRQRRWMEYLKDFDFDLKYHPGKANVVADALSRKALYVSELMMHKCNLIENFRNLNLNMVDVGNGLVMNKLEISCDLRDIIVQAQMNDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAC9</accession>
    <name>A0A392SAC9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010346539">
        <property type="protein sequence ID" value="MCI45629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAC9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2727" checksum="4EF467BFDA918586" modified="2018-12-05" version="1" fragment="single">VELVMGLSWAGAHDEVELGLLKWSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHT1</accession>
    <name>A0A392SHT1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010382906">
        <property type="protein sequence ID" value="MCI48199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHT1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5876" checksum="F77186FDA501B53F" modified="2018-12-05" version="1">MEFGRGEGKISSLSLDSGLESLSDVLLAKRGQEFLVLTERGNPSLNELVARARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRT8</accession>
    <name>A0A392SRT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010427550">
        <property type="protein sequence ID" value="MCI51142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11730" checksum="238A6BD724A1AFDB" modified="2018-12-05" version="1" fragment="single">QLRLRFELPRYFDFNELSVFKFGQEFVIGDIPSGYSHDSYPLSRDKQPRLRFQLPHHFDFNELSLFKLGHEFVIGDFPSVYPNESNSTENSHFMKKVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SU22</accession>
    <name>A0A392SU22_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430602">
        <property type="protein sequence ID" value="MCI51366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SU22"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6641" checksum="127D3F63550659BD" modified="2018-12-05" version="1" fragment="single">MELLPKKFEKVCHSTRRHMRHFSLCAVLAHGGIETHAMSVRMAEMGVSPCTREGGKGSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUK6</accession>
    <name>A0A392SUK6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010442403">
        <property type="protein sequence ID" value="MCI52117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUK6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4347" checksum="A9E5397E115A7C54" modified="2018-12-05" version="1" fragment="single">TSDKATPETADESVKEKIVTSVDVAQDVEASKDLTNPNDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZ47</accession>
    <name>A0A392SZ47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010474560">
        <property type="protein sequence ID" value="MCI54118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZ47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9834" checksum="E2F1ADB51A1BF914" modified="2018-12-05" version="1" fragment="single">HRSTLCEIVATSKMRSNRHRVRAFTRMNIEKRIGVVRWNWSRNGGDARRHGEISKKLQKNEGINGELSKKLKEEDEDCSGKRLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4C8</accession>
    <name>A0A392T4C8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010492859">
        <property type="protein sequence ID" value="MCI55237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="91" mass="10663" checksum="591BA33EF8EF79BB" modified="2018-12-05" version="1" fragment="single">YKTHLGATPYQLVYGKACHLPVELAHKAFWATRHLNLDEQAAGQERLDKLNELDELRLQAYDNAAIYKEKTRRFHDKNLKRKEFEPGQQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T577</accession>
    <name>A0A392T577_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">glucan endo-1,3-beta-D-glucosidase</fullName>
            <ecNumber evidence="3">3.2.1.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">(1-&gt;3)-beta-glucan endohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Beta-1,3-endoglucanase</fullName>
        </alternativeName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of (1-&gt;3)-beta-D-glucosidic linkages in (1-&gt;3)-beta-D-glucans.</text>
            <dbReference type="EC" id="3.2.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glycosyl hydrolase 17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.39" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010493988">
        <property type="protein sequence ID" value="MCI55300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T577"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042973">
        <property type="term" value="F:glucan endo-1,3-beta-D-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000490">
        <property type="entry name" value="Glyco_hydro_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044965">
        <property type="entry name" value="Glyco_hydro_17_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32227">
        <property type="entry name" value="GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00332">
        <property type="entry name" value="Glyco_hydro_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI55300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7843" checksum="F1BF392702AE56B2" modified="2018-12-05" version="1" fragment="single">AFVGVNIGTDVTDLPSASNIVVTLKSHQITHVRLYDANAHMLQALSNTGIEVLVGVTDEEILRIGESPSVAASW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T724</accession>
    <name>A0A392T724_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010520219">
        <property type="protein sequence ID" value="MCI56903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T724"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516:SF11">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5180" checksum="62FACAC50B97EA4C" modified="2018-12-05" version="1" fragment="single">HKGNQCVDSLAKLGASSDVDLVIKNSPPICMLDLLKNNTIRIVFIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDC8</accession>
    <name>A0A392TDC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010537878">
        <property type="protein sequence ID" value="MCI57945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7525" checksum="1CFC85411EB862FF" modified="2018-12-05" version="1" fragment="single">MCCREVARSVKAQKDVFVMFASLRVEEKTEVDALPVVREFVDVFPNDILDLPPEREVEFSIDIVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TEQ2</accession>
    <name>A0A392TEQ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein ARABIDILLO 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010545840">
        <property type="protein sequence ID" value="MCI58415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TEQ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000225">
        <property type="entry name" value="Armadillo"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46976">
        <property type="entry name" value="PROTEIN ARABIDILLO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46976:SF1">
        <property type="entry name" value="PROTEIN ARABIDILLO 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00514">
        <property type="entry name" value="Arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50176">
        <property type="entry name" value="ARM_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="ARM" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI58415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6017" checksum="A801AE63E18FA69D" modified="2018-12-05" version="1" fragment="single">DVHETAAGALWSLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFR0</accession>
    <name>A0A392TFR0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010551129">
        <property type="protein sequence ID" value="MCI58755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFR0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5282" checksum="B54F6EDB7B1B226D" modified="2018-12-05" version="1" fragment="single">SGNGLNMYLNPRIHGSTPTEGKNSTRDGGGEDRKVAVSGPPKMRPWAVTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG31</accession>
    <name>A0A392TG31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010571550">
        <property type="protein sequence ID" value="MCI59882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041373">
        <property type="entry name" value="RT_RNaseH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17917">
        <property type="entry name" value="RT_RNaseH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase RNase H-like" evidence="7">
        <location>
            <begin position="2"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI59882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7292" checksum="3EE2A5EF21B3DF7C" modified="2018-12-05" version="1" fragment="single">MGLGGVLMQKGQVVAYASRQLKIHERNYPTHDLELAAVVFTLKVWRHYLYGSRFEVFSDHKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THE5</accession>
    <name>A0A392THE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010566869">
        <property type="protein sequence ID" value="MCI59610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5506" checksum="772C877ABEDD0BCA" modified="2018-12-05" version="1" fragment="single">MNLRSNISSPFSSNTGTPAFVSQWAGLNFFTKALRLSKPTKSSTDILSSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNY9</accession>
    <name>A0A392TNY9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010617460">
        <property type="protein sequence ID" value="MCI62354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNY9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3035" checksum="96C47987FE31C138" modified="2018-12-05" version="1" fragment="single">MDSQTVEGAAANLVDLESVNVEGDDETPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRB5</accession>
    <name>A0A392TRB5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010642353">
        <property type="protein sequence ID" value="MCI63721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8114" checksum="D5310596664F3776" modified="2018-12-05" version="1" fragment="single">MLVNKSRICDKDSKAKASYYKAVNERKWKDFGRGKPYDKRGKKPDEGGSSGGRGGGAKDCPICGVSGHRFFECP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSP3</accession>
    <name>A0A392TSP3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UDP-glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631740">
        <property type="protein sequence ID" value="MCI63136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSP3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6283" checksum="D2F592C6775EF271" modified="2018-12-05" version="1" fragment="single">QEVQCEFRDLIEPVNIPGSTRVHGKDLLYLVQDRKDDAYKCILMASDRSWLMVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUZ9</accession>
    <name>A0A392TUZ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010667825">
        <property type="protein sequence ID" value="MCI65011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUZ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35516:SF11">
        <property type="entry name" value="CYTOCHROME B6-F COMPLEX SUBUNIT 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5007" checksum="FCCD5A00CCBEEB65" modified="2018-12-05" version="1" fragment="single">ENNCADFLAKLGASSDSDITIHASPPEDFFDILWSDAAETFFLRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TVY1</accession>
    <name>A0A392TVY1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010664443">
        <property type="protein sequence ID" value="MCI64854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TVY1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5226" checksum="EB70BEB9BF32D371" modified="2018-12-05" version="1" fragment="single">GDTPNLQSEFTVEYALKSRSQEVKNRHWRYCPCARRKGVCARRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW27</accession>
    <name>A0A392TW27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cullin-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010674604">
        <property type="protein sequence ID" value="MCI65371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="70" mass="8109" checksum="4DB28522D72DEAE0" modified="2018-12-05" version="1" fragment="single">MITAKGWNKYFEMLNGLIDTGMVKEFRMKAHVFYKVSARMEEEKAIKEDPSLAGKMRAEMGLCEFKETVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U1B7</accession>
    <name>A0A392U1B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010683773">
        <property type="protein sequence ID" value="MCI65845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U1B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9194" checksum="C4EAD2A98576121C" modified="2018-12-05" version="1" fragment="single">EDGIIITRDDIVQVSPVKRRLNSSDSEDDQPVSEDKGIEGASTAANASKKKRADKDKIEEVVIEKEKRKRTAVSESDKVTKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U917</accession>
    <name>A0A392U917_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010758442">
        <property type="protein sequence ID" value="MCI69538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U917"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI69538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6619" checksum="3DCDCEFD85020855" modified="2018-12-05" version="1" fragment="single">MRVAQADMARRAKEKFQIRMHNGNLRVAQGIWRDAPASVFEEIKAILDGTWVYKRST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UB46</accession>
    <name>A0A392UB46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010772358">
        <property type="protein sequence ID" value="MCI70268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UB46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="2961" checksum="4229124648B2D39B" modified="2018-12-05" version="1" fragment="single">MDLSDGGRKVTARGDDPTVVKEGSGGGGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UI08</accession>
    <name>A0A392UI08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010815983">
        <property type="protein sequence ID" value="MCI72347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UI08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7488" checksum="5935CD61DB6D8C66" modified="2018-12-05" version="1" fragment="single">MNLSPNLSETFEGLGRMPQQVTPMSHSPHSLARVPEEEAQQYFTSDDFLKIESLKETKATLRAGYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UMU3</accession>
    <name>A0A392UMU3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010870305">
        <property type="protein sequence ID" value="MCI74891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UMU3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223:SF10">
        <property type="entry name" value="AMINOTRANSFERASE-LIKE PLANT MOBILE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33223">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI74891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7531" checksum="70DE0A60D9E34B74" modified="2018-12-05" version="1" fragment="single">MAWYQSLAPRSVFSWRDLTEQFCRHFTTSRRQPKTVATLEAIIQGKDEPLRNFIERFNKEAVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPU9</accession>
    <name>A0A392UPU9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010861858">
        <property type="protein sequence ID" value="MCI74486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPU9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7332" checksum="E06250A13B3C31EB" modified="2018-12-05" version="1" fragment="single">MSTKQVKESVKEQAELFAVFASLKLESKVKVEELPVVREFPDVFPGNVSDVPPEREVEFTIDLVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URB7</accession>
    <name>A0A392URB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010879086">
        <property type="protein sequence ID" value="MCI75287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7880" checksum="99EBD62248ECCDFA" modified="2018-12-05" version="1" fragment="single">MAAAARTNAQIAEALAALTNIVARDHQPGSDVEVRLERFMKQKPPTFIGGYNPDGAYKWLEELETIFEAMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UTP2</accession>
    <name>A0A392UTP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">COBRA-like protein 7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010893318">
        <property type="protein sequence ID" value="MCI75886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UTP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31052">
        <property type="entry name" value="COBRA-LIKE PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31052:SF3">
        <property type="entry name" value="COBRA-LIKE PROTEIN 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="7445" checksum="81D5F599583C051B" modified="2018-12-05" version="1" fragment="single">SAVGNGTIFAGSSVIDLKTAATTAGDLTQMQVQVEMVGTTLGVAPPSVPMPSTINLANDGFICGEPASQGSYAVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWZ5</accession>
    <name>A0A392UWZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010978161">
        <property type="protein sequence ID" value="MCI79642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6249" checksum="3341FC5A6291AD16" modified="2018-12-05" version="1" fragment="single">SITRTQNSVCAAGCVEDDAADDMLPQTLIFVQPCSIYLKLRMLLNAGGSSSFHGKGLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UX35</accession>
    <name>A0A392UX35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ankyrin repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010999272">
        <property type="protein sequence ID" value="MCI80596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UX35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI80596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6046" checksum="476339D2DDFC75D9" modified="2018-12-05" version="1" fragment="single">MPETEIVKVMTEINDHGSVLHLCVCYNHLEALKILVESMRGDVDQFLSSKDKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UY02</accession>
    <name>A0A392UY02_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cullin-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010980952">
        <property type="protein sequence ID" value="MCI79771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UY02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="74" mass="8771" checksum="B5024327A76B08C7" modified="2018-12-05" version="1" fragment="single">MEQPVDFESLRANGFDVKKLFQDQVWLGYFDILNGPVYTQLIKDFWKRCDVITPEEADKEYNRKVAEDPENNRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZM4</accession>
    <name>A0A392UZM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011019809">
        <property type="protein sequence ID" value="MCI81466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6401" checksum="9CD4E4C7B48DF7F5" modified="2018-12-05" version="1" fragment="single">MWEEWATGQGVIEDQNHSIMQQQTAALIEPHWLPPAPGYLKCNVDASFYDAAGALGWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2C2</accession>
    <name>A0A392V2C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011021636">
        <property type="protein sequence ID" value="MCI81552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017451905" evidence="1">
        <location>
            <begin position="19"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4007" checksum="2CAD5B0B1B9D143A" modified="2018-12-05" version="1" fragment="single">MRRIILVLQLWTIPLEVTFPCSLSLSSSRPIELPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V313</accession>
    <name>A0A392V313_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011028900">
        <property type="protein sequence ID" value="MCI81833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V313"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6255" checksum="2249486F176CD2DA" modified="2018-12-05" version="1" fragment="single">GGYNPEGAIKWIEELEIIFEAMGCTEENKTVLGTYVRREEANVWWKNVKLRLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V3E8</accession>
    <name>A0A392V3E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011031778">
        <property type="protein sequence ID" value="MCI81963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V3E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6174" checksum="A46F1900424FB3F2" modified="2018-12-05" version="1" fragment="single">MVKNESVELDETDMMSTTPDDFRVNPVHLTPKKEGSKKTPKRSSKKKIKKWKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V461</accession>
    <name>A0A392V461_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrotransposon gag protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011056337">
        <property type="protein sequence ID" value="MCI82994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V461"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="46" mass="5419" checksum="EDB5BD4A0F091DFF" modified="2018-12-05" version="1" fragment="single">REMKKLRNKEISSVKVVWGGQAGEYATWELENKFRESYPELFSVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V514</accession>
    <name>A0A392V514_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011064870">
        <property type="protein sequence ID" value="MCI83344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V514"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3540" checksum="C95EE41B8BEB8781" modified="2018-12-05" version="1" fragment="single">MHDNEKVAKEDVRGVGQTIGVRYSGADSNMFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7X9</accession>
    <name>A0A392V7X9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011088076">
        <property type="protein sequence ID" value="MCI84317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7X9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4489" checksum="18D0394EE5DD00E2" modified="2018-12-05" version="1" fragment="single">GRKRRMDALEQENTELRGEMTALKADLEKLNAMVESLVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VE56</accession>
    <name>A0A392VE56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011107319">
        <property type="protein sequence ID" value="MCI85105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VE56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8354" checksum="72D509D32CBA97E4" modified="2018-12-05" version="1" fragment="single">RDGHLKRFVQRKENPRPEHRGASVVEEEKPAPGGQEPKQIAVSIWRPEDFYVPEDISAEFSALIRWENFPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEC4</accession>
    <name>A0A392VEC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011100727">
        <property type="protein sequence ID" value="MCI84850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2499" checksum="312953441299F051" modified="2018-12-05" version="1" fragment="single">GWTARGATCLLVKLLLLDVARSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIF4</accession>
    <name>A0A392VIF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011172937">
        <property type="protein sequence ID" value="MCI87697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2791" checksum="8AC976467A70F54E" modified="2018-12-05" version="1" fragment="single">MHARFDEKEPDNMSELVEGISDLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VKT9</accession>
    <name>A0A392VKT9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011170381">
        <property type="protein sequence ID" value="MCI87601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VKT9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="43" mass="5198" checksum="6012B9328CF2DC36" modified="2018-12-05" version="1">MKLFIKIRSSSTEMEEIDVVRLTARIEEEVVRRQKRKNLNSTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLV9</accession>
    <name>A0A392VLV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011165014">
        <property type="protein sequence ID" value="MCI87400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5134" checksum="A361BB97BC4BED14" modified="2018-12-05" version="1" fragment="single">MFPRVIHPPSARDICRVSSNSKYSPNHYTPKEIVISVDLYNSTNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VML5</accession>
    <name>A0A392VML5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011198372">
        <property type="protein sequence ID" value="MCI88639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VML5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI88639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="4765" checksum="44356055666B78D9" modified="2018-12-05" version="1" fragment="single">MRLEEATAQAASAGVDETMVDNASDEEEEADSEAEEEGGDSSGSASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VT93</accession>
    <name>A0A392VT93_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAM10 family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011277272">
        <property type="protein sequence ID" value="MCI91618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VT93"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4011" checksum="EEA977C63B0605DB" modified="2018-12-05" version="1" fragment="single">MPGGFPGAGGMPGGFPGAGGAPGGFPGAGGAPGGVPGNVDFSQILN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTW7</accession>
    <name>A0A392VTW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011283647">
        <property type="protein sequence ID" value="MCI91844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3759" checksum="FDC9220CEF98E347" modified="2018-12-05" version="1" fragment="single">EDAIARSNEVNIMAPRKLELDEVSSGDVGGGEDGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWA6</accession>
    <name>A0A392VWA6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011281724">
        <property type="protein sequence ID" value="MCI91762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWA6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5364" checksum="907BF31A44C73228" modified="2018-12-05" version="1" fragment="single">MCSGLDQKLAQFRSCSAKRADGPARIKHSAAPPRAPTNLDTCSSGYTHFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYG0</accession>
    <name>A0A392VYG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011317526">
        <property type="protein sequence ID" value="MCI93017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4731" checksum="A333E385E718728F" modified="2018-12-05" version="1" fragment="single">HGGVTHITACFSGIRRSFSGAWCLQRSSTLHTDSLIHQSCVIGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4Z3</accession>
    <name>A0A392W4Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ethylene-responsive transcription factor RAP2-7-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011343747">
        <property type="protein sequence ID" value="MCI93975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7062" checksum="B16742EC532EB7F4" modified="2018-12-05" version="1" fragment="single">ESSGSFDSSVVNTADTEDSSYYGYAYAYNFAILNNNNSSVDNATISGELQHSGAGESGVRTIQLFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5A6</accession>
    <name>A0A392W5A6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011370620">
        <property type="protein sequence ID" value="MCI94929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5A6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5599" checksum="9C28046CC6DC1BFC" modified="2018-12-05" version="1" fragment="single">MLVVLVEQQARNDVRDTFQICQDVRAELERSLEAGEVVPGTPMFDTVHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5B7</accession>
    <name>A0A392W5B7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397984">
        <property type="protein sequence ID" value="MCI95838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5B7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4274" checksum="990AFE3859490500" modified="2018-12-05" version="1" fragment="single">MAESSENHRLVDTITDPKLDWVGPEPRGIASVITPTALGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WJB2</accession>
    <name>A0A392WJB2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011459656">
        <property type="protein sequence ID" value="MCI97955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WJB2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5112" checksum="0AFD388734014F81" modified="2018-12-05" version="1" fragment="single">GSAAVAFCKAPARIRPEAVAGSTRIRPEAVADSACNRPVIERTLWAKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWN9</accession>
    <name>A0A392MWN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavonol synthase/flavanone 3-hydroxylase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021008">
        <property type="protein sequence ID" value="MCH91712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MWN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="entry name" value="B-lactam Antibiotic, Isopenicillin N Synthase, Chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51197">
        <property type="entry name" value="Clavaminate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isopenicillin N synthase-like Fe(2+) 2OG dioxygenase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH91712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7689" checksum="67CB6C077BDF7A69" modified="2018-12-05" version="1" fragment="single">MSVSVSVLHRFRICKEKLKQPQVWEDVSHVEGGIIVNIGDMMERWTNCVYQSTLHRVVPTGKERYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6P0</accession>
    <name>A0A392N6P0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029888">
        <property type="protein sequence ID" value="MCH95466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6P0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="18047" checksum="868D24765194AB14" modified="2018-12-05" version="1" fragment="single">MEQMQIFTAVMKMHHKMILDASAGSSIKNKTQAATKELVEQMCQNEYTGTSISLRGASEQCTVTPRRIPGATTQAVCDEMQPYLALPGVGWVIGSIGLPTRMDATDMDPVAKILSVWLVNSLKPCSNSSEIIMDRCHAVYAMLRRWDIRVSRLVAASITGLVTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ND48</accession>
    <name>A0A392ND48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Zinc ion-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035529">
        <property type="protein sequence ID" value="MCH97642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012935">
        <property type="entry name" value="NuBaID_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15835">
        <property type="entry name" value="NUCLEAR-INTERACTING PARTNER OF ALK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15835:SF12">
        <property type="entry name" value="ZINC ION-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07967">
        <property type="entry name" value="zf-C3HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0539">Nucleus</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C3HC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="122"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="232"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="278"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="237"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="314"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH97642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="329" mass="35806" checksum="44A991C499570437" modified="2018-12-05" version="1" fragment="single">LDRGHKINCPWRGNSCPESLVQFPPTSPSALIGGFKDRSDGLLQFYSLPIVATSAVEQMRVTHGPQIDSFIAQLQIQTXXXXXXXXXXXXXGEQAPHSYSYAQKLISLCGWEPRWLPNVLDREEQSAESAKNDYNSDPAKDSAPDPAPSKKEFSTSSRKDTGDNDVLCSEFNCESRSPLLDCSLCGATVRIWDFLTAPRPVHLAPCGADTPQTSKKIASTRGISAASGINEWAAADGAEKERTGDRDEATTSDRRKLASYKGLDLNLKMASGPCRSLTNVASTSNLRNRRPSGSDVGDLEASYESQGPNVRKRRLDDGATRADRPPLSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIF1</accession>
    <name>A0A392NIF1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040956">
        <property type="protein sequence ID" value="MCH99657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NIF1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10272" checksum="5780AF5692C6BE0F" modified="2018-12-05" version="1" fragment="single">WPDIGAYTIGVHALCFCDLGSVHRIFDKGRKWYFARFEVKCYLCVFCCLSRFQKCDCITWKMGERKIKECQRSKCQVKYNVLLGGAAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJP1</accession>
    <name>A0A392NJP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042082">
        <property type="protein sequence ID" value="MCI00051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI00051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9216" checksum="9EE7CB75039C0174" modified="2018-12-05" version="1" fragment="single">PPDHSYGGPNCGPPYQVQRQSPPNQLTIVSTSIHGVYLPPIHLYYASFSSYFELCTRKDVDCMQSGDVTACSRSHHNHKILIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NLP5</accession>
    <name>A0A392NLP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HemK methyltransferase family member 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044289">
        <property type="protein sequence ID" value="MCI00808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052663">
        <property type="entry name" value="RF_glutamine_MTase_cyano"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47441">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47441:SF3">
        <property type="entry name" value="RELEASE FACTOR GLUTAMINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10444" checksum="2F94053293B5B830" modified="2018-12-05" version="1" fragment="single">DKIEIREGSWFEPLKDMEGKLAGLVSNPPYIPSNDISGLQAEVGKHEPRVALDGGIDGMDALLHLCDXADLLLKSGGFFAFEDPNDIPQHNQANCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NMF9</accession>
    <name>A0A392NMF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pyrrolidone-carboxylate peptidase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042723">
        <property type="protein sequence ID" value="MCI00276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NMF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.20:FF:000003">
        <property type="entry name" value="Pyrrolidone-carboxylate peptidase isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.20">
        <property type="entry name" value="Peptidase C15, pyroglutamyl peptidase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016125">
        <property type="entry name" value="Peptidase_C15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036440">
        <property type="entry name" value="Peptidase_C15-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402">
        <property type="entry name" value="PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402:SF1">
        <property type="entry name" value="PYROGLUTAMYL-PEPTIDASE I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53182">
        <property type="entry name" value="Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI00276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="138" mass="14818" checksum="B97DDE380AB74F47" modified="2018-12-05" version="1" fragment="single">QMGSEGPSAAVTTVHITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLVIGSCSILDTAGQGALIPLYQTLQSAVIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDELGWKPQVRLEIGIADAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPC7</accession>
    <name>A0A392NPC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metal tolerance protein 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046760">
        <property type="protein sequence ID" value="MCI01663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.1350:FF:000005">
        <property type="entry name" value="Metal tolerance protein 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1350">
        <property type="entry name" value="Cation efflux protein, cytoplasmic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027470">
        <property type="entry name" value="Cation_efflux_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050291">
        <property type="entry name" value="CDF_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840:SF16">
        <property type="entry name" value="CATION EFFLUX PROTEIN CYTOPLASMIC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840">
        <property type="entry name" value="MITOCHONDRIAL METAL TRANSPORTER 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16916">
        <property type="entry name" value="ZT_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="Cation efflux protein cytoplasmic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Cation efflux protein cytoplasmic" evidence="2">
        <location>
            <begin position="26"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI01663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13426" checksum="B827E83A4D065A31" modified="2018-12-05" version="1" fragment="single">IALYTISNWAKTVMENVWSLIGKTAPPEYLAKITYLCWNHDKEIKHIDTLRAYTFGSNYFVEVDIVVSEEMSLIQAHDIGESLQDKLEKLPEIERAFVHVDLNTTHKLEHKQLKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NUJ5</accession>
    <name>A0A392NUJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051204">
        <property type="protein sequence ID" value="MCI03102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NUJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10927" checksum="D8A2BFEACDFBC3A7" modified="2018-12-05" version="1" fragment="single">MMCGASGKESQGKRCWKVGRREEQEDKVNRDYLVAAVQLPVDENGADKLIGSGGGDGEQFVISHMMSGDFMYLTGSNTLCGSCAMRGFSRIAARHAWDYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NXM2</accession>
    <name>A0A392NXM2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Reverse transcriptase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055764">
        <property type="protein sequence ID" value="MCI04557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NXM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48462:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI04557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="199" mass="22538" checksum="231F358D5D0E9A1B" modified="2018-12-05" version="1">MSSTGVQQCDQLGPPLFALVLHPLIHKIRDNCKFLLHVWNLDDMIVVGDSREVARTLDIIREIGRRLSLDLNISVTDIFGLRAMAINFARGCSLQTLGDRYRDIVVSKGHYIEDLQWRVPSLPIRVGGLGLYSVVEAISYVFVAFKAQSWMLQDHILRDTELCGMNYDFDIASDGLRDTILNFYFSNFATSSPLKPNML</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P315</accession>
    <name>A0A392P315_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Receptor-like protein kinase HSL1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060846">
        <property type="protein sequence ID" value="MCI06134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P315"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.10.10:FF:000041">
        <property type="entry name" value="LRR receptor-like serine/threonine-protein kinase ERECTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001611">
        <property type="entry name" value="Leu-rich_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052592">
        <property type="entry name" value="LRR-RLK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48054:SF25">
        <property type="entry name" value="LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48054">
        <property type="entry name" value="RECEPTOR KINASE-LIKE PROTEIN XA21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00560">
        <property type="entry name" value="LRR_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52058">
        <property type="entry name" value="L domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0433">Leucine-rich repeat</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI06134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="202" mass="22111" checksum="E425AEA8498664B9" modified="2018-12-05" version="1" fragment="single">DLAINNLVGKIPEDLGKLQNLTWLSLSMNSLSGTIPPGFGRNSKLETFHVSSNSLVGKLPENLCYYGELLNLTAFENSLSGELPKSLGNCSSLLDLKIYSNEFSEKLSLNISRFEIANNQFSGRIPSGVSSWTNVVVFDASNNFLNGSIPQEITSLPKLTTLLLDQNQLNGPLPSDIVSWKSLAKFHLNFLDSPISICHLII</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4C2</accession>
    <name>A0A392P4C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">THO complex subunit 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062344">
        <property type="protein sequence ID" value="MCI06592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9468" checksum="8E97E7E65CE12411" modified="2018-12-05" version="1">MIWFSCFQSRAPVKRSVATGSLLKPSKQDPLKEDGGSGKTVTRTSGSSSSHKDLQIHAPDGRHTGTNISSVSANGNSILGSTKVLVLLMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PF94</accession>
    <name>A0A392PF94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076366">
        <property type="protein sequence ID" value="MCI10474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PF94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10741" checksum="2189D352463EDC28" modified="2018-12-05" version="1" fragment="single">ILSNPKIGVLALRSIQGTGDFYYSPIAREKHLKLAISSSGMNAQRGQASNLQELPVLVRKLMGCPHCCPIPLPKRRQQQSSYRSGLATRGRDLKTCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PHS8</accession>
    <name>A0A392PHS8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010079220">
        <property type="protein sequence ID" value="MCI11197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PHS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF463">
        <property type="entry name" value="REVERSE TRANSCRIPTASE TY1_COPIA-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="183" mass="20708" checksum="0A54453A7A13BD4F" modified="2018-12-05" version="1" fragment="single">RYLKFTLNHGLMLKKPIHLQLQAYSDADWGGNIDDKTSTSAFIIYLGGNPISWLSKRQKTVARSSTEAEYRSVANTAAEIMWLLNLLSELGLKSQLPSLFCDNIGTTYLCANPVFHSRMKHIALDYHFVRQLVQMGKLRVAHISTRDQLADILTKPLSRARFSLLRDKIGVTNGDPILRGHNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PRG1</accession>
    <name>A0A392PRG1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">GTP cyclohydrolase 1</fullName>
            <ecNumber evidence="3">3.5.4.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">GTP cyclohydrolase I</fullName>
        </alternativeName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GTP cyclohydrolase I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010090684">
        <property type="protein sequence ID" value="MCI14040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PRG1"/>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006729">
        <property type="term" value="P:tetrahydrobiopterin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001474">
        <property type="entry name" value="GTP_CycHdrlase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020602">
        <property type="entry name" value="GTP_CycHdrlase_I_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109:SF7">
        <property type="entry name" value="GTP CYCLOHYDROLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109">
        <property type="entry name" value="GTP CYCLOHYDROLASE I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01227">
        <property type="entry name" value="GTP_cyclohydroI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55620">
        <property type="entry name" value="Tetrahydrobiopterin biosynthesis enzymes-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP cyclohydrolase I" evidence="7">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00030854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI14040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="175" mass="19121" checksum="C44CAC8D6A384466" modified="2018-12-05" version="1" fragment="single">MLPFQVKCHVGYVPSGQRVVGLSKLSRVAEVFAKRLQEPQRLADEVCLALQQGIRPAGVAVVLQCTHIHFPDIESIFLESNQKGWVKIHVSSGSGVFENKNADVWADFFYLIKSRGVDMENIHVRGSSDQCWCPSLSALSSKVSSKIGPINPAMVTAVSSILNSLGEDSVRKELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PS56</accession>
    <name>A0A392PS56_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010093308">
        <property type="protein sequence ID" value="MCI14664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PS56"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="6014" checksum="78392867D139BA1F" modified="2018-12-05" version="1" fragment="single">MDNSYFLMHSSKFPTYGNNMHVFSSNKQTKRLSSGNIHLPDMLSAMLTRVFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZE9</accession>
    <name>A0A392PZE9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA double-strand break repair Rad50 ATPase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105608">
        <property type="protein sequence ID" value="MCI17471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="56"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI17471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="139" mass="16437" checksum="0DCCF4121439A769" modified="2018-12-05" version="1" fragment="single">MKIKLKTKTAPPPXSTSTNSNNNFEQKTIPELVNVLRGTCQFDTYDTIEGXLVNRYTRLRTEIQQELQQKFELEKLQLQEKLQMEERLRMQAEEEVKKKDKLCEKGKRVQESYEKLLKEVKAGLAYRDNHIITELKKKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q126</accession>
    <name>A0A392Q126_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010106150">
        <property type="protein sequence ID" value="MCI17592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q126"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI17592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7095" checksum="88415C35E0757B2B" modified="2018-12-05" version="1" fragment="single">NDPLAISGPLKIIDPTRENTKFVLENIIIVSSPNADGAGDIGRCNPFAVRGVTGDGDGIRMFAVNGNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6N5</accession>
    <name>A0A392Q6N5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Transmembrane ascorbate ferrireductase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="13 14">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">cv. 10/8</strain>
            <tissue evidence="13">Leaf</tissue>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116591">
        <property type="protein sequence ID" value="MCI19794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6N5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1770">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043205">
        <property type="entry name" value="CYB561/CYBRD1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006593">
        <property type="entry name" value="Cyt_b561/ferric_Rdtase_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10106">
        <property type="entry name" value="CYTOCHROME B561-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10106:SF22">
        <property type="entry name" value="TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03188">
        <property type="entry name" value="Cytochrom_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50939">
        <property type="entry name" value="CYTOCHROME_B561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome b561" evidence="12">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="13">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="MCI19794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="98" mass="10683" checksum="9315965700FFE209" modified="2018-12-05" version="1" fragment="single">WIFGFVVFFYPGGSSELRRESVPWHVLFGLFVYILALATSSLGFLEKLTFLESSGVAKYGSEALLVNFNAIITILFGTFVVLSAISQAPPAADDYAPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8X8</accession>
    <name>A0A392Q8X8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Abscisic-aldehyde oxidase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116166">
        <property type="protein sequence ID" value="MCI19705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8X8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.50">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908:SF132">
        <property type="entry name" value="ALDEHYDE OXIDASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="CO dehydrogenase molybdoprotein N-domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde oxidase/xanthine dehydrogenase a/b hammerhead" evidence="3">
        <location>
            <begin position="38"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI19705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="11727" checksum="F9D32816F1DE062F" modified="2018-12-05" version="1" fragment="single">NLFPTLLSSGKQILESGSEYRPIGEPVMKSGAAIQASAYIYSAKPLARITSIKLRQELELDGVRDILSSKDIPNGGENLGAKSRFGSEPLFAEEIARCVGERLAFVVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q916</accession>
    <name>A0A392Q916_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short internode related sequence</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119576">
        <property type="protein sequence ID" value="MCI20382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q916"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="35"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI20382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15385" checksum="A6DFEEF5C679B465" modified="2018-12-05" version="1" fragment="single">AFADWAATSSSTVRAAAPEDLSLGFNAGPTAGNAGPSTGPTTGIWPGGGGGSRSVNYGPEMGMFVVAPSPYHPHHHHHSHHNNHHEAIISDPHSLNPATALGVGVIPLLTASPLDNERQQQGIQFWHEQQQQHQHHSNYLKKHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q918</accession>
    <name>A0A392Q918_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pectate lyase 12-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the polysaccharide lyase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120766">
        <property type="protein sequence ID" value="MCI20618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q918"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030570">
        <property type="term" value="F:pectate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="entry name" value="Single-stranded right-handed beta-helix, Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018082">
        <property type="entry name" value="AmbAllergen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045032">
        <property type="entry name" value="PEL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683:SF207">
        <property type="entry name" value="PECTATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31683">
        <property type="entry name" value="PECTATE LYASE 18-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00807">
        <property type="entry name" value="AMBALLERGEN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="Pectin lyase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0134">Cell wall</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI20618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="144" mass="15893" checksum="29561DECD1437870" modified="2018-12-05" version="1" fragment="single">MLTISNKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQDAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHH7</accession>
    <name>A0A392QHH7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Chaperone protein ClpB1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133546">
        <property type="protein sequence ID" value="MCI22996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHH7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd19499">
        <property type="entry name" value="RecA-like_ClpB_Hsp104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050130">
        <property type="entry name" value="ClpA_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638">
        <property type="entry name" value="ATP-DEPENDENT CLP PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11638:SF18">
        <property type="entry name" value="HEAT SHOCK PROTEIN 104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="3">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Clp ATPase C-terminal" evidence="4">
        <location>
            <begin position="115"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI22996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="167" mass="18667" checksum="297675D9B66CD40C" modified="2018-12-05" version="1" fragment="single">YVGHEEGGQLTESVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMEVARNQVMQEVRKHFRPELLNRLDEVVVFDPLSHEQLRKVSRLQMKDVANRLAEKGVALAVTDAALDYILAQSYDPVSVIISSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QKN6</accession>
    <name>A0A392QKN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010141549">
        <property type="protein sequence ID" value="MCI24444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QKN6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI24444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="188" mass="20662" checksum="83360AEF99B8F79E" modified="2018-12-05" version="1" fragment="single">DDKLVIVSGEDDTLVSHLGSFRYVETGTDVLETAFQALEIANAVTISPQSVTPTPRASITSWRNLKTALDEGYLEGWGRVLTLPEKKDRLGLGYQPCSGSLMERQGRFPSIQETFHGAGFRSENQINMMEHVEISIDSLEASFQTLKITNVEKKGSPSGNQASKASITSWKSLKMAIDNKLLEGWGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR57</accession>
    <name>A0A392QR57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein AUXIN RESPONSE 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010150758">
        <property type="protein sequence ID" value="MCI26006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QR57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4216" checksum="039FD711180E5DC4" modified="2018-12-05" version="1" fragment="single">MPMQLIWSSDWSEEWIREGNRVAGNLPQAKFVTHSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVU4</accession>
    <name>A0A392QVU4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ARM REPEAT PROTEIN INTERACTING WITH ABF2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010165562">
        <property type="protein sequence ID" value="MCI28418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVU4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044282">
        <property type="entry name" value="ABAP1/ARIA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46710">
        <property type="entry name" value="ARM REPEAT PROTEIN INTERACTING WITH ABF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46710:SF12">
        <property type="entry name" value="ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5440" checksum="3FC9C44E20F6C7B2" modified="2018-12-05" version="1" fragment="single">LELLIGLLGSSSSKQQLDGAVALCKLANKASALSPIDAAPPSPTPQASAFIYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QW08</accession>
    <name>A0A392QW08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polypyrimidine tract-binding protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010162998">
        <property type="protein sequence ID" value="MCI28014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QW08"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="75" mass="8140" checksum="509C50432A8D2B86" modified="2018-12-05" version="1" fragment="single">VQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNVQPSVSGQQQAPMTGPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QXN8</accession>
    <name>A0A392QXN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH dehydrogenase (Ubiquinone) flavoprotein 1 mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168192">
        <property type="protein sequence ID" value="MCI28807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QXN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005739">
        <property type="term" value="C:mitochondrion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="GOC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006120">
        <property type="term" value="P:mitochondrial electron transport, NADH to ubiquinone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.11540:FF:000001">
        <property type="entry name" value="NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="entry name" value="NADH-ubiquinone oxidoreductase 51kDa subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050837">
        <property type="entry name" value="ComplexI_51kDa_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001949">
        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11780:SF10">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN 1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11780">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="Nqo1 FMN-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00644">
        <property type="entry name" value="COMPLEX1_51K_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="NADH-ubiquinone oxidoreductase 51kDa subunit FMN-binding" evidence="6">
        <location>
            <begin position="5"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI28807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="168" mass="18179" checksum="8CA436A53D77A283" modified="2018-12-05" version="1" fragment="single">VSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RA90</accession>
    <name>A0A392RA90_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198488">
        <property type="protein sequence ID" value="MCI32766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RA90"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9563" checksum="417EA50A1C21020C" modified="2018-12-05" version="1" fragment="single">FPSNWSDLPDSVEGSVNAETESSLKTMEAKVESLENELAVMRSSLTAVENAVRDMPAALMTMLEKSMGKSLQISEQCSESEGDWSFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFB1</accession>
    <name>A0A392RFB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010212228">
        <property type="protein sequence ID" value="MCI34275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017414190" evidence="1">
        <location>
            <begin position="20"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6444" checksum="DB2ADD1412B47F09" modified="2018-12-05" version="1" fragment="single">VVFVIVVVVLVVVQKMTLAYLQKDAEQLIRIRCFTKFCDTYHQSFSFFVKISSVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGS1</accession>
    <name>A0A392RGS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010217061">
        <property type="protein sequence ID" value="MCI34785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RGS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI34785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7970" checksum="0490D4C0EE7D3648" modified="2018-12-05" version="1" fragment="single">EPDLEETVIDGWGVNENIEIVDCVARCANKLQGWGKRKRVKFKEEIEECVREMEALRDDQGEAESRRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIX3</accession>
    <name>A0A392RIX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010226867">
        <property type="protein sequence ID" value="MCI35766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7538" checksum="E9D74A81A9CB7B74" modified="2018-12-05" version="1" fragment="single">PSEKKEVGGGDRVEKATKAIEDVRKETAAHVSGSRIKTDMVVLENSSEGNAQLVVSGDQSFAEAVLRRVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKX9</accession>
    <name>A0A392RKX9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010236672">
        <property type="protein sequence ID" value="MCI36714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKX9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8891" checksum="6500B9DA142B8246" modified="2018-12-05" version="1" fragment="single">MRRAVDIGLFKGFPIRSGGLSISHLQYADDTLCIGEASVENIWVIKAILRGFELASDLRVNFWKSSLMGINVSDNFMEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RR58</accession>
    <name>A0A392RR58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Epoxide hydrolase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010257288">
        <property type="protein sequence ID" value="MCI38574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RR58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43329">
        <property type="entry name" value="EPOXIDE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7214" checksum="633C930BED7C1F12" modified="2018-12-05" version="1" fragment="single">GFPELWYSWRHQIAALGSLGYRAVAPDLRGYGDTEAPASISSYTIFHLVGDVVGLIDSLGVDQPLPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRD8</accession>
    <name>A0A392RRD8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010261071">
        <property type="protein sequence ID" value="MCI38889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9967" checksum="DA48625533CD6336" modified="2018-12-05" version="1" fragment="single">VDMNVYPSYEEEDGGGMGSSAKEEDVADMNVYEEKAFVDMNMYPSYEEEEVVNDMNVYEEDADMNVYPSYEEEALNDNNSGELSKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RW70</accession>
    <name>A0A392RW70_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010279346">
        <property type="protein sequence ID" value="MCI40407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RW70"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8676" checksum="04240CC46BFFA283" modified="2018-12-05" version="1">MVPISSLQVILTDEEPNRVHDAESVAFRVEAERLFNIGSNLGCTRNGERITMIERLMDLEEKEDVIVDDLEEDDVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZC8</accession>
    <name>A0A392RZC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010298688">
        <property type="protein sequence ID" value="MCI41978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3485" checksum="48A6850CAC10192E" modified="2018-12-05" version="1" fragment="single">SLSKYSSDRMNKILATRLAQRAYPAMGALLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1V9</accession>
    <name>A0A392S1V9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010297010">
        <property type="protein sequence ID" value="MCI41845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1V9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7691" checksum="F5FB3476A2C58FFA" modified="2018-12-05" version="1">MAIFCFRDASRRAAPSRSSSSRSNSSLSISPLISFSMGISILNDDAPVSTGMTASVPQVSLKGVSPIVECGVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S469</accession>
    <name>A0A392S469_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010320851">
        <property type="protein sequence ID" value="MCI43691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S469"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6887" checksum="3375C389EA5940B0" modified="2018-12-05" version="1" fragment="single">MARCAVQSETTGILSGTCASRSLVRRSAQLNQAVKRNRLEVVRRAGWAGATRQYKNSSCKCVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5E4</accession>
    <name>A0A392S5E4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010320439">
        <property type="protein sequence ID" value="MCI43652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5E4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5361" checksum="26EF68FB9CE5AC12" modified="2018-12-05" version="1" fragment="single">MSSFIVHLGLNSDKVTSLAEIEVFDEDSWSTTARMTSFLPTENAGRVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6J6</accession>
    <name>A0A392S6J6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010319743">
        <property type="protein sequence ID" value="MCI43600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6J6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="4770" checksum="FB5DA8B91D568626" modified="2018-12-05" version="1" fragment="single">PVTVRGIGEALNKVDTGSKGSDADIGRSGSTKTAKENRVKSGQLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SA94</accession>
    <name>A0A392SA94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010348308">
        <property type="protein sequence ID" value="MCI45768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SA94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.10.10:FF:000007">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053134">
        <property type="entry name" value="RNA-dir_DNA_polymerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559:SF444">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24559">
        <property type="entry name" value="TRANSPOSON TY3-I GAG-POL POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="8">
        <location>
            <begin position="4"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI45768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7273" checksum="BDA3FDC45A243FB4" modified="2018-12-05" version="1" fragment="single">DELLDELHGSCHFSTLDLRSGYHQILLAPEDTFKAAFRTIDGHFEFLVMPFGLSNPPPLFRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SD80</accession>
    <name>A0A392SD80_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010364327">
        <property type="protein sequence ID" value="MCI46893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SD80"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3095" checksum="7DC9A07BE897818D" modified="2018-12-05" version="1" fragment="single">STLAESRHGSPGLALTLGLSGLPRCDLASTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SDM0</accession>
    <name>A0A392SDM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010365547">
        <property type="protein sequence ID" value="MCI46978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SDM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="7245" checksum="FDB4447A10C6861C" modified="2018-12-05" version="1" fragment="single">MKRATEKRSNPQRKERKSEVASSSKKNEKRKLKIKQEVVTLESDETDSDWAEYLRTYDPSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEP5</accession>
    <name>A0A392SEP5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010360680">
        <property type="protein sequence ID" value="MCI46664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEP5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7035" checksum="71B3F340DF616ECF" modified="2018-12-05" version="1" fragment="single">DDMAEGCAGHVGDDIVCEMEVEELEREGDEGSSKVRRPAWVNPFESQPVPKEFPGGDVRYIGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIW0</accession>
    <name>A0A392SIW0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010386095">
        <property type="protein sequence ID" value="MCI48387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIW0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10464" checksum="9C3E0E4396E245F2" modified="2018-12-05" version="1" fragment="single">PDMYIGHPFVITTLCRLEHVLTWEDTDEIAPAERPLVRTFFQRAVRNLQAAEAAAAAPQPPPQPAAQHEQHHDPPHIPHQHQYSDFELGMAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SK32</accession>
    <name>A0A392SK32_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010398139">
        <property type="protein sequence ID" value="MCI49231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SK32"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2166" checksum="771918EAEE59CD14" modified="2018-12-05" version="1" fragment="single">MLGSPGELGRNNEVNAPGPQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SKR3</accession>
    <name>A0A392SKR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010387584">
        <property type="protein sequence ID" value="MCI48520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SKR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="2319" checksum="91A33AAADB6AAAAA" modified="2018-12-05" version="1" fragment="single">DDDDDDDDDDDDDDDDDDKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SPP8</accession>
    <name>A0A392SPP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010423082">
        <property type="protein sequence ID" value="MCI50858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SPP8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8930" checksum="CD52A2BE204216BF" modified="2018-12-05" version="1" fragment="single">MSAKRVPQEVEEVPCDNVSFHKAAYTQRWNYVCKRRFVMERELGKDILECEEIVELITGAGLMKTMWGVKDCYEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQC2</accession>
    <name>A0A392SQC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter C family member 12-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010418860">
        <property type="protein sequence ID" value="MCI50597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="15"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10637" checksum="94B4D3855FC16FA2" modified="2018-12-05" version="1" fragment="single">MPLTQLTRKNQAFVWDKKCEESFQELKRRLTTAPVLVLPDAKEPFEVYCDASKMGLGGVLMQKGKVVAYALRQLKTHERNYPTHDLELAAVVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ST43</accession>
    <name>A0A392ST43_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430904">
        <property type="protein sequence ID" value="MCI51384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ST43"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8533" checksum="E36DDDEC40A9FF6A" modified="2018-12-05" version="1" fragment="single">EEKGKKKEENEEEKKEVNIRIPLELDVNVKGDVADIKLVKERVDVKPKPDLPKPELPKPDCGGILDMVEAIVGGVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T3D1</accession>
    <name>A0A392T3D1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010493473">
        <property type="protein sequence ID" value="MCI55272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T3D1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6442" checksum="EA837F9D8E67CFA2" modified="2018-12-05" version="1">MTGSAENGSYDNLKATVEELLKQNEDLRSRMEDLEQGDPEYNETEEEEEEEEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T551</accession>
    <name>A0A392T551_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010509402">
        <property type="protein sequence ID" value="MCI56251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T551"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9458" checksum="D25749CD8A86D043" modified="2018-12-05" version="1" fragment="single">MWRKGALREDGEESLSPKKSKGDVTDYEESAVGSEEVIVAPTPSPSHLATIDQIFSSFRGLSFPVPSSAELTTTDRSQQFLDSLGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T8R8</accession>
    <name>A0A392T8R8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010514134">
        <property type="protein sequence ID" value="MCI56560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T8R8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5888" checksum="F2D2C11EB682AA7B" modified="2018-12-05" version="1" fragment="single">MWKTKNYLAMRTDFEDEAAAKLIISDLSDIAVAVNNLAHHIIIMLGVFKKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAD1</accession>
    <name>A0A392TAD1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional corepressor LEUNIG-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010521494">
        <property type="protein sequence ID" value="MCI56975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAD1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003714">
        <property type="term" value="F:transcription corepressor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044716">
        <property type="entry name" value="LEUNIG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44376:SF5">
        <property type="entry name" value="TRANSCRIPTIONAL COREPRESSOR LEUNIG ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44376">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="1">
        <location>
            <begin position="12"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4789" checksum="44AD72405D3DB837" modified="2018-12-05" version="1">MWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TCB7</accession>
    <name>A0A392TCB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LOB domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539805">
        <property type="protein sequence ID" value="MCI58077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TCB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7540" checksum="AC3E38C2F7FB6615" modified="2018-12-05" version="1" fragment="single">LNTWVNSIPLSPLTLQDNKKEVEEEEGENEEIVGDDSDQKPVFDLINEMNSLDTNGSNNIDPKHQVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TDR5</accession>
    <name>A0A392TDR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010560560">
        <property type="protein sequence ID" value="MCI59281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TDR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9898" checksum="6FE372733D27FB68" modified="2018-12-05" version="1" fragment="single">QQQRRHCESKENPNHRRLNRTQQAPTLSLLKEMNNNARSDNRVHNTDDDEHKPTAPAPVKKKIQRIVEKPSTTVKPTYRASQWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TE23</accession>
    <name>A0A392TE23_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">F-box protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010549824">
        <property type="protein sequence ID" value="MCI58657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TE23"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005174">
        <property type="entry name" value="KIB1-4_b-propeller"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051304">
        <property type="entry name" value="SCF_F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123:SF15">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03478">
        <property type="entry name" value="Beta-prop_KIB1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KIB1-4 beta-propeller" evidence="1">
        <location>
            <begin position="16"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="9903" checksum="C2C1D10BBE1D432A" modified="2018-12-05" version="1" fragment="single">LMIGPEDSSVRLLANPVFGGNLKFLVESECKTSLLLVDCHGIDTNALDKDVRFDVFRLDEKEKKWIKLTTLGDMVLFLGGDVAFSASALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJR5</accession>
    <name>A0A392TJR5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transmembrane protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010595659">
        <property type="protein sequence ID" value="MCI61222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJR5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006634">
        <property type="entry name" value="TLC-dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50922">
        <property type="entry name" value="TLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="TLC" evidence="6">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI61222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4078" checksum="C8C415B90BAC35A2" modified="2018-12-05" version="1" fragment="single">MMGAAWVTEMSSPFLHLREILKELGYRDTPLNLAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKD3</accession>
    <name>A0A392TKD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010603166">
        <property type="protein sequence ID" value="MCI61629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI61629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5301" checksum="DF869D243EDF8E8A" modified="2018-12-05" version="1" fragment="single">VNGDTAIVATSIGMAEVAVSPSLSAAATQNLSPQEGYYSNTFWGRDIAVIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR40</accession>
    <name>A0A392TR40_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010616804">
        <property type="protein sequence ID" value="MCI62315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR40"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48451">
        <property type="entry name" value="DUF4218 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48451:SF1">
        <property type="entry name" value="DUF4218 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8952" checksum="21E61444AC5A29CF" modified="2018-12-05" version="1" fragment="single">MRDDVPLKLKELSKGPNDVVKRFSGYLVNGYRFHTMEREARRKTQNSGVTLVSLTASFASSKDENPRTEPVTYFGAIKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TR73</accession>
    <name>A0A392TR73_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010636523">
        <property type="protein sequence ID" value="MCI63408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TR73"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6517" checksum="74FCA5B5D26A2689" modified="2018-12-05" version="1" fragment="single">MLRSCVLEDGGSWGDYLHLIEFAYNNSYHASIGMAPYEALYGRKCRTPLCWTEVGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW12</accession>
    <name>A0A392TW12_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Calvin cycle protein CP12 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010673796">
        <property type="protein sequence ID" value="MCI65343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW12"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080153">
        <property type="term" value="P:negative regulation of reductive pentose-phosphate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039314">
        <property type="entry name" value="CP12-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33921">
        <property type="entry name" value="CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33921:SF15">
        <property type="entry name" value="CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02672">
        <property type="entry name" value="CP12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6735" checksum="DE4FB0419D1484F6" modified="2018-12-05" version="1" fragment="single">MLNQRWTGKASSCRMVTFRPVQAVPESKTGSVEESIKNAEETCAGDATTGECVAAWDEVEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TW18</accession>
    <name>A0A392TW18_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Envelope-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010673149">
        <property type="protein sequence ID" value="MCI65302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TW18"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="77" mass="8316" checksum="18D084D732699F03" modified="2018-12-05" version="1" fragment="single">IVGQSSKVATGTMTRKEVIANLKETCQALDERKTMLKTITSALELEEANEVAEKNVNADADDGHETEVMESDGSEGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UL35</accession>
    <name>A0A392UL35_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832614">
        <property type="protein sequence ID" value="MCI73166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UL35"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5601" checksum="635BFF43BF7D05E9" modified="2018-12-05" version="1" fragment="single">MDLDLALRKDQPTSPTENATSEQRTNYEKWYRSNRMCLMIIKRGIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQI5</accession>
    <name>A0A392UQI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010863762">
        <property type="protein sequence ID" value="MCI74580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6208" checksum="AD4BB06857A69546" modified="2018-12-05" version="1" fragment="single">MNKYRYGLRGDIAHAVSLQSIANFGDLIQKAYSTEATIDFANKERAAVNQQKKDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V048</accession>
    <name>A0A392V048_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011023766">
        <property type="protein sequence ID" value="MCI81636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V048"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5874" checksum="020794527C62C44E" modified="2018-12-05" version="1">MFLRHNPTPFSCDGVNILIEDYAGDPSSDDRIIVIISTAAEQLPDDISCAACFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2S4</accession>
    <name>A0A392V2S4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative reverse-transcriptase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011047439">
        <property type="protein sequence ID" value="MCI82598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2S4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4668" checksum="DA7D8A7AC15ED591" modified="2018-12-05" version="1" fragment="single">MSASKLNELKKKLEELLENRFVRPSVSQWGAPVLLVKKKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4N5</accession>
    <name>A0A392V4N5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011062854">
        <property type="protein sequence ID" value="MCI83258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4N5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="8069" checksum="BC7196F5DF8B2203" modified="2018-12-05" version="1" fragment="single">MPAPNFEFPVYEATEEDDEEIPDEIRRLLDRERKTVQPHEEAIEIINLGSEEDKKEIRIGASLEMTVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6C8</accession>
    <name>A0A392V6C8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Plant organelle RNA recognition domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011075232">
        <property type="protein sequence ID" value="MCI83777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6C8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4712" checksum="9A144CE12E5AE732" modified="2018-12-05" version="1" fragment="single">HVVKPSLDEVEFLELVSWNPDWAITELEKKNMKMLEVEGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6L8</accession>
    <name>A0A392V6L8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011034899">
        <property type="protein sequence ID" value="MCI82100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6L8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8535" checksum="4780B1981E0274B1" modified="2018-12-05" version="1" fragment="single">MSGARRGPGRPRRYVEEDVELEVDPGANMWVRLLQQQQAMHRQYQEQQARAERHHREMMQVLQQQRAEQPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6U3</accession>
    <name>A0A392V6U3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011061014">
        <property type="protein sequence ID" value="MCI83182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6U3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7912" checksum="AEB44257D8BDDEE9" modified="2018-12-05" version="1" fragment="single">HEVQVGLITELGQKTAEIASFTEEKKKLQEELGALQVSMTPVEDDPEAAHGLTTRAELVEKIRALGQDVLDGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V6V1</accession>
    <name>A0A392V6V1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011049247">
        <property type="protein sequence ID" value="MCI82681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V6V1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6221" checksum="2905F9FF108A7271" modified="2018-12-05" version="1" fragment="single">MSTLTPAERRASVLAARERKAQVVAAAAAIVDPLVQLSASEGGSQSAKKKQQEEEGSGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9A9</accession>
    <name>A0A392V9A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011080745">
        <property type="protein sequence ID" value="MCI84013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3498" checksum="0321C7BBFAF36056" modified="2018-12-05" version="1" fragment="single">PGDRPQFGEGAWAGDDDDVDAAAADAFEEDDASD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V9Z7</accession>
    <name>A0A392V9Z7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Wall-associated receptor kinase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011082425">
        <property type="protein sequence ID" value="MCI84079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V9Z7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7229" checksum="3EF96628ACDA7512" modified="2018-12-05" version="1" fragment="single">LKKIDGGNFEFDHLEKVDDSVGSLQSKEVHLPIVGTSMDKRQESSSSPKPLTEKWESKSNTPNASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VBG2</accession>
    <name>A0A392VBG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011085186">
        <property type="protein sequence ID" value="MCI84205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VBG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5912" checksum="95DF6B5FFFF05C98" modified="2018-12-05" version="1" fragment="single">MEVVLAYQSTLNPSGIIKDVLVKIKDLVFPADFVIVDIEEDVDIPIILGRPFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VE92</accession>
    <name>A0A392VE92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011100087">
        <property type="protein sequence ID" value="MCI84820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VE92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6497" checksum="B13E4B81A64CBE41" modified="2018-12-05" version="1" fragment="single">NSDEIDRLSHGPGDGGTHDCKPLLSPPDRTPGIAALRIGIGSYSKVVMVNRTEMEASWYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEB5</accession>
    <name>A0A392VEB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011147966">
        <property type="protein sequence ID" value="MCI86724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5323" checksum="FF7CFF82E4BDE566" modified="2018-12-05" version="1" fragment="single">VFKAKATTISQMLDKVKFVSVETKLVSKPRPREARQGEARTHRLGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEW4</accession>
    <name>A0A392VEW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011139332">
        <property type="protein sequence ID" value="MCI86397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="4208" checksum="1FD65DFCFB74A98D" modified="2018-12-05" version="1" fragment="single">MPLTQLTRKNQAFVWDKRCEDSFQELKRRLTTAPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VGC6</accession>
    <name>A0A392VGC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011142160">
        <property type="protein sequence ID" value="MCI86492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VGC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="16" mass="1528" checksum="0A3DCDCC8AFEF722" modified="2018-12-05" version="1" fragment="single">MASPAVGVGGGDVRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VIC6</accession>
    <name>A0A392VIC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein OBERON 4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011160685">
        <property type="protein sequence ID" value="MCI87223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VIC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="60"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI87223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="7626" checksum="0142E2BD2CDA5DB8" modified="2018-12-05" version="1" fragment="single">QSGSGSEMEEGELVPEPVAKTESEAACKDAAAGRENLQASEDEQVHKKNEFGSSDADVVMEEKQMLLGEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLS0</accession>
    <name>A0A392VLS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011217535">
        <property type="protein sequence ID" value="MCI89358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7041" checksum="547EFBABEB78EBB0" modified="2018-12-05" version="1" fragment="single">MYARTFETLQLTERNLTPYVGSDLQGFNDTTTKPWGFVDLIVTVGANETAKSIKVQFLVVDCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VMQ9</accession>
    <name>A0A392VMQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011224402">
        <property type="protein sequence ID" value="MCI89636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VMQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5286" checksum="E88E75AA8D22548B" modified="2018-12-05" version="1">MRKFLEDAAKGHIALPKQERHPPKKEGGEADKNDKSRVAVNTIAGAFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNB8</accession>
    <name>A0A392VNB8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phospholipase D alpha 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011218146">
        <property type="protein sequence ID" value="MCI89377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNB8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5887" checksum="2F53432C6D0AA878" modified="2018-12-05" version="1" fragment="single">MEMMYSDIADAIKKNIEAHPHDYLTFYCLGKRESKKHGEYTPPEDPAPDSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNG5</accession>
    <name>A0A392VNG5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011230030">
        <property type="protein sequence ID" value="MCI89896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNG5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5911" checksum="DA7A26312AF36276" modified="2018-12-05" version="1" fragment="single">MNNKPPIFKGGYDPDGAQQWIEGIERIFGAMRCLDEHRVLLGGYVLHDEADH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VNR4</accession>
    <name>A0A392VNR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011208589">
        <property type="protein sequence ID" value="MCI89039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VNR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5211" checksum="477AAA48D5D9A526" modified="2018-12-05" version="1" fragment="single">MASRVASVFGCLGEAVKCWVNWRQSYLHESMDSGGRLLYQDMAPFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQD7</accession>
    <name>A0A392VQD7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011198375">
        <property type="protein sequence ID" value="MCI88640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQD7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI88640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="16" mass="1950" checksum="657DE4023289D062" modified="2018-12-05" version="1" fragment="single">WHSSSVCHFNIEDFLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSV5</accession>
    <name>A0A392VSV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011248374">
        <property type="protein sequence ID" value="MCI90573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSV5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4196" checksum="51E0FF68E4AB58D6" modified="2018-12-05" version="1">MLRSAGSKLSVLHLWRKADGSGIGFSDLLVGVFECSMAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWX6</accession>
    <name>A0A392VWX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011265025">
        <property type="protein sequence ID" value="MCI91185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4610" checksum="DF911896B02E5AF8" modified="2018-12-05" version="1" fragment="single">MVLNSSTEWYMNQILRKMRQPLPLAHFKMWDYLLILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXK9</accession>
    <name>A0A392VXK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011294497">
        <property type="protein sequence ID" value="MCI92223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5749" checksum="106F3112E82903AF" modified="2018-12-05" version="1" fragment="single">MKHKPPTFTGGYNPKGAVKWLEEVEIIFEAIGILYAERGSESLVEERQAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VXL0</accession>
    <name>A0A392VXL0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011319460">
        <property type="protein sequence ID" value="MCI93104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VXL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7397" checksum="06807C76109E1448" modified="2018-12-05" version="1" fragment="single">AWTEYRRAGQIEYEAIMNRNEAVFYKQYEAHMKAQEEQRVAASASAATAGGVSPEFTFSELGMDDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYL5</accession>
    <name>A0A392VYL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011304754">
        <property type="protein sequence ID" value="MCI92572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="13" mass="1284" checksum="829C311EE7FCB1F5" modified="2018-12-05" version="1" fragment="single">MAGSSSHSASFSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZC3</accession>
    <name>A0A392VZC3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011282894">
        <property type="protein sequence ID" value="MCI91810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZC3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="5940" checksum="845059526252AF35" modified="2018-12-05" version="1" fragment="single">MTRCHQAPPPSGGCRSVLFHFFPAVLASSAPPVHHSGLSLTSFFSGSRCRSNSINP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1E2</accession>
    <name>A0A392W1E2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative serine/threonine-protein kinase kinX-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011332760">
        <property type="protein sequence ID" value="MCI93579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1E2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="32"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5238" checksum="44A9F57BF0E03E9D" modified="2018-12-05" version="1" fragment="single">MDVMLGPTFSIDVPTSPPFAGNRPTGNVFFTGGDSSESSSSIGTPDDSDIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W1K3</accession>
    <name>A0A392W1K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011310159">
        <property type="protein sequence ID" value="MCI92785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W1K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4202" checksum="A440998BC825F80A" modified="2018-12-05" version="1" fragment="single">MVHHCVALWLAAKKIVLGKAARQSPTAKDRLERETESG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W557</accession>
    <name>A0A392W557_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cell division cycle protein-like/CDC48 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011396446">
        <property type="protein sequence ID" value="MCI95778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W557"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5459" checksum="F7574075124E8F11" modified="2018-12-05" version="1" fragment="single">MCRDTESCTSSSSNSQRKAEEVIIGNAKAIKKLRELITLPLLFPHEANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W5X7</accession>
    <name>A0A392W5X7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011346403">
        <property type="protein sequence ID" value="MCI94070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W5X7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="34"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI94070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4778" checksum="99E20FA0A3235A06" modified="2018-12-05" version="1" fragment="single">MYVSSEAEKADKEVREAKAQAEESKVEAQEAKAHANAQAKASEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7G0</accession>
    <name>A0A392W7G0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Eukaryotic translation initiation factor 5B</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011375136">
        <property type="protein sequence ID" value="MCI95071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI95071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7080" checksum="A6E6BAB6D93C6388" modified="2018-12-05" version="1" fragment="single">PSIRDDENPPQQGGGGKSKKKAPIIDDDEYSIGTELSEETAAPAVVEEKPGKKKGKKGNAKSSAKDNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W808</accession>
    <name>A0A392W808_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative Ty3/Gypsy polyprotein/retrotransposon</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011399626">
        <property type="protein sequence ID" value="MCI95899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W808"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7680" checksum="D417B48381300270" modified="2018-12-05" version="1" fragment="single">MATLAGIMTRDHQPGREDEARLEHFMKHKPPTFTGGYNPEGAMKWLKEVEIIFEAMRCTEEDKTTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC01</accession>
    <name>A0A392WC01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011459691">
        <property type="protein sequence ID" value="MCI97957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI97957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3081" checksum="1A39D956891D5F65" modified="2018-12-05" version="1" fragment="single">QEVGCGRGAELAERSEGQLIGKLSNGFSST</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MZT4</accession>
    <name>A0A392MZT4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010023600">
        <property type="protein sequence ID" value="MCH92842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392MZT4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH92842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="161" mass="17610" checksum="954E04C413DFD19E" modified="2018-12-05" version="1">MENNGEVGDSESKIEISDDSLRCKRLHRRSASLNVFNAEEDSASHNGEVGDSESKIQISKIQIGGNSDSEIDDLRRSIKGLNVFNVEEDSASHSSADNILFKNYEEVSVHRNMLQGLVLISVGESGEVGTEFETAVTVGRVVVSGGVEGRVRRKEKENKKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N532</accession>
    <name>A0A392N532_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028452">
        <property type="protein sequence ID" value="MCH94907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N532"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH94907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11209" checksum="E52BC3AD55255A89" modified="2018-12-05" version="1">MENTNGWLGQPTAMHEKSKDEEDLQDRSTKKVKGGEQNFSGTSSLPKNYADAMEMQQERVERGRSYKAMVVAQDDEKEEATPKTKILMETERRKKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6H7</accession>
    <name>A0A392N6H7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diacylglycerol kinase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029761">
        <property type="protein sequence ID" value="MCH95406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6H7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001727">
        <property type="term" value="F:lipid kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050187">
        <property type="entry name" value="Lipid_Phosphate_FormReg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12358">
        <property type="entry name" value="SPHINGOSINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12358:SF54">
        <property type="entry name" value="SPHINGOSINE KINASE RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="NAD kinase/diacylglycerol kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YegS/DAGK C-terminal" evidence="1">
        <location>
            <begin position="12"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="13684" checksum="302DBB0BAD390B22" modified="2018-12-05" version="1" fragment="single">MNDSLYRVKSAKAGFHAARYKRFGKLCYVIGALQGFMGHQNKDMRIKFNEGEWVTCPQVTAICAGNAKYFGGGMKITPNADPFTGNLEVVILQDFKWYDFVLKLHKLYNGTHLSVKNVSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6K0</accession>
    <name>A0A392N6K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010029668">
        <property type="protein sequence ID" value="MCH95371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="125" mass="14715" checksum="74FAFC15328A4FBB" modified="2018-12-05" version="1" fragment="single">IDSAFFSCSVDQCSQNHQGVKNLVRKMNTAFYEIANEDDVWEAHRDMIHHKLPQIRVMELYIEDFDPETREDHYYLRTMALALSECDDHPYDVVFLEERPPNIVDDVLEGWEDEGYEDLADADDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N792</accession>
    <name>A0A392N792_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030395">
        <property type="protein sequence ID" value="MCH95670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.1270.10:FF:000002">
        <property type="entry name" value="Heat shock 70 kDa protein 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45639:SF4">
        <property type="entry name" value="HSC70CB, ISOFORM G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45639">
        <property type="entry name" value="HSC70CB, ISOFORM G-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), C-terminal subdomain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="145"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="155"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="3">
        <location>
            <begin position="167"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="180"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCH95670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="206" mass="23321" checksum="310010351381331E" modified="2018-12-05" version="1" fragment="single">LNDKYHEFVIASEREGLTXKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYEERGSIVDQFNYVIASYREAAMSTDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLPKYANPVLXVAEIRKKAEAVDRFCKPIMTKPRPAKPAAPQAPPSPASSGSEQQQPQADENASTNENTGDDGNQASSASSEPMETD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NA91</accession>
    <name>A0A392NA91_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032509">
        <property type="protein sequence ID" value="MCH96513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NA91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044174">
        <property type="entry name" value="BC10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003406">
        <property type="entry name" value="Glyco_trans_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31042">
        <property type="entry name" value="CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31042:SF3">
        <property type="entry name" value="OS08G0110400 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02485">
        <property type="entry name" value="Branch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0325">Glycoprotein</keyword>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH96513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="199" mass="23283" checksum="4B8CAC93055985E2" modified="2018-12-05" version="1" fragment="single">RLLANALLDFSNERFVLLSESCIPVYNFPTVYRYLIDSAHSFVESYDDPSRYGRGRYSRNMLPDIQLKHWRKGSQWFELNRALAVYIVSDTQYFSLFRKYCKPACYPDEHYIPTFLNMFHGSLNSNRTVTWVDWSMLGPHPATYGRDNITVSFIQAIRNNGSLCRYNSDMTSICYLFARKFDPSALEPLLNLSSEVMNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NL39</accession>
    <name>A0A392NL39_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Copia-type polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010041445">
        <property type="protein sequence ID" value="MCH99828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NL39"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF517">
        <property type="entry name" value="CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="336" mass="37861" checksum="8097D535E1390286" modified="2018-12-05" version="1" fragment="single">TPNPHNEQGSSSEEDGNQSNTSSENEDLGTRARRPPRWLNDFEVVQNAKGISISQAKYVRDILERFDMLNCNAVQCPTVPGCKLTKEGGGENVDVTRFKQIIGRLMHLTATRPNIMFAVCLISRYMEKPTDVHLLAAKKVLRYVKGTMEFGVQYLKSEEHELLAYTDSDNAGDIDDRKSTFGDVFMLEARVISWSSKKQPVVTLSTTEVEFIAATSCACQVVLKVGEGMLGVCFYLLSKCIVPVYVVKQRRALPWPALPDLACICCILCDNSSTIKLSKNHVMHGRGNYIDIRFHFLRDLAKEEIVELLSNIMTKPLKREAFKELRNKMGVCKRMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM08</accession>
    <name>A0A392NM08_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010044657">
        <property type="protein sequence ID" value="MCI00918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI00918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17472" checksum="FFF64A515952156F" modified="2018-12-05" version="1" fragment="single">GKKGSKAGLMSICGCQLRPAHLLEYYQIVVSLQLRGGTTIGCRQSXLAKSKSQRLSLLNLSGAVSSAHLLEYYQIVVSLQLRVPQSGVDSPSASQSYLKLYVRFGFGVKGELFILHLFCRPLLVGDIGRDPVIAEGVLACLCCCVFCLDMHCWKYNSYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTM0</accession>
    <name>A0A392NTM0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="10 11">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">cv. 10/8</strain>
            <tissue evidence="10">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010051377">
        <property type="protein sequence ID" value="MCI03173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.510.10:FF:001023">
        <property type="entry name" value="Os07g0541700 protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002">
        <property type="entry name" value="RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR27002:SF1090">
        <property type="entry name" value="S-LOCUS LECTIN KINASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 10" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="10">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="MCI03173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9742" checksum="FC771100B272D258" modified="2018-12-05" version="1" fragment="single">MLYLHQDSRLRIIHRDLKTSNILLDSDMNPRVSDFGLARTFRGDLDESNTNRLMGTYGYMPPEYAVHGSFSIKSDVFSFGVIVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4M6</accession>
    <name>A0A392P4M6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010063859">
        <property type="protein sequence ID" value="MCI07013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4M6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="114" mass="13120" checksum="7DE882724EFA498A" modified="2018-12-05" version="1">MASQNQVMVPFAGRWKSLTVTNDGQSFVPEPRVFESDPYNFGFLKNGNKLFRSAPYAANKHYLPWLDRVEKEYEDVWKVYGIFDLIQLSRVGPVYYPEMLLAAVVNPTKNTTPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P735</accession>
    <name>A0A392P735_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010062651">
        <property type="protein sequence ID" value="MCI06675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9750" checksum="4848EB8388E302B4" modified="2018-12-05" version="1" fragment="single">TGTYLGLPSMVGRSKKETFTYTKDRIWKRINSWRSHPLSRAGIRWLAWDKMGCXGGKEQERDFYIHQGPDLEKNKLVEKPPFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P856</accession>
    <name>A0A392P856_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Auxin transport protein BIG</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UBR4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067173">
        <property type="protein sequence ID" value="MCI07927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P856"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009506">
        <property type="term" value="C:plasmodesma"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009926">
        <property type="term" value="P:auxin polar transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025704">
        <property type="entry name" value="E3_Ub_ligase_UBR4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045189">
        <property type="entry name" value="UBR4-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21725:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE UBR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13764">
        <property type="entry name" value="E3_UbLigase_R4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52043">
        <property type="entry name" value="UBR4_E3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="E3 ubiquitin ligase UBR4 C-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="UBR4 E3 catalytic module" evidence="1">
        <location>
            <begin position="1"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="127" mass="14152" checksum="B1FB3B457B1D503F" modified="2018-12-05" version="1" fragment="single">MGAYSYSKRVNLGVGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWDGATLRNNESLCNSLFPVRGPSVPMAQYIRFVDQHWDNLNALGRADGSRLRLVTYDIVLMLARFATGASF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8X6</accession>
    <name>A0A392P8X6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-glucose:glycoprotein glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068119">
        <property type="protein sequence ID" value="MCI08197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8X6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005783">
        <property type="term" value="C:endoplasmic reticulum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003980">
        <property type="term" value="F:UDP-glucose:glycoprotein glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036503">
        <property type="term" value="P:ERAD pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018279">
        <property type="term" value="P:protein N-linked glycosylation via asparagine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009448">
        <property type="entry name" value="UDP-g_GGtrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040693">
        <property type="entry name" value="UGGT_TRXL_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11226">
        <property type="entry name" value="UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11226:SF0">
        <property type="entry name" value="UDP-GLUCOSE:GLYCOPROTEIN GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18400">
        <property type="entry name" value="Thioredoxin_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017428977" evidence="1">
        <location>
            <begin position="26"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="UGGT thioredoxin-like" evidence="2">
        <location>
            <begin position="45"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI08197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22389" checksum="00A9D9D469F81DEF" modified="2018-12-05" version="1" fragment="single">MRFRSGRCCCFLFLVVTTFSLLIVAADYRRPKNVQTALRAKWSGTPLLLEAGELLSKHQQHLFWNFIDIWINANPDANADNVDSHTYTAKYCVKKILEHGSSLVSEPLASLFEFSLILRSASPTLVLYRQLAHDSLSSFPLLHHDHEIIETKNNTTQFDGVSVQSPGGKCCWIDTGEHLFFDVSELQSWLQNPHNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P968</accession>
    <name>A0A392P968_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069653">
        <property type="protein sequence ID" value="MCI08623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035200">
        <property type="entry name" value="Cdc24_OB2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36033">
        <property type="entry name" value="NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36033:SF1">
        <property type="entry name" value="NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17245">
        <property type="entry name" value="CDC24_OB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cell division control protein 24 OB" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9984" checksum="63D2A4EB5DDCB2EE" modified="2018-12-05" version="1" fragment="single">FYDLAGLPSGILKKGREVFLTGCYLRTANXSSGHPXLLPTEYLVILLDENQDDDAMLLGAQFCSDSFSSISLDAVNKGDSYSLYARHHFAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC13</accession>
    <name>A0A392PC13_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010073368">
        <property type="protein sequence ID" value="MCI09643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC13"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9973" checksum="339AF0DB6FF9BD1F" modified="2018-12-05" version="1">MRPTIKIRIHQFSILEVLLSETLPCATTIAVAFPRGSLQAPFFAAASCHQLVSSVRFCWNPFYSLWVPRLRRLGSARIWYFVTLVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PCT5</accession>
    <name>A0A392PCT5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Disease resistance protein (CC-NBS-LRR class) family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072598">
        <property type="protein sequence ID" value="MCI09427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PCT5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="113" mass="12975" checksum="DBCCAA19DF5E5D43" modified="2018-12-05" version="1" fragment="single">DKLVSTELVNNFRSMKLDDSLLKKLMKALRVLIELHDDADVVKDALRYIEVDTLFDEINTEALRCKVKAESQTLTPASQEHMVNLVIPKVLGMILPQALLWMMDLVFMEETMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFW4</accession>
    <name>A0A392PFW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077171">
        <property type="protein sequence ID" value="MCI10674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7374" checksum="5E081F7B2010DE6E" modified="2018-12-05" version="1">MASSKGQQHVNYVQEGQQKQHAFEEEEDVNYNFQLRSKYLGSSGKWYSTFICQTDHNKPCETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJC7</accession>
    <name>A0A392PJC7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Gag-pol polyprotein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083053">
        <property type="protein sequence ID" value="MCI12178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="192"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="218" mass="25040" checksum="5F88B91CB7A37133" modified="2018-12-05" version="1" fragment="single">SKREEKNKEDRGRKTPRGNYIGYTPLNTSRETILQECANVEFAEVGVRPPREIRENPRTDTTKFYKFHCSAGHDTEDCIHLKDVIEDLIKIGKLSRYTTRGGNNINYEKRKYDSSRKTPGRSVSPRRKHSPKRDSPPKKRVEAITAKEKETGDNEGERDPDKKPFVASVTGGPIMPTVRSPEKQQREQSSMEPEHRFHNGRTVESKKGIQGHNQNKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKN8</accession>
    <name>A0A392PKN8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4283 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082470">
        <property type="protein sequence ID" value="MCI12030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025558">
        <property type="entry name" value="DUF4283"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF171">
        <property type="entry name" value="CCHC-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14111">
        <property type="entry name" value="DUF4283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4283" evidence="1">
        <location>
            <begin position="64"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="unsure residue" description="D or N" evidence="2">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="211" mass="24449" checksum="B30844E3C4CF1FB0" modified="2018-12-05" version="1" fragment="single">DVDHSKRKCSFRDKLLGNQEPIPRRETVDLISKKLFRIEFEDGDRRRLRCYADDSVLKDLWLPWQHAIIVKLLGKNLGXLAMRDRLKAIWKLTGDMDILDVGHGFFMIKFDLEVDREKVINGGPWMIFDRYVAIRPWTTDFISSQVKINKTLVWIRFPSLGMEYYDESLLLALATAVGTPVKVDIRTLDASRGKFARVCIEIDLDKPVVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PLL0</accession>
    <name>A0A392PLL0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cationic amino acid transporter 2 vacuolar-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the amino acid-polyamine-organocation (APC) superfamily. Cationic amino acid transporter (CAT) (TC 2.A.3.3) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010083982">
        <property type="protein sequence ID" value="MCI12389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PLL0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015171">
        <property type="term" value="F:amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43243:SF4">
        <property type="entry name" value="CATIONIC AMINO ACID TRANSPORTER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43243">
        <property type="entry name" value="INNER MEMBRANE TRANSPORTER YGJI-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI12389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="12574" checksum="C1A8D1F955AB059C" modified="2018-12-05" version="1" fragment="single">AQLFGGLDNLPFFLLRQHIPGIDIVVDPCAAILVFLVTGLLCFGIKESTVAQGIVTSVNVCALLFVIVAGGYIGFKSGWVGYELPTGYFPFGVDGMLAGSATVFFAYVGFDAVASTAEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQS2</accession>
    <name>A0A392PQS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010089043">
        <property type="protein sequence ID" value="MCI13646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI13646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="71" mass="8106" checksum="0DF4DD4AB713004B" modified="2018-12-05" version="1" fragment="single">MNQNNIFYRQVLAARTAGTNDHNELELLGPEQPECNSKPQKYCSGTPARYHFLIRNVVKGENNGKHQSFTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTY0</accession>
    <name>A0A392PTY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010096947">
        <property type="protein sequence ID" value="MCI15551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6425" checksum="84404CA0B1B98C78" modified="2018-12-05" version="1" fragment="single">SGVYNLKGVESGGERGGDDVEVDVQDFWKWNHGIDIREGDSFCLEVIVESLKLPITCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PV97</accession>
    <name>A0A392PV97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010099052">
        <property type="protein sequence ID" value="MCI16023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PV97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI16023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="18060" checksum="D8E30EC0BF9C88A3" modified="2018-12-05" version="1" fragment="single">MLSEEYPSKQGVSYFPSNVQSFGIQDQDNEYKTNFKSSPHGFSKKVSSPETTSLGSNSYRGVKVFADDWELNSPSESKCSVHDHLHSEQIIQEDDDDYSDDDDFMSSYVIEINSNLRKEDCEASDIDEAIAWAKEKFQSGSSDEESSTRINGNDKTVQKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q406</accession>
    <name>A0A392Q406_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010110244">
        <property type="protein sequence ID" value="MCI18460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q406"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="67"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="9"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11899" checksum="A0CF89E629B21E56" modified="2018-12-05" version="1" fragment="single">IDDNLGSIEKEYSATKEKLENDIKDLKAEYEHKLEQLAKEKEEKWARDRKIFTDEIAHLRAQVATQKDQLTSSLKDKEDVASQPDALSGEKTALEELVEGLQIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QB95</accession>
    <name>A0A392QB95_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123507">
        <property type="protein sequence ID" value="MCI21149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QB95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4728" checksum="21AAE22C2D001E3E" modified="2018-12-05" version="1" fragment="single">MLELCEEQHQAAYEAQEGQDLEDDIMDLINRELNPMFFTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QC07</accession>
    <name>A0A392QC07_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010124763">
        <property type="protein sequence ID" value="MCI21422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QC07"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11353" checksum="E63CFFF985E06E3F" modified="2018-12-05" version="1" fragment="single">IPNIKLQPVFIQYVAVVLVFSVVRRAYCLSVVILQALSYCFSVVAGFFLVSRHSYIGATAATTEWRSYMEVVAAPYMEVDGGLPLKHPRRFRLLYFVFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQN6</accession>
    <name>A0A392QQN6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010154838">
        <property type="protein sequence ID" value="MCI26701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9139" checksum="859BD7F5C6594E6F" modified="2018-12-05" version="1" fragment="single">YDICLXXXXXXXXXXXXXXFWVESSLNRHKNPPVRAWSLSEPRREVARELADPRQEPEIILSILASPRQSSLSEKYWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QRI5</accession>
    <name>A0A392QRI5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153563">
        <property type="protein sequence ID" value="MCI26482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QRI5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7228" checksum="236C69081E574F67" modified="2018-12-05" version="1" fragment="single">FRLESPGETKPESFRVSGDKWREIATISPGDTSSRLANSHYPRPASSNLAWRASSEIGAQPRTWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QSQ6</accession>
    <name>A0A392QSQ6_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Reticulon-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="8 9">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">cv. 10/8</strain>
            <tissue evidence="8">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Endoplasmic reticulum membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158634">
        <property type="protein sequence ID" value="MCI27318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QSQ6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005789">
        <property type="term" value="C:endoplasmic reticulum membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009617">
        <property type="term" value="P:response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003388">
        <property type="entry name" value="Reticulon"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045064">
        <property type="entry name" value="Reticulon-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10994">
        <property type="entry name" value="RETICULON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10994:SF145">
        <property type="entry name" value="RETICULON-LIKE PROTEIN B13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02453">
        <property type="entry name" value="Reticulon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50845">
        <property type="entry name" value="RETICULON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="Reticulon" evidence="7">
        <location>
            <begin position="1"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="MCI27318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="118" mass="14125" checksum="5EA36B153F30751A" modified="2018-12-05" version="1" fragment="single">ETAVRMAKTVRAWIEKSIKWFFIVSTKEDWPVFVGVMARLLAISYVGNCMDFLTFIYIGILAGMTLPLTYNKNEDKIKRCMEWLREKYKRFYEIIDEKAIKKMKSRILNENEKEKKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QW82</accession>
    <name>A0A392QW82_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166562">
        <property type="protein sequence ID" value="MCI28558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QW82"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3361" checksum="AF45F3AF9AC86313" modified="2018-12-05" version="1" fragment="single">WLFSKSIHITQTDPQVGEEEEQYCQNHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWC7</accession>
    <name>A0A392QWC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010166761">
        <property type="protein sequence ID" value="MCI28598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QWC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4708" checksum="0999101C70FC1843" modified="2018-12-05" version="1" fragment="single">MVGTSPVVSRVYFQNSLASHFRFLFWTGVEHSPDRRRARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZZ2</accession>
    <name>A0A392QZZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleolar protein 58-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168524">
        <property type="protein sequence ID" value="MCI28865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QZZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34689">
        <property type="entry name" value="NUCLEIC ACID-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34689:SF1">
        <property type="entry name" value="NUCLEIC ACID-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5971" checksum="1E71E5CAB05548BF" modified="2018-12-05" version="1" fragment="single">QELLQAREKHKEEQVIALKREMESGMAQAMKEQAQLREEMAYQYKLGNFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R0P3</accession>
    <name>A0A392R0P3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010170430">
        <property type="protein sequence ID" value="MCI29125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="152"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="17798" checksum="813736AF968AFB12" modified="2018-12-05" version="1" fragment="single">SDVGPSPSVVAAAIAKGLYPIPAPPPKKVEIAADDWSESNCSEGMNTKIERWRNELTPAYDKDEYDELDEEINKKLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPKGKLFSCFGAAFGVEFSISCGGGNRKKKGGNSKSGLSPSELTYDESSIM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R1W5</accession>
    <name>A0A392R1W5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010178086">
        <property type="protein sequence ID" value="MCI30239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R1W5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34112">
        <property type="entry name" value="C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34112:SF13">
        <property type="entry name" value="OS04G0448200 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="108" mass="12306" checksum="9D73015B0BEC737F" modified="2018-12-05" version="1">MKSRDAPLVDISDANSLTEHRSNITDQNGNVIGEPLKLSSNVEQKHKTKPIIHSEEEEIAFLRSLGWEKNSEDVDDEGLTLEEILDFYDKHAQNCSYDQIFSKLCIKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R612</accession>
    <name>A0A392R612_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tryptophan synthase</fullName>
            <ecNumber evidence="3">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + L-tryptophan + H2O</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="3"/>
    <dbReference type="EMBL" id="LXQA010187825">
        <property type="protein sequence ID" value="MCI31532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R612"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018204">
        <property type="entry name" value="Trp_synthase_alpha_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406:SF1">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE ALPHA CHAIN, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE, ALPHA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00167">
        <property type="entry name" value="TRP_SYNTHASE_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI31532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8406" checksum="8D84CB89453F64DB" modified="2018-12-05" version="1" fragment="single">DSCGSDIIELGVPYSDPLADGPVIQAASTRSLARGTNFDSIISMLKGVVPELSTPIALFTYYNPILKRGTEKFMSIVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R6D8</accession>
    <name>A0A392R6D8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myb-like protein X-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188830">
        <property type="protein sequence ID" value="MCI31652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R6D8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16227" checksum="6778D0F0FA39E6EC" modified="2018-12-05" version="1" fragment="single">FDGNLEARVGGKEKVDEKKDGGKEKVKEKKDEGKEKVKEKKEEGKEKVKKKKDDKRGEKRKNKEEKKGHGKDKDRDKDKKEKTKEHTELKTTEQNKLKENNNVGPIHSNSFTQISKNGHENSVGVENLKKRKEIESNGVPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7Y8</accession>
    <name>A0A392R7Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010197836">
        <property type="protein sequence ID" value="MCI32691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7Y8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5257" checksum="982E21D5D054EDD0" modified="2018-12-05" version="1" fragment="single">SDKWLVAMVLLTDVVSLPSSFPRLSIGLTSECGLKGLLACCYLQRDVGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R806</accession>
    <name>A0A392R806_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA-binding protein 25-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010193295">
        <property type="protein sequence ID" value="MCI32184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R806"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050907">
        <property type="entry name" value="SRSF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23147">
        <property type="entry name" value="SERINE/ARGININE RICH SPLICING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="3" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="RRM" evidence="5">
        <location>
            <begin position="6"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI32184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="9175" checksum="02A559A48FDEAC9C" modified="2018-12-05" version="1" fragment="single">MDQISTSFYFTNFLEELGWGDLWKLFAKYGSVCDVFIPKKMDKWGRRFGFVKFKEVNDVDALSSKLEDVWCESFKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R869</accession>
    <name>A0A392R869_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010194214">
        <property type="protein sequence ID" value="MCI32292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R869"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16845" checksum="F1E94CFC9882FBFE" modified="2018-12-05" version="1" fragment="single">SIRPPAKKAMSAKKIAPEVEDFPCDNVSFHLASYAQRWGIICKRRFSLERELGKDILECEDIVSLIKAAGLIKTVWGLDSCYEKLVREFIVNIPVGCDNPLSKEFQKVFVRGKCVEFSPSIINKALENPDEPHPDIEVSDHVVCKTITAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJK8</accession>
    <name>A0A392RJK8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">VHS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010231640">
        <property type="protein sequence ID" value="MCI36214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJK8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008942">
        <property type="entry name" value="ENTH_VHS"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4262" checksum="6446D01DA0D021E5" modified="2018-12-05" version="1" fragment="single">METSRRAVESYWRSRLIDSATSDEDKVTPVYKLEEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSD5</accession>
    <name>A0A392RSD5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vascular protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010258807">
        <property type="protein sequence ID" value="MCI38700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSD5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4044" checksum="0863BECE16298EAD" modified="2018-12-05" version="1" fragment="single">FDALTGSKISALDIGAPVVRMAYSPTSGHTVVAVLQVGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSR4</accession>
    <name>A0A392RSR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010266975">
        <property type="protein sequence ID" value="MCI39399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="34"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13640" checksum="B476681F570F331C" modified="2018-12-05" version="1" fragment="single">TFSNVRDVNKLLKALNEVCFEHFRVQAKVARFDRQDSTELQRSRMEKGGDKTVREEVLPKKNGLRREVRDAATENIETQEKKDSGDGGTRESSGGLASFEGVKVGEVMISLKGEKRNEANVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYN2</accession>
    <name>A0A392RYN2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010282793">
        <property type="protein sequence ID" value="MCI40686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYN2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4218" checksum="4EF5A0E0DAA9BAA7" modified="2018-12-05" version="1" fragment="single">MAARTNAQIAEALATMTDIMARDHQPGREDETRLERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RZ91</accession>
    <name>A0A392RZ91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010287963">
        <property type="protein sequence ID" value="MCI41110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RZ91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4592" checksum="D2E9739F1DFB7879" modified="2018-12-05" version="1" fragment="single">MQKIGFQTAPCAGRGHSCAGRNNVAVLVVVQLEAAPGVAWPARGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S026</accession>
    <name>A0A392S026_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301991">
        <property type="protein sequence ID" value="MCI42233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S026"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7367" checksum="5BDBC6001ADD3A20" modified="2018-12-05" version="1" fragment="single">MAQIPVKEKACNSKDSNAEGEEDYMDDEDLLDDEPNFDVLVNVVSILPVEYDVPSEVNDEDENFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1G0</accession>
    <name>A0A392S1G0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tobamovirus multiplication protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010301830">
        <property type="protein sequence ID" value="MCI42217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1G0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009457">
        <property type="entry name" value="THH1/TOM1/TOM3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06454">
        <property type="entry name" value="THH1_TOM1-3_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THH1/TOM1/TOM3" evidence="1">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6025" checksum="43F8FCE9F9CDE0C1" modified="2018-12-05" version="1" fragment="single">MTNNVVPASSAGAVGIAVAAIQLTDPSTWWRDIDESPTWQNRIFYTLAVLYGVVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6F7</accession>
    <name>A0A392S6F7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010330378">
        <property type="protein sequence ID" value="MCI44418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6F7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5847" checksum="19225EB9A75AF4DD" modified="2018-12-05" version="1" fragment="single">MVILEPARRAGVLAHCAVQLTSSRSPFWKMRVAQADMTRRAEENFKSERIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S8U0</accession>
    <name>A0A392S8U0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010328448">
        <property type="protein sequence ID" value="MCI44276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S8U0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4555" checksum="C0FAADE77CD4A963" modified="2018-12-05" version="1" fragment="single">MVVYRNSRKPAKDIDIKAIKDLEEKVDQLKYDHEKLPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S925</accession>
    <name>A0A392S925_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010336972">
        <property type="protein sequence ID" value="MCI44907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S925"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="24"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9347" checksum="DD6F6D8A987BC759" modified="2018-12-05" version="1" fragment="single">MGKGKEISKGNTKKKDDSVKKSNQKAAVSSRKTAKPSSSKGEGSRTCRVFLPPKGKKGKPSPKAQQEASSSESFSTDSDYAEFLLTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9D0</accession>
    <name>A0A392S9D0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">RNA recognition motif</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010335480">
        <property type="protein sequence ID" value="MCI44804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9D0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="109" mass="12437" checksum="83B37E530EDAB122" modified="2018-12-05" version="1" fragment="single">WKVGEVFIPAKRDKFGRRFGFARFAEVKDACELLKKIEDTWFGTYKLRANVSKYKRDEDHRREANSSKVKGEQKKMDLARERSQGVSFKEALGVGGGVVSLVTVGREKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEL5</accession>
    <name>A0A392SEL5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010363790">
        <property type="protein sequence ID" value="MCI46857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEL5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="5960" checksum="32DB0781C7A09558" modified="2018-12-05" version="1" fragment="single">RSSEENEINGAVSVDVEDGTAPADDQNWLGLEGVTRVNSLVQLPRFSVERSKSNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SF77</accession>
    <name>A0A392SF77_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Membrane bound O-acyl transferase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010358316">
        <property type="protein sequence ID" value="MCI46496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SF77"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8670" checksum="1B506E9DF807ACE5" modified="2018-12-05" version="1" fragment="single">GGLWYRVVAARYGEAEGKLIAGDRRGSWWWREVSQIRDGDHGVERGWFGESIERQFGNGADTLFWSDPWLGGVSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFQ4</accession>
    <name>A0A392SFQ4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010362251">
        <property type="protein sequence ID" value="MCI46755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFQ4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9333" checksum="25E12253D20CD040" modified="2018-12-05" version="1" fragment="single">MGVENPILYSLPVTTVYLVATRLSLAASSLFPGTLSWRMKSNNGVLQSSSSFTVVTWISTSVLGVAIVSWIIVLLFPAFLVLASLDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJX7</accession>
    <name>A0A392SJX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010387384">
        <property type="protein sequence ID" value="MCI48504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9056" checksum="3F7C220DB934B833" modified="2018-12-05" version="1" fragment="single">GEKSAKVPNPSCNAAHRESQPSPVQNMYTGAAGECKVEPDAAPTVLPAVVVLLLLLPELPVTPSLLSEKMYDLKVAPRGLSHQCPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SL91</accession>
    <name>A0A392SL91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010390847">
        <property type="protein sequence ID" value="MCI48735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SL91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10470" checksum="F3D4AA27DC04F3F0" modified="2018-12-05" version="1" fragment="single">HNHRPPPPAVTTSITDNHNHHPPPSRSSLALSSIFHAGHPLSRDISRYTSHHLYQRPPPSSSSISDGYKSDYDQCLRRRPRPPIFGFAIASRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SLL9</accession>
    <name>A0A392SLL9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Signal recognition 54 kDa protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010406565">
        <property type="protein sequence ID" value="MCI49773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SLL9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="entry name" value="Signal recognition particle SRP54, nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4396" checksum="DD1B34D21DC1F346" modified="2018-12-05" version="1" fragment="single">SGFSKTRNNLSVIDELLLYWNLSDTDKVLDELEEVLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SMM4</accession>
    <name>A0A392SMM4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010404699">
        <property type="protein sequence ID" value="MCI49662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SMM4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI49662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6850" checksum="E4BE3EEB19ACC956" modified="2018-12-05" version="1" fragment="single">WYSNQQLRKERDLAFEALQQWKGEYQKKVQELQDTTGRYQEILRAESAKGQEVEGFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ST53</accession>
    <name>A0A392ST53_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pentatricopeptide repeat-containing protein mitochondrial-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010441014">
        <property type="protein sequence ID" value="MCI52031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ST53"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="17"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6880" checksum="93EFB081A6127D82" modified="2018-12-05" version="1" fragment="single">MTIQANRHRQDRHFEEGQWVYLKLQPYRQQSVHHRESQKLAKRYYGPFRILKRIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STL2</accession>
    <name>A0A392STL2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010433643">
        <property type="protein sequence ID" value="MCI51554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STL2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4237" checksum="71F5502A1428B8AE" modified="2018-12-05" version="1" fragment="single">KIDRVIQALEAEVTEEGGVEGVGDGAGENVQMEGFDESASI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUI2</accession>
    <name>A0A392SUI2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010448056">
        <property type="protein sequence ID" value="MCI52491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUI2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI52491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8894" checksum="40732C6B709ADD79" modified="2018-12-05" version="1" fragment="single">MFDLPRTWSKIVPPLEEKKKSLKRKAVESSHSDFDVDTNVATFAGTSRRSIGRKKVPLSVPPASLDNISFHLENGSVRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4S0</accession>
    <name>A0A392T4S0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010501135">
        <property type="protein sequence ID" value="MCI55762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4S0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6384" checksum="B99BED49A391E5C0" modified="2018-12-05" version="1" fragment="single">GKETVVEQGKTLGRMGGDVCGENDYGKEMVVEQGWTLERMGDDVYGENDWEKEMVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4V7</accession>
    <name>A0A392T4V7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010498042">
        <property type="protein sequence ID" value="MCI55544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4V7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7736" checksum="C2EC5517A9F17559" modified="2018-12-05" version="1" fragment="single">MTCFEMMWLDPQNNICRVHHGALTNNPKQLCTANHFSASLLPLWQLQQRENATTVTRICHRTELVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5K3</accession>
    <name>A0A392T5K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010511350">
        <property type="protein sequence ID" value="MCI56381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2108" checksum="AEBCCA9284DBDC3C" modified="2018-12-05" version="1" fragment="single">AVKTSPSSYSLSQQSLVAPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T5T5</accession>
    <name>A0A392T5T5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010512705">
        <property type="protein sequence ID" value="MCI56461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T5T5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI56461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5672" checksum="CE31C7AA70349D4B" modified="2018-12-05" version="1" fragment="single">MISGLAQNGLGYEANTVFRQMQDAGIRPNSLSITSALSACTDMALLNYGKAIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T678</accession>
    <name>A0A392T678_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010510017">
        <property type="protein sequence ID" value="MCI56292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T678"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="2">
        <location>
            <begin position="39"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI56292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="90" mass="10082" checksum="FC969F596F96048C" modified="2018-12-05" version="1" fragment="single">CPELKDDDDSVHGGDASLGDGYEDAGALVVPRWESEERWVMDSECFYHVCSKKDYFETLELVEDGVVHLGDEKACKVQDMSSVCPTMFDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T9K3</accession>
    <name>A0A392T9K3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010533895">
        <property type="protein sequence ID" value="MCI57729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T9K3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="8726" checksum="233D1BB3B6250F79" modified="2018-12-05" version="1" fragment="single">RVLEETGGESVSRCGGGKICSDWQEDNSSRASFGVESNFEAGEGVFSETESDADVSESCQVLLELQAHRGKRSVVGGASKELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB00</accession>
    <name>A0A392TB00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539739">
        <property type="protein sequence ID" value="MCI58072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5821" checksum="A269EB20A50F21D5" modified="2018-12-05" version="1" fragment="single">MEVLKRLYPNLVKEERASKLDAEFMVNMNIKITISVPTESSSMKPVEVPLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFK1</accession>
    <name>A0A392TFK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010572067">
        <property type="protein sequence ID" value="MCI59919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5429" checksum="9E460D2CBF9186C3" modified="2018-12-05" version="1" fragment="single">KVLGENDGIVLPGQLSSTSCCSGTLGPRGEERYDLFFCLVAQSSRARVIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THD3</accession>
    <name>A0A392THD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010573754">
        <property type="protein sequence ID" value="MCI60014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5314" checksum="119B7B130E72A31D" modified="2018-12-05" version="1" fragment="single">MEEEEVIIKDPKMQGKTRAEMGLNEFTDNGKKISEFKSNIYYRQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN62</accession>
    <name>A0A392TN62_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010617486">
        <property type="protein sequence ID" value="MCI62358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN62"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="4192" checksum="37F757E89AD85EB8" modified="2018-12-05" version="1" fragment="single">RRASRPAELGEHIFALPFARRAGLAVPRAGTILRVDFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPX7</accession>
    <name>A0A392TPX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010628460">
        <property type="protein sequence ID" value="MCI62958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7361" checksum="2B29EA52FEB639EA" modified="2018-12-05" version="1" fragment="single">MRRAKKTTAPFQMESSSLFPLARTLSRGVKIGAGLPELVRKQLKACLKENADLFAWSAAEMPGLDPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUL1</accession>
    <name>A0A392TUL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010654698">
        <property type="protein sequence ID" value="MCI64384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6692" checksum="3CF435334FF2C8E0" modified="2018-12-05" version="1" fragment="single">AEEERLATSILIKISIKASSRIKDIVIKEASRSKAASPINKASPTNKITLIKVGGRGRYRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TUU8</accession>
    <name>A0A392TUU8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010666306">
        <property type="protein sequence ID" value="MCI64933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TUU8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6194" checksum="FC7ED960CE870C8A" modified="2018-12-05" version="1">MPAARSAATRGQAARSASRAARSAGRSPVRAENAFLTQKCLFEFENDLFNSKKSYQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TX10</accession>
    <name>A0A392TX10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010680170">
        <property type="protein sequence ID" value="MCI65683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TX10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI65683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="10185" checksum="BAC609722B12FBB2" modified="2018-12-05" version="1" fragment="single">SLLHNLDVNSHFWLPNVYYNTQGSLYSEAMTYRQQFPPPPFYPRFPSPEAWTEYRRADQIEYEAIMNRNEAVFYEQYEAHMKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0C2</accession>
    <name>A0A392U0C2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010704698">
        <property type="protein sequence ID" value="MCI66893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0C2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="38" mass="3963" checksum="3E4A75FED50BE23A" modified="2018-12-05" version="1" fragment="single">MVVKVSKWWSVVVKVVIDGGRIGVVIIAVVGGGNIGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U0Z1</accession>
    <name>A0A392U0Z1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010707170">
        <property type="protein sequence ID" value="MCI67029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U0Z1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI67029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5311" checksum="5B06537C32FF9002" modified="2018-12-05" version="1" fragment="single">MKKEEVITSEKQKEPAAEKEEVVVAEVGKKKKDKKRKSAGIKIDEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U2H2</accession>
    <name>A0A392U2H2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010691483">
        <property type="protein sequence ID" value="MCI66235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U2H2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI66235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7801" checksum="D34AEBF3B4336FAB" modified="2018-12-05" version="1" fragment="single">PKRVFQLLKSDCIQRFGKDFCYLLLSIVHNFVFHKFSDEVMTDVNVVGSTVLNRILRDVDRTNIVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U628</accession>
    <name>A0A392U628_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010727916">
        <property type="protein sequence ID" value="MCI67980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U628"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI67980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9042" checksum="2BFE7AB695BB5BC2" modified="2018-12-05" version="1" fragment="single">TDPKLDWVGPEPRGIASVITPTAGGTYTIVEDTGEGQEQNWDVYCPTAGKHVYSEFSDDGFTMYEFAFKELGFRLPFSDLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U663</accession>
    <name>A0A392U663_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sulfate transporter</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010733741">
        <property type="protein sequence ID" value="MCI68277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U663"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI68277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9060" checksum="7109E3FEBF28EAD1" modified="2018-12-05" version="1" fragment="single">DVVKDTDRRVFMRNYRTKTDDMKWAQNGIVATVINGEAVPVVHNRITDAGFDDLVLIPMGAHKVFVRSSVGDDAMAIVNSAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U7Z4</accession>
    <name>A0A392U7Z4_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010737628">
        <property type="protein sequence ID" value="MCI68506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U7Z4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="24"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI68506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6748" checksum="DBCBBC02B1FB0D6C" modified="2018-12-05" version="1" fragment="single">MKASQSHQKSYADKRRKMWNFKKGDHVFLRVTSTTGMGRALKSKKLTSRFIGPYQISK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGK1</accession>
    <name>A0A392UGK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010784256">
        <property type="protein sequence ID" value="MCI70855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7046" checksum="2C0DD18542232804" modified="2018-12-05" version="1" fragment="single">RIVILPSLGSPKLMLTTLTLANDESWLNSSPPLARVPLFLVALALLAFFYVYVPWLGEKDMNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UII7</accession>
    <name>A0A392UII7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010838475">
        <property type="protein sequence ID" value="MCI73439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UII7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5721" checksum="E4D78EAAE007B5F3" modified="2018-12-05" version="1" fragment="single">MGHVRKTDIGCEGIIRGSDGEWFSSFAKRIVHGNAYIAELWGVFEGLHMLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIK1</accession>
    <name>A0A392UIK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010814778">
        <property type="protein sequence ID" value="MCI72286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI72286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3360" checksum="31157C168A7AA5B2" modified="2018-12-05" version="1" fragment="single">AMAQEAVSRTADRVAQEARRGGEDELRLEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ULA7</accession>
    <name>A0A392ULA7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010832495">
        <property type="protein sequence ID" value="MCI73160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ULA7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="43"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="62"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI73160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="79" mass="8778" checksum="3E62471558469B81" modified="2018-12-05" version="1" fragment="single">KAKSSYYKAMNDRKGKGQDRGKPYDIVERGNGNGRKKQGNGQCYKCGARGHMSYDCPLKDDKCFNCGKLGHKAEVCRAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UME3</accession>
    <name>A0A392UME3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010842054">
        <property type="protein sequence ID" value="MCI73596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UME3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CCHC-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4734" checksum="4A5C4623EFCE86EE" modified="2018-12-05" version="1" fragment="single">MKEVVCFNCKEAGHKSNVCKKPRVAGGKVFALDGGDVKADNLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UNX6</accession>
    <name>A0A392UNX6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Strictosidine synthase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010878991">
        <property type="protein sequence ID" value="MCI75281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UNX6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10426:SF69">
        <property type="entry name" value="PROTEIN STRICTOSIDINE SYNTHASE-LIKE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10426">
        <property type="entry name" value="STRICTOSIDINE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63829">
        <property type="entry name" value="Calcium-dependent phosphotriesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6720" checksum="4A741A1BCE51C017" modified="2018-12-05" version="1" fragment="single">NGDLYIADAYLGLKVVGPEGGLATQVVTEAEGQPFYFTNDIDISEDEDVIYFTDSSTVYHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUC7</accession>
    <name>A0A392UUC7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010881915">
        <property type="protein sequence ID" value="MCI75395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUC7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5994" checksum="35FB4A5D43546744" modified="2018-12-05" version="1" fragment="single">MENDFFIFPSDVSAKVEALKAKFGDVVDRLSQIIQKKVEGRGMEAVKKMMECV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWC8</accession>
    <name>A0A392UWC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010970779">
        <property type="protein sequence ID" value="MCI79299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5262" checksum="54484F1871A77E90" modified="2018-12-05" version="1" fragment="single">VQVEFVGQILVVVHVVVVLVGFQIVVKVQKMVYSHERKFVQLRGLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V078</accession>
    <name>A0A392V078_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011021071">
        <property type="protein sequence ID" value="MCI81527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V078"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8173" checksum="D84C9951FAA1EC1B" modified="2018-12-05" version="1" fragment="single">KRSEKTSGEQEPKKKEVKKEAVASSEKKKEDTSGKEKVVEKQAVEEGKKDKKMKSSGVKIDEGRSKKKHDKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2L1</accession>
    <name>A0A392V2L1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011013056">
        <property type="protein sequence ID" value="MCI81195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2L1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6906" checksum="25BB3953989598A6" modified="2018-12-05" version="1" fragment="single">MSAGGQRYEKTAGQWTLRSDAQPAIQRPAGTPANSDEAETGTHEDVEIPPFLNRKRASGSPNPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAQ1</accession>
    <name>A0A392VAQ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093024">
        <property type="protein sequence ID" value="MCI84522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAQ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF45">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7009" checksum="1460D11806F2BE20" modified="2018-12-05" version="1" fragment="single">MEEKSKVGALPVVCEFPDVFPDDISDLPPEREVEFAIDVVPDTSPISMAPYRMSAAELEKLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VD28</accession>
    <name>A0A392VD28_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011097542">
        <property type="protein sequence ID" value="MCI84715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VD28"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="16"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7751" checksum="900EB6E85A51D477" modified="2018-12-05" version="1" fragment="single">AGGRPKRRRVARQQPQPEPQGDPEPVAQPQPEHVHVAEPQPDHVHVTEEDEGEQLGEADFQEDDDTVQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VEM9</accession>
    <name>A0A392VEM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011126925">
        <property type="protein sequence ID" value="MCI85922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VEM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4544" checksum="E5AA26E74DD33878" modified="2018-12-05" version="1" fragment="single">KWDSIAMDFVSGLPKTSKGHAGRGLCGTDRETAWNSVKYCIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VPG0</accession>
    <name>A0A392VPG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011216069">
        <property type="protein sequence ID" value="MCI89299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VPG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6920" checksum="682F29682466B8D9" modified="2018-12-05" version="1" fragment="single">DLLEEDFVKAEEDEKRRQEEEKKKKQEEELRILSEIESSGKIVENKGKAVVVDHDPLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VRT8</accession>
    <name>A0A392VRT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011237211">
        <property type="protein sequence ID" value="MCI90182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VRT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="2982" checksum="DF6996AAFF7951BE" modified="2018-12-05" version="1" fragment="single">LLRNAQMHAAQRAVHAVKGAGPSGVGAARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VTP9</accession>
    <name>A0A392VTP9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011281850">
        <property type="protein sequence ID" value="MCI91768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VTP9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6828" checksum="D9D9993AF6451A69" modified="2018-12-05" version="1" fragment="single">MLRFETDELMDQADDFSEFVKELNDYSRRLDKKESIFQGRVLRLQKGLTADAPFVNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VU81</accession>
    <name>A0A392VU81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011273538">
        <property type="protein sequence ID" value="MCI91487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VU81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7140" checksum="223E4A5542497D33" modified="2018-12-05" version="1" fragment="single">IILSDSDGTNEDWREFLRTHKFHESHPNASSSDEDDGMIMVEPKRKVFNPSSDVGSRPKPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W6U9</accession>
    <name>A0A392W6U9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011405059">
        <property type="protein sequence ID" value="MCI96067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W6U9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5294" checksum="EB5EF3C263ABB4A6" modified="2018-12-05" version="1" fragment="single">ASSSSTTPTTPGVFKSTSNAVAFQSLPVKSVLTEPWTAAESTKSHLEKEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WAC8</accession>
    <name>A0A392WAC8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011440671">
        <property type="protein sequence ID" value="MCI97347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WAC8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7494" checksum="1C098AF70AD2EE55" modified="2018-12-05" version="1" fragment="single">EEPKKKESKKVAETTSKVIEEKVANEKVVKKEAIIAEKAKKKVLKRKAPGIKIDEGRTKRKHDKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WFH4</accession>
    <name>A0A392WFH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011467992">
        <property type="protein sequence ID" value="MCI98249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WFH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="35"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI98249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7311" checksum="E011940079393517" modified="2018-12-05" version="1" fragment="single">TKVSASERRQKAAENLLKKRTRKCPAQDEADETAPAEHHEVEPDQADHHHADVTEEGHSGDDGDDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N501</accession>
    <name>A0A392N501_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028398">
        <property type="protein sequence ID" value="MCH94877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N501"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="entry name" value="PPM-type phosphatase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47992">
        <property type="entry name" value="PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00481">
        <property type="entry name" value="PP2C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="PP2C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="179"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="204" mass="23032" checksum="2E6636EED0FD9C2A" modified="2018-12-05" version="1" fragment="single">VSNEAIREELQARNPYDSEVVMYCEETWNKGNIKVNRSIGYAHFKDHPINSLRRLPEIEQITQVLVSAKPELHSRKIRKGDRFLILASHGFWNFMTNENAANIVNRNPRDEIAKRLLSAALEKATEKRGAKGVYDDMIIIVLFFSEGLSQRKEEDTPKTVVLHEGPSYLSNIIMASGKSDQSRLSPTSSIPNPRASVPTLTQVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N6X3</accession>
    <name>A0A392N6X3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NBS-containing resistance-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026860">
        <property type="protein sequence ID" value="MCH94244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N6X3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.10.10">
        <property type="entry name" value="Ribonuclease Inhibitor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032675">
        <property type="entry name" value="LRR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055414">
        <property type="entry name" value="LRR_R13L4/SHOC2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186">
        <property type="entry name" value="LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47186:SF29">
        <property type="entry name" value="NB-ARC DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23598">
        <property type="entry name" value="LRR_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52047">
        <property type="entry name" value="RNI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Disease resistance R13L4/SHOC-2-like LRR" evidence="2">
        <location>
            <begin position="65"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH94244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="256" mass="29021" checksum="0CFFEC9123F4E6AA" modified="2018-12-05" version="1" fragment="single">MKNLSFCHFVHEDDETVPVGITRRLSIAISSSKEFKFKGITNSHFRAIHGFGEGGELEPFISKLCSKSRILKVLDIQGTSLNQIPSNLGNIFHLRYINLRGTKVQTLPKSIGELHNLETFDLRETPVREIPGEINKLAKLRNLLAYHCNYEAKYSLLSFTTGVLMEKGIKNLTSLQNLCYVEVDHGGVDLIQEMKMLRQIRKLGLTCLRREHGNALSAAIVEMKHLENLNITTIDEDEIIDLNFTSSPPQLQRLHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NGX0</accession>
    <name>A0A392NGX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thermospermine synthase ACAULIS5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010039371">
        <property type="protein sequence ID" value="MCH99096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NGX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010487">
        <property type="term" value="F:thermospermine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006596">
        <property type="term" value="P:polyamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43317">
        <property type="entry name" value="THERMOSPERMINE SYNTHASE ACAULIS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43317:SF1">
        <property type="entry name" value="THERMOSPERMINE SYNTHASE ACAULIS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="10935" checksum="3D63CF7BF4776025" modified="2018-12-05" version="1">MTSCFPFDADVVAYSTHVPSFADSWGWVMASDQPILIDAVEMDKRIKARIDGKLLYLDGVWFHSSTIMNKTVSKSLQNETHVYTEDNARFIPGHGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NIE2</accession>
    <name>A0A392NIE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription factor GAMYB-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040953">
        <property type="protein sequence ID" value="MCH99656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH99656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16327" checksum="226471BB9E0E49A0" modified="2018-12-05" version="1">MYETEWEDYADPVSPFGASSILNECPAVSANRNSLDEQPPVHTINGNIVKLEYVDQVWTPDSENQITSLLNFSRPDFLLASDWYEHYSGHDKNQSITDATXXXXXXXXXXXXXXXPAGTSNPSQVWEFGSLAWNNMPAVYQISDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NK15</accession>
    <name>A0A392NK15_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040257">
        <property type="protein sequence ID" value="MCH99428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NK15"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH99428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="19467" checksum="D3347DB612254743" modified="2018-12-05" version="1" fragment="single">MAKTKRNAPRTLSTPAEVQVEIQDPPSIEPTEAQNPTSIHDSEVQNPPSIEPTEAEIQDPPAVETTQVDDENPQPTCRRKKSNKYWPVDVIDKDGVVQETSLAAKDLFAKLRGRKVILEWNQFIQPIREAAGLLEQYLGELAANFENFPIWYKSWPDVPIDYKTKIWSDIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="23" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NM41</accession>
    <name>A0A392NM41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Eukaryotic translation initiation factor 4G-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic initiation factor 4G family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010042468">
        <property type="protein sequence ID" value="MCI00189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NM41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016281">
        <property type="term" value="C:eukaryotic translation initiation factor 4F complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="1.25.40.180:FF:000034">
        <property type="entry name" value="Eukaryotic translation initiation factor 4G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003891">
        <property type="entry name" value="Initiation_fac_eIF4g_MI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23253">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23253:SF9">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02847">
        <property type="entry name" value="MA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00544">
        <property type="entry name" value="MA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51366">
        <property type="entry name" value="MI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="MI" evidence="5">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI00189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="171" mass="18735" checksum="08CEA845E95D902F" modified="2018-12-05" version="1" fragment="single">ARDVNEVVLCVKDLNSPSFHPSMVSVWVTDSFERKDTERDLLGKLLIDLVKSHGGTLSQAQLVEGFESVLSTLEDGVTDAPKAPEFLGRIFAKAITEHVVSLEEIGRLIHNGGESLLQIGLAADVLGSTLEVIQTEKGDAFLTEIQTSSNLQLQTFQPPEPIKPRKLEKFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NNR3</accession>
    <name>A0A392NNR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010046271">
        <property type="protein sequence ID" value="MCI01491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01647">
        <property type="entry name" value="RT_LTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.10.10">
        <property type="entry name" value="HIV Type 1 Reverse Transcriptase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="26"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI01491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="324" mass="36605" checksum="99A8AF39C08974F8" modified="2018-12-05" version="1" fragment="single">VPINVRPYRYPHAQKLEIEAQVTKLLANGWITPSNSPFSSPVLLLKKKDGTWRMCVDYRALNAITIKDRFPLPTVDELLDELGGAQVFSKLDLTSGFHQIRXXXXXXXXXXXXXHDGHYEYKVMPFGLCNAPATFQATMNDIFRPFLRRFVIVFFDDILIYSLDENSHLIHLAKVFAILSEHQFFIKPSKCSFAQQQIDYLGHVVSKGTVAPDPQKIQAVLDWPIPKNLKALRGFLGLSGYYRKFIKGYASIALPLTNLLRKDAFKWSXXXXXSFNQLKQALVTAPVLSLPDFKEQFIVQTDASGTAMGAVLIQQGHPIAFFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTI8</accession>
    <name>A0A392NTI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MORN repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051315">
        <property type="protein sequence ID" value="MCI03151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI03151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="9612" checksum="68057E5CA4975EDD" modified="2018-12-05" version="1" fragment="single">VREKRGPYNDPQHAYLYEGEDVWMAPGFINQFYEVPDYWKTYAQEVDQEREMWLNSFYKSPLRIPMPAELEYWWNKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTW6</accession>
    <name>A0A392NTW6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc ion binding/nucleic acid binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051682">
        <property type="protein sequence ID" value="MCI03281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTW6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040256">
        <property type="entry name" value="At4g02000-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286:SF99">
        <property type="entry name" value="DUF4283 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31286">
        <property type="entry name" value="GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="3">
        <location>
            <begin position="49"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="105"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="219"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI03281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="277" mass="30388" checksum="967B2B9313948E94" modified="2018-12-05" version="1" fragment="single">KVDKNTLTHERGKYARLCVQVNLTKPLLGMFTIKGRKYNVEYEGLHMLCLTCGKFGHYKEGCPERGKTTIESHEGGETVKGKASQGHELYDGNIDGPWMVVQKQKRGKKATPARNNTVVDGKNSGGPGRVIAGSKKSTTEPEITGSRFVLLSEEIPVIIEEDMVREETINAEENNEKNIRNVVTVQADNVHANKAKRGNNGMAAKKGDGTQERVSKDFKLATRGGGQFKSKGGASHKKGNDSFLELVGQTIVDQSKREDTLHIFSSTPTIISPPLHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NYQ9</accession>
    <name>A0A392NYQ9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010055065">
        <property type="protein sequence ID" value="MCI04339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NYQ9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044277">
        <property type="entry name" value="GIP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46775:SF1">
        <property type="entry name" value="FLOCCULATION PROTEIN (DUF1296)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI04339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="162" mass="17471" checksum="7869C65905DA30BA" modified="2018-12-05" version="1" fragment="single">NQNASVTSVVGGYSDNPQPPSTTVPENFALSTDVDVSTSTIQEDNESKHGTMPSEGNDYSVVHTSPNYNLGFMSPMLETQSAQIDNSESQARDMSRLQNFVVHQPFDPNNYYAQYYRPGADSDGRLSPLASSGVTTKYNGGAAVLPTPSSQSLQLQEVCIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P2C5</accession>
    <name>A0A392P2C5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060126">
        <property type="protein sequence ID" value="MCI05902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P2C5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10417" checksum="22C7842BB5F1B80F" modified="2018-12-05" version="1" fragment="single">MPTAQTSLGCSALFCLKLFTRLDSSTDSDTFCSKELGAQTLRVDGSGRLSCYWVDFLVTLVLVLSVPLIFWISHDMAFDGSELLWIFNMTLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P4A0</accession>
    <name>A0A392P4A0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010061352">
        <property type="protein sequence ID" value="MCI06280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P4A0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI06280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4678" checksum="BEB2CBAB7E08D02B" modified="2018-12-05" version="1" fragment="single">ESWITCANERGGVLVGFAGMVETMHGQEHILAKRHPTQNLRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAS4</accession>
    <name>A0A392PAS4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein DJ-1-like D-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C56 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067395">
        <property type="protein sequence ID" value="MCI07995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAS4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006286">
        <property type="entry name" value="C56_PfpI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42733">
        <property type="entry name" value="DJ-1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42733:SF2">
        <property type="entry name" value="DJ-1_THIJ_PFPI FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1/PfpI" evidence="2">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16394" checksum="CF312480D7BD3B44" modified="2018-12-05" version="1" fragment="single">YDGLWLPGGRAPEYLAHIPSVVELVAKFVNSGKEIACICHGHLILAAAGVVEGRTCTAYPPVKPVLIAAGAHWVEPDTMSTTVVDGNLITAPTYEGHPELLRHFVKALGGKISGSDKKILFICGVTCYYLYTNIYVAPTLKIEGVSECPTHMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PC03</accession>
    <name>A0A392PC03_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010072070">
        <property type="protein sequence ID" value="MCI09282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PC03"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI09282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10932" checksum="2C3CDBAB2FBD896F" modified="2018-12-05" version="1">MGIDVDLWDIVEENIQFQNMHADGVISFVNRKALTNEEKELYKKHHKAKSILVNSISYSKYLKISDKSSAKSIWDSLCSTYGKKIHGAALEELSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFD8</accession>
    <name>A0A392PFD8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076320">
        <property type="protein sequence ID" value="MCI10462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFD8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF22">
        <property type="entry name" value="TRANSPOSON TY3-I GAG POLYPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="2">
        <location>
            <begin position="52"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI10462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="259" mass="29530" checksum="C527F8C887218447" modified="2018-12-05" version="1" fragment="single">MPEHTSQATPHKVPHLKLDVPRFEGTDPHGWIFKISQFFTYHHTPEEERITVASFYLDGPALGWYQWMYNNGQICSWQQFLNALELRFAPTAYDDPRGKLFKLQQTSSVTEYLSEFETLANRIVGLSPSDLLSCFVSGLKTEVRREVLAQQPRDLSQAAGLARLQEEKIQDLLKLTRAKPTSPSWSGSSATRSSPRATPEVTNNKPNSPLLPAPPIKTRFRQLSAAELIERREKGLCFNCDEKFSRNHRCKARFLLLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFY8</accession>
    <name>A0A392PFY8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010076051">
        <property type="protein sequence ID" value="MCI10389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFY8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6850" checksum="2D488D781AC2DB64" modified="2018-12-05" version="1" fragment="single">VFYLMHGLVGNQQHAVLQQQATTVQQWQPPDQDPLKCNVDASFYGSIGETDWIGGGAFEIIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJ88</accession>
    <name>A0A392PJ88_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Callose synthase 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082876">
        <property type="protein sequence ID" value="MCI12138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJ88"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI12138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6124" checksum="6732E7EED99F20A0" modified="2018-12-05" version="1" fragment="single">MTRYPSLRVAYIDEVEEPIKNSKKKINKVYYSCLVKAMPKSSSSSEPEQNLDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PL84</accession>
    <name>A0A392PL84_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010084683">
        <property type="protein sequence ID" value="MCI12564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PL84"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2846" checksum="904C10CA34BF5439" modified="2018-12-05" version="1" fragment="single">SLSRSESANSSVRSERSQSVNSGDRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PUI8</accession>
    <name>A0A392PUI8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DUF674 family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092981">
        <property type="protein sequence ID" value="MCI14585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PUI8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3535" checksum="EC7051D6A70597B5" modified="2018-12-05" version="1">MKECLSILNAALTSTSALTNGLSHLLSEVMEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PVS0</accession>
    <name>A0A392PVS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Eukaryotic translation initiation factor 2A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010094755">
        <property type="protein sequence ID" value="MCI15035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PVS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4501" checksum="4C664B1941E7C549" modified="2018-12-05" version="1" fragment="single">MFDKLYQADWKPESPSNFGDITELIKSLDSVKLEDKKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWC6</accession>
    <name>A0A392PWC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Choline-phosphate cytidylyltransferase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098898">
        <property type="protein sequence ID" value="MCI15987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004105">
        <property type="term" value="F:choline-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031210">
        <property type="term" value="F:phosphatidylcholine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045049">
        <property type="entry name" value="Pcy1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10739:SF64">
        <property type="entry name" value="CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10739">
        <property type="entry name" value="CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI15987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11355" checksum="4C0E28475194C24C" modified="2018-12-05" version="1">MHRNEWVENADRMVAGFLEMFEEGCHKMGTAICDRIQESLRGQQSNDDSVLLQNGKDDDDEEYYDDEEDSDEEYFEEYFDNNELNPQINAKDMNKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PZF3</accession>
    <name>A0A392PZF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010102693">
        <property type="protein sequence ID" value="MCI16840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PZF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447">
        <property type="entry name" value="OS03G0856100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47447:SF21">
        <property type="entry name" value="PENTACOTRIPEPTIDE-REPEAT REGION OF PRORP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12854">
        <property type="entry name" value="PPR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="29"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="64"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="99"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI16840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="185" mass="21596" checksum="064B40EA18F616F7" modified="2018-12-05" version="1">MISIYGRKQVVSKANEILDFIYENGFTPSLTTYNSLMYMYSRSEKFQKSEEILRMILKKGMKPDKISYNTVIYAYCRNGRMKEAVRIFSEMKDSALVPNVVTYNTFVATYAADSLFVEAIDVIRYMIKQGCKPDQNTYNSIVDWYCKHNRQEEANSFVKNLGNIDPHVSKEEKSRLLKRMARGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q8T1</accession>
    <name>A0A392Q8T1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010121780">
        <property type="protein sequence ID" value="MCI20803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q8T1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3325" checksum="574FE1C98A4C6105" modified="2018-12-05" version="1" fragment="single">SMLNLTCGCDYVDIVDGTPREIGNRKVKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGG1</accession>
    <name>A0A392QGG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide repeat protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010133764">
        <property type="protein sequence ID" value="MCI23029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI23029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7631" checksum="7608CA1DA51528C5" modified="2018-12-05" version="1" fragment="single">NDASDGFETASDTDLDSDVDANDGSAIKQEEQDNLQQQHQQSDQQQEQGDPQRIISSDDAPINNEELIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-03-27" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNU0</accession>
    <name>A0A392QNU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. PCMP-H subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010148259">
        <property type="protein sequence ID" value="MCI25619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032867">
        <property type="entry name" value="DYW_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14432">
        <property type="entry name" value="DYW_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DYW" evidence="2">
        <location>
            <begin position="42"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI25619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="15666" checksum="3B89AC0F7DF56D81" modified="2018-12-05" version="1" fragment="single">ACSWVEIENSVHVFVANDFSHPQKDKVYEMWENLNQKIKEIGYVPDTSHVHLYVDQQEKELNLQYHSEKLALAFALLNTSPGSTIRIMKNIRVCGDCHSAIKYVSLVVXREIIVRDTNRFHHFRNGSCSCRDYW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QQ75</accession>
    <name>A0A392QQ75_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010149496">
        <property type="protein sequence ID" value="MCI25800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QQ75"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI25800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7448" checksum="87A22C90E1B4938D" modified="2018-12-05" version="1" fragment="single">MTDAVGKEASKKVVTEPTKHYVPVQSKDKVDEIINVEGSTSKLYSQVNNEQQRIEADKTLEEEINK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QV72</accession>
    <name>A0A392QV72_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PB1-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010161091">
        <property type="protein sequence ID" value="MCI27734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QV72"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058594">
        <property type="entry name" value="PB1-like_dom_pln"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26130">
        <property type="entry name" value="PB1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PB1-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF26130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9209" checksum="5C5615ECBB784CB8" modified="2018-12-05" version="1">MSDVTEVVLYHGGSLVRNVEGLMKYKGGKNIVLKELEADKLNVRGMVLEDHLYQRQLMGYGFHAVMAWRSHAVGLIYIPFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QW41</accession>
    <name>A0A392QW41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010164336">
        <property type="protein sequence ID" value="MCI28229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QW41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI28229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6637" checksum="1D14C076DF5E2F11" modified="2018-12-05" version="1" fragment="single">MLETKPFSSNKEQEDKLICCEECASNYEKEAQFLKPEQKKTLPFWLQSHGTEEQKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QZE2</accession>
    <name>A0A392QZE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010174199">
        <property type="protein sequence ID" value="MCI29678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="46"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="68"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="120"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI29678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="163" mass="17050" checksum="D3962349FDB7E1AA" modified="2018-12-05" version="1" fragment="single">QTTVSSPKVQSSDIVTHAVPLTTVPPQTSTKTKAKSSVKKEKLSKVSKTTSPSASSKKSKSKSRKSKSXXXXXXXXXXXDLYLSENPFKSSNVESNVTASGSSKSVADVDASGNASETLGLEKPRSDENLGKSDLNPPVDDITVGEASTKAIDDSTVDPIKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R039</accession>
    <name>A0A392R039_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010173736">
        <property type="protein sequence ID" value="MCI29609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R039"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI29609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3438" checksum="27CA963DD461AFA1" modified="2018-12-05" version="1" fragment="single">MNGTSKSGDRRGELPPVLDWSLRVLNDLPLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R290</accession>
    <name>A0A392R290_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010179025">
        <property type="protein sequence ID" value="MCI30367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R290"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="152" mass="17477" checksum="1E69381B2CA09E19" modified="2018-12-05" version="1" fragment="single">MRQLQASQADLVENMNLFQATQGSLMGHMQELQAHQNTMGVDVRQLQATQNLMSGNVQRIATTQDAIAQNHQEMLNHMRFVQQAKNHHETQMDSIHGHLNSLQNQYQTQINSIHGHLNSLQNQHQTQMESIHEHLNSLQMEVMTQVRPGRQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4F4</accession>
    <name>A0A392R4F4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipid-transporting ATPase 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010187422">
        <property type="protein sequence ID" value="MCI31488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4F4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4207" checksum="BC6BF4CFF803A3A4" modified="2018-12-05" version="1" fragment="single">MDVIRWTWITHASIWGSVIATFICVTIIDAIPSLRGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R4T4</accession>
    <name>A0A392R4T4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Proliferation-associated protein 2G4-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010182350">
        <property type="protein sequence ID" value="MCI30810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R4T4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3118" checksum="108BA44492CC12A7" modified="2018-12-05" version="1" fragment="single">ALKLVISECKPKAKIVDICEKGDAFIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R690</accession>
    <name>A0A392R690_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Guanylate-binding family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010192879">
        <property type="protein sequence ID" value="MCI32123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R690"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036543">
        <property type="entry name" value="Guanylate-bd_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48340">
        <property type="entry name" value="Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4011" checksum="D5C856287CD2DF4F" modified="2018-12-05" version="1" fragment="single">SVEEAECRRAYDSATEVYMASFDRSKPPEEVSNLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R7Z0</accession>
    <name>A0A392R7Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartyl-tRNA synthetase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010188967">
        <property type="protein sequence ID" value="MCI31665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R7Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13186" checksum="87111019B51D5C68" modified="2018-12-05" version="1" fragment="single">MSRPSKTLNTNPSANSEYSSRKAPISNGDAATFEWWKDRIDSHITGIDDELWDIVEEGVTFENMSENGRLFIANKKLLSTADKKTYMRHHKVKDINVGAIKHEEYVRIGDKTSAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R839</accession>
    <name>A0A392R839_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon-derived protein PEG10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010198421">
        <property type="protein sequence ID" value="MCI32753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R839"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="37"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI32753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="132" mass="15034" checksum="D46FF6C22768DECF" modified="2018-12-05" version="1" fragment="single">MKLDVPRFNGDDALGWIFKISQFFEYHDTPESERLTVASFYMEGPALGWFQWMSRNGQLTSWSALLHALETRFAPSQYDDPKGALFKLTQKGTVNDYLTEFESLANRIVGLPSSFLLSCFISGLAPDVRREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RH52</accession>
    <name>A0A392RH52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010224849">
        <property type="protein sequence ID" value="MCI35579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RH52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="111" mass="12546" checksum="A909760CBC981C98" modified="2018-12-05" version="1">MSSVDLDSRYSKKENKEEKKLRKEKNESDEASKENYHPIPDGEFELIQFGEEPSRGVKIGTEPPDLARKQLKACLRENADLFSWHATEMSGLDPNVTCHQLTIDPAASDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RHP1</accession>
    <name>A0A392RHP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010226538">
        <property type="protein sequence ID" value="MCI35737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RHP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="5"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI35737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="9239" checksum="682215F80D0A9489" modified="2018-12-05" version="1" fragment="single">LLEQVKELKEKVAELEEKMKSAEVTLIAEEEREADPAGLYAEFSRADLIQLLNPNVDFKLDGLDEEKEVRDGRIATPPKGDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RIZ1</accession>
    <name>A0A392RIZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010234931">
        <property type="protein sequence ID" value="MCI36558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RIZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9970" checksum="30DD98A583885B5E" modified="2018-12-05" version="1">MDKRSSRLQKQADYEFDKHKQSKKPCTRDLDKKDVKTDLKAPQEDVKTDLKAPQEDVKTDPKAPMTDPKDNEPIIDDFSGVVHCPIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJ94</accession>
    <name>A0A392RJ94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010232701">
        <property type="protein sequence ID" value="MCI36319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJ94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6356" checksum="F9F623810B9C1260" modified="2018-12-05" version="1" fragment="single">VASASGGARTPSWSYWGSQGTIKIGSTPEATPMTLDTLATSKHVDGLLFALVSYCASDFVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RL31</accession>
    <name>A0A392RL31_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010243516">
        <property type="protein sequence ID" value="MCI37341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RL31"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7583" checksum="1AB06B2267F5269E" modified="2018-12-05" version="1" fragment="single">MLPLTMQHKLPPQGLQLRPGLTLYGVGFLVLRLHLFQGKNWGLKERSEPVQRKEDCSLWRNRLGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTZ5</accession>
    <name>A0A392RTZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010265425">
        <property type="protein sequence ID" value="MCI39260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="41"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="5646" checksum="B20F82D924DD7465" modified="2018-12-05" version="1" fragment="single">PPPPASSNSEAPPSSSQQPPPPSSSNSDAPLFSSDAPPPSHSDAPPSSSDVPPPTKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1K0</accession>
    <name>A0A392S1K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295879">
        <property type="protein sequence ID" value="MCI41755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7652" checksum="C31A617E65767012" modified="2018-12-05" version="1" fragment="single">YAGLSRAMLVSKIFELNDTMLETASSQFHNVVAQIRALNACMELNIEGLDEEKEVRDSQVVPPRDEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4K9</accession>
    <name>A0A392S4K9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010322550">
        <property type="protein sequence ID" value="MCI43831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4K9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8712" checksum="568384D6EDC3C15F" modified="2018-12-05" version="1" fragment="single">MPVTPFVMDSLFETELNTEPDGTVRRDEEGVEITRSVSCFLLCWSKKHFSESTDYYLTKEGTMTEEDLAGLERLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S6S8</accession>
    <name>A0A392S6S8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010319675">
        <property type="protein sequence ID" value="MCI43595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S6S8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI43595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="112" mass="12949" checksum="10FCA305C7BEC8B8" modified="2018-12-05" version="1" fragment="single">SRSPRPQRRNERPPSPRRHETSPRNSPRHGDRPLRHSPRRNSPRRDSPPPRRHRRHSSAEEGRHGGPLSRRIMDVPLPVGLEKPPSMDIYDGSTDLDDHIENIEAVLEYRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S712</accession>
    <name>A0A392S712_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010320732">
        <property type="protein sequence ID" value="MCI43676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S712"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="1986" checksum="6FDB31A457786C8B" modified="2018-12-05" version="1" fragment="single">MTGVRRQPKVVNSSIVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SEU1</accession>
    <name>A0A392SEU1_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010357210">
        <property type="protein sequence ID" value="MCI46415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SEU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46148:SF57">
        <property type="entry name" value="OS12G0499874 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI46415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11163" checksum="FEC2B7AD88617AEA" modified="2018-12-05" version="1" fragment="single">VAYRLALPPSMSGMHDVFHVSQLRKFIPDSSVTMDLNSIELEPNMTFQPVQFVDRDMRNLRNRSIPMVEVVWEGSPDGKATWELKSKMLKHYSHLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SFY7</accession>
    <name>A0A392SFY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010377214">
        <property type="protein sequence ID" value="MCI47798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SFY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5181" checksum="0A48C426999C6A3E" modified="2018-12-05" version="1" fragment="single">GVVEEKEEGVLLRGNDAEEDAFEEVLEANVPWWHEMQSIVAVGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHY6</accession>
    <name>A0A392SHY6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010387149">
        <property type="protein sequence ID" value="MCI48481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHY6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2577" checksum="EAD689FF09E92847" modified="2018-12-05" version="1" fragment="single">VCCILFGFLNGGSWCGHDAVDYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIA8</accession>
    <name>A0A392SIA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010375177">
        <property type="protein sequence ID" value="MCI47660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="81"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10816" checksum="8BBE01DD022AAF1E" modified="2018-12-05" version="1" fragment="single">VEEEKEEKKDEALTTVVMEKNQVNEQNFVAEVQSAKDYEDSFVKQLELTMNHTDAFVSHKDQIVADVLKDLKTSSKKDDDPIVEEEIVDEDDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SIE0</accession>
    <name>A0A392SIE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010386285">
        <property type="protein sequence ID" value="MCI48409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SIE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI48409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2990" checksum="B02B062B2578EDF2" modified="2018-12-05" version="1" fragment="single">FGQWGAIASWWFWAEVSFHLLHSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SNJ3</accession>
    <name>A0A392SNJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010416893">
        <property type="protein sequence ID" value="MCI50451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SNJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4101" checksum="754CC58C7389C213" modified="2018-12-05" version="1" fragment="single">AGGFAPSAIRALGLLDITGCCAQRKCLGAGRARGPERLVAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392STW7</accession>
    <name>A0A392STW7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Clustered mitochondria protein-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010438640">
        <property type="protein sequence ID" value="MCI51867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392STW7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6874" checksum="4642D9BC201486BA" modified="2018-12-05" version="1" fragment="single">EAAVQPDVPANDHVEAVPESVNTDAVEVAAVGEATSVSSEVKENETANEVNQPNQGESGSSTLFCFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SW47</accession>
    <name>A0A392SW47_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010457603">
        <property type="protein sequence ID" value="MCI53088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SW47"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="27" mass="2934" checksum="60C564F46FB7314E" modified="2018-12-05" version="1" fragment="single">MSSDSDKRLLSKGYSVAAVDKAAQYSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZ58</accession>
    <name>A0A392SZ58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010474820">
        <property type="protein sequence ID" value="MCI54141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZ58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3001" checksum="179FD20CBA63D2BD" modified="2018-12-05" version="1">MVKAKFEAEPGPGNCLSPGDTFPRQARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZA2</accession>
    <name>A0A392SZA2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Beta-amylase</fullName>
            <ecNumber evidence="4">3.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Hydrolysis of (1-&gt;4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.</text>
            <dbReference type="EC" id="3.2.1.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.2" evidence="4"/>
    <dbReference type="EMBL" id="LXQA010459424">
        <property type="protein sequence ID" value="MCI53190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZA2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016161">
        <property type="term" value="F:beta-amylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001554">
        <property type="entry name" value="Glyco_hydro_14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31352">
        <property type="entry name" value="BETA-AMYLASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31352:SF47">
        <property type="entry name" value="BETA-AMYLASE 7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01373">
        <property type="entry name" value="Glyco_hydro_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00750">
        <property type="entry name" value="BETAAMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI53190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8555" checksum="E9519129F181A964" modified="2018-12-05" version="1" fragment="single">LSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIVAMLKRNGVSLNIACVDLHTLNQHEGFPEPFADPERLVWQVSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SZC6</accession>
    <name>A0A392SZC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010465138">
        <property type="protein sequence ID" value="MCI53564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SZC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10785" checksum="2AC1A56ABC370564" modified="2018-12-05" version="1" fragment="single">KNKYALQQKLVVDLEVTEAKLTEVTQERDTLLATVQGLEDRVCVLEDKLKESEGRGVEDIVTEEERAVDRAGVYAGLSRAMLVSKIFELNDTMLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T483</accession>
    <name>A0A392T483_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010503502">
        <property type="protein sequence ID" value="MCI55898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T483"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4708" checksum="E5E81A1C8ED81E8C" modified="2018-12-05" version="1" fragment="single">MKMKRGTSKANTYEKKKKLEKRTSAPKQSKAQKKLKIKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7G2</accession>
    <name>A0A392T7G2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010522538">
        <property type="protein sequence ID" value="MCI57041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7G2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3133" checksum="73E0C47CA4132D34" modified="2018-12-05" version="1" fragment="single">CAARSLVAVVPVLVSVSCAARRLVLRHSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TB69</accession>
    <name>A0A392TB69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Retrotransposon protein putative Ty3-gypsy subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010545213">
        <property type="protein sequence ID" value="MCI58371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TB69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052160">
        <property type="entry name" value="Gypsy_RT_Integrase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041588">
        <property type="entry name" value="Integrase_H2C2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47266">
        <property type="entry name" value="ENDONUCLEASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17921">
        <property type="entry name" value="Integrase_H2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase zinc-binding" evidence="1">
        <location>
            <begin position="14"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI58371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="8213" checksum="45F3A72775BE9D09" modified="2018-12-05" version="1">MLLAYPPKFEWFSIHPGSTKMYQYLKKNFWWPNMKTEIAEFVARCIVCQRVKIEHQKSAGLLQPLEIPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TFN4</accession>
    <name>A0A392TFN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010555989">
        <property type="protein sequence ID" value="MCI59030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TFN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI59030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="6867" checksum="DFA7C88D18D837D3" modified="2018-12-05" version="1" fragment="single">GSGAKIIKSQQKSTLPNSALHPAQHHLRPAQSPEQRQENRTHNAPGSVPPASGAVTSNMQKMKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJ83</accession>
    <name>A0A392TJ83_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010592998">
        <property type="protein sequence ID" value="MCI61058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJ83"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="79"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9762" checksum="75457852FFC37054" modified="2018-12-05" version="1" fragment="single">DAAVFTLGHCNLITTLCRRNKVLEEGEDDGVLEPVKGLNYKYFHSRFSSRPVNNRGDNGGQEGNEEVGEDQGMQDVMEEIDRFDGGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJA8</accession>
    <name>A0A392TJA8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010592856">
        <property type="protein sequence ID" value="MCI61052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJA8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10413" checksum="0A4B624D99ABFD12" modified="2018-12-05" version="1" fragment="single">VDHVANEMVLALNALEEEFVKAEQEEKKRLEEEENRKREEEEKNRLWEVEKMRQGDKLLQLSLDTTPKAKGKEIEAEPHPLMLAMQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMZ2</accession>
    <name>A0A392TMZ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010610214">
        <property type="protein sequence ID" value="MCI61984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMZ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2927" checksum="0FCC9AD825F42134" modified="2018-12-05" version="1" fragment="single">MPPRWAPAVPRTEDDRVERMANSMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TNP6</accession>
    <name>A0A392TNP6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010625392">
        <property type="protein sequence ID" value="MCI62789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TNP6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017369028" evidence="1">
        <location>
            <begin position="24"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="6107" checksum="335F54B85962F4FA" modified="2018-12-05" version="1" fragment="single">DVNMVLRILNLMWLKINLMVVWSIEVLNVMEEAGPDDVPLDQAIDQNVLWSNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRC2</accession>
    <name>A0A392TRC2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010633162">
        <property type="protein sequence ID" value="MCI63224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRC2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI63224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9454" checksum="57CBD01D91D2C451" modified="2018-12-05" version="1" fragment="single">SSDVAVFTLGHCNLITALCRHNKVPEEGEDDGVLEPVKGFDVKYYHSRFKSGPVNNRVDNGGQGGQEEGGEDPGLQDMMEEIDRFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TRE6</accession>
    <name>A0A392TRE6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010625096">
        <property type="protein sequence ID" value="MCI62770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TRE6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9321" checksum="5413CFE746F46299" modified="2018-12-05" version="1" fragment="single">SALDQKGEEEVLSEAEIAELPGVTSDIHSLSRLNASISWQQSRSLWLKEGDANSKYFHSVLASRRRGNAISVIQADGISLEGVTPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSC6</accession>
    <name>A0A392TSC6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enzymatic polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010631618">
        <property type="protein sequence ID" value="MCI63130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSC6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13650">
        <property type="entry name" value="Asp_protease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI63130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5498" checksum="B48592AAA505A452" modified="2018-12-05" version="1" fragment="single">MDGFRTMKIEGKVEHVDVMVLIDSGASHNFISPQITTALGLNVSPITARSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTP4</accession>
    <name>A0A392TTP4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010652755">
        <property type="protein sequence ID" value="MCI64288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTP4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2698" checksum="845274CE48357F7B" modified="2018-12-05" version="1" fragment="single">TIFVLTFGMLSFVDAGLRSGLRSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TXE5</accession>
    <name>A0A392TXE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010682429">
        <property type="protein sequence ID" value="MCI65782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TXE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7258" checksum="19865F4DEE74319F" modified="2018-12-05" version="1">MAANQEYDQNHPQQQAQTGQDLTDNIMDLLDRDLNPMFFTPKDLHPREGSNHGAFSSFPSYLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U249</accession>
    <name>A0A392U249_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tf2-1-like SH3-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010703323">
        <property type="protein sequence ID" value="MCI66837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U249"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tf2-1-like SH3-like" evidence="1">
        <location>
            <begin position="24"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="7249" checksum="3130D478FAA72075" modified="2018-12-05" version="1" fragment="single">MKVSQDCQKSYADKRRRPLEFEAGEHVFLRVTPTTNVGRSLKAKKLTPKFIGPYQITERIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDD4</accession>
    <name>A0A392UDD4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010797793">
        <property type="protein sequence ID" value="MCI71523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDD4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017407025" evidence="1">
        <location>
            <begin position="18"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7041" checksum="050B3A6BFF407A1B" modified="2018-12-05" version="1" fragment="single">PVVLLVALFFLAGPIRASVVSPPVVASSPFLGTGMEMRAVSSGFFLFDPFEVGSSTTSYERGSDTAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UDH4</accession>
    <name>A0A392UDH4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010799120">
        <property type="protein sequence ID" value="MCI71579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UDH4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8824" checksum="70A90B12B1FD3925" modified="2018-12-05" version="1" fragment="single">MNGKEGIEEIGEVNEGCRVVVEEEEGWCGKREVEVEEEEEEEEGVIEGGGDVIEELEDQIVYNGLDVGCGGGYEEDVHHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UFP2</accession>
    <name>A0A392UFP2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010792431">
        <property type="protein sequence ID" value="MCI71236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UFP2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2871" checksum="22DCF548B3F6866C" modified="2018-12-05" version="1" fragment="single">MPTFLKSTLETSARIHFLGAFSGVYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGE5</accession>
    <name>A0A392UGE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010822270">
        <property type="protein sequence ID" value="MCI72639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6336" checksum="FA7A519C7B0CA280" modified="2018-12-05" version="1" fragment="single">MFRDLHLPVEFTPGALKLGMITISNGLLQEIADCQDDELLMTKRDLIVRGTTTEFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGY0</accession>
    <name>A0A392UGY0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010786911">
        <property type="protein sequence ID" value="MCI70975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGY0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI70975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6265" checksum="067D0BA611253BC8" modified="2018-12-05" version="1" fragment="single">MIVFDDASLRADGGLEHELFQCCSTFRLESGRAIDDGLMPLFFPSYNVGGALALLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIE5</accession>
    <name>A0A392UIE5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleobase-ascorbate transporter 1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010837393">
        <property type="protein sequence ID" value="MCI73389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIE5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3850" checksum="D3E0277766480B33" modified="2018-12-05" version="1" fragment="single">MQYLLQSTGTYQAAPRLTIATPPPAYVLSRGIGWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJF2</accession>
    <name>A0A392UJF2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010845887">
        <property type="protein sequence ID" value="MCI73759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJF2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5430" checksum="EDE4988D5D101284" modified="2018-12-05" version="1" fragment="single">SEVVLRGSVCASEVVLIGSVQRRALFVCSKMLRVVEVMLVLSTFCKVCSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJG8</accession>
    <name>A0A392UJG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010825225">
        <property type="protein sequence ID" value="MCI72784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI72784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7522" checksum="B14225C8CF45CCAF" modified="2018-12-05" version="1" fragment="single">MIQECDPKEIEGNVFVIIPEFNIPRQVEVTFNSQESTTLVICPPGSVPYTSEKAIPYKYNATMIENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UJR6</accession>
    <name>A0A392UJR6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Calmodulin-binding transcription activator</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010846611">
        <property type="protein sequence ID" value="MCI73791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UJR6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI73791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5633" checksum="F5341B2D8F1D7D14" modified="2018-12-05" version="1" fragment="single">VAGNPSVEISPYSNPTPPESGISHVSYSFPESVNLQKNHPITFGGVDSVEDTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQF4</accession>
    <name>A0A392UQF4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010893389">
        <property type="protein sequence ID" value="MCI75889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQF4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI75889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6516" checksum="88AFC551C0A2DC40" modified="2018-12-05" version="1" fragment="single">GCWRNAPSKLQEAGFGSGHCAARDPGWRNARCGVQVWLWPLLFARRAGGACAARGRDAYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UYR3</accession>
    <name>A0A392UYR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011012290">
        <property type="protein sequence ID" value="MCI81158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UYR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7958" checksum="C5A9D77DDFD4A800" modified="2018-12-05" version="1" fragment="single">PPKKEGGEASKSDKSRVAVNIIAGGFTRGGESNSARKRYVRRSTFDVLSIGQQALPSIPDISFNAEDGRDVMPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0R2</accession>
    <name>A0A392V0R2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011008921">
        <property type="protein sequence ID" value="MCI81023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0R2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI81023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5595" checksum="16F694C6B6AEA797" modified="2018-12-05" version="1" fragment="single">GADDWKVNNRRRVVTELRNYPRDIAQLPRIQPVLLDDKHVEAIKTRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4B8</accession>
    <name>A0A392V4B8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein putative Ty1-copia subclass</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011034633">
        <property type="protein sequence ID" value="MCI82089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4B8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6551" checksum="62E4815CE544548D" modified="2018-12-05" version="1" fragment="single">MEKSLINKLYAKQRLYGLRMQEGSDLQQHINVYQNILTDLTRLGVQMDDKDNAIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V4K4</accession>
    <name>A0A392V4K4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011060337">
        <property type="protein sequence ID" value="MCI83154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V4K4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7518" checksum="0D50EC07011602F5" modified="2018-12-05" version="1" fragment="single">MSCERVEAWDLVCLIVDEDHQLSDIDTVEWPMAAMDIPIVVAVYDKWEWSTETVDKETESADKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7Z5</accession>
    <name>A0A392V7Z5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011070097">
        <property type="protein sequence ID" value="MCI83563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7Z5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI83563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6393" checksum="134FAA584C6C1EA5" modified="2018-12-05" version="1" fragment="single">FGNGGIDILPSSGSLTIMLANSLTLVRRFLKLALLSCSHELPLLLALALLLHFSWNCNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V8I8</accession>
    <name>A0A392V8I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011093162">
        <property type="protein sequence ID" value="MCI84527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V8I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI84527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4567" checksum="4725F1A2E9915994" modified="2018-12-05" version="1" fragment="single">HYGNDWDFADAATDEDADAADEMAAAEMAASEMAADMVAGLTDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAP1</accession>
    <name>A0A392VAP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011080219">
        <property type="protein sequence ID" value="MCI83991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI83991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8520" checksum="8E89A7C863D8EC97" modified="2018-12-05" version="1" fragment="single">RKREDNLDAKGRKRNDQNGILNVKGRKREGGLDVKGRKRNDQNVILDVKRRKRKGNLDAKGRKRNDQNDILDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VAZ5</accession>
    <name>A0A392VAZ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011117121">
        <property type="protein sequence ID" value="MCI85508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VAZ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080147">
        <property type="term" value="P:root hair cell development"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044290">
        <property type="entry name" value="RRA1/2/3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46581">
        <property type="entry name" value="ARABINOSYLTRANSFERASE RRA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46581:SF3">
        <property type="entry name" value="ARABINOSYLTRANSFERASE RRA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI85508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7607" checksum="9573F92416C10D95" modified="2018-12-05" version="1" fragment="single">DIYLFMNSKILFKTVRNDANLSKLKPVIIHVNYHPDKLPRMKAIVEYYVNGKQDALKPFPDGSDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VCW4</accession>
    <name>A0A392VCW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011107393">
        <property type="protein sequence ID" value="MCI85109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VCW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI85109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="20" mass="1974" checksum="A819D3281A99CC79" modified="2018-12-05" version="1" fragment="single">MGTGVSGQASNANHEDSQIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VH87</accession>
    <name>A0A392VH87_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011149351">
        <property type="protein sequence ID" value="MCI86782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VH87"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="4748" checksum="0352C55EEF2FA349" modified="2018-12-05" version="1" fragment="single">MAESLPSIGDIWRQLATLSPPPHPATSGDLKNGARRHLATARRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VLQ8</accession>
    <name>A0A392VLQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011217218">
        <property type="protein sequence ID" value="MCI89348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VLQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3035" checksum="0380BE1F8BF6B227" modified="2018-12-05" version="1" fragment="single">MPSLPKTARHLPISSATHLSKPKTPLPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VW97</accession>
    <name>A0A392VW97_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011267012">
        <property type="protein sequence ID" value="MCI91251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VW97"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF39">
        <property type="entry name" value="TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR CCHC(ZN) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5553" checksum="2F37DCB625BFA20D" modified="2018-12-05" version="1" fragment="single">MTLILADRTKVYPYGILEDVLVRVNDTIFPADFVVMDIEEDEEAPILLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWV0</accession>
    <name>A0A392VWV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011286763">
        <property type="protein sequence ID" value="MCI91949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI91949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5718" checksum="F5992BBB09072D24" modified="2018-12-05" version="1" fragment="single">MSKRKYSIIHPKKLYARRSIGKKMKDIAKRIDAIAEERVKFGLNPGNME</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VY36</accession>
    <name>A0A392VY36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011300053">
        <property type="protein sequence ID" value="MCI92399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VY36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7000" checksum="5A773C1D687A3CD6" modified="2018-12-05" version="1" fragment="single">RSTNLRVAQGPEIPSPKTKLIARGAADRKNRRKQNNSIARGAEQAARGADARNMQENAIFMPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0E6</accession>
    <name>A0A392W0E6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011299228">
        <property type="protein sequence ID" value="MCI92375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0E6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3524" checksum="6765DF3592FBA50A" modified="2018-12-05" version="1" fragment="single">MLPKGSPPLSIEGLKSKLSALWKSIGKWGLTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W3Y8</accession>
    <name>A0A392W3Y8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011334299">
        <property type="protein sequence ID" value="MCI93635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W3Y8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4621" checksum="240752F1485A6204" modified="2018-12-05" version="1" fragment="single">MKVPRCSDRKRQASKLLAGRLTGRLAGRPSPVLENQVAVYTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7R0</accession>
    <name>A0A392W7R0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011397063">
        <property type="protein sequence ID" value="MCI95799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7R0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2246" checksum="930F8C75CF4A3BAE" modified="2018-12-05" version="1" fragment="single">TNPPPVDRLLLNDGSLAINLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC85</accession>
    <name>A0A392WC85_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011467578">
        <property type="protein sequence ID" value="MCI98234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC85"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI98234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4745" checksum="68C430669E33B03B" modified="2018-12-05" version="1" fragment="single">MIHALRLEEAAVEATNAKVGKDQADDADNDNASDDDVVADSEAED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WC95</accession>
    <name>A0A392WC95_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011467938">
        <property type="protein sequence ID" value="MCI98244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WC95"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI98244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="47" mass="5269" checksum="6E182D2151E63A52" modified="2018-12-05" version="1" fragment="single">MLVNKSCICDKDSKAKANYYKAINEKRGKDYARGKLYGRGGKKPDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N5E0</accession>
    <name>A0A392N5E0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mediator of RNA polymerase II transcription subunit 13</fullName>
        </recommendedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Mediator complex subunit 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026756">
        <property type="protein sequence ID" value="MCH94198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N5E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016592">
        <property type="term" value="C:mediator complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003713">
        <property type="term" value="F:transcription coactivator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045944">
        <property type="term" value="P:positive regulation of transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051139">
        <property type="entry name" value="Mediator_complx_sub13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041285">
        <property type="entry name" value="MID_MedPIWI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48249">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48249:SF3">
        <property type="entry name" value="MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18296">
        <property type="entry name" value="MID_MedPIWI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0678">Repressor</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="MID" evidence="8">
        <location>
            <begin position="28"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCH94198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6249" checksum="85C234FCA7939ADF" modified="2018-12-05" version="1" fragment="single">YQDDWLKASANCLQHWEKAPLEPYALQKPITYHVVCPDIDPLTSAAADFFQQLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N667</accession>
    <name>A0A392N667_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028953">
        <property type="protein sequence ID" value="MCH95093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="189"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="281"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH95093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="306" mass="34280" checksum="63A2D8AF4178A19F" modified="2018-12-05" version="1">MNKANHNHNPPQPTAQSIVSSPAPDSPHRPRLKLDVPRFNGGDAHGWIFKISQFFSYHQTPKEDRITIASFYLDGPALAWYQWMYRNSQIVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVNDYLTEFESLANRIVGLSPLDLLSCFISGLKVEIRREVLAQQPNSLSQAARLARLQEDKIQDQIKASRSKSPPAYTTHSRPPFNPLGRSAPGLLPTPPSKPRFRHLFEPKLAEHREKGLCFNCDKKWSKQHRCGGRAFLLLADEEDEDVDPSQLESTIDIDPSPSDDTPQAQLSLHALAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N7N5</accession>
    <name>A0A392N7N5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028753">
        <property type="protein sequence ID" value="MCH95018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N7N5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="119" mass="13330" checksum="792BA3AA35F9D7BE" modified="2018-12-05" version="1" fragment="single">PAPPQWFSDLRESSLSSMLSTMLLLCVLLFISFGKDKILVHRWLLLLHCLDLRFFPDMLRYAAFLLLVSLNSVSSSLQDPIAAVMFRFRSDPAVCDGLGVFGSKGPFIHVVICHRDCGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NJK4</accession>
    <name>A0A392NJK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heat-shock protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010040630">
        <property type="protein sequence ID" value="MCH99553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NJK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.60.34.10:FF:000012">
        <property type="entry name" value="Heat shock 70 kDa protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="entry name" value="Substrate Binding Domain Of DNAk, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="HEAT SHOCK PROTEIN 70KDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00301">
        <property type="entry name" value="HEATSHOCK70"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="Heat shock protein 70kD (HSP70), peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="200"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH99553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="229" mass="25186" checksum="0573A5FF502D7262" modified="2018-12-05" version="1" fragment="single">MDLFNECMEILGNCLTVSKIDKDSIDDVVLVGGSSRIPKVQKLLRDFFKGKDLCKSINPDEAVAFGAAVQAALLSDGIKNAPNLVLIDVTPLSLGFGIQHDCMKVVIPRNTTIPVKRKSRCATITDNQPSALIEVYEGERTRASDNNLLGYFQLSGIPPAPCGHPIYVHFSVDENGILTVSAKELSTGIMNEIIITNYKERLSAAEIKELIQEAENYRAEDEKFQQMAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P3R9</accession>
    <name>A0A392P3R9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060608">
        <property type="protein sequence ID" value="MCI06069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P3R9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI06069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="146" mass="16373" checksum="015F179BAA4415B8" modified="2018-12-05" version="1" fragment="single">ATNVWWCDRSRAVVTPPPSTPFGVVKRVGWLHCRHVGFSLEISGTAYIFGSGCIYFIWPGSCGYGLRSATLAIYDVVIVMFVSDFVVLRVFPFGSRLWLMLRDLVVLHQIVLLLLTLWFRFGIGVVVLVVADATRFSVPVGFGFLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P7S7</accession>
    <name>A0A392P7S7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chloroplast processing peptidase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010065728">
        <property type="protein sequence ID" value="MCI07529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P7S7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009535">
        <property type="term" value="C:chloroplast thylakoid membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010027">
        <property type="term" value="P:thylakoid membrane organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.109.10">
        <property type="entry name" value="Umud Fragment, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390:SF1">
        <property type="entry name" value="CHLOROPLAST PROCESSING PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="SIGNAL PEPTIDASE I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="LexA/Signal peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase S26" evidence="2">
        <location>
            <begin position="14"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI07529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="59" mass="6719" checksum="6238AD3FFF306391" modified="2018-12-05" version="1" fragment="single">MLLKLGCWPNSLLVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PEN3</accession>
    <name>A0A392PEN3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P-type Ca(2+) transporter</fullName>
            <ecNumber evidence="2">7.2.2.10</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="15 16">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">cv. 10/8</strain>
            <tissue evidence="15">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.10" evidence="2"/>
    <dbReference type="EMBL" id="LXQA010076713">
        <property type="protein sequence ID" value="MCI10558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PEN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005388">
        <property type="term" value="F:P-type calcium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000018">
        <property type="entry name" value="Calcium-transporting ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093:SF455">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE 12, PLASMA MEMBRANE-TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24093">
        <property type="entry name" value="CATION TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0109">Calcium transport</keyword>
    <keyword evidence="13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-1278">Translocase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="MCI10558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="205" mass="22236" checksum="2F58670E7E361342" modified="2018-12-05" version="1">MAASSLRCIAFAHMEISDSEGNDYMITREKKTHQILREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIATECGILDPKNANANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLSSFIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFV9</accession>
    <name>A0A392PFV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077077">
        <property type="protein sequence ID" value="MCI10642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="100"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI10642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="213" mass="24470" checksum="146945D92BB36168" modified="2018-12-05" version="1" fragment="single">MANKSVVNAAGMIKDVLVQVNDLAFPVDFVVIDIDLANEKDIILGRPFLATSQACIDMKKGEVTIKMNEEERTHKVYNKMSYHCYRAEVRDKKDRPSTSLEEEEDPKEDPEEESAEPGFTPVIELDDETDMEDEEDYVEENYLRRVAYELTDTLDYMHKCCTDSLRVIRNTLKEGIDRMNMELDSRGPDEAERRWHTSLHMLGTEVNSSNGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PJI3</accession>
    <name>A0A392PJI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transcription factor GAMYB-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010081004">
        <property type="protein sequence ID" value="MCI11649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PJI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00167">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.60:FF:000001">
        <property type="entry name" value="MYB-related transcription factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017930">
        <property type="entry name" value="Myb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001005">
        <property type="entry name" value="SANT/Myb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47995">
        <property type="entry name" value="TRANSCRIPTION FACTOR MYB33-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47995:SF18">
        <property type="entry name" value="TRANSCRIPTION FACTOR MYB65"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00249">
        <property type="entry name" value="Myb_DNA-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00717">
        <property type="entry name" value="SANT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51294">
        <property type="entry name" value="HTH_MYB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50090">
        <property type="entry name" value="MYB_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH myb-type" evidence="8">
        <location>
            <begin position="34"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Myb-like" evidence="7">
        <location>
            <begin position="37"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI11649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="141" mass="16148" checksum="A376F68D79D705F8" modified="2018-12-05" version="1">MMRRMKKEIEDEMFHDGETGLQLDDEGYDGSACGVVLKKGPWTSAEDDILVNYVKKNGEGNWNAVHKHTGLLRCGKSCRLRWANHLRPNLKKGTFTAQEEQLICELHAKMGNKWARMASFVFMKSLNSIHFPLLMSLLRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PKJ7</accession>
    <name>A0A392PKJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">30S ribosomal protein S13 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010080117">
        <property type="protein sequence ID" value="MCI11425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PKJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI11425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="5872" checksum="4004A786A08C3395" modified="2018-12-05" version="1" fragment="single">MVQTLAMPVAPSLSIISNPQFSNRVSFPILNTPKPKVQRLNIVCVRVGGVEIPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQ36</accession>
    <name>A0A392PQ36_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091472">
        <property type="protein sequence ID" value="MCI14213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PQ36"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI14213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="101" mass="11489" checksum="3E9E5F22AC01A738" modified="2018-12-05" version="1" fragment="single">MSDQDDFETSEATVNQTSTPPLGRRNRSDAEDDFAEETNDGNKRQKSDPSSTMKAGRQISSSHLYDKFDQETCENELVEMFIATDLPISFVENKAFQKFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PQP8</accession>
    <name>A0A392PQP8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010092385">
        <property type="protein sequence ID" value="MCI14423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010447">
        <property type="term" value="P:response to acidic pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010044">
        <property type="term" value="P:response to aluminum ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044300">
        <property type="entry name" value="STOP1/2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46352">
        <property type="entry name" value="PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46352:SF1">
        <property type="entry name" value="PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI14423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="143" mass="15854" checksum="9494AD9AF06DC1D2" modified="2018-12-05" version="1" fragment="single">MNPTGSLCANNWARSSSLVPPGNGLQTNLSLDPSSFFGVXXXXXXXXXXXXXXXXXXXXXXXXKDVKITDQETSKLQDWDPSAMLNNLSFLEEKIHQLQDVVHMIVDKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PW29</accession>
    <name>A0A392PW29_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Vacuolar protein sorting-associated protein 13A</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010097406">
        <property type="protein sequence ID" value="MCI15650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PW29"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13011" checksum="5E824A0D007A443D" modified="2018-12-05" version="1" fragment="single">MFQFLMLTCSFKHMQAGTTLAMLMKDAFSPTYGGNSIMDAIHKRNYYIIPQNKLGQDIFIRATEARGLQNIIKMPSGDMKAVKVPVSKDMLESHLRGKLCRKIRTMVTIIIAEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q046</accession>
    <name>A0A392Q046_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105061">
        <property type="protein sequence ID" value="MCI17347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q046"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.270:FF:000020">
        <property type="entry name" value="Transposon Tf2-6 polyprotein-like Protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050951">
        <property type="entry name" value="Retrovirus_Pol_polyprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984">
        <property type="entry name" value="PROTEIN CBG26694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37984:SF5">
        <property type="entry name" value="PROTEIN NYNRIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="2">
        <location>
            <begin position="106"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI17347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="188" mass="21530" checksum="5D054482804822F8" modified="2018-12-05" version="1" fragment="single">KSEEEHRDHLRIVLQVLEEKMLYAKLSKCEFWMKEISFLGHVISSEGIVVDPAKVDAVLQWSTPESVTEIRSFLGLAGYYRRFIEGFSKLAMPLTQLTRKNQAFVWDKHCEESFQELKRRLTTAPVLTLPDANEPFVVYCDASKTGLGGVLMQRGKVVAYASRQLKTYERNYPTHDLKLAAVVFTLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6L3</accession>
    <name>A0A392Q6L3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DELLA protein GAI-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GRAS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010116490">
        <property type="protein sequence ID" value="MCI19768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6L3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009610">
        <property type="term" value="P:response to symbiotic fungus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005202">
        <property type="entry name" value="TF_GRAS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31636">
        <property type="entry name" value="OSJNBA0084A10.13 PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03514">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50985">
        <property type="entry name" value="GRAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0539">Nucleus</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Leucine repeat II (LRII)" evidence="5">
        <location>
            <begin position="28"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="SAW" evidence="5">
        <location>
            <begin position="166"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="LXXLL motif" evidence="5">
        <location>
            <begin position="78"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI19768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="212" mass="23936" checksum="9ADED973B3B3E519" modified="2018-12-05" version="1" fragment="single">ALRPGGPPFLRLTGIGPPSHDNRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIMQLHRLLGSEPDPNNPSAIETVLGWIRSLNPKIMTVVEQEANHNEDGFMDRFTEALHYYSTVFDSLEACPVEPDKAMAEFYLQREICNVVCCEGPARVERHEPLVKWRERLGKTGFRPLHLGSNAFKQASMLLTLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q6R2</accession>
    <name>A0A392Q6R2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Harpin-induced 1</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010115547">
        <property type="protein sequence ID" value="MCI19592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q6R2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055301">
        <property type="entry name" value="Lea14-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004864">
        <property type="entry name" value="LEA_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31852">
        <property type="entry name" value="LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03168">
        <property type="entry name" value="LEA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117070">
        <property type="entry name" value="LEA14-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Late embryogenesis abundant protein LEA-2 subgroup" evidence="2">
        <location>
            <begin position="72"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI19592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="153" mass="16445" checksum="4535CF7E4DEE80E0" modified="2018-12-05" version="1" fragment="single">MKVGSGKGTKVCLTVTSVLIAIVLLIVILALTVFKAKHPVTTVDSLKLQDFDLNLDIAKLRVDLNITLDVDVSVKNPNKVGFKYSNTTAHLNYRGQLIGEVPIIAGEISSGETKGFNLTLTVMADRLLSNSQLYSDITSGSLPLNTFLIISGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2020-06-17" version="6" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9L4</accession>
    <name>A0A392Q9L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">65-kDa microtubule-associated protein 3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122852">
        <property type="protein sequence ID" value="MCI21011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI21011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="16874" checksum="8FC19EED83437F98" modified="2018-12-05" version="1">MSVFTSLFPVCAARRGLDIAGISVQKHSLGAASAQGIESPLTRQPFSSISSNVSSKANVVNAANEPSTQKTAPFTSPCKAMTVADVXNITPKAMPIPIPATPSTVSVPMSMALTPVPSSVLMNKAMTPVPSSTPFGCDMTPVQEIEYSFEERRFAHYMLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QC41</accession>
    <name>A0A392QC41_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Outer arm dynein light chain 1</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010123260">
        <property type="protein sequence ID" value="MCI21096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QC41"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056284">
        <property type="entry name" value="AIR9-like_A9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23197">
        <property type="entry name" value="IG_AIR9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIR9-like A9" evidence="1">
        <location>
            <begin position="3"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF23197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI21096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4815" checksum="4CBBD5C9585AA773" modified="2018-12-05" version="1" fragment="single">FLDLTLDDVGASIELVYTPMCKDGTKGSPKNVVESKIQSVISVLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QEB1</accession>
    <name>A0A392QEB1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Maturase K</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130832">
        <property type="protein sequence ID" value="MCI22504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QEB1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48475:SF2">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="31"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="165" mass="19061" checksum="CBD82C5B0C4A0D06" modified="2018-12-05" version="1" fragment="single">MLTSLSRFIAKSAQHALPLFKLLRKEAVFEWTKECEQALQHLKKALSEPPVLSRPNNDEVLYLYLAVASEAVSAALICETTEGQKPVYFTSKVLLGPELRYQLIEKIALALIYTAKRLRHYFLAHTIVVRTDQPIKSLLRRPDMVGRMLKWSLELSEFDIRYESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QR16</accession>
    <name>A0A392QR16_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heat shock factor-binding protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010153097">
        <property type="protein sequence ID" value="MCI26409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QR16"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4931" checksum="F77D576B36E7B60F" modified="2018-12-05" version="1">MGTRINELEQSINDLRAEMGVESSPSPAAAEKPKEEELKKEEGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QTD3</accession>
    <name>A0A392QTD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010155824">
        <property type="protein sequence ID" value="MCI26870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QTD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI26870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5109" checksum="290B2224E4FBF186" modified="2018-12-05" version="1" fragment="single">YVLGCVFGFALSPTANRTAASSMAVERGRRRKWWLPASGSRSGSCFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUQ8</accession>
    <name>A0A392QUQ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oleoyl-acyl carrier protein thioesterase 1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158694">
        <property type="protein sequence ID" value="MCI27330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUQ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016297">
        <property type="term" value="F:fatty acyl-[ACP] hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.129.10">
        <property type="entry name" value="Hotdog Thioesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049427">
        <property type="entry name" value="Acyl-ACP_TE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045023">
        <property type="entry name" value="FATA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31727">
        <property type="entry name" value="OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31727:SF6">
        <property type="entry name" value="OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20791">
        <property type="entry name" value="Acyl-ACP_TE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="Thioesterase/thiol ester dehydrase-isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-ACP thioesterase-like C-terminal" evidence="1">
        <location>
            <begin position="18"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6634" checksum="C2956AFB3664AB72" modified="2018-12-05" version="1">MAIPEEDSNCLKKIPKLKDPAQNSRLGLVPRRADLDMNQHVNNVTYIGWVLEVVRFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="27" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QUR2</accession>
    <name>A0A392QUR2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter B family member 9-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163246">
        <property type="protein sequence ID" value="MCI28048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QUR2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222:SF50">
        <property type="entry name" value="ABC TRANSPORTER B FAMILY MEMBER 9-LIKE ISOFORM X2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="70"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI28048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="131" mass="14168" checksum="1505FBF39B852860" modified="2018-12-05" version="1" fragment="single">SLGQTSPCLDAFAAGQAAAYKMLETIKRKPKIDPYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFVGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKGIREQIGLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVU6</accession>
    <name>A0A392QVU6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sulfate transporter 1.3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010163804">
        <property type="protein sequence ID" value="MCI28147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVU6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="SLC26A/SulP transporter" evidence="6">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI28147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4229" checksum="4F2A737237C7E1CF" modified="2018-12-05" version="1" fragment="single">LGFLIDFLSHAAIVGFMGGAAITIALQQLKVELANDINRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX86</accession>
    <name>A0A392QX86_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010167060">
        <property type="protein sequence ID" value="MCI28647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3558" checksum="CC7DD02D9621CFD3" modified="2018-12-05" version="1" fragment="single">GSGAVAPPPENGRHGGWPPELKNTGGCSCEGRERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX92</accession>
    <name>A0A392QX92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168864">
        <property type="protein sequence ID" value="MCI28908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005681">
        <property type="term" value="C:spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008380">
        <property type="term" value="P:RNA splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00590">
        <property type="entry name" value="RRM_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050907">
        <property type="entry name" value="SRSF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23147">
        <property type="entry name" value="SERINE/ARGININE RICH SPLICING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="3" id="KW-0508">mRNA splicing</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0747">Spliceosome</keyword>
    <feature type="domain" description="RRM" evidence="5">
        <location>
            <begin position="31"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI28908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="157" mass="18298" checksum="700A7A1CF682737C" modified="2018-12-05" version="1" fragment="single">MRENVEREGVGERRSRASQRGYIHRLEREATTFFFTNFPDDVKAVDLWPRFARYARVGEVYIPAKVDKQGRRFGFVKFREVKDAIELLRRVSNIWIGTFKLRINLSKFERRVEAIQKEEDQREGTGGQCHQGWRSFKAALVEEKVAGSSDGIDTNAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R198</accession>
    <name>A0A392R198_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010176475">
        <property type="protein sequence ID" value="MCI30027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R198"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="22"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI30027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="11514" checksum="D45062BDDF533975" modified="2018-12-05" version="1" fragment="single">RDADKAYAEQAAASAPPPPLPHQQQHQVPPQFPQQHQYSDYEMGMAATLYEQHRRMNCGLPYFSPPLMAAVQDYRAQIAIPSYNQQYPQRADLMWHFQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R2R7</accession>
    <name>A0A392R2R7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">F-box protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010182684">
        <property type="protein sequence ID" value="MCI30853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R2R7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051304">
        <property type="entry name" value="SCF_F-box_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47123:SF15">
        <property type="entry name" value="F-BOX PROTEIN SKIP23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9300" checksum="1579F8021446D08E" modified="2018-12-05" version="1" fragment="single">MFQSGDDGWMTIPDVSKGASGDICNFKGRICVVDDIGRTVMVGPDLSIDFMADPFNCYKARLCLVESELLLVDMWRDFIEDDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R501</accession>
    <name>A0A392R501_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Envelope-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010181040">
        <property type="protein sequence ID" value="MCI30625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R501"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI30625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="128" mass="14249" checksum="F6570548DA325F4B" modified="2018-12-05" version="1" fragment="single">NDPKSPEYRKVYVRGRCTEFSPDVVNQFLERSTGPVAAMKASNDEICRTLTNNQVRKWEGKVPSVKLTAKYALLNKIVVINWVPTSHTSEHAKSLAVQLPIVFPTLSCAIILDQHPDICTAADVPCTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RAJ2</accession>
    <name>A0A392RAJ2_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNase H type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010196860">
        <property type="protein sequence ID" value="MCI32575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RAJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI32575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="49" mass="5625" checksum="FF396826C5F0EF7D" modified="2018-12-05" version="1">MMVHEGQAYALQEATRWVQQWGLHNVAFLSDSQILVEAVNARDEGRRNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCH3</accession>
    <name>A0A392RCH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010208898">
        <property type="protein sequence ID" value="MCI33959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="5"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8941" checksum="7578DF3BF8AF5DAF" modified="2018-12-05" version="1" fragment="single">SLKEKEEAASQRDALSGEKAVLEEMVEGLQIEVGARYDSGFQFALEQLKIVFPDLDESKLGELDALNKIVDGKLVPFTSNAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RD46</accession>
    <name>A0A392RD46_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010214803">
        <property type="protein sequence ID" value="MCI34548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RD46"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="137" mass="15668" checksum="21E8A08700272066" modified="2018-12-05" version="1" fragment="single">MDTEVIESSKIHVDISLSSTNIPTSETQDIVISDHIELNDQNNAEIITNPNSEPNIPSIPKFSNPELVKLCNNIIKRVKEIHSLRYSFVEPNEYLTAWEKLKSDIIKDLELVQAGDMEDLVDYQENLKDWVKSVKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFI7</accession>
    <name>A0A392RFI7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010218134">
        <property type="protein sequence ID" value="MCI34902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFI7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="116" mass="13314" checksum="A3171F60A15F48F4" modified="2018-12-05" version="1" fragment="single">MPNVYYNTQGSLYSEAMTYRQQFSPAPFYPRFPSPEAWTEYRRADQIEYEAIMNRNEAIFYEQYEAHMKAQEEQRVVVASASAAATSAGSPEFTFSELGLEDPTAYHGFMNQDPPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RJK9</accession>
    <name>A0A392RJK9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sodium/hydrogen exchanger 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010233463">
        <property type="protein sequence ID" value="MCI36407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RJK9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="4718" checksum="947A5B404521263E" modified="2018-12-05" version="1" fragment="single">LRGAMAFALALQSIHDLPEGHGQTIFTATTAIVVLTVGTSLSFFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RLM2</accession>
    <name>A0A392RLM2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative serine/threonine-protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010236556">
        <property type="protein sequence ID" value="MCI36700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RLM2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11917" checksum="452401EF8F3F3EC0" modified="2018-12-05" version="1" fragment="single">MFKCNHSLSVTPPRSFGNYTNCSSYNIYYDPHNADQPPSFKVPSSLAKCTMFQVAIKDIPTSDPFYFLSPDIAFEVQLSDDCNKCFRHQGGRCQLDIHGKFHCAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RMX3</accession>
    <name>A0A392RMX3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010238530">
        <property type="protein sequence ID" value="MCI36896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RMX3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.370:FF:000001">
        <property type="entry name" value="Retrovirus-related Pol polyprotein from transposon 17.6-like protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI36896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9601" checksum="C15A8CB08615E41B" modified="2018-12-05" version="1" fragment="single">MKERLTTSPVLVLPQPDEPYEVYCDASHQGLGCVLMQHKRAVAYASRQLKNHEKNYPIHDLELAAVVFALKIWRHHLYGAKFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RPJ1</accession>
    <name>A0A392RPJ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CC-NBS-LRR resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010247333">
        <property type="protein sequence ID" value="MCI37690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RPJ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.430">
        <property type="entry name" value="Helical domain of apoptotic protease-activating factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042197">
        <property type="entry name" value="Apaf_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766:SF64">
        <property type="entry name" value="OS12G0206100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36766">
        <property type="entry name" value="PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0611">Plant defense</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI37690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="10282" checksum="29869129F0C9C7FC" modified="2018-12-05" version="1" fragment="single">MDHDQIIEVDLLSKEDAWTMFERYSGITNSSPNDLIDCGQSIVKECKQLPIAIAVTASNLKGQHKVYEWKVTLESLKKIGVMHRVDDAMFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RQS1</accession>
    <name>A0A392RQS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010257030">
        <property type="protein sequence ID" value="MCI38547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RQS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="11015" checksum="793453213C0AC5D7" modified="2018-12-05" version="1" fragment="single">MSTTTFPSLLSFKFKPSFPFPRHQQSPTTTTKFQAFNHQFTPNRIGFCPKPLRFTPVKRFAINDDESAVVGLNEAEKEARELSSLPGRFREHLKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RRH5</accession>
    <name>A0A392RRH5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010259964">
        <property type="protein sequence ID" value="MCI38797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RRH5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI38797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="122" mass="13735" checksum="F5BB6BE0340CA4AA" modified="2018-12-05" version="1" fragment="single">WDLDGVIPIYCLHTSKKNEDLNPVAQSQEAPTPTLQAFVKDESVGLDETDTMSTTFDSFRANSVHVTSTKESSKKPPKRSRKKKRTKWKTKGESLKSYPASVNSLLVDLNIAPLKEENKRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSI3</accession>
    <name>A0A392RSI3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010259354">
        <property type="protein sequence ID" value="MCI38750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSI3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI38750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="12124" checksum="E902202F5DE719B0" modified="2018-12-05" version="1" fragment="single">TVFDKKATDGLNKYVPFMKNKSNWSNQKSMANRNVVQRRPVHERLGYKTTFVPSNKPPMNQWVHGQQRIVEKGNSSGNRPMNFVQANKYAYKNNYMGKNPMTRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTN4</accession>
    <name>A0A392RTN4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010274670">
        <property type="protein sequence ID" value="MCI40011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTN4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5017369725" evidence="1">
        <location>
            <begin position="25"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7537" checksum="5E47E937B5F55898" modified="2018-12-05" version="1">MHKGNKFIDMLLIAVVAAAIAARSEKFTMAAPGHGEAERLGEADVIWVKRARFEFAVRVSRGLERLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU27</accession>
    <name>A0A392RU27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mitogen-activated protein kinase kinase kinase 10-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010268813">
        <property type="protein sequence ID" value="MCI39564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10265" checksum="D0B14A066F77CBC8" modified="2018-12-05" version="1" fragment="single">SGQEKLVKTRVENALKFALKKPKNNAVNVKLSFGLCGCQEESFKGRELGEIGEDSGSGKEFENSSQKIQLQMPLPTSSFIVSVDEWQTIKSGGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU69</accession>
    <name>A0A392RU69_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010270491">
        <property type="protein sequence ID" value="MCI39687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU69"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8652" checksum="E709E1AE320A52D6" modified="2018-12-05" version="1" fragment="single">ERLQLGGEGFKQGARYRGDWGDWQDVKPRRREALRQLDREQDRLRSVAQPWAQQQEWGGATKVRINYGSHEWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUL1</accession>
    <name>A0A392RUL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010278093">
        <property type="protein sequence ID" value="MCI40303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054722">
        <property type="entry name" value="PolX-like_BBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22936">
        <property type="entry name" value="Pol_BBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrovirus-related Pol polyprotein from transposon TNT 1-94-like beta-barrel" evidence="1">
        <location>
            <begin position="14"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="100" mass="10923" checksum="DB8BA88312B6CE6C" modified="2018-12-05" version="1" fragment="single">MAHTPLKIPSKEEWYFDSGCSKHMTGENKYLKEVRSYSEGCVIFGDGVKGKIKGIGRLASPGSPCLDDVLLVEGLTTNLNSISQLCEQGLNVHFNNSECT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RUR4</accession>
    <name>A0A392RUR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010279084">
        <property type="protein sequence ID" value="MCI40381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RUR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5564" checksum="B48DD95D9011ED23" modified="2018-12-05" version="1" fragment="single">SCHLRAAQGVMARRASVLRKLGYCSAIYAPRRRGWRVAPVYWKDASGTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RVV4</accession>
    <name>A0A392RVV4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cysteine proteinase RD21a-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010283639">
        <property type="protein sequence ID" value="MCI40758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RVV4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.70.10">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013128">
        <property type="entry name" value="Peptidase_C1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000668">
        <property type="entry name" value="Peptidase_C1A_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12411">
        <property type="entry name" value="CYSTEINE PROTEASE FAMILY C1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00112">
        <property type="entry name" value="Peptidase_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00645">
        <property type="entry name" value="Pept_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="Cysteine proteinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0788">Thiol protease</keyword>
    <feature type="domain" description="Peptidase C1A papain C-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI40758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9086" checksum="D1978B324D4569F4" modified="2018-12-05" version="1" fragment="single">SCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDSEEDYPYRAVDGRCDQNRVSHLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYD0</accession>
    <name>A0A392RYD0_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Receptor-like kinase</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010281473">
        <property type="protein sequence ID" value="MCI40586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYD0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI40586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="77" mass="8888" checksum="01F8600D5B39AF0F" modified="2018-12-05" version="1" fragment="single">PSDSAQVRLDLSACLCYFLLQRGLGVRQLREFNLALLGKWCWRMLVDREGLWFRVLAARYGVESGRLRDGGRRGSSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S1X2</accession>
    <name>A0A392S1X2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010309985">
        <property type="protein sequence ID" value="MCI42858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S1X2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6671" checksum="96BD9D5C22701FA4" modified="2018-12-05" version="1" fragment="single">KGYARKYVKDGDRETNEAQMAIDAPATDDEDNRTAVPTVFAITRLDDFLPPCDPDEEGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3A0</accession>
    <name>A0A392S3A0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010310594">
        <property type="protein sequence ID" value="MCI42912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3A0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI42912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="7274" checksum="B9E5CEA249679032" modified="2018-12-05" version="1" fragment="single">IENEYWRDTPESFGFPGENWRESASSSLPLAGPRSATTQEQARSLLFARRLTQRSSTNIIASMAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S5K0</accession>
    <name>A0A392S5K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ethylene-responsive transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the AP2/ERF transcription factor family. ERF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010320999">
        <property type="protein sequence ID" value="MCI43702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S5K0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="entry name" value="AP2/ERF domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051032">
        <property type="entry name" value="AP2/ERF_TF_ERF_subfamily"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31985:SF111">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31985">
        <property type="entry name" value="ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0010">Activator</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="53"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="3">
        <location>
            <begin position="65"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI43702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="7707" checksum="334BF7EF2A27B179" modified="2018-12-05" version="1" fragment="single">MAAAAYDVAAFHLKGHAARLNFPELVEKLPMPSSSEAEDIRVAAQQAALQFKTRTSSRISSASGSEGGGNSNSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S856</accession>
    <name>A0A392S856_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332731">
        <property type="protein sequence ID" value="MCI44587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S856"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="80" mass="8766" checksum="C048689122202234" modified="2018-12-05" version="1">MSWSNVPLDMHVMYGLNSGDPQPGPVPKGYLICIEPHVSWHTVFVVEAVGVDAKRKNMKRLVSKGRGDGGSAICFSCFLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAI6</accession>
    <name>A0A392SAI6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010340764">
        <property type="protein sequence ID" value="MCI45204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAI6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI45204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2971" checksum="AFC1F907916B29FE" modified="2018-12-05" version="1" fragment="single">DYEASGTTPRRYEPQVPSKLYNKTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SHG2</accession>
    <name>A0A392SHG2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010371664">
        <property type="protein sequence ID" value="MCI47380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SHG2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI47380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="97" mass="11150" checksum="797DC29647533503" modified="2018-12-05" version="1" fragment="single">MPNVYYQTQGTLYSEAMTYQQQFPPPLFYPRFPSPEAWNEYWRADQVEYAAIMDRNEAVFYEQYGAHMKAQEDQRAVGASVSAAGAYSPEFTLSELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SI00</accession>
    <name>A0A392SI00_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010373893">
        <property type="protein sequence ID" value="MCI47560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SI00"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="7"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI47560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="3842" checksum="73E9A7D18B049342" modified="2018-12-05" version="1" fragment="single">RRGLGASGHSRSSQQSSGYCHDKLVGRGIARWASRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJP1</accession>
    <name>A0A392SJP1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formimidoyltransferase-cyclodeaminase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010389825">
        <property type="protein sequence ID" value="MCI48667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJP1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005542">
        <property type="term" value="F:folic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.990.10">
        <property type="entry name" value="Formiminotransferase, N-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012886">
        <property type="entry name" value="Formiminotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037064">
        <property type="entry name" value="Formiminotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022384">
        <property type="entry name" value="FormiminoTrfase_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051623">
        <property type="entry name" value="FTCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12234">
        <property type="entry name" value="FORMIMINOTRANSFERASE-CYCLODEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12234:SF5">
        <property type="entry name" value="PUTATIVE, EXPRESSED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07837">
        <property type="entry name" value="FTCD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55116">
        <property type="entry name" value="Formiminotransferase domain of formiminotransferase-cyclodeaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formiminotransferase N-terminal subdomain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI48667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="11238" checksum="8DBDFA5C466B6F79" modified="2018-12-05" version="1" fragment="single">VFLYAAAHPTGKQLDAIRRELGYYRPNSMGNQWAGWTMPDILPQTPDEGPIVVSRSRGISMIGAQSWVTLYNIPLLSTDVSAARRIARKVSARGGGLPTVQTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SJS2</accession>
    <name>A0A392SJS2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010396261">
        <property type="protein sequence ID" value="MCI49121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SJS2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI49121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5026" checksum="C77FEA47ED3F5FE8" modified="2018-12-05" version="1">MIELRRNCGIRGNESGGRILPEGGIGTGMRNILDGGATSGKVSSAQSPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-11-27" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SQ68</accession>
    <name>A0A392SQ68_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Elongation factor 1-alpha-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010415260">
        <property type="protein sequence ID" value="MCI50354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SQ68"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054696">
        <property type="entry name" value="GTP-eEF1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44830">
        <property type="entry name" value="ELONGATION FACTOR 1 ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44830:SF1">
        <property type="entry name" value="TR-TYPE G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22594">
        <property type="entry name" value="GTP-eEF1A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GTP-eEF1A C-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI50354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="45" mass="5021" checksum="0254B98A1AE498F1" modified="2018-12-05" version="1" fragment="single">TFSEYPPLGRFAVRDMRQTVAFGVIKAVEKKDPGGGRCNCSFKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SSC4</accession>
    <name>A0A392SSC4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010430259">
        <property type="protein sequence ID" value="MCI51332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SSC4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI51332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="99" mass="10685" checksum="1A7F38195B553346" modified="2018-12-05" version="1" fragment="single">TKKKRATRSSTGRPLLQGGSTKNLSTGGDGLAQEGVEVSAASIEVPRPVCCPKSKKGMVSPPSFWDMDFNSLGFVEEHFGKYGDPDSFSQTTSEELRKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUJ2</accession>
    <name>A0A392SUJ2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010448216">
        <property type="protein sequence ID" value="MCI52503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUJ2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="29" mass="3153" checksum="9E12D5C44FA9902F" modified="2018-12-05" version="1" fragment="single">MKRKGGASDMKKAPIKNVAADKTIVQRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SVG1</accession>
    <name>A0A392SVG1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010447062">
        <property type="protein sequence ID" value="MCI52432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SVG1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2803" checksum="8FDC789D9E54C28C" modified="2018-12-05" version="1" fragment="single">EPNVPDDLLDDEELMEGEENADGWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SWG0</accession>
    <name>A0A392SWG0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010444328">
        <property type="protein sequence ID" value="MCI52240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SWG0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI52240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6135" checksum="28AD17195FA3E0DB" modified="2018-12-05" version="1" fragment="single">VAVPKLNTQLAMGGSSRGEGTLRHARSPLIRGCLLLGPIRARKSLTQIHANSSMRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T062</accession>
    <name>A0A392T062_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010478378">
        <property type="protein sequence ID" value="MCI54379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T062"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI54379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4944" checksum="B563DA89FC5417BF" modified="2018-12-05" version="1" fragment="single">MVLQDEDDEESDEEPLQRKRKRTETDKDQPELKRITTKAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="21" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T2I5</accession>
    <name>A0A392T2I5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="1">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <organism evidence="11 12">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">cv. 10/8</strain>
            <tissue evidence="11">Leaf</tissue>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="1"/>
    <dbReference type="EMBL" id="LXQA010483652">
        <property type="protein sequence ID" value="MCI54704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T2I5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051420">
        <property type="entry name" value="Ser_Thr_Kinases_DiverseReg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48005">
        <property type="entry name" value="LEUCINE RICH REPEAT KINASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48005:SF16">
        <property type="entry name" value="MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="non-terminal residue" evidence="11">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="MCI54704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="46" mass="5114" checksum="69D32FB27C638342" modified="2018-12-05" version="1" fragment="single">MRYCIGTGAYGSVYKAQLPSGKVVALKKLHGHEIEVPSFDESFRNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T3R1</accession>
    <name>A0A392T3R1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Microtubule-associated protein 70-2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Cytoskeleton</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MAP70 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010491278">
        <property type="protein sequence ID" value="MCI55134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T3R1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007010">
        <property type="term" value="P:cytoskeleton organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009768">
        <property type="entry name" value="MAP70"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07058">
        <property type="entry name" value="MAP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0206">Cytoskeleton</keyword>
    <keyword evidence="4" id="KW-0493">Microtubule</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI55134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="28" mass="3333" checksum="E3AF916C35051AE3" modified="2018-12-05" version="1" fragment="single">MDVDEFVNLLHGSNPMKVEFNRLENEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T4P2</accession>
    <name>A0A392T4P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010493387">
        <property type="protein sequence ID" value="MCI55265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T4P2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI55265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10610" checksum="00949E5A340C7CA4" modified="2018-12-05" version="1" fragment="single">SSQKKPKITPQLPAPNVSSVDLDSRDSKKENKEEKKLHKEKEELVEATKEIPRPIPDGEFELVPLGEDPSRWVKIGTGLPDLARKQLKACLREN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T6G6</accession>
    <name>A0A392T6G6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010515319">
        <property type="protein sequence ID" value="MCI56619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T6G6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI56619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10853" checksum="D0CB628B820F4791" modified="2018-12-05" version="1" fragment="single">YAAKFEELCRFAPHYNTMEAEEDKCVKFKNGLRPDIKQLIGFSEIRDFPTLVNKSRICDKDSKAKTSYYKAANEKRGRDMGRGRPYDKRGKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T878</accession>
    <name>A0A392T878_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010525574">
        <property type="protein sequence ID" value="MCI57239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T878"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI57239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4269" checksum="C5FF96646DEFCC71" modified="2018-12-05" version="1">MVTLAFVCHIRGLLPPLVDGALPEAVGREDDGDFVEYPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TBK0</accession>
    <name>A0A392TBK0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010547145">
        <property type="protein sequence ID" value="MCI58501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TBK0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5309" checksum="1D5F27D324F417A9" modified="2018-12-05" version="1" fragment="single">LVIVPSTKPSFIFAWSAVFIERDHVRWFPPLSKAATRGVPGLSEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TG91</accession>
    <name>A0A392TG91_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010558121">
        <property type="protein sequence ID" value="MCI59146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TG91"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="36" mass="4405" checksum="4A50059DE0F5F0A6" modified="2018-12-05" version="1" fragment="single">PEVQSQNLVKLQRLESFRSWKALEAESFRSWKHQNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TI86</accession>
    <name>A0A392TI86_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cysteine-rich receptor-like protein kinase</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010585795">
        <property type="protein sequence ID" value="MCI60662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TI86"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617:SF5">
        <property type="entry name" value="OS05G0421675 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36617">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="8663" checksum="F1A7A3FCDC719D0C" modified="2018-12-05" version="1" fragment="single">MLVDRGGLWFRVLAAQYGVERGRLREGGRSGSSWLREIVSICDGRGDLGGGWFGECVSKKVGDGLDTFFWTDPWLGGIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TIZ0</accession>
    <name>A0A392TIZ0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010575062">
        <property type="protein sequence ID" value="MCI60086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TIZ0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="8581" checksum="0D6C08302C53306B" modified="2018-12-05" version="1" fragment="single">MEEEPRIERFEPLANCKQPKIRTGRTLRINIELQQPENLRDVLNIARAFERKLKGSQGLLLTQDSKAYPEFEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJI0</accession>
    <name>A0A392TJI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010594124">
        <property type="protein sequence ID" value="MCI61132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5361" checksum="38718B068B7BDB54" modified="2018-12-05" version="1" fragment="single">YGAHMRAQEEQRAAASASAAAGHGSPIFTYSELGMDDSPGDFQAFMDPPASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TKI0</accession>
    <name>A0A392TKI0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010590771">
        <property type="protein sequence ID" value="MCI60947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TKI0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI60947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2755" checksum="205B5FC3D065659C" modified="2018-12-05" version="1" fragment="single">RRRTVSTETAETEDGFDGDGGWVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TMM8</accession>
    <name>A0A392TMM8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010618856">
        <property type="protein sequence ID" value="MCI62431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TMM8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6034" checksum="51B8B829282AE534" modified="2018-12-05" version="1">MEGGSSSYSSIPVVFSLSSQKKDIQELMINQRAMAAKQEDMSVDLKAIITILSQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TY64</accession>
    <name>A0A392TY64_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010685462">
        <property type="protein sequence ID" value="MCI65939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TY64"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI65939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9139" checksum="5A8C559BA39C0863" modified="2018-12-05" version="1" fragment="single">VGDIVVELGARKVRLAQQKAQREGDAPPSKEGELPDDTVKEGRVLMKSYRTQSDDAEWARNGIMATVHNGEAIPVVQNRIVDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U286</accession>
    <name>A0A392U286_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ser/thr protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010696858">
        <property type="protein sequence ID" value="MCI66506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U286"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008">
        <property type="entry name" value="LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46008:SF46">
        <property type="entry name" value="WALL ASSOCIATED KINASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI66506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9493" checksum="620E8B27EF098BB2" modified="2018-12-05" version="1" fragment="single">SSAMVTWPVRLNIALETAEALAYLHKKDVIHRDVKSNNILLDEKFHVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392U5H1</accession>
    <name>A0A392U5H1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010706432">
        <property type="protein sequence ID" value="MCI66985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392U5H1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="61"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="71"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI66985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9782" checksum="2CF93C0F59C6CACB" modified="2018-12-05" version="1" fragment="single">DDRYKFRFSDDFEIEKQFRSPARATFSVSDHRKRFPEYRSRQEELQEVHVKEIPVDTFEIRSSSPVKSRSPPSPPPPPPPPVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UGN9</accession>
    <name>A0A392UGN9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010805465">
        <property type="protein sequence ID" value="MCI71854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UGN9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="39"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI71854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8311" checksum="38CFDFDFF5210610" modified="2018-12-05" version="1" fragment="single">SVMAEPSPKKEKKKKSKKSSKEKKTDEDKAPDGTAAHVSPQSSQQLPEDNQSKQKTGDPVFSTATAKVSVVEEPEVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UHS0</accession>
    <name>A0A392UHS0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010808135">
        <property type="protein sequence ID" value="MCI71990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UHS0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI71990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3787" checksum="C6D3BEFAADB51921" modified="2018-12-05" version="1" fragment="single">TPPSPFTTTVLKRHSTGHYHYNQVRSVAPFVGTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-01-24" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UUG7</accession>
    <name>A0A392UUG7_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010882674">
        <property type="protein sequence ID" value="MCI75435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UUG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="2"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="77" mass="8963" checksum="5580E26D55C3A630" modified="2018-12-05" version="1" fragment="single">CRLFTAHFTASRRQPKTEAALEAIVQREDETLRLYLERFNKAVVEVKTEDSMKLYLFDRGLRRGSDFAKAVGIEEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UZJ3</accession>
    <name>A0A392UZJ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011015494">
        <property type="protein sequence ID" value="MCI81287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UZJ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="22"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI81287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8325" checksum="3DC27C11090FFAEF" modified="2018-12-05" version="1" fragment="single">SDSEDEEDIQTQPDSEDEEDTQTQPEEQVVTENYQVQPEQQAKVSHEWRGGVQEALGLEGSSTDKKEKAKSDSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V0E8</accession>
    <name>A0A392V0E8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010995794">
        <property type="protein sequence ID" value="MCI80445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V0E8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI80445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4524" checksum="9393D2D1C339A6DD" modified="2018-12-05" version="1" fragment="single">TRVRDRRLEPGLNLVVFTISSLPLLLFVLQLNLPSFCIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V2L2</accession>
    <name>A0A392V2L2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine/threonine protein kinase SRPK1</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011045636">
        <property type="protein sequence ID" value="MCI82528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V2L2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI82528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6315" checksum="3B1D1ABBAC13DAEA" modified="2018-12-05" version="1" fragment="single">MALMTKMFQYWARKNKMFSSTGNSSSGSKDKKEDKNRCFNCNKTGHFIAECPELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V5C4</accession>
    <name>A0A392V5C4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Microtubule-associated protein RP/EB family member 1c-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011067555">
        <property type="protein sequence ID" value="MCI83454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V5C4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004953">
        <property type="entry name" value="EB1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036133">
        <property type="entry name" value="EB1_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03271">
        <property type="entry name" value="EB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140612">
        <property type="entry name" value="EB1 dimerisation domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51230">
        <property type="entry name" value="EB1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0493">Microtubule</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EB1 C-terminal" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI83454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="73" mass="7959" checksum="71C8922B2F0AE5BB" modified="2018-12-05" version="1" fragment="single">FAKLRDIEILCQTPEVEHSPVFAAIQKILLATDDNGSGLQEALPLSPIAEVSEEKSSETHKRKNFANPEVDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V7E7</accession>
    <name>A0A392V7E7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011083281">
        <property type="protein sequence ID" value="MCI84127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V7E7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI84127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7189" checksum="A2DC57E9E40438F7" modified="2018-12-05" version="1" fragment="single">RRRATGSGGHGFTASRSSSIPEETADFLGGNVQSGSEEREDLNTVSGESHRSVPGIDLSVVILVTTDNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VG09</accession>
    <name>A0A392VG09_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">17.5 kd heat shock family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011123871">
        <property type="protein sequence ID" value="MCI85785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VG09"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031107">
        <property type="entry name" value="Small_HSP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11527">
        <property type="entry name" value="HEAT-SHOCK PROTEIN 20 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="HSP20-like chaperones"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="4">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI85785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="72" mass="8448" checksum="CFA540FB0AB9301A" modified="2018-12-05" version="1" fragment="single">VEIEDDRVLQISGERNVEKEDKNDEWHRMERSSGKFVRRFRLPENAKIDQVKASLENGVLTVTVPKEEIKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VQK1</accession>
    <name>A0A392VQK1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011250985">
        <property type="protein sequence ID" value="MCI90674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VQK1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4110" checksum="2E65E170FE3E1D8E" modified="2018-12-05" version="1" fragment="single">SVVEANDAACCWRGGGDDGRETKGGDKVNLAIEINIDFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VRN8</accession>
    <name>A0A392VRN8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011235917">
        <property type="protein sequence ID" value="MCI90132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VRN8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="31" mass="3558" checksum="06DF3E14AED73812" modified="2018-12-05" version="1" fragment="single">MEERIEEGLLGPRGQSYEEAAEETDLYTPDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSA3</accession>
    <name>A0A392VSA3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011222958">
        <property type="protein sequence ID" value="MCI89575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSA3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6185" checksum="CDCD2BCB47204619" modified="2018-12-05" version="1" fragment="single">MSDVASDAVMMRLRCSRTRKLKSQANCGAIRLRKLPHQQYCGRNCGCGPQFKTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VSW8</accession>
    <name>A0A392VSW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011248166">
        <property type="protein sequence ID" value="MCI90562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VSW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2737" checksum="E3A8EF4659D7484A" modified="2018-12-05" version="1" fragment="single">DYGWTNERAYRRGVSYISWYHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUR4</accession>
    <name>A0A392VUR4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011279088">
        <property type="protein sequence ID" value="MCI91667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUR4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6235" checksum="64A02D15AF2CE0CA" modified="2018-12-05" version="1" fragment="single">MAVEMEEGENSILREREVDMAKQTLSSASRARVSQVDPATQCDSPTQERVTQIVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUW2</accession>
    <name>A0A392VUW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011253204">
        <property type="protein sequence ID" value="MCI90751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI90751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="47" mass="5296" checksum="06D8439EC4FD1F9B" modified="2018-12-05" version="1" fragment="single">MANFEVRRVPVDPGSSVDIMYSSTFETLQLTERNLNPYVGSDLQGFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VZF7</accession>
    <name>A0A392VZF7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011298796">
        <property type="protein sequence ID" value="MCI92361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VZF7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="24" mass="2884" checksum="E7B0CFA318F73753" modified="2018-12-05" version="1" fragment="single">MFITEWKWDNIAMDFVGGLPKTRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W2J2</accession>
    <name>A0A392W2J2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011313836">
        <property type="protein sequence ID" value="MCI92890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W2J2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="37"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7221" checksum="93EA2A798B426523" modified="2018-12-05" version="1" fragment="single">MEKLKKKYNEKLDKVKEHYGAEVKLLEAAATTQGELVASLTKGKEEAISKLEVAEKEKTELEDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W389</accession>
    <name>A0A392W389_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011327808">
        <property type="protein sequence ID" value="MCI93385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W389"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6128" checksum="3998A68895164A2B" modified="2018-12-05" version="1" fragment="single">MSLSSSSGSRLRDASFIFVRLTPATMSVHLRPAHACGDVSFIFVRLAPATMSLSSLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W431</accession>
    <name>A0A392W431_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011356679">
        <property type="protein sequence ID" value="MCI94462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W431"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI94462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6055" checksum="D6FC303994015CE7" modified="2018-12-05" version="1" fragment="single">MAEIVGEPEEDHRLVDTITYPKMDWVGPEPRGIALVITPTALGVHTIVEDVEEGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W4I1</accession>
    <name>A0A392W4I1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011332296">
        <property type="protein sequence ID" value="MCI93560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W4I1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI93560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7741" checksum="38E004283DE0BFB3" modified="2018-12-05" version="1" fragment="single">LANLETLKAEIELEKKDIAEEAEIELESLKAEIELEIAKEAEIELENKDIAEAQKHTTKVSKQQVKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W841</accession>
    <name>A0A392W841_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011400700">
        <property type="protein sequence ID" value="MCI95933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W841"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI95933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7547" checksum="02A6AE10CAEF259D" modified="2018-12-05" version="1" fragment="single">EPTLTSESELILAPEALQLQRLYSFRGSRTSEALETSEAEIVPEAEYVHSLDYQSNQYSSLRQAIEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WCI9</accession>
    <name>A0A392WCI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011415333">
        <property type="protein sequence ID" value="MCI96460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WCI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="22" mass="2287" checksum="155E74FA9098B25B" modified="2018-12-05" version="1" fragment="single">GQFVGESGGVRTPQQVVSELLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WHW9</accession>
    <name>A0A392WHW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011451988">
        <property type="protein sequence ID" value="MCI97715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WHW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7430" checksum="051F7A13500A2323" modified="2018-12-05" version="1" fragment="single">EAVTKNLSTVTTPKKKKAEQPFPAVNSIGSPNPLDLDARLTKKERKEEKQKDKEPGTEKIYRPIPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MW89</accession>
    <name>A0A392MW89_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Exocyst complex component EXO84A-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EXO84 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021119">
        <property type="protein sequence ID" value="MCH91761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000145">
        <property type="term" value="C:exocyst"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006887">
        <property type="term" value="P:exocytosis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006893">
        <property type="term" value="P:Golgi to plasma membrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008104">
        <property type="term" value="P:intracellular protein localization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1220">
        <property type="entry name" value="Exo84p, C-terminal helical domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016159">
        <property type="entry name" value="Cullin_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033961">
        <property type="entry name" value="Exo84"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032403">
        <property type="entry name" value="Exo84_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042560">
        <property type="entry name" value="Exo84_C_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21426">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT 8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21426:SF15">
        <property type="entry name" value="EXOCYST COMPLEX COMPONENT EXO84A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16528">
        <property type="entry name" value="Exo84_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74788">
        <property type="entry name" value="Cullin repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0268">Exocytosis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Exocyst component Exo84 C-terminal" evidence="5">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="291"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCH91761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="350" mass="38482" checksum="9EB3C19A8D93500C" modified="2018-12-05" version="1" fragment="single">LGDGPRAHTLLLKSHKEKLNRNMQSLETTTYGGVSAYTASISHLVFSTISQAASDSLTVFAGEEPAYTSELVTWAVRQAEEFSLLLKKRILASIAASGGLRIASECVHVCLXXXXXXXXXXXXXXXVLIKHFRPFVEQALNTNLKRIEQSSAALAAADDWLLAYAPTSRNNNPGLPPVSSFSSLTSHQPKLSSSAHKFNSMVQELFEDVGPLEVLQLDGLALEGLHQVFNFYVNLLINAMPGSAVTENLEGTGHKIVKIAETETQQIALLANAILLADELLPRAVIKLSHSTKGDEDSQRRASDKQRPPEQRELKKKLQREVDRLRDSFCRQHALELIFAEDGEPLLNAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392MWZ8</accession>
    <name>A0A392MWZ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010021761">
        <property type="protein sequence ID" value="MCH92047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH92047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="109" mass="12009" checksum="B2CA593663589B92" modified="2018-12-05" version="1">MQKEHAVEVEKLKKEAANLTRERDDAITXSSGLAEEKTTLEKEVEGLQVXVGASLDEGFSFALDQVRVLFPHLDEQRLSEADAMKRIEDGKLVDVIPPLVVDATISPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-06-18" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N788</accession>
    <name>A0A392N788_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ty3/gypsy retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010028743">
        <property type="protein sequence ID" value="MCH95015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N788"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016197">
        <property type="entry name" value="Chromo-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056924">
        <property type="entry name" value="SH3_Tf2-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835:SF99">
        <property type="entry name" value="CHROMO DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45835">
        <property type="entry name" value="YALI0A06105P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24626">
        <property type="entry name" value="SH3_Tf2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54160">
        <property type="entry name" value="Chromo domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="271"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCH95015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="311" mass="35552" checksum="B198B7F5E17A52EE" modified="2018-12-05" version="1" fragment="single">AYHPQTDGQYEILNKCLEMYLRCFTYDNPKSWVKALPWAEFWYNAAFHTSLGMTPFKALYGRDPPTLIRQPHNAQDASEISEQLANRDELLAKLKTNLHRAQQIMKGQADKKRQDLTMQVGDEVLVKLQPYRQHSAALRKNQKLSMKYFGPFKIIAKVGTVAYKLQLPSTARIHPVFHVSQLKLFKGDTQEPYLPLPLTVTEMGPVMQPAQVLATRTILTGMHQVQKVLVQWENVLQDEATWEDFEDIQASYPNFNLEDKVDFKGKGNVMKSRGKGVQEMGDESHGATNKHNKLPDYEHMGRGQRNVLAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NAR3</accession>
    <name>A0A392NAR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LINE-1 reverse transcriptase like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032066">
        <property type="protein sequence ID" value="MCH96329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NAR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01650">
        <property type="entry name" value="RT_nLTR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000477">
        <property type="entry name" value="RT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31635:SF196">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00078">
        <property type="entry name" value="RVT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50878">
        <property type="entry name" value="RT_POL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="270" mass="30853" checksum="67B945564759A4E1" modified="2018-12-05" version="1">MQYFLRKNAKGAGGSTKLSEMTAFGDFIEKMELIDSSVLFWERNSLWFKPDGSARSRIDRLKGVIRKLISTCQTAFVPGRQILDGVVVVNELIDLAKRRRDKALLLKVDFEKAYDSVNWKYLNFVLRKMKFPTKWMEWMKACIFTSSMSILVNGSPTEDFVVGKGLRQGDPLSPFLFLLAAEGLTRLTHKAVEIGTFKGFKVSEELKYDILQFADDTILIGEGSWDNLWSIKTILRSFEMVSGLKVNFFKSKLYGLNMEVFLAKDLHLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P0E0</accession>
    <name>A0A392P0E0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger MYM-type protein 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010058890">
        <property type="protein sequence ID" value="MCI05503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P0E0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055298">
        <property type="entry name" value="AtLOH3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025398">
        <property type="entry name" value="DUF4371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11697">
        <property type="entry name" value="GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11697:SF230">
        <property type="entry name" value="ZINC FINGER, MYM DOMAIN CONTAINING 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14291">
        <property type="entry name" value="DUF4371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4371" evidence="1">
        <location>
            <begin position="3"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="228" mass="25621" checksum="86A5D9E73C7C0AB2" modified="2018-12-05" version="1" fragment="single">WYADRKKKVRQVVLENAPENDKVVCPAIQKKIVNAVSLETTKAIVNDLGDELFAILVDKSRDISNKEQMVVVLRYVNKYGSIVERFWGVVHVKSTTAVTLKMAIDNLFCKHSLTTSRIRGQSYDGASNMKGELRGLKSLILRESPSTFYVHCFANKLQLALFAIAKDNIEFCSLFSIVSTLINVVMGSCKRNDMLHDEQRDKVMNALKNGEIVSARCLNQETSLKATC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P1S6</accession>
    <name>A0A392P1S6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myb-like protein X-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010060247">
        <property type="protein sequence ID" value="MCI05948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33700">
        <property type="entry name" value="MYB-LIKE PROTEIN X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33700:SF29">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="58"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="90"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="106"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="132"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="177"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="235"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI05948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="272" mass="31104" checksum="AB721928B97FF48B" modified="2018-12-05" version="1" fragment="single">VKHNHDKKKEFDKNDLKLPDRTEPDQILKLGRXXXXXGKVEVDQNEKHEEEEEDEHVVDDVENKREHDEHQQEGEDGNKHETEESEENVDEGREEHGEEENKHEADEEQEEDESKSEEIEDEGGDAETDENDHDKSEADNDHDKADADNDHDDEVVDDEKEKEEEGDETENEEKEDEEKGGLVENHENHEAREEHYKGDDASSAVTHDTHSTSTETETINLENADLTVQMNIGKPENETTYHSDESNRNQSDSDLKVTEGEVTDAISSNATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P705</accession>
    <name>A0A392P705_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066844">
        <property type="protein sequence ID" value="MCI07838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P705"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="170" mass="19446" checksum="9EECF06AA4DC0D21" modified="2018-12-05" version="1" fragment="single">FNSMATSDLRKLALNHETSRAEKTAEEMGLRHTEAEKKYTEHIEGLKSVQLEEIAKLKGKHEEALATAKNDLEDLKKTHAEEKSSLMKEIRLLTLVRNVFMVSLFQIGRQVWDLQADVEELEEDNEALKQSMADKYFDEFQSVVDQVKALFPDLDPEILSQVDVSEALIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P8B4</accession>
    <name>A0A392P8B4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010067336">
        <property type="protein sequence ID" value="MCI07982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P8B4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026960">
        <property type="entry name" value="RVT-Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13966">
        <property type="entry name" value="zf-RVT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Reverse transcriptase zinc-binding" evidence="1">
        <location>
            <begin position="57"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI07982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="180" mass="21239" checksum="725B560AD42EBF17" modified="2018-12-05" version="1" fragment="single">MGIWDNFIWSWKLVWTEALNVSEAETARELHALLEQVQPKCSSRDKRRWIPNSAGFFSVRSAYEVQQSRLEVAAICTQTEAALKMLWFNNVPSKVSIFGWRLLLEKLPTREALHRRGIITNNHEKCCVFCFKEEDDLYHIFFKCSIVMQVWQSIFVWLNTNFIHFVTVPHHFSRFGDIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9F9</accession>
    <name>A0A392P9F9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068826">
        <property type="protein sequence ID" value="MCI08377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067:SF9">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33067">
        <property type="entry name" value="RNA-DIRECTED DNA POLYMERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="232"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="232"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="262" mass="30022" checksum="4271C92E73E9B2D3" modified="2018-12-05" version="1" fragment="single">MEAWIEFVKEKNCEAQEGESTELVTTQIELDSKGDEREDSEADKVVEAPRSEEEIHKEDKEPSQTKETDLERFKETLKKLEAISPEGEQQRDECIFIPEEVSAILRRKPQPKRDDIRSLPIPCSIGEVNIEGALCDLDSNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEICMMGIIKDVPVKINDRVILVDFVVIQIDEDIPLTLGKQFLAAIRSVIQQEELVLRTDDKEEAHPEEEYKEKDQDKLFPNYDSQLQNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392P9Z3</accession>
    <name>A0A392P9Z3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ribonuclease H protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010066417">
        <property type="protein sequence ID" value="MCI07725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392P9Z3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF80">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI07725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="197" mass="22708" checksum="2D29F9BE247BA430" modified="2018-12-05" version="1" fragment="single">MAGRVQLVKSVIQGMLVHSFSIYSWPNNLINEMERWMRNFIWSGDVTQRKLVTVAWKKVCSSFNEGGLGIRSLSMLNQANNLKLCWDLIQSNLQWAHLLRSRVLNGSKPISYHVYSSIWSSIKHKFSEVMEQVSWQVAHLHQELNSTVSNFIINSKWAIPSCILNAYPQLQGLVDRVTIPFVAKEDSLYWMKSHDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PA61</accession>
    <name>A0A392PA61_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mic1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010071115">
        <property type="protein sequence ID" value="MCI09021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031902">
        <property type="term" value="C:late endosome membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005765">
        <property type="term" value="C:lysosomal membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035658">
        <property type="term" value="C:Mon1-Ccz1 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010506">
        <property type="term" value="P:regulation of autophagy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040371">
        <property type="entry name" value="RMC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009755">
        <property type="entry name" value="RMC1_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12897">
        <property type="entry name" value="COLON CANCER-ASSOCIATED PROTEIN MIC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12897:SF4">
        <property type="entry name" value="REGULATOR OF MON1-CCZ1 COMPLEX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07035">
        <property type="entry name" value="RMC1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Mic1" evidence="2">
        <location>
            <begin position="18"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI09021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="121" mass="14155" checksum="C21DE5604C2413A1" modified="2018-12-05" version="1" fragment="single">MLFIXXXXXXXXXXXVLPNLYVLIIQLLVRNERYAELALFVINKILEPSKEVALQLLESGRQNAQTRKLGLKMLRQLGLHNDYVLLLVQDGYYLEALRYARKYRGDNGNLRNRCYSFLMIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PAT8</accession>
    <name>A0A392PAT8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010068847">
        <property type="protein sequence ID" value="MCI08386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PAT8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="9"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="159" mass="17307" checksum="15FE25C7E5A7BF2E" modified="2018-12-05" version="1" fragment="single">VRRRFAIKKGGGGLRRNVSTSSSESIKDPDVSSPLQCTDRAVLGGIELEVVLPTIDRIVQAANCEGSGLGTLLLQEDVAYGSAHRFPMIVGSFNIRGLGSRVNMRKVLCVIAFRETLTATGSSYRLLDIVETSLGNKFGVLWLMCMLNVILRTKEDFGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PFG3</accession>
    <name>A0A392PFG3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Hydroxysteroid 11-beta-dehydrogenase 1-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077816">
        <property type="protein sequence ID" value="MCI10838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PFG3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43391:SF69">
        <property type="entry name" value="11-BETA-HYDROXYSTEROID DEHYDROGENASE-LIKE 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43391">
        <property type="entry name" value="RETINOL DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI10838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10549" checksum="4DD3EC01A8330312" modified="2018-12-05" version="1" fragment="single">MARSLGSPDVTIIGADVTKLQDTKRFVDETVNHFGRLDHLVNNAGVIGVPILIEDFPNFTKYTSIMETNFWGAAYGTLYAIPHLKNSKGRIIVVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="29" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PPI9</accession>
    <name>A0A392PPI9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative methionine-tRNA ligase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010087348">
        <property type="protein sequence ID" value="MCI13216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PPI9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017101">
        <property type="term" value="C:aminoacyl-tRNA synthetase multienzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023458">
        <property type="entry name" value="Met-tRNA_ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765">
        <property type="entry name" value="METHIONINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765:SF1">
        <property type="entry name" value="METHIONINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methionyl/Leucyl tRNA synthetase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI13216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12256" checksum="FCE73162BCB1784B" modified="2018-12-05" version="1" fragment="single">VGVFGNDVKDTNIPVEVWRYYLLINRPEEGSDADFTWPDLQAKLNNELLNNLGNFVNRVLSFIAKPAGVGYNSIIPNVPDDVSGDSHVPTNELADKVSAYLDQYIEAMEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="25" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWG7</accession>
    <name>A0A392PWG7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Kinesin-related protein 6-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="6 7">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">cv. 10/8</strain>
            <tissue evidence="6">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098198">
        <property type="protein sequence ID" value="MCI15839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWG7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005874">
        <property type="term" value="C:microtubule"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008017">
        <property type="term" value="F:microtubule binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003777">
        <property type="term" value="F:microtubule motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007019">
        <property type="term" value="P:microtubule depolymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007018">
        <property type="term" value="P:microtubule-based movement"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.850.10">
        <property type="entry name" value="Kinesin motor domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027640">
        <property type="entry name" value="Kinesin-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019821">
        <property type="entry name" value="Kinesin_motor_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001752">
        <property type="entry name" value="Kinesin_motor_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036961">
        <property type="entry name" value="Kinesin_motor_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47971:SF15">
        <property type="entry name" value="KINESIN-LIKE PROTEIN KIN-13B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47971">
        <property type="entry name" value="KINESIN-RELATED PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00225">
        <property type="entry name" value="Kinesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00380">
        <property type="entry name" value="KINESINHEAVY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00129">
        <property type="entry name" value="KISc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00411">
        <property type="entry name" value="KINESIN_MOTOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50067">
        <property type="entry name" value="KINESIN_MOTOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0505">Motor protein</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Kinesin motor" evidence="5">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="6">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="MCI15839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="147" mass="16608" checksum="E46E92E4544B8B91" modified="2018-12-05" version="1" fragment="single">MQPLPLKASQDILRLMHYTYQNQGFQLYVSFFEIYGGKLFDLLNDRKKLLMREDGRQQVCIVGLQEYRVFEVETIKQFIEKGNATRSTGTTGANEESSRSHAILQLVIKRSADGSESKPARVIGKLSFIDLAGSERGADTTDNDKQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q051</accession>
    <name>A0A392Q051_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periodic tryptophan protein 2-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010104389">
        <property type="protein sequence ID" value="MCI17209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q051"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034388">
        <property type="term" value="C:Pwp2p-containing subcomplex of 90S preribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032040">
        <property type="term" value="C:small-subunit processome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027145">
        <property type="entry name" value="PWP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858:SF0">
        <property type="entry name" value="PERIODIC TRYPTOPHAN PROTEIN 2 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19858">
        <property type="entry name" value="WD40 REPEAT PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50294">
        <property type="entry name" value="WD_REPEATS_REGION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="96" mass="10558" checksum="495CBF83F1823643" modified="2018-12-05" version="1" fragment="single">HSHDVLTVVYRPDGRQVACSTLDGQIHFWDPIDGLLMYTIEGSRDIAGGRLMTDRRTAANKSTGKCFTTLCYSADGSYILAGGSSRYICMYDVADQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q381</accession>
    <name>A0A392Q381_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plant/T31B5-30 protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010109568">
        <property type="protein sequence ID" value="MCI18309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q381"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058580">
        <property type="entry name" value="DUF2828"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011205">
        <property type="entry name" value="UCP015417_vWA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31373">
        <property type="entry name" value="OS06G0652100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31373:SF17">
        <property type="entry name" value="OS06G0652100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11443">
        <property type="entry name" value="DUF2828"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2828" evidence="2">
        <location>
            <begin position="38"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="155"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="193"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI18309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="219" mass="24817" checksum="7F29AFEA8166B101" modified="2018-12-05" version="1" fragment="single">ATTTLLGPPEIYSATTTTTSDNVFNSSKTNRNPPMGLTENMSATFLSTSNPCVDFFFHVVPDTPSETLLHRLRRAWSHNPVTTLKLVCNLRGVRGTGKSDRKGFYTAALWFHRNHPKTLASNVPSLADFGYFKDLPEILYRLLEGSSVRKIQKHEWEQRKSGSKNKRSYSPYFRTRKPNKKRKLTNKPNGWKGTEKDSLMSEETAARAKAQKETAHALK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="24" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q468</accession>
    <name>A0A392Q468_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein FAR1-RELATED SEQUENCE 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010111417">
        <property type="protein sequence ID" value="MCI18697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q468"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018289">
        <property type="entry name" value="MULE_transposase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47718">
        <property type="entry name" value="OS01G0519700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47718:SF13">
        <property type="entry name" value="OS09G0290500 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10551">
        <property type="entry name" value="MULE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MULE transposase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI18697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="81" mass="9290" checksum="B385EACD5902787B" modified="2018-12-05" version="1" fragment="single">LLEQFMEAVEGKVPISVITDGDLAMKNAIWRVFPRAHHRLCAWHLLRNAISNVGILDVMMYLKKCMLGDIEVSRPIRRNMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4Y4</accession>
    <name>A0A392Q4Y4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidate phosphatase LPIN3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010114583">
        <property type="protein sequence ID" value="MCI19391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4Y4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008195">
        <property type="term" value="F:phosphatidate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026058">
        <property type="entry name" value="LIPIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013209">
        <property type="entry name" value="LNS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031315">
        <property type="entry name" value="LNS2/PITP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12181">
        <property type="entry name" value="LIPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12181:SF59">
        <property type="entry name" value="PHOSPHATIDATE PHOSPHATASE PAH1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08235">
        <property type="entry name" value="LNS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00775">
        <property type="entry name" value="LNS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LNS2/PITP" evidence="1">
        <location>
            <begin position="2"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI19391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7604" checksum="DEDE4B9EC4AB2A81" modified="2018-12-05" version="1" fragment="single">MTVIKRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYSKIGIPKGKIFIINPKGEVAIND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q979</accession>
    <name>A0A392Q979_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent RNA helicase DHX29-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010119761">
        <property type="protein sequence ID" value="MCI20419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q979"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056890">
        <property type="entry name" value="UBA_DHX29-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24899">
        <property type="entry name" value="UBA_DHX29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-dependent RNA helicase DHX29-like UBA" evidence="2">
        <location>
            <begin position="32"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF24899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI20419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="126" mass="13848" checksum="37DD4FABE22558BD" modified="2018-12-05" version="1" fragment="single">ENENRIRRLLLNSARPTPATDDTLTKDQKAKKLKTVYEKLSCEGFTDHHIELALSALKECATFESALDWLCLNLPGNELPLKFSSGSSFHYTEGGSVGVILNQQDNSTPSVDPSITTKDQALESPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q9K0</accession>
    <name>A0A392Q9K0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">tRNA-splicing endonuclease subunit sen54 amino-terminal protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010120431">
        <property type="protein sequence ID" value="MCI20552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000214">
        <property type="term" value="C:tRNA-intron endonuclease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000379">
        <property type="term" value="P:tRNA-type intron splice site recognition and cleavage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024337">
        <property type="entry name" value="tRNA_splic_suSen54"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21027">
        <property type="entry name" value="TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21027:SF1">
        <property type="entry name" value="TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9839" checksum="3868455ABE185CC2" modified="2018-12-05" version="1" fragment="single">LGYIIGRHDVAWSLKSIRSSRKPVAVEGAEESKQQVDTSSKVELSISKLFGELKINDLKPDFDIYLPDSRFRKSSPGDPNFLXYLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QBH6</accession>
    <name>A0A392QBH6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010122283">
        <property type="protein sequence ID" value="MCI20906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QBH6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI20906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="89" mass="9993" checksum="FEFF937FBD10A9BC" modified="2018-12-05" version="1" fragment="single">SGKDCGECVCDGEILPVFNFTGIMRARKRLCVEEIILVELMRLLKLLVGARIPVFYLREIWVSWELCIGDLLPVFSLFGSSPSFGIAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QE01</accession>
    <name>A0A392QE01_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">50S ribosomal protein L29 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130192">
        <property type="protein sequence ID" value="MCI22378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QE01"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009507">
        <property type="term" value="C:chloroplast"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050063">
        <property type="entry name" value="Ribosomal_protein_uL29"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10916">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10916:SF0">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL29C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI22378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="57" mass="6607" checksum="6DBD0E07022407F8" modified="2018-12-05" version="1" fragment="single">QIARLLTVKREREIEEGIGKRLSRKLDKQWKKNIVVKPPPTVLRLREEEAAAEAAED</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="18" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QF72</accession>
    <name>A0A392QF72_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010132443">
        <property type="protein sequence ID" value="MCI22808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926:SF502">
        <property type="entry name" value="SELENIUM BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01535">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="22"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="repeat" description="PPR" evidence="2">
        <location>
            <begin position="123"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI22808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="160" mass="17839" checksum="37F022A9A1C023FF" modified="2018-12-05" version="1" fragment="single">MYAKCGYLREAQLVFDELESKNEVSWNALISGYARKGDGEEALALFVKMQREDYGATDFTYSALLCSSSSTGSLEQGKWLHAHMMKSGRRLVGYVGNTLLHMYAKSGNIWDAXXXXXXLVKVDVISCNSMLIGYAQHGLGKEAVDLFEEMILWDGIKPND</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QFF6</accession>
    <name>A0A392QFF6_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcription elongation factor A protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010130622">
        <property type="protein sequence ID" value="MCI22460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QFF6"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.30">
        <property type="entry name" value="Transcription elongation factor S-II, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003618">
        <property type="entry name" value="TFIIS_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036575">
        <property type="entry name" value="TFIIS_cen_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11477:SF20">
        <property type="entry name" value="SPOC DOMAIN _ TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11477">
        <property type="entry name" value="TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07500">
        <property type="entry name" value="TFIIS_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00510">
        <property type="entry name" value="TFS2M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46942">
        <property type="entry name" value="Elongation factor TFIIS domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51321">
        <property type="entry name" value="TFIIS_CENTRAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TFIIS central" evidence="1">
        <location>
            <begin position="118"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI22460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="198" mass="22219" checksum="0D4AED691BA3FD1A" modified="2018-12-05" version="1" fragment="single">AGSASADTAVEQRQEICQSVNSSLAAADSIDHVIGEHMNSTSIEDFSEKPKDYGAGFTNVSNNEDMLSSDKQDFQSNYTLTTDDVPFSDTFFVKDELLQGNGLSWVFSDMDHMMDMDDQRESQTMLEKKLEPEETGGVCSEVVPLPELLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QG30</accession>
    <name>A0A392QG30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Serine/threonine-protein phosphatase BSL3-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135594">
        <property type="protein sequence ID" value="MCI23353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QG30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006652">
        <property type="entry name" value="Kelch_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46422">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46422:SF4">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN PHOSPHATASE BSL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01344">
        <property type="entry name" value="Kelch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="6889" checksum="04880A972060129B" modified="2018-12-05" version="1" fragment="single">VVLDTAAGVWCDTKSVVTSPRAGRYSADAAGGDASVELVRRCRHAAAAVGDLIFIYGGLRGGQPAVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QI02</accession>
    <name>A0A392QI02_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine-rich receptor-like protein kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010136787">
        <property type="protein sequence ID" value="MCI23579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QI02"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710">
        <property type="entry name" value="BNAC02G09200D PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33710:SF64">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="103" mass="12211" checksum="B74192A697769919" modified="2018-12-05" version="1" fragment="single">SDHIPFNQFIDESVLIDLPLSGRKFTWYKGDELSMSRLDRFLLSEEWWPSRMLKCWKDIPGYHLFMRDKWNALQLDGWGGFGGQEGRREFVRGRVRGTAWDNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QJ52</accession>
    <name>A0A392QJ52_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="9 10">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">cv. 10/8</strain>
            <tissue evidence="9">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010138402">
        <property type="protein sequence ID" value="MCI23882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QJ52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010447">
        <property type="term" value="P:response to acidic pH"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010044">
        <property type="term" value="P:response to aluminum ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055187">
        <property type="entry name" value="C2CH-3rd_BIRD-IDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044300">
        <property type="entry name" value="STOP1/2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058196">
        <property type="entry name" value="zf-C2H2_STOP1/2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46352">
        <property type="entry name" value="PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46352:SF14">
        <property type="entry name" value="PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 2-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22995">
        <property type="entry name" value="C2CH-3rd_BIRD-IDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23118">
        <property type="entry name" value="zf-C2H2_STOP2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="BIRD-IDD transcription factor third C2HC zinc finger" evidence="7">
        <location>
            <begin position="2"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="STOP1/2-like C2H2-type zinc finger" evidence="8">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="9">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF22995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF23118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="MCI23882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="10156" checksum="EF5DDAF3AFE9A7A7" modified="2018-12-05" version="1" fragment="single">MYSCNRCNKKKYSVLSDLKSHMRQCGDECKWKCCCGTTFSRKDKLFGHVALFEGHMPAVVLEECEEKGKQVMVEEIEDSIVEKEKSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNS1</accession>
    <name>A0A392QNS1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">E3 ubiquitin-protein ligase KEG-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010150015">
        <property type="protein sequence ID" value="MCI25888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNS1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005769">
        <property type="term" value="C:early endosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005802">
        <property type="term" value="C:trans-Golgi network"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004842">
        <property type="term" value="F:ubiquitin-protein transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009738">
        <property type="term" value="P:abscisic acid-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006952">
        <property type="term" value="P:defense response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045324">
        <property type="term" value="P:late endosome to vacuole transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009788">
        <property type="term" value="P:negative regulation of abscisic acid-activated signaling pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016567">
        <property type="term" value="P:protein ubiquitination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044584">
        <property type="entry name" value="KEG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46960">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE KEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46960:SF1">
        <property type="entry name" value="E3 UBIQUITIN-PROTEIN LIGASE KEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI25888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="150" mass="16485" checksum="CE5CCF614790E4D5" modified="2018-12-05" version="1" fragment="single">MNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSTKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKQPPQYASVVGGGIPRELWKMIGECLQFKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QX34</accession>
    <name>A0A392QX34_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010168877">
        <property type="protein sequence ID" value="MCI28911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QX34"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI28911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="35" mass="3932" checksum="32D95689DD779966" modified="2018-12-05" version="1" fragment="single">CGVQLACRVVLKHNVDDPRLPPRDSIPRLPPRDPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R3G8</accession>
    <name>A0A392R3G8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010184957">
        <property type="protein sequence ID" value="MCI31148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R3G8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI31148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9960" checksum="9957A4A6B2B3DE0F" modified="2018-12-05" version="1" fragment="single">TEANTEEEEDLQAISNKRVKEGDHRFSHQSTAPLVYDGIVDVDEGNEERKSYKESVTGEDRMGRENTGRSYGRRNTDMEDDAFSDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392R499</accession>
    <name>A0A392R499_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010186909">
        <property type="protein sequence ID" value="MCI31411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392R499"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI31411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="60" mass="6907" checksum="5338501AB77CC1A2" modified="2018-12-05" version="1" fragment="single">MLQLDPALTSFLEIARWRLESQSEQEVVETENHKEKSNVTIFPKQIDVANNLLCVPVLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RC30</accession>
    <name>A0A392RC30_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010207109">
        <property type="protein sequence ID" value="MCI33747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RC30"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI33747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="10063" checksum="37D678B83E55F64F" modified="2018-12-05" version="1" fragment="single">MLHHPPTHHGNWSRPKPRRCNWRCHYCGRKGHIRPFCYKLYGYPKRTPPPTSEAENVKTKKEWKEKGKDVSLIAHTSLRASSRQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCF9</accession>
    <name>A0A392RCF9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribonuclease J</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010204641">
        <property type="protein sequence ID" value="MCI33470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCF9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="41" mass="4634" checksum="CA89A9C699A68E51" modified="2018-12-05" version="1" fragment="single">MIDETPLDGKVFDREALEELSKEGVTLVSHLHFELLQCFSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCJ5</accession>
    <name>A0A392RCJ5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tuftelin-interacting protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010208609">
        <property type="protein sequence ID" value="MCI33917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCJ5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071008">
        <property type="term" value="C:U2-type post-mRNA release spliceosomal complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000390">
        <property type="term" value="P:spliceosomal complex disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000467">
        <property type="entry name" value="G_patch_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045211">
        <property type="entry name" value="TFP11/STIP/Ntr1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23329:SF1">
        <property type="entry name" value="TUFTELIN-INTERACTING PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23329">
        <property type="entry name" value="TUFTELIN-INTERACTING PROTEIN 11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01585">
        <property type="entry name" value="G-patch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00443">
        <property type="entry name" value="G_patch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50174">
        <property type="entry name" value="G_PATCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G-patch" evidence="2">
        <location>
            <begin position="32"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI33917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="135" mass="15026" checksum="55ECB117206AA8D0" modified="2018-12-05" version="1" fragment="single">MRREKERLEEKKKKAGLGQVVSVDFAGFEKHTKKIGSKLLAKMGYKFGGGVGINQQGIVNPIEVMKPSILNGLNESKKNTTPLPTLQTEKKDAPVGDVQPTVGISRERSGLKQWKKNKKKEEYVTAEDFLASKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RCJ7</accession>
    <name>A0A392RCJ7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010205278">
        <property type="protein sequence ID" value="MCI33546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RCJ7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14223">
        <property type="entry name" value="Retrotran_gag_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI33546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8586" checksum="257C180F453A43CE" modified="2018-12-05" version="1" fragment="single">MSAHLSAEEKTEMNDMAVSAIILCLGDKVLREVARETSAVLLWTKLDSFYMTKSLAHRQCLKQQLYFYRMVENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RFE2</accession>
    <name>A0A392RFE2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010218518">
        <property type="protein sequence ID" value="MCI34937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RFE2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI34937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3733" checksum="94805FD44AEAD1DE" modified="2018-12-05" version="1" fragment="single">MPYLFSLRFMFSTSVWNMNEFTEAAAATPLMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="22" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RGV5</accession>
    <name>A0A392RGV5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Calmodulin-like protein 5-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010221849">
        <property type="protein sequence ID" value="MCI35274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.10:FF:000001">
        <property type="entry name" value="Calmodulin 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.10">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039647">
        <property type="entry name" value="EF_hand_pair_protein_CML-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10891">
        <property type="entry name" value="EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00036">
        <property type="entry name" value="EF-hand_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13499">
        <property type="entry name" value="EF-hand_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="EF-hand"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0106">Calcium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="54"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="4">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI35274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="110" mass="12054" checksum="914AF2C60ADD8ADF" modified="2018-12-05" version="1" fragment="single">MNEKEIDDIVVKFDSNGDGLIDFEEFCLLTSESLGGGEGKKEGGVGSKEDEXXXXXXXLKEAFEVFDKDKDGLISVEELALVLSSLGLRDGNKINEECKEMIRKVDVDGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RH94</accession>
    <name>A0A392RH94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010223109">
        <property type="protein sequence ID" value="MCI35414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RH94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI35414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="21" mass="2059" checksum="1DE757FFDF905C9E" modified="2018-12-05" version="1" fragment="single">TAMTVFAATATVTAFVTATAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RKX4</accession>
    <name>A0A392RKX4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010232449">
        <property type="protein sequence ID" value="MCI36295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RKX4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI36295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7948" checksum="37A1CB72AE33FAA8" modified="2018-12-05" version="1" fragment="single">MKGKCLFKEDAKDKGKATEMYEDIMAAWENILDSETEEYADSVLVFLELCTEFPIFVDYVENTILGPMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RSC5</accession>
    <name>A0A392RSC5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010262477">
        <property type="protein sequence ID" value="MCI39004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RSC5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5151" checksum="16F92A4C85752EB8" modified="2018-12-05" version="1" fragment="single">MGTKEGNFDESTSDRGGIGLLELLDGVEGANGGWNIQGRNGRVGSATSIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RTE0</accession>
    <name>A0A392RTE0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010273320">
        <property type="protein sequence ID" value="MCI39908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RTE0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI39908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="44" mass="5039" checksum="5BAF773F0A342180" modified="2018-12-05" version="1" fragment="single">VTVTRKPEKDEGNKLHSNTSTNHNQELSDDHRREEKSSPGRAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RU04</accession>
    <name>A0A392RU04_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cullin-like protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010265550">
        <property type="protein sequence ID" value="MCI39270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RU04"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI39270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="123" mass="14330" checksum="E150EFA8C4884A32" modified="2018-12-05" version="1" fragment="single">TNTGKHFAKNVTIEIPYEKLDLVLEQPVDFESLRANGFDVKKFFQDQGWLSYFDILNGPVYTQLVKDFWKRCDIITQEEADKEYNLKVAEDPKKNKGKSRKKLGLREFTETEIRSGCTGYEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RWB7</accession>
    <name>A0A392RWB7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phytochrome B-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010285640">
        <property type="protein sequence ID" value="MCI40933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RWB7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.20">
        <property type="entry name" value="PAS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013654">
        <property type="entry name" value="PAS_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47876">
        <property type="entry name" value="OS08G0260000 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47876:SF3">
        <property type="entry name" value="PHYTOCHROME 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08446">
        <property type="entry name" value="PAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS fold-2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8836" checksum="A8F71F26A4D177BA" modified="2018-12-05" version="1" fragment="single">MNPIWIHSRSTGKPYYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYJ8</accession>
    <name>A0A392RYJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010295209">
        <property type="protein sequence ID" value="MCI41698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI41698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="115" mass="13305" checksum="F1D702EB12ED8685" modified="2018-12-05" version="1" fragment="single">RFRRGDTRNEALEDQDGKQARVVATVHHQQAHLGRSFKQAVMGKPVEGRRMKNRKKESEAEYLANVMEVEIVPENLAKLQNSYVGFLWDAKEAKIMQLTIWMEGYQKVVVRSMGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYU1</accession>
    <name>A0A392RYU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010285834">
        <property type="protein sequence ID" value="MCI40950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="77"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI40950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="93" mass="10354" checksum="898A23646DC02588" modified="2018-12-05" version="1" fragment="single">TTRSSLLATDPLPPLNRVYATLIQEERVKVIARSKEERTEIVGLVVKTGGRTRGRGYPDWWGDRPRHDTKGVTRVKGQQSQGRGRGMGVRANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392RYX7</accession>
    <name>A0A392RYX7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010296734">
        <property type="protein sequence ID" value="MCI41823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392RYX7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI41823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4421" checksum="54E20A00BD3ABA82" modified="2018-12-05" version="1" fragment="single">GADGRIKRSRYGHVEFLQRQAAEEQQAVPADEEHVVQQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S0J4</accession>
    <name>A0A392S0J4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010303842">
        <property type="protein sequence ID" value="MCI42388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S0J4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI42388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6368" checksum="ECCC5A7F78995506" modified="2018-12-05" version="1">MRYTKVMSLQDVRTREVRTSRDVLEVECSRLSMLGPSSHFLEGFEKPRVEVEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S3D5</accession>
    <name>A0A392S3D5_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cyclin-dependent kinases regulatory subunit</fullName>
        </recommendedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the CKS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010303833">
        <property type="protein sequence ID" value="MCI42386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S3D5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016538">
        <property type="term" value="F:cyclin-dependent protein serine/threonine kinase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.170.10">
        <property type="entry name" value="Cyclin-dependent kinase, regulatory subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000789">
        <property type="entry name" value="Cyclin-dep_kinase_reg-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036858">
        <property type="entry name" value="Cyclin-dep_kinase_reg-sub_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23415">
        <property type="entry name" value="CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01111">
        <property type="entry name" value="CKS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00296">
        <property type="entry name" value="CYCLINKINASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01084">
        <property type="entry name" value="CKS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55637">
        <property type="entry name" value="Cell cycle regulatory proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00944">
        <property type="entry name" value="CKS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 4" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU311113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCI42386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="40" mass="4773" checksum="75F39343BE5361C0" modified="2018-12-05" version="1" fragment="single">MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSEVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S4N4</accession>
    <name>A0A392S4N4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010316521">
        <property type="protein sequence ID" value="MCI43382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S4N4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI43382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="19" mass="1818" checksum="40EB84B5A72D13F1" modified="2018-12-05" version="1" fragment="single">MAEISISPLKGNGGTANSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S7I8</accession>
    <name>A0A392S7I8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010329517">
        <property type="protein sequence ID" value="MCI44357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S7I8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="37"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="4978" checksum="2A82F290D9B31275" modified="2018-12-05" version="1" fragment="single">PPDHHRTTTGPPPDHHRTAAGPPSVAGKFCAPPPRAAAPVPEVRPLTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S882</accession>
    <name>A0A392S882_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Intracellular protein transport protein USO1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the NET family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010327092">
        <property type="protein sequence ID" value="MCI44180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S882"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051015">
        <property type="term" value="F:actin filament binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011684">
        <property type="entry name" value="NAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051861">
        <property type="entry name" value="NET_actin-binding_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32258:SF20">
        <property type="entry name" value="KINASE INTERACTING (KIP1-LIKE) FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32258">
        <property type="entry name" value="PROTEIN NETWORKED 4A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07765">
        <property type="entry name" value="KIP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51774">
        <property type="entry name" value="NAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAB" evidence="3">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00038006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI44180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9922" checksum="E07123CAB0343FE4" modified="2018-12-05" version="1" fragment="single">MDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHRTMSEAFPNQNPMMITDDFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392S9L4</accession>
    <name>A0A392S9L4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gag-pol polyprotein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010332179">
        <property type="protein sequence ID" value="MCI44546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392S9L4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108:SF9">
        <property type="entry name" value="REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI44546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="69" mass="7822" checksum="0ACA047CCEB5B229" modified="2018-12-05" version="1">MVEPRPLPPAKQPYPPGFDMNARCDYHVGSPGHHIEDCRVFKLKVQELIDLQLTLFKKEPHSGMVTPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SAK3</accession>
    <name>A0A392SAK3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DUF4283 domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010336956">
        <property type="protein sequence ID" value="MCI44905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SAK3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI44905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="86" mass="9567" checksum="3A5CAAFD0D1939B5" modified="2018-12-05" version="1" fragment="single">MDQAVTSDVSVAHLEAQVRSTVRTHRNKRTSSCPPEARRSVISGPWSLEWLNYQNHGDAAVIFSASKKSRKGNHHGQSLNKKGQQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SBZ3</accession>
    <name>A0A392SBZ3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioredoxin-like protein AAED1 chloroplastic-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010351018">
        <property type="protein sequence ID" value="MCI45962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SBZ3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="30" mass="3122" checksum="5E9D38D6A41E8ACB" modified="2018-12-05" version="1" fragment="single">MDASGVALVLIGPGNIDQAKAFDEQTKFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SCW9</accession>
    <name>A0A392SCW9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like protein kinase HSL1-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010347634">
        <property type="protein sequence ID" value="MCI45725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SCW9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI45725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5588" checksum="41F95C5496A2B4C3" modified="2018-12-05" version="1" fragment="single">MILVYEYLEHSCLDKWLHNKNSSSDTSGSAQDVILDWPKQLRIAIGIAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SE57</accession>
    <name>A0A392SE57_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010354396">
        <property type="protein sequence ID" value="MCI46230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SE57"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI46230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7442" checksum="8674A0DC2BA6772A" modified="2018-12-05" version="1" fragment="single">MVPRSRFKWDLDLAGDLERESSRSMESSKVIDGITIDLNARWRIVKKEIELLVFSPQAKTRGQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SP52</accession>
    <name>A0A392SP52_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA/RNA polymerase superfamily protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010412714">
        <property type="protein sequence ID" value="MCI50187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SP52"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.70">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="86" mass="9962" checksum="4F44D6C3CEEBD5D8" modified="2018-12-05" version="1" fragment="single">MLKLTNLFLEEVKECHKRDKKLMEKLLSINEGKEVDFRVDGNGVVRYHGRVCVPDVPELRNMILEEGHRSGLSIHPGVTKMYQDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SRL1</accession>
    <name>A0A392SRL1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010417373">
        <property type="protein sequence ID" value="MCI50496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SRL1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI50496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="34" mass="3449" checksum="D143060D260DEFF7" modified="2018-12-05" version="1" fragment="single">MTGEESVRGKGGSVRADGEGSPKKIGNRILSFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SS48</accession>
    <name>A0A392SS48_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010420269">
        <property type="protein sequence ID" value="MCI50686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SS48"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI50686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9518" checksum="9B709B57269EE379" modified="2018-12-05" version="1" fragment="single">DCALNFLPRLKLWRLDIPPYPSIPLNVELKAMYDHEDKRFQLSTGFLLANIAKAEGSLNVGLSPKIGLSGNMSFDMFYAMVNLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392ST19</accession>
    <name>A0A392ST19_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010440378">
        <property type="protein sequence ID" value="MCI51993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392ST19"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI51993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="26" mass="2986" checksum="A20D661166F27A58" modified="2018-12-05" version="1" fragment="single">VLTKRNLGPCFSLLMSQTPLNLNRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SUU0</accession>
    <name>A0A392SUU0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010450461">
        <property type="protein sequence ID" value="MCI52638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SUU0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI52638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="51" mass="5482" checksum="247C9C65AF20B481" modified="2018-12-05" version="1" fragment="single">SDVCRVKVTCFNCGEEGHKSPVCKKPKKVMGKVFALSGEDADQVDNLIIAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392SW92</accession>
    <name>A0A392SW92_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Trigger factor-like protein TIG-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010457533">
        <property type="protein sequence ID" value="MCI53083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392SW92"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="56" mass="6371" checksum="82C7B885C822F0E0" modified="2018-12-05" version="1" fragment="single">ELDDSIADKLIPGCTTVEEVKELLLQRFQEIEQTAREQATDNAILEHISKVTTLHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T0B1</accession>
    <name>A0A392T0B1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleoredoxin</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010465207">
        <property type="protein sequence ID" value="MCI53570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T0B1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI53570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="67" mass="7426" checksum="C397FA09BA2E0631" modified="2018-12-05" version="1" fragment="single">SVMRMEMKKDIGAINQAVVNNNGNFVEEEEEAVSSFKFSHLLASKDRDFLLSPSGAQVFFSPLSPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T250</accession>
    <name>A0A392T250_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010476076">
        <property type="protein sequence ID" value="MCI54230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T250"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI54230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="83" mass="9846" checksum="DA6AAC51C41E48CD" modified="2018-12-05" version="1" fragment="single">MLRTDGEQILFDVFEGMKRYDEEEPQCHHVASIEVVEDKYKVQPPILPVERVVVDSLDAQEEEWNREIEIFLDQLEDDLEETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T527</accession>
    <name>A0A392T527_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010495620">
        <property type="protein sequence ID" value="MCI55395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T527"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI55395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="78" mass="8650" checksum="31330311C8D2DFBD" modified="2018-12-05" version="1" fragment="single">MTLRRENGLCFNCDEKFSPGHKCVSKFFIMIADEDVDPDTLEALLDPPLPDPEPAPDVTQAQISFHALSGHLAPETLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392T7Z0</accession>
    <name>A0A392T7Z0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutamate receptor 3.6</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010520436">
        <property type="protein sequence ID" value="MCI56912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392T7Z0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI56912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6621" checksum="728255AF5EAA0B71" modified="2018-12-05" version="1" fragment="single">MGSKWEIEKFTGSNDFGLWMVKMRTILVQQKCVEALKGFAQMPAHLSAEEKTEMNDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TAB5</accession>
    <name>A0A392TAB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010539557">
        <property type="protein sequence ID" value="MCI58061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TAB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI58061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6851" checksum="81894574004522A7" modified="2018-12-05" version="1" fragment="single">ASSSNTKVNVPVAAVDERPVIVDSSTFVSEPAVTTEERTIWEKQVLIPHKLEGQGIFPSAHHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392THB5</accession>
    <name>A0A392THB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010566224">
        <property type="protein sequence ID" value="MCI59580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392THB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI59580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="84" mass="9770" checksum="BF6280D8095234A2" modified="2018-12-05" version="1" fragment="single">DLQAKILDLDCKIIWEESKQQKLEQQAAQITKAEIDKEANRGIKYFSSAHVIDKEIKSLNDENDVLDTKMAHSKELYNKLKAYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJS9</accession>
    <name>A0A392TJS9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010580198">
        <property type="protein sequence ID" value="MCI60370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJS9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="54" mass="6096" checksum="B220D4E13DFDDC65" modified="2018-12-05" version="1" fragment="single">LPALAGNCTQLGEHQARCIRKLCFPDFCCQLRPAWEVPSQAQYTIHTGLTFVDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TJW8</accession>
    <name>A0A392TJW8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010587137">
        <property type="protein sequence ID" value="MCI60737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TJW8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI60737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8730" checksum="DE04727AF147A133" modified="2018-12-05" version="1" fragment="single">MIPIYCLHTPKKDKDFNLVVHSREDATPALEEVVKKEVMKLFETGIINCMPDSLRVDPVGVTSKTKCFKQPPRRFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TL26</accession>
    <name>A0A392TL26_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010597524">
        <property type="protein sequence ID" value="MCI61314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TL26"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="47"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="73"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI61314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="88" mass="9262" checksum="3C4081CF8FB454A1" modified="2018-12-05" version="1" fragment="single">QDGEAFKETVDAAQDVEAPKDLSNPTDAAQDVEASKDLSNPNDAALTESFSSSSESKASTEKEGTPDLVADSEPEKNQDKDVSGNDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TN25</accession>
    <name>A0A392TN25_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010620602">
        <property type="protein sequence ID" value="MCI62543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TN25"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI62543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9347" checksum="594DBE652C1786D1" modified="2018-12-05" version="1" fragment="single">APKAPKAPKVPKAPKAPKVPKAPKVNIPIETAVDNVPVDNVLNVADTSDTHDLIDPDMLAEILFDDELPEMISERLHCSAPVDHVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TPB4</accession>
    <name>A0A392TPB4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010624557">
        <property type="protein sequence ID" value="MCI62748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TPB4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI62748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6862" checksum="DC010794D4805627" modified="2018-12-05" version="1" fragment="single">MLLRAHRTPLLLHKAQPAEAARGSRHIRALRQPLLRCAPTPSGSPGFSLTSCYRDFKAHSTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TSH3</accession>
    <name>A0A392TSH3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010650230">
        <property type="protein sequence ID" value="MCI64153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TSH3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI64153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="18" mass="2076" checksum="E9A8A6D211F7F2F3" modified="2018-12-05" version="1" fragment="single">MKISLWRKDLMGVGVERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-07-24" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392TTK4</accession>
    <name>A0A392TTK4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PWWP domain protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010657535">
        <property type="protein sequence ID" value="MCI64513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392TTK4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052657">
        <property type="entry name" value="PDP_family_Arabidopsis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000313">
        <property type="entry name" value="PWWP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10688">
        <property type="entry name" value="PWWP DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10688:SF3">
        <property type="entry name" value="PWWP DOMAIN-CONTAINING PROTEIN 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63748">
        <property type="entry name" value="Tudor/PWWP/MBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50812">
        <property type="entry name" value="PWWP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PWWP" evidence="1">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI64513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="85" mass="9389" checksum="BEAF456BDF87C4BD" modified="2018-12-05" version="1" fragment="single">ESEEGKNDEGLTEVPIVEIGESIDVEVIGEESVEGKNDEVVNEVTVVETSESVDVDDLVDEKSEFSVGDFVWGKIKSHPWWPGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UCY3</accession>
    <name>A0A392UCY3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010785516">
        <property type="protein sequence ID" value="MCI70908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UCY3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI70908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="48" mass="5360" checksum="FEA263B31708DA33" modified="2018-12-05" version="1" fragment="single">WLIRLCCARGGGFVSVMIGCCRVLVFQIFELLTVFPNMLRFAGFMVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UIK7</accession>
    <name>A0A392UIK7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010836142">
        <property type="protein sequence ID" value="MCI73332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UIK7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="62" mass="6557" checksum="994112CABAA61191" modified="2018-12-05" version="1" fragment="single">MVWKSSVGGGIGPYKGLVVKEKVIACLKPEDKVEDVMVVRVMAALGSKVLDILGLETVEVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UM27</accession>
    <name>A0A392UM27_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Receptor-like kinase</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010849710">
        <property type="protein sequence ID" value="MCI73938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UM27"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0675">Receptor</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI73938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="64" mass="7414" checksum="4F54D18336A4E124" modified="2018-12-05" version="1">MLFKVDFEKAYDSVDWGYLDAVMGRMGFPTLWMKWIKECVCTTIESVLANGSPTEEFTLERGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UPM9</accession>
    <name>A0A392UPM9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010886737">
        <property type="protein sequence ID" value="MCI75603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UPM9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="21"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="40"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="52" mass="5157" checksum="2F7052F821BF399F" modified="2018-12-05" version="1" fragment="single">AADNKKTSKNKAKGRTSALLSQSGPGSCSSPGGGHVCSSEPKETPPEKAETG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UQ58</accession>
    <name>A0A392UQ58_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrotransposon protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010869616">
        <property type="protein sequence ID" value="MCI74867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UQ58"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051320">
        <property type="entry name" value="Viral_Replic_Matur_Polypro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064">
        <property type="entry name" value="POL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33064:SF37">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI74867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7646" checksum="DA47DA48563EC30D" modified="2018-12-05" version="1" fragment="single">MKEISFLGHVIFSEGIAVDPAKVDAVLQWSTPESVAEIRSFLGLVGYYRRFIEGFSKLAMPLTQLTRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392URW4</accession>
    <name>A0A392URW4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroquinone glucosyltransferase-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010877944">
        <property type="protein sequence ID" value="MCI75236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392URW4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008194">
        <property type="term" value="F:UDP-glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002213">
        <property type="entry name" value="UDP_glucos_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045">
        <property type="entry name" value="UDP-GLYCOSYLTRANSFERASE 72B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48045:SF11">
        <property type="entry name" value="UDP-GLYCOSYLTRANSFERASE 72B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00201">
        <property type="entry name" value="UDPGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI75236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3453" checksum="F2A3B314F95CFE6A" modified="2018-12-05" version="1" fragment="single">MVVPSWAPQIQILSHGSVGGFLTHCGWNSTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-09-13" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UU81</accession>
    <name>A0A392UU81_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GRAS family transcription factor</fullName>
        </recommendedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010972285">
        <property type="protein sequence ID" value="MCI79367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UU81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI79367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="34" mass="4136" checksum="40CCDEFBCFFE2189" modified="2018-12-05" version="1" fragment="single">MFKRDFWVKYFPADVRNRKAVEFLELKQGNMTVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392UWR3</accession>
    <name>A0A392UWR3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010976433">
        <property type="protein sequence ID" value="MCI79562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392UWR3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="37"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="50"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI79562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="7102" checksum="4991C524E81B3742" modified="2018-12-05" version="1" fragment="single">MENTSQERDKDKRPTKATASAMRAKAAENPPKKQTCDRSAQPETAQLVQPEHHEGDPEPEHHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V139</accession>
    <name>A0A392V139_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter G family member 21-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011032911">
        <property type="protein sequence ID" value="MCI82014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V139"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="49" mass="5303" checksum="2504B6A3FC3FDFA1" modified="2018-12-05" version="1" fragment="single">MFDKVVVLSDGYPIYSGNAGRVMDYLGSVGFVPGFNFVNPADFLLDLAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V241</accession>
    <name>A0A392V241_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011040664">
        <property type="protein sequence ID" value="MCI82326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V241"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI82326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="37" mass="4028" checksum="91C443E4B197CD46" modified="2018-12-05" version="1">MREAQSAPNDWLKLLLAARGACKLGAGYARERLGARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392V3H8</accession>
    <name>A0A392V3H8_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Retrotransposon gag domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011053030">
        <property type="protein sequence ID" value="MCI82848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392V3H8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005162">
        <property type="entry name" value="Retrotrans_gag_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03732">
        <property type="entry name" value="Retrotrans_gag"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Retrotransposon gag" evidence="1">
        <location>
            <begin position="11"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI82848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="66" mass="7735" checksum="EC140FB48EF018BE" modified="2018-12-05" version="1" fragment="single">MRLGPGGIAIPWEMFKGEFLIKYFPVDVKNKKVVEFMELKQWNMMVADYAVKFETLCAFSPHYNTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VFZ1</accession>
    <name>A0A392VFZ1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011163194">
        <property type="protein sequence ID" value="MCI87328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VFZ1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI87328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="33" mass="3921" checksum="4CCABDCFAF30F8A3" modified="2018-12-05" version="1" fragment="single">MHPRINSHWRYFDRIINNKVGTGKGINLDPRLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VG10</accession>
    <name>A0A392VG10_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011139576">
        <property type="protein sequence ID" value="MCI86403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VG10"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI86403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="58" mass="6408" checksum="ACF6EFC422BA4DCD" modified="2018-12-05" version="1" fragment="single">MAPIESELDSVRGLTTRAQLAERIQQLGEGVFKVAQHSWENALAQIKIVNPGLEFSTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VHF3</accession>
    <name>A0A392VHF3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011135128">
        <property type="protein sequence ID" value="MCI86245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VHF3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI86245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="68" mass="7378" checksum="A8F5A6DCD44C9001" modified="2018-12-05" version="1" fragment="single">GYREQHKTLAADLKKAEEKISTLAEERDGALKEVKELKAKIVELEGKLRESAGATVVGGDEKEVDPDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VM98</accession>
    <name>A0A392VM98_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011221741">
        <property type="protein sequence ID" value="MCI89528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VM98"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI89528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="50" mass="5621" checksum="871FDC3B5F2DE3E0" modified="2018-12-05" version="1" fragment="single">VKAQRALADAMKLMANTMAQEAVSRTADRVAQEARRGGEDELRLERFMNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VR81</accession>
    <name>A0A392VR81_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011243770">
        <property type="protein sequence ID" value="MCI90407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VR81"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI90407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="61" mass="6254" checksum="E2F80557B4F28FF7" modified="2018-12-05" version="1" fragment="single">PAPAPVSKGDSSKPDDRSKSSSSSKDDDENNNLPAEASSGAGSSNMKGMWLALVVGIAFTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VRY7</accession>
    <name>A0A392VRY7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011213281">
        <property type="protein sequence ID" value="MCI89190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VRY7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI89190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="55" mass="6199" checksum="187CFFE3707D8951" modified="2018-12-05" version="1" fragment="single">PSKIKQPQSEPAKNKEETDQNADLPPSTVTHRDPCRNRDEAHDEETVMAEETILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VUD3</accession>
    <name>A0A392VUD3_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011283839">
        <property type="protein sequence ID" value="MCI91856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VUD3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI91856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="53" mass="5807" checksum="AA27AA0681C83F00" modified="2018-12-05" version="1" fragment="single">MSSWCKNGQSQQKSTLCTVPARGAAWPGAARRGQNLNVASKQAWRAAQHPWAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VVW2</accession>
    <name>A0A392VVW2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011289926">
        <property type="protein sequence ID" value="MCI92067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VVW2"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI92067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4478" checksum="9861FEF63D820816" modified="2018-12-05" version="1" fragment="single">YRGRVCVPDVPELKKMILEEGHRNGLSIHPGVTKMYIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VWB9</accession>
    <name>A0A392VWB9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011303118">
        <property type="protein sequence ID" value="MCI92506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VWB9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="63" mass="6641" checksum="9795ED2826D6BCA8" modified="2018-12-05" version="1" fragment="single">LRGSLVALDSSTVANRWFWAISLWFWSRMKSPWLLIALTSAAITVSIGAPGGTSAITSGSDGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-05-03" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392VYV9</accession>
    <name>A0A392VYV9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011332454">
        <property type="protein sequence ID" value="MCI93568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392VYV9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI93568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="42" mass="4551" checksum="07A892954D85624B" modified="2018-12-05" version="1" fragment="single">MSYAVVMDKSKITINVRWQPSDSNWISLHTDGAVQQGVAGCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W0U4</accession>
    <name>A0A392W0U4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011297185">
        <property type="protein sequence ID" value="MCI92310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W0U4"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI92310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2664" checksum="B8832A292965CF61" modified="2018-12-05" version="1" fragment="single">GKMARCTTPCPADTLLEGMEIPSNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392W7A9</accession>
    <name>A0A392W7A9_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011417906">
        <property type="protein sequence ID" value="MCI96558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392W7A9"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI96558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="39" mass="4334" checksum="437044402ADF3557" modified="2018-12-05" version="1" fragment="single">APPFIIQINHFQDVATGAWWCNRGSPSPPVVRRRSSAVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392WET7</accession>
    <name>A0A392WET7_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA011430949">
        <property type="protein sequence ID" value="MCI97030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392WET7"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI97030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="32" mass="3689" checksum="AFD89427208F37C3" modified="2018-12-05" version="1" fragment="single">DEDEALDLEPHDDEEMQEAQPEPEAEQAAYDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N476</accession>
    <name>A0A392N476_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010027738">
        <property type="protein sequence ID" value="MCH94620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N476"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009451">
        <property type="term" value="P:RNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046960">
        <property type="entry name" value="PPR_At4g14850-like_plant"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47926">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH94620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="76" mass="8840" checksum="CD51B8862C571221" modified="2018-12-05" version="1">MEDAHGVVPETEHNACIVDLLGRAGRLDEAVEFINKMLNWETLLLKRFYQLNLNILLPMFFCPTLWNHGNLKMELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="17" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N550</accession>
    <name>A0A392N550_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Disease resistance protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="5 6">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">cv. 10/8</strain>
            <tissue evidence="5">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010026527">
        <property type="protein sequence ID" value="MCH94108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N550"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098542">
        <property type="term" value="P:defense response to other organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044974">
        <property type="entry name" value="Disease_R_plants"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002182">
        <property type="entry name" value="NB-ARC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058922">
        <property type="entry name" value="WHD_DRP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155:SF955">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23155">
        <property type="entry name" value="DISEASE RESISTANCE PROTEIN RP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00931">
        <property type="entry name" value="NB-ARC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23559">
        <property type="entry name" value="WHD_DRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0611">Plant defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="NB-ARC" evidence="3">
        <location>
            <begin position="4"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="Disease resistance protein winged helix" evidence="4">
        <location>
            <begin position="252"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="5">
        <location>
            <position position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF23559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="MCH94108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="396" mass="45462" checksum="AB9A2F101447AD56" modified="2018-12-05" version="1" fragment="single">MAELLSDEKRRCITWIVGIGGTGKTTLAKLIFEDNTVVAHFQRRLWVSLPSDCTTNQLIAEIGKEAAKQIVVEEEEEEEILSTDYILETLVRAKYLVVVDGIKETSQVYLDTLNRVIPDMSTGSRVLFTTRNANVAQHAAGTVFVHPLQLLDDETSWRLFTRHFKADIPPESEKELIKVGKEIVMKCGGLPSEILKMSDLLSHKNVMHEEWLSMLGGQQFREDQIQSWSETLDTINTNLPSYLRRCLFYFLLFPAEFGIPVRRLVVLWVAENLVHRTEDDEVPLELVAEKYLTELIDQNMVQVAKRKRNGKVKTCRLPSALRQLWLTKGNESRFLQGHRSARDSNAEPKNSIIRRVADNPHKYDTWTDHIHSGSTDSTTLRKYYKDVLSFLSFDTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="16" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392N8F1</accession>
    <name>A0A392N8F1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Retrovirus-related Pol polyprotein from transposon TNT 1-94</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010030855">
        <property type="protein sequence ID" value="MCH95853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392N8F1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09272">
        <property type="entry name" value="RNase_HI_RT_Ty1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439">
        <property type="entry name" value="GAG-POL-RELATED RETROTRANSPOSON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11439:SF455">
        <property type="entry name" value="RLK (RECEPTOR-LIKE PROTEIN KINASE) 8, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCH95853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="257" mass="28852" checksum="7E58053BE60D7969" modified="2018-12-05" version="1">MLECNSISTPMVSTCKLSKVGSDKFCDPSLYRSVVGSLQYATITRPEIAYAVNKVCQFMSNPLESHWSAVKRILRYLKGTLHMGLMLSPIDIHRPASLNVYCDADWASDPDDRRSTSGAAIYFGPNLVSWWSRKQQVVARSSTEAEYRSLAQATADVLWLQTLLKELTVPFSQPTIHCDNQSAVLLAHNPILHTRTKHMEIDLFFVREKVSAKQLTIVHIPGTDQCADILTKPVSTAKFLLMRDKLKVFSLQPCQPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NC60</accession>
    <name>A0A392NC60_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010032846">
        <property type="protein sequence ID" value="MCH96638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NC60"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH96638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="12257" checksum="D70057FD5C01047E" modified="2018-12-05" version="1">MDMSTQQGIDMADHYDTSSALWQASMRYREQVPAYFYPRYPTMHDFDEAHNQRVRSMAATHEMNRATYIRQRRAAGLPDEGGSSSMQFPGNLPRFDHDHNMPEQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NEN3</accession>
    <name>A0A392NEN3_9FABA</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010035575">
        <property type="protein sequence ID" value="MCH97659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NEN3"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="entry name" value="Endonuclease/exonuclease/phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218:SF7">
        <property type="entry name" value="ENDONUCLEASE_EXONUCLEASE_PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35218">
        <property type="entry name" value="RNASE H DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="DNase I-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease/exonuclease/phosphatase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCH97659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="222" mass="25298" checksum="EF365FD131C48938" modified="2018-12-05" version="1" fragment="single">GAAGTSFFRNCKQYLEIHRPEIMVIMETRVDPNKLKKSFELLGFDSFACASNRGYAGGIVIVWKSAFMMVHVEKVDFQFIHVRVLETGGCWYFSVVYASPSEDMRSILWTELNAIADNMSDRWLVAGDFNDIKDKSEKKGGAPINHRKCALFKERINQCRLIDLGSIGSRYTWRGPLYNGVDRIYERLDRAMSNDAWRISFPNAIVKVLPRTLKAGGDKSKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NPM1</accession>
    <name>A0A392NPM1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010045866">
        <property type="protein sequence ID" value="MCI01334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NPM1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008507">
        <property type="entry name" value="DUF789"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343:SF29">
        <property type="entry name" value="DUF789 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31343">
        <property type="entry name" value="T15D22.8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05623">
        <property type="entry name" value="DUF789"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI01334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="94" mass="10686" checksum="4B773CB61889EA9D" modified="2018-12-05" version="1" fragment="single">SAMEHDGMDIDKDVCCSNGWENIVGEDCKEKKSGSISLPPFGLATYKMQTDIWLNTDPEDYERISYLCSAADSWLKQLNIDHHDFNFFTSNSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="14" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NTB5</accession>
    <name>A0A392NTB5_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA-directed DNA polymerase (Reverse transcriptase)</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051158">
        <property type="protein sequence ID" value="MCI03087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NTB5"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09274">
        <property type="entry name" value="RNase_HI_RT_Ty3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041577">
        <property type="entry name" value="RT_RNaseH_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072">
        <property type="entry name" value="ENZYMATIC POLYPROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34072:SF52">
        <property type="entry name" value="RIBONUCLEASE H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17919">
        <property type="entry name" value="RT_RNaseH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Reverse transcriptase/retrotransposon-derived protein RNase H-like" evidence="1">
        <location>
            <begin position="31"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI03087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="120" mass="13892" checksum="5E1AD3EA340BB8B7" modified="2018-12-05" version="1" fragment="single">MLIYPSCYNGELLNQLLRLEVIFDWLVIIGVYCDASKMGLGGVLMQKGQVVAYASRQLKVHERNYPTHDLELADKELNMRQRRWIEFLKDYDFELSYHPGKANVVADALSRKSLHMSALM</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="26" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392NVX8</accession>
    <name>A0A392NVX8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="7">GATA transcription factor 24-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="7 8">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">cv. 10/8</strain>
            <tissue evidence="7">Leaf</tissue>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010051954">
        <property type="protein sequence ID" value="MCI03370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392NVX8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005634">
        <property type="term" value="C:nucleus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010402">
        <property type="entry name" value="CCT_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045280">
        <property type="entry name" value="TIFY-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46125:SF7">
        <property type="entry name" value="GATA TRANSCRIPTION FACTOR 19-LIKE ISOFORM X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46125">
        <property type="entry name" value="GATA TRANSCRIPTION FACTOR 28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06203">
        <property type="entry name" value="CCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51017">
        <property type="entry name" value="CCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0539">Nucleus</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="CCT" evidence="6">
        <location>
            <begin position="43"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="7">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="MCI03370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="74" mass="8641" checksum="05AEE690C5A4864C" modified="2018-12-05" version="1" fragment="single">VQAVLLLLGGRDAPAGMPKVEQRFDQSIKSMGDITRHPNLSQRIASLVRYREKRKDRCFEKKIRYTVRKEVAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2024-05-29" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PA11</accession>
    <name>A0A392PA11_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-ascorbate oxidase</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010069638">
        <property type="protein sequence ID" value="MCI08614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd13872">
        <property type="entry name" value="CuRO_2_AAO_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="entry name" value="Cupredoxins - blue copper proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034271">
        <property type="entry name" value="CuRO_2_AO-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709:SF246">
        <property type="entry name" value="L-ASCORBATE OXIDASE-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="MULTI-COPPER OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="Cupredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="1">
        <location>
            <begin position="28"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI08614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="210" mass="23189" checksum="C90DC7F945CCB04B" modified="2018-12-05" version="1" fragment="single">MQRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALSKLLDSSRSLGRPQAVLINGQNAKGDGSDKPLFTMKPGKTYKYRICNVGLKSSLNFRIQGHPLKLVEMEGSHTVQNTYDSLDVHLGXCFGVLVTANKEPKDYYMVASTRFTKSITTGKGIIRYTNGKGPASHELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PGN0</accession>
    <name>A0A392PGN0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010077070">
        <property type="protein sequence ID" value="MCI10639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PGN0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021414">
        <property type="entry name" value="DUF3054"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35283">
        <property type="entry name" value="T12C22.21 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35283:SF3">
        <property type="entry name" value="T12C22.21 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11255">
        <property type="entry name" value="DUF3054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI10639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="82" mass="8600" checksum="67C90A02535412B8" modified="2018-12-05" version="1" fragment="single">RVALFAGGDVLALLLFATIGRYSHGLSILDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="15" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PMJ8</accession>
    <name>A0A392PMJ8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RING finger protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010082813">
        <property type="protein sequence ID" value="MCI12115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PMJ8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI12115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="207" mass="22377" checksum="AAC897B6531EC794" modified="2018-12-05" version="1" fragment="single">MHSSSAGPFFTVSENYVHQPSSSNYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPMPSESRPEKPNMDSQYMPWDHVAMTTPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSSNHSHNSYPNVPPVGHSSLADLSAQVSTSLTRDWSQMSVTPANGRVLLSDTSTFGLETSHFPVGNAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-04-02" version="13" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PR55</accession>
    <name>A0A392PR55_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cellular nucleic acid-binding protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="3 4">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">cv. 10/8</strain>
            <tissue evidence="3">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010091134">
        <property type="protein sequence ID" value="MCI14137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PR55"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00303">
        <property type="entry name" value="retropepsin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="entry name" value="Acid Proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.60.10">
        <property type="entry name" value="Zinc finger, CCHC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032567">
        <property type="entry name" value="RTL1-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001878">
        <property type="entry name" value="Znf_CCHC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036875">
        <property type="entry name" value="Znf_CCHC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503">
        <property type="entry name" value="LDOC1 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15503:SF42">
        <property type="entry name" value="ZINC FINGER, CCHC-TYPE, RETROTRANSPOSON GAG DOMAIN, ASPARTIC PEPTIDASE DOMAIN PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08284">
        <property type="entry name" value="RVP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00098">
        <property type="entry name" value="zf-CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00343">
        <property type="entry name" value="ZnF_C2HC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="Acid proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57756">
        <property type="entry name" value="Retrovirus zinc finger-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50158">
        <property type="entry name" value="ZF_CCHC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="domain" description="CCHC-type" evidence="2">
        <location>
            <begin position="27"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="3">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="MCI14137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="241" mass="26652" checksum="0B688699B502802D" modified="2018-12-05" version="1" fragment="single">CPKKEDKCFRCGKLGHRANACQEKVVCFNCGEEGHKSLECKKLKTTIGKVFALSGEGADQVDNLIKGTCFIYDIPLIAIIDTGATHSFISVDCAKRLNIPMTEIPGCMKIETPSSGSVTTQLVCLNCPVTVFGRHFGMDLVCIPLSGIDVIFGMNWLIFNRVHINCCAKTVMFPKPEEDSQLMSSKEMRKSLSEQAEVFAMFASLKLESGNKMEELPVVREFPDVFPGDVSDLPPEREVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="19" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PTU1</accession>
    <name>A0A392PTU1_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PPR family. P subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010095038">
        <property type="protein sequence ID" value="MCI15102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PTU1"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002885">
        <property type="entry name" value="PPR_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00756">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47941">
        <property type="entry name" value="PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13041">
        <property type="entry name" value="PPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51375">
        <property type="entry name" value="PPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="PPR" evidence="3">
        <location>
            <begin position="21"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI15102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="87" mass="9950" checksum="1AF83304B01C9802" modified="2018-12-05" version="1" fragment="single">GNLKAALKVRARMEKERKQPNVVTYNVLIKGYCKIDKLEAANGLLNEMLEKGLNPNRITYDIVRLEMLEKGFIPDIEGHLYNISSMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392PWX0</accession>
    <name>A0A392PWX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010098755">
        <property type="protein sequence ID" value="MCI15950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392PWX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI15950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="25" mass="2554" checksum="DC815F18AE5D8DC5" modified="2018-12-05" version="1" fragment="single">GSSLPSVILYCGRSSKQELNEGDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2026-01-28" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q0P2</accession>
    <name>A0A392Q0P2_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein odr-4</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010105266">
        <property type="protein sequence ID" value="MCI17399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI17399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="91" mass="9966" checksum="33439DB6F1E1A8EF" modified="2018-12-05" version="1">MELLSMKAPTEVSTILEPEKEVISFXTKSFWDVAVPSYSXIHLIEDKMKLDSRGESSSDKLVKPGHINVVAAGLILLLSVLVGFVLFVLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="10" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q4P8</accession>
    <name>A0A392Q4P8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endonuclease/exonuclease/phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010112248">
        <property type="protein sequence ID" value="MCI18892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q4P8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="RNA-binding domain, RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI18892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="216" mass="24458" checksum="E2F9C9E44DB8E006" modified="2018-12-05" version="1" fragment="single">LWKVFARYGRVGEVYVPNKVDRWGRRFGFTKFLEVQNVEESSKKLGDVWCGTYKLRINLSRFGRNNNQKAIVQPSKNSEEVSYKEAPANEGKSFLEVLGEGSNNRTKVSKGKEPVLMESLVKPAEATSSLPPLMLEPEPDLLHTLECSFVGKLVHGKNIKMIQLNLCMEGLQFIRVASMGDGWVLVFSDSGEDVQKPISNKVWWDGLLEDLRPWTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="11" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392Q529</accession>
    <name>A0A392Q529_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reverse transcriptase-like protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010113799">
        <property type="protein sequence ID" value="MCI19218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392Q529"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003964">
        <property type="term" value="F:RNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116:SF86">
        <property type="entry name" value="REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33116">
        <property type="entry name" value="REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0695">RNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI19218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="178" mass="20757" checksum="B13A1EB54D1BD5D7" modified="2018-12-05" version="1" fragment="single">FLVPQHICDQIEKAICKFWWGGYDTQRKIHWKARRELFRSKKVGGLGFRSIRLFNEALLAKQAWRLHTMPNSTLARTYKAKYYPSGNIFQASNGPYPSYAWRSICQATEVIKRGSCWNVGNGQDISIWSDNWVPQQNGFKILTRPNGVNRVDKVSELIEGQPPKWNHSLIDQRWKLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2022-12-14" version="7" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QGM0</accession>
    <name>A0A392QGM0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentatricopeptide repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010134087">
        <property type="protein sequence ID" value="MCI23089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QGM0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI23089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="104" mass="11998" checksum="2F550C628618CA61" modified="2018-12-05" version="1" fragment="single">MEERNSEFFFGSFSQDSESEMVQMFPIETIKPSTEGRSIKIGEIDCFLLASESELVAEWKKQGFVFEDDKFVPSCNEESFMECQYDTTFGSKNWFDLPLGGIFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-10-08" version="20" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QHG8</accession>
    <name>A0A392QHG8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein tipD-like</fullName>
        </submittedName>
    </protein>
    <organism evidence="4 5">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">cv. 10/8</strain>
            <tissue evidence="4">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010135402">
        <property type="protein sequence ID" value="MCI23324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QHG8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000045">
        <property type="term" value="P:autophagosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.130.10.10:FF:001877">
        <property type="entry name" value="Autophagy-related protein 16 isoform A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045160">
        <property type="entry name" value="ATG16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020472">
        <property type="entry name" value="WD40_PAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019775">
        <property type="entry name" value="WD40_repeat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19878">
        <property type="entry name" value="AUTOPHAGY PROTEIN 16-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19878:SF8">
        <property type="entry name" value="AUTOPHAGY-RELATED 16, ISOFORM F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00320">
        <property type="entry name" value="GPROTEINBRPT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00678">
        <property type="entry name" value="WD_REPEATS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50082">
        <property type="entry name" value="WD_REPEATS_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0853">WD repeat</keyword>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="47"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="80"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="repeat" description="WD" evidence="3">
        <location>
            <begin position="139"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="4">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="MCI23324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="194" mass="20659" checksum="7AC451AA9B771577" modified="2018-12-05" version="1" fragment="single">DKVCAVDVSKVSSRHVVSAAYDRTIKVWDLLKGYCINTIIFHSNCNALCFSTDGQTIFSGHVDGNLRLWDIKTGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVSGTLKAAGNRVASNWSRSCISPDDKNVAAGSSDGSVYVWSASKGDIVSTLKEHTSSILCCAWSGLGRPLASADKNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QNX0</accession>
    <name>A0A392QNX0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010151185">
        <property type="protein sequence ID" value="MCI26081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QNX0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI26081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="151" mass="16633" checksum="E136F1B2DB0C5289" modified="2018-12-05" version="1" fragment="single">TTVQSSPRQRTNDGEPPFGLPIGFVSPPQITFSAPAMTSERVNPITSRNVDVRGNIARMSNSGFLGNFSYGYTDNSSLSNITNTTLQSLRQQMDDSNQEMVNMMTQQMVTIFNPIVENSNAAYQALATRMSQIAEMLGAPYQMPVLTMLKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="8" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QT94</accession>
    <name>A0A392QT94_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Calcineurin-like metallo-phosphoesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010159724">
        <property type="protein sequence ID" value="MCI27508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QT94"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34211">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34211:SF3">
        <property type="entry name" value="CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="105" mass="11926" checksum="3E77573A90C3A694" modified="2018-12-05" version="1" fragment="single">AAMSRAEDGTQQRDLLYDHFSEKDDFWFDFMADTGDGGNSSYAVARLLARPSIRTLKDDSEVTLPRGDLLLIGGDLAYVAYSLWLLERLLIDHYMLIESFFLVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVS8</accession>
    <name>A0A392QVS8_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BZIP transcription factor</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">cv. 10/8</strain>
            <tissue evidence="1">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010162809">
        <property type="protein sequence ID" value="MCI27992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVS8"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46667:SF6">
        <property type="entry name" value="OS01G0185100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46667">
        <property type="entry name" value="OS05G0182700 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="1">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="MCI27992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="65" mass="6896" checksum="BFA9A19485A63B1A" modified="2018-12-05" version="1" fragment="single">LSDFTSLLSGYTGTMLFKNGKLSDIIGELQLLVKGLEKSGDQDEGGGEVADPIAAQVTRLVNEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2025-02-05" version="12" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QVV0</accession>
    <name>A0A392QVV0_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="2 3">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL clade</taxon>
            <taxon>Trifolieae</taxon>
            <taxon>Trifolium</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2018" name="Front. Plant Sci." volume="9" first="724" last="724">
            <title>Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) - A Picture of Genomic Similarities and Differences.</title>
            <authorList>
                <person name="Dluhosova J."/>
                <person name="Istvanek J."/>
                <person name="Nedelnik J."/>
                <person name="Repkova J."/>
            </authorList>
            <dbReference type="PubMed" id="29922311"/>
            <dbReference type="DOI" id="10.3389/fpls.2018.00724"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">cv. 10/8</strain>
            <tissue evidence="2">Leaf</tissue>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="LXQA010158931">
        <property type="protein sequence ID" value="MCI27375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A0A392QVV0"/>
    <dbReference type="Proteomes" id="UP000265520">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="non-terminal residue" evidence="2">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="MCI27375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000265520"/>
        </source>
    </evidence>
    <sequence length="134" mass="14198" checksum="4FD3D7FE1B44A9FA" modified="2018-12-05" version="1" fragment="single">SAGRTIRLRDGTRTGSGTSPRALRPGGPAGNRTGTAGSPDGNLHGSAGQRDQSPGRLHSRPEPETDGPKPAFGSCRGVQGDETLSKQPSSEIPYSGEKPQYHEVKITTTSEKKRKVTVPKETRDLISKLPTIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2018-12-05" modified="2023-02-22" version="9" xmlns="https://uniprot.org/uniprot">
    <accession>A0A392QWI4</accession>
    <name>A0A392QWI4_9FABA</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <organism evidence="1 2">
        <name type="scientific">Trifolium medium</name>
        <dbReference type="NCBI Taxonomy" id="97028"/>
        <lineage>
            <taxon>Eukaryota</taxon>
            <taxon>Viridiplantae</taxon>
            <taxon>Streptophyta</taxon>
            <taxon>Embryophyta</taxon>
            <taxon>Tracheophyta</taxon>
            <taxon>Spermatophyta</taxon>
            <taxon>Magnoliopsida</taxon>
            <taxon>eudicotyledons</taxon>
            <taxon>Gunneridae</taxon>
            <taxon>Pentapetalae</taxon>
            <taxon>rosids</taxon>
            <taxon>fabids</taxon>
            <taxon>Fabales</taxon>
            <taxon>Fabaceae</taxon>
            <taxon>Papilionoideae</taxon>
            <taxon>50 kb inversion clade</taxon>
            <taxon>NPAAA clade</taxon>
            <taxon>Hologalegina</taxon>
            <taxon>IRL 